diff --git a/InnerDetector/InDetExample/InDetSLHC_Example/test/test_InclinedAlternative_17-06-00_single_electrons_100GeV.sh b/InnerDetector/InDetExample/InDetSLHC_Example/test/test_InclinedAlternative_17-06-00_single_electrons_100GeV.sh
new file mode 100755
index 0000000000000000000000000000000000000000..547d1d2de3f9ed5b90dd46c2e441de620179d4fe
--- /dev/null
+++ b/InnerDetector/InDetExample/InDetSLHC_Example/test/test_InclinedAlternative_17-06-00_single_electrons_100GeV.sh
@@ -0,0 +1,227 @@
+#!/bin/bash
+# art-description: InclinedDuals sim+reco
+# art-type: grid
+# art-include: 21.9/Athena
+# art-output: *.root
+# art-output: *.xml
+# art-output: dcube*
+
+# Fix ordering of output in logfile
+exec 2>&1
+run() { (set -x; exec "$@") }
+
+# Following specify which steps to run.
+dosim=1
+dorec=1 # Reco_tf.py not yet working
+dophy=1 # If dorec=0, set dophy=1 to run InDetPhysValMonitoring over old ESD
+
+# Following specify DCube output directories. Set empty to disable.
+dcube_sim_electrons_100GeV_fixref="dcube_sim_electrons_100GeV"
+dcube_sim_electrons_100GeV_lastref="dcube_sim_electrons_100GeV_last"
+dcube_digi_pixel_electrons_100GeV_fixref="dcube_digi_pixel_electrons_100GeV"
+dcube_digi_pixel_electrons_100GeV_lastref="dcube_digi_pixel_electrons_100GeV_last"
+dcube_digi_strip_electrons_100GeV_fixref="dcube_digi_strip_electrons_100GeV"
+dcube_digi_strip_electrons_100GeV_lastref="dcube_digi_strip_electrons_100GeV_last"
+dcube_rec_electrons_100GeV_fixref="dcube_electrons_100GeV"
+dcube_rec_electrons_100GeV_lastref="dcube_electrons_100GeV_last"
+
+artdata=/cvmfs/atlas-nightlies.cern.ch/repo/data/data-art
+#artdata=/eos/atlas/atlascerngroupdisk/data-art/grid-input
+
+name="InclinedDuals"
+script="`basename \"$0\"`"
+
+evnt_electrons_100GeV=$artdata/InDetSLHC_Example/inputs/electrons_100GeV_EVNT.09244567._000004.pool.root.1
+hits_ref_electrons_100GeV=$artdata/InDetSLHC_Example/inputs/InclinedDuals_HITS_mu_100GeV.root
+
+if [ $dosim -ne 0 ]; then
+ hits_electrons_100GeV=physval_electrons_100GeV.HITS.root
+else
+ hits_electrons_100GeV="$hits_ref_electrons_100GeV"
+fi
+if [ $dorec -ne 0 ]; then
+ esd_electrons_100GeV=physval_electrons_100GeV.ESD.root
+ daod_electrons_100GeV=physval_electrons_100GeV.DAOD_IDTRKVALID.root
+else
+ esd_electrons_100GeV=$artdata/InDetSLHC_Example/inputs/InclinedDuals_ESD_mu_100GeV.root
+ daod_electrons_100GeV=$artdata/InDetSLHC_Example/inputs/physval_electrons_100GeV.DAOD_IDTRKVALID.root
+fi
+#jo=$artdata/InDetSLHC_Example/jobOptions/PhysValITk_jobOptions.py moved to share/
+dcubemon_electrons_100GeV_sim=SiHitValid_electrons_100GeV.root
+dcubemon_electrons_100GeV_digi_pixel=PixelRDOAnalysis_electrons_100GeV.root
+dcubemon_electrons_100GeV_digi_strip=SCT_RDOAnalysis_electrons_100GeV.root
+dcubemon_electrons_100GeV_rec=physval_electrons_100GeV.root
+dcubecfg_sim=$artdata/InDetSLHC_Example/dcube/config/InclinedDuals_SiHitValid.xml
+dcubecfg_digi_pixel=$artdata/InDetSLHC_Example/dcube/config/InclinedDuals_PixelRDOAnalysis.xml
+dcubecfg_digi_strip=$artdata/InDetSLHC_Example/dcube/config/InclinedDuals_SCT_RDOAnalysis.xml
+dcubecfg_rec=$artdata/InDetSLHC_Example/dcube/config/InclinedDuals_physval.xml
+dcuberef_electrons_100GeV_sim=$artdata/InDetSLHC_Example/ReferenceHistograms/InclinedDuals_electrons_100GeV_SiHitValid.root
+dcuberef_electrons_100GeV_rec=$artdata/InDetSLHC_Example/ReferenceHistograms/InclinedDuals_electrons_100GeV_physval.root
+dcuberef_electrons_100GeV_digi_pixel=$artdata/InDetSLHC_Example/ReferenceHistograms/PixelRDOAnalysis_electrons_100GeV.root
+dcuberef_electrons_100GeV_digi_strip=$artdata/InDetSLHC_Example/ReferenceHistograms/SCT_RDOAnalysis_electrons_100GeV.root
+art_dcube=/cvmfs/atlas.cern.ch/repo/sw/art/dcube/bin/art-dcube
+lastref_electrons_100GeV_dir=last_results_electrons_100GeV
+
+if [ \( $dosim -ne 0 -a -n "$dcube_sim_electrons_100GeV_lastref" \) -o \( $dophy -ne 0 -a -n "$dcube_rec_electrons_100GeV_lastref" \) ]; then
+ run art.py download --user=artprod --dst="$lastref_electrons_100GeV_dir" InDetSLHC_Example "$script"
+ run ls -la "$lastref_electrons_100GeV_dir"
+fi
+
+dcube() {
+ # Run DCube and print art-result (if $2 is not empty)
+ step="$1" statname="$2" dcubemon="$3" dcubecfg="$4" dcuberef="$5" dcubedir="$6"
+ test -n "$dcubedir" || return
+ run ls -lLU "$art_dcube" "$dcubemon" "$dcubecfg" "$dcuberef"
+ if [ ! -s "$dcubemon" ]; then
+ echo "$script: $step output '$dcubemon' not created. Don't create $dcubedir output." 2>&1
+ test -n "$statname" && echo "art-result: 20 $statname"
+ return
+ fi
+ if [ ! -s "$dcuberef" ]; then
+ echo "$script: $step DCube reference '$dcuberef' not available. Don't create $dcubedir output." 2>&1
+ test -n "$statname" && echo "art-result: 21 $statname"
+ return
+ fi
+ echo "$script: DCube comparison of $step output '$dcubemon' with '$dcuberef' reference"
+ keep=""
+ test "$dcubedir" != "dcube" -a -d "dcube" && keep="dcube_keep_`uuidgen`"
+ test -n "$keep" && run mv -f dcube "$keep"
+ run "$art_dcube" "$name" "$dcubemon" "$dcubecfg" "$dcuberef"
+ dcube_stat=$?
