update for new EDM, minor changes to accessors for covariance matrix (TRT_CalibAlgs-00-01-02)

InnerDetector/InDetCalibAlgs/TRT_CalibAlgs/TRT_CalibAlgs/TRTCalibrationMgr.h

+/*
+  Copyright (C) 2002-2017 CERN for the benefit of the ATLAS collaboration
+*/
+
+#ifndef TRT_CALIBALGS_TRTCALIBRATIONMGR_H
+#define TRT_CALIBALGS_TRTCALIBRATIONMGR_H
+
+#include <string>
+#include <vector>
+#include "AthenaBaseComps/AthAlgorithm.h"
+#include "GaudiKernel/ToolHandle.h"
+#include "GaudiKernel/ServiceHandle.h"
+
+#include "StoreGate/DataHandle.h"
+//#include "TrkTrack/Track.h"
+//#include "TRT_ConditionsTools/TRTCalDbTool.h"
+
+class EventInfo;
+namespace TRT{
+  class TrackInfo;
+}
+
+namespace Trk{
+ class ITrackSelectorTool;
+ class ITrackFitter;
+}
+class IFillAlignTrkInfo;
+class ITRTCalibrator;
+class IAccumulator;
+class IFitTool;
+
+class ITRT_CalDbSvc;
+
+/**
+
+      @class TRTCalibrationMgr
+
+      This algorithm controls the flow of the TRT calibration.
+
+Documentation being updated (Jan 2009)
+
+The calculation of t0 from the timeresidual histogram is made in the
+following way: First it is checked where the maximum bin is located.
+If its absolute value is bigger then 5 ns NO fit is made, but the
+histogram mean value is used for Dt0 instead (this was just taken from
+previous versions and I have never really questioned the reason for
+it). If the highest bin is lower than 5 ns a normal gaussian fit is
+made and Dt0 is set to the mean of that. The new t0 is then the old t0
++ Dt0.
+
+            
+      @author Chafik, Johan, Alex
+
+*/
+
+class TRTCalibrationMgr: public AthAlgorithm
+{
+
+public:
+
+  TRTCalibrationMgr(const std::string& name, ISvcLocator* pSvcLocator);
+  ~TRTCalibrationMgr(void);
+
+  StatusCode initialize(void);    
+  StatusCode execute(void);
+  StatusCode finalize(void);  
+
+private:
+ 
+  ToolHandleArray<IFillAlignTrkInfo>  m_TrackInfoTools;
+  ToolHandleArray<ITRTCalibrator>     m_TRTCalibTools;
+  ToolHandleArray<IAccumulator>       m_AccumulatorTools;
+  ToolHandleArray<IFitTool>           m_FitTools;
+  ToolHandle<Trk::ITrackFitter>       m_trackFitter;
+
+  ServiceHandle<ITRT_CalDbSvc> m_trtcaldbSvc ;
+
+  bool m_dorefit;
+  bool m_docalibrate;
+
+  bool m_writeConstants;
+  int m_ntrk;
+
+  const DataHandle<EventInfo> m_EventInfo;
+  ToolHandle<Trk::ITrackSelectorTool>   m_trackSelector;   //!< Tool handle to the Trk::ITrackSelectorTool
+
+  std::vector<std::string> m_TrkCollections;
+  unsigned int m_max_ntrk;
+};
+
+#endif // TRT_CALIBALGS_TRTCALIBRATIONMGR_H

