Using-the-Peary-software-:-pearycli-and-ATLASPixServer.md

@@ -184,22 +184,22 @@ The commands available in the pearycli are divided in two categories:
 
 The next sections will detail each of these commands and their purposes 
 # Peary commands 
-* `add_device <device type>`
-* `configure <ID>`
-* `daqStart <ID>`
-* `daqStop <ID>`
-* exit
-* help
-* list_commands
-* list_devices
-* powerOff
-* powerOn
-* quit
-* reset
-* setBias
-* setRegister
-* verbosity
-* version
+* `add_device <device type>` : Adds a new device to the device known by pearycli. `<device type>` can be one of the devices known to the Peary software. For ATLASPix, the device type is ATLASPix
+* `configure <ID>`: Program the ATLASPix with ID `<ID>` with the default configuration
+* `daqStart <ID>` : Start data acquisition on the device with ID `<ID>`
+* `daqStop <ID>` : Stop data acquisition on the device with ID `<ID>`
+* `exit` : Exit the pearycli
+* `help` : Print a list of available commands
+* `list_commands <ID>` : List the device specifics commands for device with ID `<ID>` 
+* `list_devices` : List registered devices
+* `powerOff <ID>` : Power off the LV for device with ID `<ID>`
+* `powerOn <ID>`  : Power on the LV for device with ID `<ID>`
+* `quit` : Exit the pearycli
+* `reset <ID>` : Reset of the system. Reset CaR board components plus perform device specific resets
+* `setBias <bias> <value> <ID>` : Set bias voltage for the bias defined by the name `<bias>` at value `<value>` for ID `<ID>`. For ATLASPix, the main biases are : `VDDD,VDDA,VSSA,VDDRAM,VDDHigh,BLPix,ThPix,VMinus,GNDACPix`
+* `setRegister <register name> <value> <ID>` : Set the value of a register identified by name `<register name>` to value `<value>` for chip with ID `<ID>`. This register can be a chip, FPGA or Software register.
+* `verbosity <LEVEL>` : Set the pearycli verbosity level to `<LEVEL>`. Available levels are : INFO,DEBUG,WARNING
+* `version <ID>` : Returns the FW and SW version for device with ID `<ID>`