+ test -n "$statname" && echo "art-result: $dcube_stat $statname"
+ test "$dcubedir" != "dcube" && run mv -f dcube "$dcubedir"
+ test -n "$keep" && run mv -f "$keep" dcube
+}
+
+if [ $dosim -ne 0 ]; then
+
+ ## this runs single electrons simulation
+ run ls -lL "$evnt_electrons_100GeV"
+
+ # Sim step: based on RTT SimInclinedDuals_GMX job:
+ run Sim_tf.py \
+ --inputEVNTFile "$evnt_electrons_100GeV" \
+ --outputHITSFile "$hits_electrons_100GeV" \
+ --skipEvents 0 \
+ --maxEvents 10000 \
+ --randomSeed 873254 \
+ --geometryVersion ATLAS-P2-ITK-17-06-00_VALIDATION \
+ --conditionsTag OFLCOND-MC15c-SDR-14-04 \
+ --truthStrategy MC15aPlus \
+ --DataRunNumber 242000 \
+ --preInclude all:'InDetSLHC_Example/preInclude.SLHC.py,InDetSLHC_Example/preInclude.NoTRT_NoBCM_NoDBM.py,InDetSLHC_Example/preInclude.SLHC_Setup_InclBrl_4.py,InDetSLHC_Example/preInclude.SLHC_Setup_Strip_GMX.py' \
+ --preExec all:'from InDetSLHC_Example.SLHC_JobProperties import SLHC_Flags; SLHC_Flags.doGMX.set_Value_and_Lock(True); SLHC_Flags.LayoutOption="InclinedAlternative"' \
+ --postInclude all:'PyJobTransforms/UseFrontier.py,InDetSLHC_Example/postInclude.SLHC_Setup_InclBrl_4.py,InDetSLHC_Example/postInclude.SLHC_Setup.py,InDetSLHC_Example/postInclude.SiHitAnalysis.py' \
+ --postExec EVNTtoHITS:'ServiceMgr.DetDescrCnvSvc.DoInitNeighbours = False; from AthenaCommon import CfgGetter;CfgGetter.getService("ISF_MC15aPlusTruthService").BeamPipeTruthStrategies+=["ISF_MCTruthStrategyGroupIDHadInt_MC15"];'\
+#all:'ToolSvc.LayoutTranslationHelper.translateIdentifiersForInclinedAlternative=True;'
+
+ # --preInclude all:'InDetSLHC_Example/preInclude.SLHC.py,InDetSLHC_Example/preInclude.NoTRT_NoBCM_NoDBM.py,InDetSLHC_Example/preInclude.SLHC_Setup_InclBrl_4.py,InDetSLHC_Example/preInclude.SLHC_Setup_Strip_GMX.py' \
+#--preExec all:'from InDetSLHC_Example.SLHC_JobProperties import SLHC_Flags; SLHC_Flags.doGMX.set_Value_and_Lock(True); SLHC_Flags.LayoutOption="InclinedAlternative"' \
+#--postInclude all:'PyJobTransforms/UseFrontier.py,InDetSLHC_Example/postInclude.SLHC_Setup_InclBrl_4.py,InDetSLHC_Example/postInclude.SLHC_Setup.py,InDetSLHC_Example/postInclude.SiHitAnalysis.py' \
+#--postExec EVNTtoHITS:'ServiceMgr.DetDescrCnvSvc.DoInitNeighbours=False; from AthenaCommon import CfgGetter; CfgGetter.getService("ISF_MC15aPlusTruthService").BeamPipeTruthStrategies+=["ISF_MCTruthStrategyGroupIDHadInt_MC15"];'
+
+ echo "art-result: $? sim"
+
+
+
+
+ mv ./SiHitValid.root ./$dcubemon_electrons_100GeV_sim
+
+
+
+
+
+ # DCube Sim hit plots
+ dcube Sim_tf sim-plot "$dcubemon_electrons_100GeV_sim" "$dcubecfg_sim" "$lastref_electrons_100GeV_dir/$dcubemon_electrons_100GeV_sim" "$dcube_sim_electrons_100GeV_lastref"
+ dcube Sim_tf "" "$dcubemon_electrons_100GeV_sim" "$dcubecfg_sim" "$dcuberef_electrons_100GeV_sim" "$dcube_sim_electrons_100GeV_fixref"
+
+fi
+
+if [ $dorec -ne 0 ]; then
+
+ ## Starting reconstruction for single electrons
+ if [ $dosim -ne 0 ] && [ ! -s "$hits_electrons_100GeV" ] && [ -s "$hits_ref_electrons_100GeV" ]; then
+ echo "$script: Sim_tf output '$hits_electrons_100GeV' not created. Run Reco_tf on '$hits_ref_electrons_100GeV' instead." 2>&1
+ hits_electrons_100GeV="$hits_ref_electrons_100GeV"
+ fi
+
+ run ls -lL "$hits_electrons_100GeV"
+
+ # Reco step: based on RecoInclinedDuals_GMX RTT job
+ # some preExecs for E2D step are workarounds - should be revisited.
+ run Reco_tf.py \
+ --inputHITSFile "$hits_electrons_100GeV" \
+ --outputRDOFile physval_electrons_100GeV.RDO.root \
+ --outputESDFile "$esd_electrons_100GeV" \
+ --outputAODFile physval_electrons_100GeV.AOD.root \
+ --outputDAOD_IDTRKVALIDFile "$daod_electrons_100GeV" \
+ --maxEvents -1 \
+ --digiSteeringConf StandardInTimeOnlyTruth \
+ --geometryVersion ATLAS-P2-ITK-17-06-00 \
+ --conditionsTag OFLCOND-MC15c-SDR-14-04 \
+ --DataRunNumber 242000 \
+ --steering doRAWtoALL \
+ --postInclude all:'PyJobTransforms/UseFrontier.py,InDetSLHC_Example/postInclude.SLHC_Setup_InclBrl_4.py,InDetSLHC_Example/postInclude.SLHC_Setup.py' \
+ HITtoRDO:'InDetSLHC_Example/postInclude.SLHC_Digitization_lowthresh.py' \
+ RAWtoALL:'InDetSLHC_Example/postInclude.DigitalClustering.py' \
+ --preInclude all:'InDetSLHC_Example/preInclude.SLHC_Setup_InclBrl_4.py,InDetSLHC_Example/preInclude.SLHC_Setup_Strip_GMX.py,InDetSLHC_Example/preInclude.SLHC_Calorimeter_mu0.py' \
+ HITtoRDO:'InDetSLHC_Example/preInclude.SLHC.py,InDetSLHC_Example/preInclude.SiliconOnly.py' \
+ default:'InDetSLHC_Example/preInclude.SLHC.SiliconOnly.Reco.py,InDetSLHC_Example/SLHC_Setup_Reco_TrackingGeometry_GMX.py' \
+ RDOMergeAthenaMP:'InDetSLHC_Example/preInclude.SLHC.py,InDetSLHC_Example/preInclude.SiliconOnly.pyInDetSLHC_Example/SLHC_Setup_Reco_TrackingGeometry_GMX.py' \
+ POOLMergeAthenaMPAOD0:'InDetSLHC_Example/preInclude.SLHC.SiliconOnly.Ana.py,InDetSLHC_Example/SLHC_Setup_Reco_Alpine.py' \
+ POOLMergeAthenaMPDAODIDTRKVALID0:'InDetSLHC_Example/preInclude.SLHC.SiliconOnly.Ana.py,InDetSLHC_Example/SLHC_Setup_Reco_Alpine.py' \
+ --preExec all:'from AthenaCommon.GlobalFlags import globalflags; globalflags.DataSource.set_Value_and_Lock("geant4"); from InDetSLHC_Example.SLHC_JobProperties import SLHC_Flags; SLHC_Flags.doGMX.set_Value_and_Lock(True); SLHC_Flags.LayoutOption="InclinedAlternative";' \