InnerDetector/InDetCalibAlgs/TRT_CalibAlgs/TRT_CalibAlgs/TRT_StrawStatus.h

+/*
+  Copyright (C) 2002-2017 CERN for the benefit of the ATLAS collaboration
+*/
+
+///////////////////////////////////////////////////////////////////
+// TRT_StrawStatus.h, (c) ATLAS Detector software
+///////////////////////////////////////////////////////////////////
+
+#ifndef INDETTRT_STRAWSTATUS_H
+#define INDETTRT_STRAWSTATUS_H
+
+// Gaudi includes
+#include "AthenaBaseComps/AthAlgorithm.h"
+#include "GaudiKernel/ServiceHandle.h"
+#include "GaudiKernel/ToolHandle.h"
+#include "TrkToolInterfaces/IUpdator.h"
+
+#include <stdlib.h>
+#include <string.h>
+#include <string>
+#include <vector>
+
+class AtlasDetectorID;
+class Identifier;
+
+class TRT_ID;
+class ITRT_StrawNeighbourSvc;
+class ITRT_StrawStatusSummarySvc ;
+class ITRT_HWMappingSvc;
+class ITRT_DCS_ConditionsSvc;
+
+namespace Trk {
+  class ITrackHoleSearchTool;
+}
+
+
+namespace InDet 
+{
+
+  /** @class TRT_StrawStatus
+
+      This algorithm finds dead or hot TRT straws / chips / boards based on  
+      occupancy and hits on track.
+      To be used in calibration stream (to mask off dead regions before processing)
+            
+      @author  Sasa Fratina <sasa.fratina@cern.ch>
+  */  
+
+  class TRT_StrawStatus : public AthAlgorithm
+    {
+    public:
+
+       /** Standard Athena-Algorithm Constructor */
+       TRT_StrawStatus(const std::string& name, ISvcLocator* pSvcLocator);
+       /** Default Destructor */
+       ~TRT_StrawStatus();
+
+       /** standard Athena-Algorithm method */
+       StatusCode          initialize();
+       /** standard Athena-Algorithm method */
+       StatusCode          execute();
+       /** standard Athena-Algorithm method */
+       StatusCode          finalize();
+
+    private:
+
+      void clear();	
+   //   void detailedReportResults();
+      void reportResults();
+      void printDetailedInformation();
+	
+      /** function that returns straw index (in range 0-5481; 0-1641 for barrel, the rest for endcap) 
+	      same convention as for TRT_monitoring (copied from there) */
+      void myStrawIndex(Identifier id, int *index);
+	  int barrelStrawNumber(int strawNumber, int strawlayerNumber, int LayerNumber);
+	  int endcapStrawNumber( int strawNumber, int strawLayerNumber, int LayerNumber );
+	  	  
+      /** returns index of hardware units: board, chip, pad
+		  private fix for now, will call TRTStrawNeighbourSvc when available 
+		  number boards 0-9 barrel, 0-19 endcap (first 12 on A wheels, ordering from smaller to larger |z|)
+		  number chips 0-103 barrel, 0-239 endcap
+		  number pads: chips x 2 */
+		  
+   //   void myHardwareMapping(Identifier id, int &board, int &chip, int &pad);
+
+      int m_nBarrelStraws; // 1642
+      int m_nEndcapStraws; // 3840
+      int m_nAllStraws; // 1642+3840=5484
+	  
+      int m_nBarrelBoards; // 9
+      int m_nEndcapBoards; // 20
+      int m_nAllBoards; // 29
+
+      int m_nBarrelChips; // 104
+      int m_nEndcapChips; // 240
+      int m_nAllChips; // 344
+
+      int m_nBarrelPads; // 2 x N of chips
+      int m_nEndcapPads; 
+      int m_nAllPads; 
+	  
+      int m_nEvents; // count N of processed events, needed for normalization
+      int m_runNumber;
+ 
+      /** accumulate hits, last index: 0 - all hits, 1 - hits on track, 2 - all HT (TR) hits, 3 - HT (TR) hits on track */	 
+      int m_accumulateHits[2][32][5482][6];
+
+      const TRT_ID *m_TRTHelper;
+
+      ServiceHandle<ITRT_HWMappingSvc> m_mapSvc;
+      ServiceHandle<ITRT_DCS_ConditionsSvc> m_DCSSvc;
+      ServiceHandle<ITRT_StrawNeighbourSvc> m_TRTStrawNeighbourSvc;
+      ServiceHandle<ITRT_StrawStatusSummarySvc> m_TRTStrawStatusSummarySvc;
+      ToolHandle<Trk::ITrackHoleSearchTool>  m_trt_hole_finder;
+      ToolHandle<Trk::IUpdator> m_updator;
+      double m_locR_cut;
+
+
+      std::string m_tracksName;
+      std::string m_fileName;         
+      int m_skipBusyEvents;
+
+ //     int m_accumulateStrawWordFlag;
+   //   int m_accumulateStrawWord[2][32][5482][28];
+
+      /** member variables for algorithm properties: */
+      // int/double/bool  m_propertyName;
+      int m_printDetailedInformation;
+    }; 
+} // end of namespace
+
+#endif 

