Short term solution for multiple DSID commits

Use log.generate.short to determine whether athena should run in the CI

• Update run athena script to skip directories not containing log.generate.short
• Update logParser job to skip directories not containing log.generate.short - print WARNING
• Update automatic submission script to use a better syntax -DSID=123456,123457,... -skipAthena=123456,123457 -h
• Update automatic submission script to skip athena running for directories not containing log.generate
• Update instructions for people accepting MR that they make sure to look into the log of logParser jobs