+ HITtoRDO:'from Digitization.DigitizationFlags import digitizationFlags; digitizationFlags.doInDetNoise.set_Value_and_Lock(False); digitizationFlags.doBichselSimulation.set_Value_and_Lock(False); digitizationFlags.overrideMetadata+=["SimLayout","PhysicsList"];' \
+ RAWtoALL:'from InDetRecExample.InDetJobProperties import InDetFlags; InDetFlags.doStandardPlots.set_Value_and_Lock(True);from PixelConditionsServices.PixelConditionsServicesConf import PixelCalibSvc;ServiceMgr +=PixelCalibSvc();InDetFlags.useDCS.set_Value_and_Lock(True);ServiceMgr.PixelCalibSvc.DisableDB=True;from InDetPrepRawDataToxAOD.InDetDxAODJobProperties import InDetDxAODFlags;InDetDxAODFlags.DumpLArCollisionTime.set_Value_and_Lock(False);InDetDxAODFlags.DumpSctInfo.set_Value_and_Lock(True);InDetDxAODFlags.ThinHitsOnTrack.set_Value_and_Lock(False)' \
+ ESDtoDPD:'rec.DPDMakerScripts.set_Value_and_Lock(["PrimaryDPDMaker/PrimaryDPDMaker.py"]);from InDetRecExample.InDetJobProperties import InDetFlags;InDetFlags.useDCS.set_Value_and_Lock(True);from PixelConditionsServices.PixelConditionsServicesConf import PixelCalibSvc;ServiceMgr +=PixelCalibSvc();ServiceMgr.PixelCalibSvc.DisableDB=True' \
+ --postExec all:'ToolSvc.LayoutTranslationHelper.translateIdentifiersForInclinedAlternative=True;'\
+ HITtoRDO:'pixeldigi.EnableSpecialPixels=False; CfgMgr.MessageSvc().setError+=["HepMcParticleLink"];' \
+ RAWtoALL:'ToolSvc.InDetSCT_ClusteringTool.useRowInformation=True; from AthenaCommon.AppMgr import ToolSvc; ToolSvc.InDetTrackSummaryTool.OutputLevel=INFO;from InDetPhysValMonitoring.InDetPhysValMonitoringConf import InDetPhysValDecoratorAlg;decorators = InDetPhysValDecoratorAlg();topSequence += decorators'
+
+
+ reco_stat=$?
+ echo "art-result: $reco_stat reco"
+ if [ "$reco_stat" -ne 0 ]; then
+ echo "$script: Reco_tf.py isn't working yet. Remove jobReport.json to prevent pilot declaring a failed job."
+ run rm -f jobReport.json
+ fi
+
+ mv ./PixelRDOAnalysis.root ./$dcubemon_electrons_100GeV_digi_pixel
+ mv ./SCT_RDOAnalysis.root ./$dcubemon_electrons_100GeV_digi_strip
+
+ # DCube digi plots
+ dcube Reco_tf digi-plot "$dcubemon_electrons_100GeV_digi_pixel" "$dcubecfg_digi_pixel" "$lastref_electrons_100GeV_dir/$dcubemon_electrons_100GeV_digi_pixel" "$dcube_digi_pixel_electrons_100GeV_lastref"
+ dcube Reco_tf "" "$dcubemon_electrons_100GeV_digi_pixel" "$dcubecfg_digi_pixel" "$dcuberef_electrons_100GeV_digi_pixel" "$dcube_digi_pixel_electrons_100GeV_fixref"
+
+ dcube Reco_tf digi-plot "$dcubemon_electrons_100GeV_digi_strip" "$dcubecfg_digi_strip" "$lastref_electrons_100GeV_dir/$dcubemon_electrons_100GeV_digi_strip" "$dcube_digi_strip_electrons_100GeV_lastref"
+ dcube Reco_tf "" "$dcubemon_electrons_100GeV_digi_strip" "$dcubecfg_digi_strip" "$dcuberef_electrons_100GeV_digi_strip" "$dcube_digi_strip_electrons_100GeV_fixref"
+
+fi
+
+if [ $dophy -ne 0 ]; then
+
+ ## phys validation and dcube for single electrons
+ run ls -lLU "$esd_electrons_100GeV"
+
+ if [ ! -s "$esd_electrons_100GeV" ]; then
+ echo "$script: Reco_tf output '$esd_electrons_100GeV' not created - exit" 2>&1
+ echo "art-result: 21 physval"
+# test -n "$dcube_rec_fixref" && echo "art-result: 22 plot-fixref"
+ test -n "$dcube_rec_electrons_100GeV_lastref" && echo "art-result: 22 plot"
+ exit
+ fi
+
+ # Run InDetPhysValMonitoring on DAOD.
+ # It should eventually be possible to include this in the reco step, but this needs Reco_tf to support the ITk IDPVM setup.
+ ( set -x
+ inputDAOD_IDTRKVALIDFile="$daod_electrons_100GeV" exec athena.py InDetSLHC_Example/PhysValITk_jobOptions.py
+ )
+ echo "art-result: $? physval"
+
+ mv ./physval.root ./$dcubemon_electrons_100GeV_rec
+
+ # DCube InDetPhysValMonitoring performance plots
+ dcube InDetPhysValMonitoring plot "$dcubemon_electrons_100GeV_rec" "$dcubecfg_rec" "$lastref_electrons_100GeV_dir/$dcubemon_electrons_100GeV_rec" "$dcube_rec_electrons_100GeV_lastref"
+ dcube InDetPhysValMonitoring "" "$dcubemon_electrons_100GeV_rec" "$dcubecfg_rec" "$dcuberef_electrons_100GeV_rec" "$dcube_rec_electrons_100GeV_fixref"
+
+fi
diff --git a/InnerDetector/InDetExample/InDetSLHC_Example/test/test_InclinedAlternative_17-06-00_single_muons_100GeV.sh b/InnerDetector/InDetExample/InDetSLHC_Example/test/test_InclinedAlternative_17-06-00_single_muons_100GeV.sh
new file mode 100755
index 0000000000000000000000000000000000000000..b8aa400e2708c66bb7c028a0cb35f145fb4b3d77
--- /dev/null
+++ b/InnerDetector/InDetExample/InDetSLHC_Example/test/test_InclinedAlternative_17-06-00_single_muons_100GeV.sh
@@ -0,0 +1,227 @@
+#!/bin/bash
+# art-description: InclinedDuals sim+reco
+# art-type: grid
+# art-include: 21.9/Athena
+# art-output: *.root
+# art-output: *.xml
+# art-output: dcube*
+
+# Fix ordering of output in logfile
+exec 2>&1
+run() { (set -x; exec "$@") }
+
+# Following specify which steps to run.
+dosim=1
+dorec=1 # Reco_tf.py not yet working
+dophy=1 # If dorec=0, set dophy=1 to run InDetPhysValMonitoring over old ESD
+
+# Following specify DCube output directories. Set empty to disable.