InnerDetector/InDetCalibAlgs/TRT_CalibAlgs/cmt/requirements

+package TRT_CalibAlgs
+
+author Wouter Hulsbergen <Wouter.Hulsbergen@cern.ch>
+author Chafik Driouichi <chafik@nbi.dk>
+author Sasa Fratina <sasa.fratina@cern.ch>
+
+use AthenaBaseComps      AthenaBaseComps-*         Control
+
+use StoreGate            StoreGate-*               Control
+use AtlasPolicy          AtlasPolicy-*
+
+use GaudiInterface       GaudiInterface-*          External
+
+use  TrkToolInterfaces          TrkToolInterfaces-*             Tracking/TrkTools
+
+private
+
+use VxVertex             VxVertex-*                Tracking/TrkEvent
+use EventInfo            EventInfo-*               Event
+use DataModel            DataModel-*               Control
+
+use TRT_CalibData        TRT_CalibData-*           InnerDetector/InDetCalibEvent
+use TRT_CalibTools       TRT_CalibTools-*          InnerDetector/InDetCalibTools
+use TRT_ConditionsData   TRT_ConditionsData-*      InnerDetector/InDetConditions
+use TRT_ConditionsServices TRT_ConditionsServices-* InnerDetector/InDetConditions
+
+use CommissionEvent      CommissionEvent-*      Commission
+
+
+use TrkTrack             TrkTrack-*                Tracking/TrkEvent
+use TrkParameters        TrkParameters-*           Tracking/TrkEvent
+use TrkFitterInterfaces  TrkFitterInterfaces-*     Tracking/TrkFitter
+use TRT_TrackHoleSearch  TRT_TrackHoleSearch-* 	InnerDetector/InDetRecTools
+
+# add for TRT_StrawStatus
+use Identifier                  Identifier-*                 DetectorDescription
+use InDetIdentifier             InDetIdentifier-*            InnerDetector/InDetDetDescr
+use InDetRawData                InDetRawData-*               InnerDetector/InDetRawEvent
+use InDetPrepRawData            InDetPrepRawData-*           InnerDetector/InDetRecEvent
+use InDetRIO_OnTrack            InDetRIO_OnTrack-*           InnerDetector/InDetRecEvent
+
+use AtlasROOT                   AtlasROOT-*                     External
+
+public
+
+apply_pattern declare_joboptions files="*.py"
+apply_tag ROOTMathLibs
+
+apply_pattern component_library
+library TRT_CalibAlgs *.cxx components/*.cxx