+dcube_sim_muons_100GeV_fixref="dcube_sim_muons_100GeV"
+dcube_sim_muons_100GeV_lastref="dcube_sim_muons_100GeV_last"
+dcube_digi_pixel_muons_100GeV_fixref="dcube_digi_pixel_muons_100GeV"
+dcube_digi_pixel_muons_100GeV_lastref="dcube_digi_pixel_muons_100GeV_last"
+dcube_digi_strip_muons_100GeV_fixref="dcube_digi_strip_muons_100GeV"
+dcube_digi_strip_muons_100GeV_lastref="dcube_digi_strip_muons_100GeV_last"
+dcube_rec_muons_100GeV_fixref="dcube_muons_100GeV"
+dcube_rec_muons_100GeV_lastref="dcube_muons_100GeV_last"
+
+artdata=/cvmfs/atlas-nightlies.cern.ch/repo/data/data-art
+#artdata=/eos/atlas/atlascerngroupdisk/data-art/grid-input
+
+name="InclinedDuals"
+script="`basename \"$0\"`"
+
+evnt_muons_100GeV=$artdata/InDetSLHC_Example/inputs/EVNT.09244578.*.pool.root.1
+hits_ref_muons_100GeV=$artdata/InDetSLHC_Example/inputs/InclinedDuals_HITS_mu_100GeV.root
+
+if [ $dosim -ne 0 ]; then
+ hits_muons_100GeV=physval_muons_100GeV.HITS.root
+else
+ hits_muons_100GeV="$hits_ref_muons_100GeV"
+fi
+if [ $dorec -ne 0 ]; then
+ esd_muons_100GeV=physval_muons_100GeV.ESD.root
+ daod_muons_100GeV=physval_muons_100GeV.DAOD_IDTRKVALID.root
+else
+ esd_muons_100GeV=$artdata/InDetSLHC_Example/inputs/InclinedDuals_ESD_mu_100GeV.root
+ daod_muons_100GeV=$artdata/InDetSLHC_Example/inputs/physval_muons_100GeV.DAOD_IDTRKVALID.root
+fi
+#jo=$artdata/InDetSLHC_Example/jobOptions/PhysValITk_jobOptions.py moved to share/
+dcubemon_muons_100GeV_sim=SiHitValid_muons_100GeV.root
+dcubemon_muons_100GeV_digi_pixel=PixelRDOAnalysis_muons_100GeV.root
+dcubemon_muons_100GeV_digi_strip=SCT_RDOAnalysis_muons_100GeV.root
+dcubemon_muons_100GeV_rec=physval_muons_100GeV.root
+dcubecfg_sim=$artdata/InDetSLHC_Example/dcube/config/InclinedDuals_SiHitValid.xml
+dcubecfg_digi_pixel=$artdata/InDetSLHC_Example/dcube/config/InclinedDuals_PixelRDOAnalysis.xml
+dcubecfg_digi_strip=$artdata/InDetSLHC_Example/dcube/config/InclinedDuals_SCT_RDOAnalysis.xml
+dcubecfg_rec=$artdata/InDetSLHC_Example/dcube/config/InclinedDuals_physval.xml
+dcuberef_muons_100GeV_sim=$artdata/InDetSLHC_Example/ReferenceHistograms/InclinedDuals_muons_100GeV_SiHitValid.root
+dcuberef_muons_100GeV_rec=$artdata/InDetSLHC_Example/ReferenceHistograms/InclinedDuals_muons_100GeV_physval.root
+dcuberef_muons_100GeV_digi_pixel=$artdata/InDetSLHC_Example/ReferenceHistograms/PixelRDOAnalysis_muons_100GeV.root
+dcuberef_muons_100GeV_digi_strip=$artdata/InDetSLHC_Example/ReferenceHistograms/SCT_RDOAnalysis_muons_100GeV.root
+art_dcube=/cvmfs/atlas.cern.ch/repo/sw/art/dcube/bin/art-dcube
+lastref_muons_100GeV_dir=last_results_muons_100GeV
+
+if [ \( $dosim -ne 0 -a -n "$dcube_sim_muons_100GeV_lastref" \) -o \( $dophy -ne 0 -a -n "$dcube_rec_muons_100GeV_lastref" \) ]; then
+ run art.py download --user=artprod --dst="$lastref_muons_100GeV_dir" InDetSLHC_Example "$script"
+ run ls -la "$lastref_muons_100GeV_dir"
+fi
+
+dcube() {
+ # Run DCube and print art-result (if $2 is not empty)
+ step="$1" statname="$2" dcubemon="$3" dcubecfg="$4" dcuberef="$5" dcubedir="$6"
+ test -n "$dcubedir" || return
+ run ls -lLU "$art_dcube" "$dcubemon" "$dcubecfg" "$dcuberef"
+ if [ ! -s "$dcubemon" ]; then
+ echo "$script: $step output '$dcubemon' not created. Don't create $dcubedir output." 2>&1
+ test -n "$statname" && echo "art-result: 20 $statname"
+ return
+ fi
+ if [ ! -s "$dcuberef" ]; then
+ echo "$script: $step DCube reference '$dcuberef' not available. Don't create $dcubedir output." 2>&1
+ test -n "$statname" && echo "art-result: 21 $statname"
+ return
+ fi
+ echo "$script: DCube comparison of $step output '$dcubemon' with '$dcuberef' reference"
+ keep=""
+ test "$dcubedir" != "dcube" -a -d "dcube" && keep="dcube_keep_`uuidgen`"
+ test -n "$keep" && run mv -f dcube "$keep"
+ run "$art_dcube" "$name" "$dcubemon" "$dcubecfg" "$dcuberef"
+ dcube_stat=$?
+ test -n "$statname" && echo "art-result: $dcube_stat $statname"
+ test "$dcubedir" != "dcube" && run mv -f dcube "$dcubedir"
+ test -n "$keep" && run mv -f "$keep" dcube
+}
+
+if [ $dosim -ne 0 ]; then
+
+ ## this runs single muons simulation
+ run ls -lL "$evnt_muons_100GeV"
+
+ # Sim step: based on RTT SimInclinedDuals_GMX job:
+ run Sim_tf.py \
+ --inputEVNTFile "$evnt_muons_100GeV" \
+ --outputHITSFile "$hits_muons_100GeV" \
+ --skipEvents 0 \
+ --maxEvents 10000 \
+ --randomSeed 873254 \
+ --geometryVersion ATLAS-P2-ITK-17-06-00_VALIDATION \
+ --conditionsTag OFLCOND-MC15c-SDR-14-04 \
+ --truthStrategy MC15aPlus \
+ --DataRunNumber 242000 \
+ --preInclude all:'InDetSLHC_Example/preInclude.SLHC.py,InDetSLHC_Example/preInclude.NoTRT_NoBCM_NoDBM.py,InDetSLHC_Example/preInclude.SLHC_Setup_InclBrl_4.py,InDetSLHC_Example/preInclude.SLHC_Setup_Strip_GMX.py' \
+ --preExec all:'from InDetSLHC_Example.SLHC_JobProperties import SLHC_Flags; SLHC_Flags.doGMX.set_Value_and_Lock(True); SLHC_Flags.LayoutOption="InclinedAlternative"' \
+ --postInclude all:'PyJobTransforms/UseFrontier.py,InDetSLHC_Example/postInclude.SLHC_Setup_InclBrl_4.py,InDetSLHC_Example/postInclude.SLHC_Setup.py,InDetSLHC_Example/postInclude.SiHitAnalysis.py' \
+ --postExec EVNTtoHITS:'ServiceMgr.DetDescrCnvSvc.DoInitNeighbours = False; from AthenaCommon import CfgGetter;CfgGetter.getService("ISF_MC15aPlusTruthService").BeamPipeTruthStrategies+=["ISF_MCTruthStrategyGroupIDHadInt_MC15"];'\
+#all:'ToolSvc.LayoutTranslationHelper.translateIdentifiersForInclinedAlternative=True;'
+
+ # --preInclude all:'InDetSLHC_Example/preInclude.SLHC.py,InDetSLHC_Example/preInclude.NoTRT_NoBCM_NoDBM.py,InDetSLHC_Example/preInclude.SLHC_Setup_InclBrl_4.py,InDetSLHC_Example/preInclude.SLHC_Setup_Strip_GMX.py' \
+#--preExec all:'from InDetSLHC_Example.SLHC_JobProperties import SLHC_Flags; SLHC_Flags.doGMX.set_Value_and_Lock(True); SLHC_Flags.LayoutOption="InclinedAlternative"' \
+#--postInclude all:'PyJobTransforms/UseFrontier.py,InDetSLHC_Example/postInclude.SLHC_Setup_InclBrl_4.py,InDetSLHC_Example/postInclude.SLHC_Setup.py,InDetSLHC_Example/postInclude.SiHitAnalysis.py' \
+#--postExec EVNTtoHITS:'ServiceMgr.DetDescrCnvSvc.DoInitNeighbours=False; from AthenaCommon import CfgGetter; CfgGetter.getService("ISF_MC15aPlusTruthService").BeamPipeTruthStrategies+=["ISF_MCTruthStrategyGroupIDHadInt_MC15"];'
+
+ echo "art-result: $? sim"
+
+
+
+
+ mv ./SiHitValid.root ./$dcubemon_muons_100GeV_sim
+
+
+
+
+
+ # DCube Sim hit plots
+ dcube Sim_tf sim-plot "$dcubemon_muons_100GeV_sim" "$dcubecfg_sim" "$lastref_muons_100GeV_dir/$dcubemon_muons_100GeV_sim" "$dcube_sim_muons_100GeV_lastref"
+ dcube Sim_tf "" "$dcubemon_muons_100GeV_sim" "$dcubecfg_sim" "$dcuberef_muons_100GeV_sim" "$dcube_sim_muons_100GeV_fixref"
+
+fi
+
+if [ $dorec -ne 0 ]; then
+
+ ## Starting reconstruction for single muons
+ if [ $dosim -ne 0 ] && [ ! -s "$hits_muons_100GeV" ] && [ -s "$hits_ref_muons_100GeV" ]; then
+ echo "$script: Sim_tf output '$hits_muons_100GeV' not created. Run Reco_tf on '$hits_ref_muons_100GeV' instead." 2>&1
+ hits_muons_100GeV="$hits_ref_muons_100GeV"
+ fi
+
+ run ls -lL "$hits_muons_100GeV"
+
+ # Reco step: based on RecoInclinedDuals_GMX RTT job
+ # some preExecs for E2D step are workarounds - should be revisited.
+ run Reco_tf.py \
+ --inputHITSFile "$hits_muons_100GeV" \
+ --outputRDOFile physval_muons_100GeV.RDO.root \
+ --outputESDFile "$esd_muons_100GeV" \
+ --outputAODFile physval_muons_100GeV.AOD.root \
+ --outputDAOD_IDTRKVALIDFile "$daod_muons_100GeV" \
+ --maxEvents -1 \
+ --digiSteeringConf StandardInTimeOnlyTruth \
+ --geometryVersion ATLAS-P2-ITK-17-06-00 \
+ --conditionsTag OFLCOND-MC15c-SDR-14-04 \
+ --DataRunNumber 242000 \
+ --steering doRAWtoALL \
+ --postInclude all:'PyJobTransforms/UseFrontier.py,InDetSLHC_Example/postInclude.SLHC_Setup_InclBrl_4.py,InDetSLHC_Example/postInclude.SLHC_Setup.py' \
+ HITtoRDO:'InDetSLHC_Example/postInclude.SLHC_Digitization_lowthresh.py' \
+ RAWtoALL:'InDetSLHC_Example/postInclude.DigitalClustering.py' \
+ --preInclude all:'InDetSLHC_Example/preInclude.SLHC_Setup_InclBrl_4.py,InDetSLHC_Example/preInclude.SLHC_Setup_Strip_GMX.py,InDetSLHC_Example/preInclude.SLHC_Calorimeter_mu0.py' \
+ HITtoRDO:'InDetSLHC_Example/preInclude.SLHC.py,InDetSLHC_Example/preInclude.SiliconOnly.py' \
+ default:'InDetSLHC_Example/preInclude.SLHC.SiliconOnly.Reco.py,InDetSLHC_Example/SLHC_Setup_Reco_TrackingGeometry_GMX.py' \
+ RDOMergeAthenaMP:'InDetSLHC_Example/preInclude.SLHC.py,InDetSLHC_Example/preInclude.SiliconOnly.pyInDetSLHC_Example/SLHC_Setup_Reco_TrackingGeometry_GMX.py' \
+ POOLMergeAthenaMPAOD0:'InDetSLHC_Example/preInclude.SLHC.SiliconOnly.Ana.py,InDetSLHC_Example/SLHC_Setup_Reco_Alpine.py' \
+ POOLMergeAthenaMPDAODIDTRKVALID0:'InDetSLHC_Example/preInclude.SLHC.SiliconOnly.Ana.py,InDetSLHC_Example/SLHC_Setup_Reco_Alpine.py' \
+ --preExec all:'from AthenaCommon.GlobalFlags import globalflags; globalflags.DataSource.set_Value_and_Lock("geant4"); from InDetSLHC_Example.SLHC_JobProperties import SLHC_Flags; SLHC_Flags.doGMX.set_Value_and_Lock(True); SLHC_Flags.LayoutOption="InclinedAlternative";' \
+ HITtoRDO:'from Digitization.DigitizationFlags import digitizationFlags; digitizationFlags.doInDetNoise.set_Value_and_Lock(False); digitizationFlags.doBichselSimulation.set_Value_and_Lock(False); digitizationFlags.overrideMetadata+=["SimLayout","PhysicsList"];' \
+ RAWtoALL:'from InDetRecExample.InDetJobProperties import InDetFlags; InDetFlags.doStandardPlots.set_Value_and_Lock(True);from PixelConditionsServices.PixelConditionsServicesConf import PixelCalibSvc;ServiceMgr +=PixelCalibSvc();InDetFlags.useDCS.set_Value_and_Lock(True);ServiceMgr.PixelCalibSvc.DisableDB=True;from InDetPrepRawDataToxAOD.InDetDxAODJobProperties import InDetDxAODFlags;InDetDxAODFlags.DumpLArCollisionTime.set_Value_and_Lock(False);InDetDxAODFlags.DumpSctInfo.set_Value_and_Lock(True);InDetDxAODFlags.ThinHitsOnTrack.set_Value_and_Lock(False)' \
+ ESDtoDPD:'rec.DPDMakerScripts.set_Value_and_Lock(["PrimaryDPDMaker/PrimaryDPDMaker.py"]);from InDetRecExample.InDetJobProperties import InDetFlags;InDetFlags.useDCS.set_Value_and_Lock(True);from PixelConditionsServices.PixelConditionsServicesConf import PixelCalibSvc;ServiceMgr +=PixelCalibSvc();ServiceMgr.PixelCalibSvc.DisableDB=True' \
+ --postExec all:'ToolSvc.LayoutTranslationHelper.translateIdentifiersForInclinedAlternative=True;'\
+ HITtoRDO:'pixeldigi.EnableSpecialPixels=False; CfgMgr.MessageSvc().setError+=["HepMcParticleLink"];' \
+ RAWtoALL:'ToolSvc.InDetSCT_ClusteringTool.useRowInformation=True; from AthenaCommon.AppMgr import ToolSvc; ToolSvc.InDetTrackSummaryTool.OutputLevel=INFO;from InDetPhysValMonitoring.InDetPhysValMonitoringConf import InDetPhysValDecoratorAlg;decorators = InDetPhysValDecoratorAlg();topSequence += decorators'
+
+
+ reco_stat=$?