InnerDetector/InDetCalibAlgs/TRT_CalibAlgs/configfile

+#####################################################################################################
+##												   ##
+##        General configuration file for the TRT Calibration     				   ##
+##		If you don't know how to setup, please visit Twiki:  				   ##
+##			TRTOfflineCalibration							   ##
+##												   ##
+##		This Script requieres:								   ##
+##			-Permission to use the idcalib AFS account 				   ##
+##			-Permission to use the batch queue atlasidcal				   ##
+##			-Special C++ code to do merging and calibration:			   ##
+##												   ##
+##	Please report problems, bugs, comments, ... to:	          				   ##
+##		Johan Lundqvist		<johan.lundquistNOSPAMnbi.dk>				   ##
+##		Alejandro Alonso	<alejandro.alonsoNOSPAMhep.lu.se>			   ##
+##										 		   ##
+#####################################################################################################
+
+# === e-mail address of user
+UserMail        = joahn.lundquist@nbi.dk 
+
+# === Select ESD or RAW
+DataType        = ESD
+Inputdir        = castor:/castor/cern.ch/grid/atlas/tzero/prod1/perm/data10_7TeV/physics_MinBias/0152166/data10_7TeV.00152166.physics_MinBias.recon.ESD.f236
+Inputpattern    = *
+
+# === If "True" this one overrides both data types RAW and ESD
+
+#For MC
+IsCosmicMC      	= False
+#For Real Data:
+IsCosmic        	= False
+IsSingleBeam		= False
+IsCollision		= True
+
+
+# === DB tags (NOT NEEDED TO SETUP; THEY WILL AUTOSETUP when running from ESDs)
+RTtag           = TrtCalibRt-bootstrap-01 
+T0tag           = TrtCalibT0-bootstrap-01
+IOVstart        = 76702 
+IOVend          = 76702
+DetDescVer      = ATLAS-GEO-10-00-00
+GLtag           = COMCOND-ES1PST-002-00
+
+# === Selects which jobs to submit. If "False" the shell scripts are still generated
+SubmitRecJobs   = True
+SubmitMergeJobs = True
+SubmitCalJobs   = True
+SubmitCnvJobs   = True
+
+# === Set the job prefix to be used in the lxbatch job name. Important to run different calibrations at the same time, note that the .sh files don't change the name!!
+JobPrefix       = 
+Tag             = 
+
+# === Set directories
+Workdir         = /afs/cern.ch/user/i/idcalib/w0/TRT_Calibration/batch/johantest/Beamdata/testarea
+WorkdirRec      = /afs/cern.ch/user/i/idcalib/w0/TRT_Calibration/shifterCollisions2010_30march/testarea/
+Calibdir        = /afs/cern.ch/user/i/idcalib/w0/TRT_Calibration/batch/johantest/Beamdata/testarea/InnerDetector/InDetCalibAlgs/TRT_CalibAlgs/share
+WWWdir          = /afs/cern.ch/user/i/idcalib/w0/TRT_Calibration/www/CalibrationRunList
+
+# === ATLAS sw release
+#Release         = 15.5.4.12,AtlasTier0,32,runtime
+#ReleaseRec      = 15.5.4.12,AtlasTier0,32,runtime
+#Release         = 15.6.3.1,AtlasProduction,32,runtime
+#ReleaseRec      = 15.6.3.1,AtlasProduction,32,runtime
+#Release         = 15.6.3.3,AtlasProduction,32,runtime
+#ReleaseRec      = 15.6.3.3,AtlasProduction,32,runtime
+Release         = 15.6.3.3,AtlasProduction,32,runtime
+ReleaseRec      = 15.6.7.8,AtlasProduction,32,runtime
+
+# === Magnetic field (This will be autosetup on initiazation)
+MagnetOn        = True
+
+# === Athena log output
+GetLog          = True
+OutputLevel     = INFO
+
+# === Job control
+CleanRRoot      = False
+CleanCRoot      = False
+CleanCTxt       = False
+CleanCLog       = False
+Batchqueue      = atlasidcal
+DoAthenaCalib   = True
+UseHist         = True
+MaxParallel     = 35 
+StartIter       = 0
+NumIter         = 1 
+
+# === Selects from where to load the calib constants for the first iteration
+#StartConst      = /afs/cern.ch/user/i/idcalib/w0/TRT_Calibration/shifterCosmicsJanuary2010/calibout_final_143657.txt
+StartConst      = db
+
+# === Set calibration parameters
+MinT0           = 500
+MinRT           = 10000
+UsePol0         = False
+FloatPol3       = True
+UseChipRef      = True
+UseHist         = True
+#RtRelation      = dines
+RtRelation      = basic
+RtBinning       = t
+SplitAC         = True
+
+DoRt            = detector 
+RTglobalValues  = line:'-3 -1 -1 -1 -1 : 0 0.000000e+00 8.123064e-02 -1.417874e-03 1.676736e-05' 
+#RTglobalValues  = file:/afs/cern.ch/user/j/johan/johantest/Cosmics/MCBinned.txt
+#If you don't want to perform Rt calibration, the Rt relation to be used has to be given in the previous line
+
+DoT0            = straw
+T0globalValues  = line:'-3 -1 -1 -1 -1 : 20 0.0'
+#T0globalValues  = file:/afs/cern.ch/user/j/johan/shifter/batch_91007_RtFixed/input/calibout_04.txt 
+#If you don't want to perform T0 calibration, the global T0 to be used has to be given in the previous line
+
+#MeanT0 is used only in cosmic data, to keep the average T0 fixed. Note, it requieres the script NormalizeT0.py inside package /TRTCalibration 
+#If you dont want to do it, set this value to 0
+MeanT0          = 0
+
+#Setup subdetectors to be calibrated
+doEc-2          = True
+doEc2           = True
+doBA-1          = True
+doBA1           = True
+
+# === Just renew the www links
+Relink          = False