+ echo "art-result: $reco_stat reco"
+ if [ "$reco_stat" -ne 0 ]; then
+ echo "$script: Reco_tf.py isn't working yet. Remove jobReport.json to prevent pilot declaring a failed job."
+ run rm -f jobReport.json
+ fi
+
+ mv ./PixelRDOAnalysis.root ./$dcubemon_muons_100GeV_digi_pixel
+ mv ./SCT_RDOAnalysis.root ./$dcubemon_muons_100GeV_digi_strip
+
+ # DCube digi plots
+ dcube Reco_tf digi-plot "$dcubemon_muons_100GeV_digi_pixel" "$dcubecfg_digi_pixel" "$lastref_muons_100GeV_dir/$dcubemon_muons_100GeV_digi_pixel" "$dcube_digi_pixel_muons_100GeV_lastref"
+ dcube Reco_tf "" "$dcubemon_muons_100GeV_digi_pixel" "$dcubecfg_digi_pixel" "$dcuberef_muons_100GeV_digi_pixel" "$dcube_digi_pixel_muons_100GeV_fixref"
+
+ dcube Reco_tf digi-plot "$dcubemon_muons_100GeV_digi_strip" "$dcubecfg_digi_strip" "$lastref_muons_100GeV_dir/$dcubemon_muons_100GeV_digi_strip" "$dcube_digi_strip_muons_100GeV_lastref"
+ dcube Reco_tf "" "$dcubemon_muons_100GeV_digi_strip" "$dcubecfg_digi_strip" "$dcuberef_muons_100GeV_digi_strip" "$dcube_digi_strip_muons_100GeV_fixref"
+
+fi
+
+if [ $dophy -ne 0 ]; then
+
+ ## phys validation and dcube for single muons
+ run ls -lLU "$esd_muons_100GeV"
+
+ if [ ! -s "$esd_muons_100GeV" ]; then
+ echo "$script: Reco_tf output '$esd_muons_100GeV' not created - exit" 2>&1
+ echo "art-result: 21 physval"
+# test -n "$dcube_rec_fixref" && echo "art-result: 22 plot-fixref"
+ test -n "$dcube_rec_muons_100GeV_lastref" && echo "art-result: 22 plot"
+ exit
+ fi
+
+ # Run InDetPhysValMonitoring on DAOD.
+ # It should eventually be possible to include this in the reco step, but this needs Reco_tf to support the ITk IDPVM setup.
+ ( set -x
+ inputDAOD_IDTRKVALIDFile="$daod_muons_100GeV" exec athena.py InDetSLHC_Example/PhysValITk_jobOptions.py
+ )
+ echo "art-result: $? physval"
+
+ mv ./physval.root ./$dcubemon_muons_100GeV_rec
+
+ # DCube InDetPhysValMonitoring performance plots
+ dcube InDetPhysValMonitoring plot "$dcubemon_muons_100GeV_rec" "$dcubecfg_rec" "$lastref_muons_100GeV_dir/$dcubemon_muons_100GeV_rec" "$dcube_rec_muons_100GeV_lastref"
+ dcube InDetPhysValMonitoring "" "$dcubemon_muons_100GeV_rec" "$dcubecfg_rec" "$dcuberef_muons_100GeV_rec" "$dcube_rec_muons_100GeV_fixref"
+
+fi
diff --git a/InnerDetector/InDetExample/InDetSLHC_Example/test/test_InclinedAlternative_17-06-00_single_muons_10GeV.sh b/InnerDetector/InDetExample/InDetSLHC_Example/test/test_InclinedAlternative_17-06-00_single_muons_10GeV.sh
new file mode 100755
index 0000000000000000000000000000000000000000..0628d7c9273757cfb2bf70228d53c5763a39bd55
--- /dev/null
+++ b/InnerDetector/InDetExample/InDetSLHC_Example/test/test_InclinedAlternative_17-06-00_single_muons_10GeV.sh
@@ -0,0 +1,227 @@
+#!/bin/bash
+# art-description: InclinedDuals sim+reco
+# art-type: grid
+# art-include: 21.9/Athena
+# art-output: *.root
+# art-output: *.xml
+# art-output: dcube*
+
+# Fix ordering of output in logfile
+exec 2>&1
+run() { (set -x; exec "$@") }
+
+# Following specify which steps to run.
+dosim=1
+dorec=1 # Reco_tf.py not yet working
+dophy=1 # If dorec=0, set dophy=1 to run InDetPhysValMonitoring over old ESD
+
+# Following specify DCube output directories. Set empty to disable.
+dcube_sim_muons_10GeV_fixref="dcube_sim_muons_10GeV"
+dcube_sim_muons_10GeV_lastref="dcube_sim_muons_10GeV_last"
+dcube_digi_pixel_muons_10GeV_fixref="dcube_digi_pixel_muons_10GeV"
+dcube_digi_pixel_muons_10GeV_lastref="dcube_digi_pixel_muons_10GeV_last"
+dcube_digi_strip_muons_10GeV_fixref="dcube_digi_strip_muons_10GeV"
+dcube_digi_strip_muons_10GeV_lastref="dcube_digi_strip_muons_10GeV_last"
+dcube_rec_muons_10GeV_fixref="dcube_muons_10GeV"
+dcube_rec_muons_10GeV_lastref="dcube_muons_10GeV_last"
+
+artdata=/cvmfs/atlas-nightlies.cern.ch/repo/data/data-art
+#artdata=/eos/atlas/atlascerngroupdisk/data-art/grid-input
+
+name="InclinedDuals"
+script="`basename \"$0\"`"
+
+evnt_muons_10GeV=$artdata/InDetSLHC_Example/inputs/EVNT.09244573.*.pool.root.1
+hits_ref_muons_10GeV=$artdata/InDetSLHC_Example/inputs/InclinedDuals_HITS_mu_10GeV.root
+
+if [ $dosim -ne 0 ]; then
+ hits_muons_10GeV=physval_muons_10GeV.HITS.root
+else
+ hits_muons_10GeV="$hits_ref_muons_10GeV"
+fi
+if [ $dorec -ne 0 ]; then
+ esd_muons_10GeV=physval_muons_10GeV.ESD.root
+ daod_muons_10GeV=physval_muons_10GeV.DAOD_IDTRKVALID.root
+else
+ esd_muons_10GeV=$artdata/InDetSLHC_Example/inputs/InclinedDuals_ESD_mu_10GeV.root
+ daod_muons_10GeV=$artdata/InDetSLHC_Example/inputs/physval_muons_10GeV.DAOD_IDTRKVALID.root
+fi
+#jo=$artdata/InDetSLHC_Example/jobOptions/PhysValITk_jobOptions.py moved to share/
+dcubemon_muons_10GeV_sim=SiHitValid_muons_10GeV.root
+dcubemon_muons_10GeV_digi_pixel=PixelRDOAnalysis_muons_10GeV.root
+dcubemon_muons_10GeV_digi_strip=SCT_RDOAnalysis_muons_10GeV.root
+dcubemon_muons_10GeV_rec=physval_muons_10GeV.root
+dcubecfg_sim=$artdata/InDetSLHC_Example/dcube/config/InclinedDuals_SiHitValid.xml
+dcubecfg_digi_pixel=$artdata/InDetSLHC_Example/dcube/config/InclinedDuals_PixelRDOAnalysis.xml
+dcubecfg_digi_strip=$artdata/InDetSLHC_Example/dcube/config/InclinedDuals_SCT_RDOAnalysis.xml
+dcubecfg_rec=$artdata/InDetSLHC_Example/dcube/config/InclinedDuals_physval.xml
+dcuberef_muons_10GeV_sim=$artdata/InDetSLHC_Example/ReferenceHistograms/InclinedDuals_muons_10GeV_SiHitValid.root
+dcuberef_muons_10GeV_rec=$artdata/InDetSLHC_Example/ReferenceHistograms/InclinedDuals_muons_10GeV_physval.root
+dcuberef_muons_10GeV_digi_pixel=$artdata/InDetSLHC_Example/ReferenceHistograms/PixelRDOAnalysis_muons_10GeV.root
+dcuberef_muons_10GeV_digi_strip=$artdata/InDetSLHC_Example/ReferenceHistograms/SCT_RDOAnalysis_muons_10GeV.root
+art_dcube=/cvmfs/atlas.cern.ch/repo/sw/art/dcube/bin/art-dcube
+lastref_muons_10GeV_dir=last_results_muons_10GeV
+
+if [ \( $dosim -ne 0 -a -n "$dcube_sim_muons_10GeV_lastref" \) -o \( $dophy -ne 0 -a -n "$dcube_rec_muons_10GeV_lastref" \) ]; then
+ run art.py download --user=artprod --dst="$lastref_muons_10GeV_dir" InDetSLHC_Example "$script"
+ run ls -la "$lastref_muons_10GeV_dir"
+fi
+
+dcube() {
+ # Run DCube and print art-result (if $2 is not empty)
+ step="$1" statname="$2" dcubemon="$3" dcubecfg="$4" dcuberef="$5" dcubedir="$6"
+ test -n "$dcubedir" || return
+ run ls -lLU "$art_dcube" "$dcubemon" "$dcubecfg" "$dcuberef"
+ if [ ! -s "$dcubemon" ]; then
+ echo "$script: $step output '$dcubemon' not created. Don't create $dcubedir output." 2>&1
+ test -n "$statname" && echo "art-result: 20 $statname"
+ return
+ fi
+ if [ ! -s "$dcuberef" ]; then
+ echo "$script: $step DCube reference '$dcuberef' not available. Don't create $dcubedir output." 2>&1
+ test -n "$statname" && echo "art-result: 21 $statname"
+ return
+ fi
+ echo "$script: DCube comparison of $step output '$dcubemon' with '$dcuberef' reference"
+ keep=""
+ test "$dcubedir" != "dcube" -a -d "dcube" && keep="dcube_keep_`uuidgen`"
+ test -n "$keep" && run mv -f dcube "$keep"
+ run "$art_dcube" "$name" "$dcubemon" "$dcubecfg" "$dcuberef"
+ dcube_stat=$?
+ test -n "$statname" && echo "art-result: $dcube_stat $statname"
+ test "$dcubedir" != "dcube" && run mv -f dcube "$dcubedir"
+ test -n "$keep" && run mv -f "$keep" dcube
+}
+
+if [ $dosim -ne 0 ]; then
+
+ ## this runs single muons simulation
+ run ls -lL "$evnt_muons_10GeV"
+
+ # Sim step: based on RTT SimInclinedDuals_GMX job:
+ run Sim_tf.py \
+ --inputEVNTFile "$evnt_muons_10GeV" \
+ --outputHITSFile "$hits_muons_10GeV" \
+ --skipEvents 0 \
+ --maxEvents 10000 \
+ --randomSeed 873254 \
+ --geometryVersion ATLAS-P2-ITK-17-06-00_VALIDATION \
+ --conditionsTag OFLCOND-MC15c-SDR-14-04 \
+ --truthStrategy MC15aPlus \
+ --DataRunNumber 242000 \
+ --preInclude all:'InDetSLHC_Example/preInclude.SLHC.py,InDetSLHC_Example/preInclude.NoTRT_NoBCM_NoDBM.py,InDetSLHC_Example/preInclude.SLHC_Setup_InclBrl_4.py,InDetSLHC_Example/preInclude.SLHC_Setup_Strip_GMX.py' \
+ --preExec all:'from InDetSLHC_Example.SLHC_JobProperties import SLHC_Flags; SLHC_Flags.doGMX.set_Value_and_Lock(True); SLHC_Flags.LayoutOption="InclinedAlternative"' \
+ --postInclude all:'PyJobTransforms/UseFrontier.py,InDetSLHC_Example/postInclude.SLHC_Setup_InclBrl_4.py,InDetSLHC_Example/postInclude.SLHC_Setup.py,InDetSLHC_Example/postInclude.SiHitAnalysis.py' \
+ --postExec EVNTtoHITS:'ServiceMgr.DetDescrCnvSvc.DoInitNeighbours = False; from AthenaCommon import CfgGetter;CfgGetter.getService("ISF_MC15aPlusTruthService").BeamPipeTruthStrategies+=["ISF_MCTruthStrategyGroupIDHadInt_MC15"];'\
+#all:'ToolSvc.LayoutTranslationHelper.translateIdentifiersForInclinedAlternative=True;'
+
+ # --preInclude all:'InDetSLHC_Example/preInclude.SLHC.py,InDetSLHC_Example/preInclude.NoTRT_NoBCM_NoDBM.py,InDetSLHC_Example/preInclude.SLHC_Setup_InclBrl_4.py,InDetSLHC_Example/preInclude.SLHC_Setup_Strip_GMX.py' \
+#--preExec all:'from InDetSLHC_Example.SLHC_JobProperties import SLHC_Flags; SLHC_Flags.doGMX.set_Value_and_Lock(True); SLHC_Flags.LayoutOption="InclinedAlternative"' \
+#--postInclude all:'PyJobTransforms/UseFrontier.py,InDetSLHC_Example/postInclude.SLHC_Setup_InclBrl_4.py,InDetSLHC_Example/postInclude.SLHC_Setup.py,InDetSLHC_Example/postInclude.SiHitAnalysis.py' \
+#--postExec EVNTtoHITS:'ServiceMgr.DetDescrCnvSvc.DoInitNeighbours=False; from AthenaCommon import CfgGetter; CfgGetter.getService("ISF_MC15aPlusTruthService").BeamPipeTruthStrategies+=["ISF_MCTruthStrategyGroupIDHadInt_MC15"];'
+
+ echo "art-result: $? sim"
+
+
+
+
+ mv ./SiHitValid.root ./$dcubemon_muons_10GeV_sim
+
+
+
+
+
+ # DCube Sim hit plots
+ dcube Sim_tf sim-plot "$dcubemon_muons_10GeV_sim" "$dcubecfg_sim" "$lastref_muons_10GeV_dir/$dcubemon_muons_10GeV_sim" "$dcube_sim_muons_10GeV_lastref"
+ dcube Sim_tf "" "$dcubemon_muons_10GeV_sim" "$dcubecfg_sim" "$dcuberef_muons_10GeV_sim" "$dcube_sim_muons_10GeV_fixref"
+
+fi
+
+if [ $dorec -ne 0 ]; then
+
+ ## Starting reconstruction for single muons
+ if [ $dosim -ne 0 ] && [ ! -s "$hits_muons_10GeV" ] && [ -s "$hits_ref_muons_10GeV" ]; then
+ echo "$script: Sim_tf output '$hits_muons_10GeV' not created. Run Reco_tf on '$hits_ref_muons_10GeV' instead." 2>&1
+ hits_muons_10GeV="$hits_ref_muons_10GeV"
+ fi
+
+ run ls -lL "$hits_muons_10GeV"
+
+ # Reco step: based on RecoInclinedDuals_GMX RTT job
+ # some preExecs for E2D step are workarounds - should be revisited.