InnerDetector/InDetCalibAlgs/TRT_CalibAlgs/share/AtlasStyle.C

+//
+// ATLAS Style, based on a style file from BaBar
+//
+
+#include <iostream>
+
+#include "AtlasStyle.h"
+
+#include "TROOT.h"
+
+void SetAtlasStyle ()
+{
+  static TStyle* atlasStyle = 0;
+  std::cout << "\nApplying ATLAS style settings...\n" << std::endl ;
+  if ( atlasStyle==0 ) atlasStyle = AtlasStyle();
+  gROOT->SetStyle("ATLAS");
+  gROOT->ForceStyle();
+}
+
+TStyle* AtlasStyle() 
+{
+  TStyle *atlasStyle = new TStyle("ATLAS","Atlas style");
+
+  // use plain black on white colors
+  Int_t icol=0; // WHITE
+  atlasStyle->SetFrameBorderMode(icol);
+  atlasStyle->SetFrameFillColor(icol);
+  atlasStyle->SetCanvasBorderMode(icol);
+  atlasStyle->SetCanvasColor(icol);
+  atlasStyle->SetPadBorderMode(icol);
+  atlasStyle->SetPadColor(icol);
+  atlasStyle->SetStatColor(icol);
+  //atlasStyle->SetFillColor(icol); // don't use: white fill color for *all* objects
+
+  // set the paper & margin sizes
+  atlasStyle->SetPaperSize(20,26);
+
+  // set margin sizes
+  atlasStyle->SetPadTopMargin(0.05);
+  atlasStyle->SetPadRightMargin(0.05);
+  atlasStyle->SetPadBottomMargin(0.16);
+  atlasStyle->SetPadLeftMargin(0.16);
+
+  // set title offsets (for axis label)
+  atlasStyle->SetTitleXOffset(1.4);
+  atlasStyle->SetTitleYOffset(1.4);
+
+  // use large fonts
+  //Int_t font=72; // Helvetica italics
+  Int_t font=42; // Helvetica
+  Double_t tsize=0.05;
+  atlasStyle->SetTextFont(font);
+
+  atlasStyle->SetTextSize(tsize);
+  atlasStyle->SetLabelFont(font,"x");
+  atlasStyle->SetTitleFont(font,"x");
+  atlasStyle->SetLabelFont(font,"y");
+  atlasStyle->SetTitleFont(font,"y");
+  atlasStyle->SetLabelFont(font,"z");
+  atlasStyle->SetTitleFont(font,"z");
+  
+  atlasStyle->SetLabelSize(tsize,"x");
+  atlasStyle->SetTitleSize(tsize,"x");
+  atlasStyle->SetLabelSize(tsize,"y");
+  atlasStyle->SetTitleSize(tsize,"y");
+  atlasStyle->SetLabelSize(tsize,"z");
+  atlasStyle->SetTitleSize(tsize,"z");
+
+  // use bold lines and markers
+  atlasStyle->SetMarkerStyle(20);
+  atlasStyle->SetMarkerSize(1.2);
+  atlasStyle->SetHistLineWidth(2.);
+  atlasStyle->SetLineStyleString(2,"[12 12]"); // postscript dashes
+
+  // get rid of X error bars 
+  //atlasStyle->SetErrorX(0.001);
+  // get rid of error bar caps
+  atlasStyle->SetEndErrorSize(0.);
+
+  // do not display any of the standard histogram decorations
+  atlasStyle->SetOptTitle(0);
+  //atlasStyle->SetOptStat(1111);
+  atlasStyle->SetOptStat(0);
+  //atlasStyle->SetOptFit(1111);
+  atlasStyle->SetOptFit(0);
+
+  // put tick marks on top and RHS of plots
+  atlasStyle->SetPadTickX(1);
+  atlasStyle->SetPadTickY(1);
+
+  return atlasStyle;
+
+}
+

InnerDetector/InDetCalibAlgs/TRT_CalibAlgs/share/AtlasStyle.h

+//
+//   @file    AtlasStyle.h         
+//   
+//            ATLAS Style, based on a style file from BaBar
+//
+//
+//   @author M.Sutton
+// 
+//   Copyright (C) 2010 Atlas Collaboration
+//
+//   $Id: AtlasStyle.h, v0.0   Thu 25 Mar 2010 10:34:20 CET $
+
+#ifndef  __ATLASSTYLE_H
+#define __ATLASSTYLE_H
+
+#include "TStyle.h"
+
+void SetAtlasStyle();
+
+TStyle* AtlasStyle(); 
+
+#endif // __ATLASSTYLE_H

InnerDetector/InDetCalibAlgs/TRT_CalibAlgs/share/AtlasStyle.py

+from ROOT import *
+ROOT.gROOT.LoadMacro("AtlasStyle.C") 
+#SetAtlasStyle()

InnerDetector/InDetCalibAlgs/TRT_CalibAlgs/share/CollisionCalibTemplate.py

+import os,sys,time,glob,fnmatch
+
+def collisioncalib(config,inputfiles,calibconstants,calpart,calsettings):
+#    print "Loading from CalibCollisionTemplate.py"
+#    print "Based on Thjis jO: "
+    ostring="""
+# Collision JOs
+#
+#--------------------------------------------------------------
+# Control
+#--------------------------------------------------------------
+# --- Set output level threshold (2=DEBUG, 3=INFO, 4=WARNING, 5=ERROR, 6=FATAL )
+OutputLevel     = INFO
+# --- produce an atlantis data file
+doJiveXML       = False
+# --- run the Virtual Point 1 event visualisation
+doVP1           = False
+# --- controls what is written out. ESD includes AOD, so it's normally enough
+doWriteESD      = False
+doWriteAOD      = False
+# --- read BS - please look at the default input file(s) to know the det descr and cond tag
+doReadBS        = False
+###doReadBS        = True
+# --- do auditors ?
+doAuditors      = True
+
+import os
+if os.environ['CMTCONFIG'].endswith('-dbg'):
+  # --- do EDM monitor (debug mode only)
+  doEdmMonitor    = True
+  # --- write out a short message upon entering or leaving each algorithm
+  doNameAuditor   = True
+else:
+  doEdmMonitor    = False
+  doNameAuditor   = False
+
+#--------------------------------------------------------------
+# detector description version: both RDO and BS default use this
+#--------------------------------------------------------------
+DetDescrVersion =  '%s'""" % config["DetDescVer"]
+    ostring+="""
+#--------------------------------------------------------------
+# load Global Flags and set defaults (import the new jobProperty globalflags)
+#--------------------------------------------------------------
+import AthenaCommon.SystemOfUnits as Units
+from AthenaCommon.GlobalFlags import globalflags
+# --- default is atlas geometry
+globalflags.DetGeo = 'atlas'
+# --- set defaults
+globalflags.DataSource = 'data'
+# --- BS default input uses this
+if 'doReadBS' in dir() and doReadBS:
+  globalflags.InputFormat   = 'bytestream'
+  globalflags.ConditionsTag = '%s'""" % config['GLtag']
+    ostring+="""
+else:
+  globalflags.DataSource = 'data'
+  globalflags.InputFormat = 'pool'
+
+globalflags.DetDescrVersion = DetDescrVersion
+globalflags.ConditionsTag =  '%s'""" % config["GLtag"]
+    ostring+="""
+
+# --- printout
+globalflags.print_JobProperties()
+
+if len(globalflags.ConditionsTag())!=0:
+   from IOVDbSvc.CondDB import conddb
+   conddb.setGlobalTag(globalflags.ConditionsTag())