+ run Reco_tf.py \
+ --inputHITSFile "$hits_muons_10GeV" \
+ --outputRDOFile physval_muons_10GeV.RDO.root \
+ --outputESDFile "$esd_muons_10GeV" \
+ --outputAODFile physval_muons_10GeV.AOD.root \
+ --outputDAOD_IDTRKVALIDFile "$daod_muons_10GeV" \
+ --maxEvents -1 \
+ --digiSteeringConf StandardInTimeOnlyTruth \
+ --geometryVersion ATLAS-P2-ITK-17-06-00 \
+ --conditionsTag OFLCOND-MC15c-SDR-14-04 \
+ --DataRunNumber 242000 \
+ --steering doRAWtoALL \
+ --postInclude all:'PyJobTransforms/UseFrontier.py,InDetSLHC_Example/postInclude.SLHC_Setup_InclBrl_4.py,InDetSLHC_Example/postInclude.SLHC_Setup.py' \
+ HITtoRDO:'InDetSLHC_Example/postInclude.SLHC_Digitization_lowthresh.py' \
+ RAWtoALL:'InDetSLHC_Example/postInclude.DigitalClustering.py' \
+ --preInclude all:'InDetSLHC_Example/preInclude.SLHC_Setup_InclBrl_4.py,InDetSLHC_Example/preInclude.SLHC_Setup_Strip_GMX.py,InDetSLHC_Example/preInclude.SLHC_Calorimeter_mu0.py' \
+ HITtoRDO:'InDetSLHC_Example/preInclude.SLHC.py,InDetSLHC_Example/preInclude.SiliconOnly.py' \
+ default:'InDetSLHC_Example/preInclude.SLHC.SiliconOnly.Reco.py,InDetSLHC_Example/SLHC_Setup_Reco_TrackingGeometry_GMX.py' \
+ RDOMergeAthenaMP:'InDetSLHC_Example/preInclude.SLHC.py,InDetSLHC_Example/preInclude.SiliconOnly.pyInDetSLHC_Example/SLHC_Setup_Reco_TrackingGeometry_GMX.py' \
+ POOLMergeAthenaMPAOD0:'InDetSLHC_Example/preInclude.SLHC.SiliconOnly.Ana.py,InDetSLHC_Example/SLHC_Setup_Reco_Alpine.py' \
+ POOLMergeAthenaMPDAODIDTRKVALID0:'InDetSLHC_Example/preInclude.SLHC.SiliconOnly.Ana.py,InDetSLHC_Example/SLHC_Setup_Reco_Alpine.py' \
+ --preExec all:'from AthenaCommon.GlobalFlags import globalflags; globalflags.DataSource.set_Value_and_Lock("geant4"); from InDetSLHC_Example.SLHC_JobProperties import SLHC_Flags; SLHC_Flags.doGMX.set_Value_and_Lock(True); SLHC_Flags.LayoutOption="InclinedAlternative";' \
+ HITtoRDO:'from Digitization.DigitizationFlags import digitizationFlags; digitizationFlags.doInDetNoise.set_Value_and_Lock(False); digitizationFlags.doBichselSimulation.set_Value_and_Lock(False); digitizationFlags.overrideMetadata+=["SimLayout","PhysicsList"];' \
+ RAWtoALL:'from InDetRecExample.InDetJobProperties import InDetFlags; InDetFlags.doStandardPlots.set_Value_and_Lock(True);from PixelConditionsServices.PixelConditionsServicesConf import PixelCalibSvc;ServiceMgr +=PixelCalibSvc();InDetFlags.useDCS.set_Value_and_Lock(True);ServiceMgr.PixelCalibSvc.DisableDB=True;from InDetPrepRawDataToxAOD.InDetDxAODJobProperties import InDetDxAODFlags;InDetDxAODFlags.DumpLArCollisionTime.set_Value_and_Lock(False);InDetDxAODFlags.DumpSctInfo.set_Value_and_Lock(True);InDetDxAODFlags.ThinHitsOnTrack.set_Value_and_Lock(False)' \
+ ESDtoDPD:'rec.DPDMakerScripts.set_Value_and_Lock(["PrimaryDPDMaker/PrimaryDPDMaker.py"]);from InDetRecExample.InDetJobProperties import InDetFlags;InDetFlags.useDCS.set_Value_and_Lock(True);from PixelConditionsServices.PixelConditionsServicesConf import PixelCalibSvc;ServiceMgr +=PixelCalibSvc();ServiceMgr.PixelCalibSvc.DisableDB=True' \
+ --postExec all:'ToolSvc.LayoutTranslationHelper.translateIdentifiersForInclinedAlternative=True;'\
+ HITtoRDO:'pixeldigi.EnableSpecialPixels=False; CfgMgr.MessageSvc().setError+=["HepMcParticleLink"];' \
+ RAWtoALL:'ToolSvc.InDetSCT_ClusteringTool.useRowInformation=True; from AthenaCommon.AppMgr import ToolSvc; ToolSvc.InDetTrackSummaryTool.OutputLevel=INFO;from InDetPhysValMonitoring.InDetPhysValMonitoringConf import InDetPhysValDecoratorAlg;decorators = InDetPhysValDecoratorAlg();topSequence += decorators'
+
+
+ reco_stat=$?
+ echo "art-result: $reco_stat reco"
+ if [ "$reco_stat" -ne 0 ]; then
+ echo "$script: Reco_tf.py isn't working yet. Remove jobReport.json to prevent pilot declaring a failed job."
+ run rm -f jobReport.json
+ fi
+
+ mv ./PixelRDOAnalysis.root ./$dcubemon_muons_10GeV_digi_pixel
+ mv ./SCT_RDOAnalysis.root ./$dcubemon_muons_10GeV_digi_strip
+
+ # DCube digi plots
+ dcube Reco_tf digi-plot "$dcubemon_muons_10GeV_digi_pixel" "$dcubecfg_digi_pixel" "$lastref_muons_10GeV_dir/$dcubemon_muons_10GeV_digi_pixel" "$dcube_digi_pixel_muons_10GeV_lastref"
+ dcube Reco_tf "" "$dcubemon_muons_10GeV_digi_pixel" "$dcubecfg_digi_pixel" "$dcuberef_muons_10GeV_digi_pixel" "$dcube_digi_pixel_muons_10GeV_fixref"
+
+ dcube Reco_tf digi-plot "$dcubemon_muons_10GeV_digi_strip" "$dcubecfg_digi_strip" "$lastref_muons_10GeV_dir/$dcubemon_muons_10GeV_digi_strip" "$dcube_digi_strip_muons_10GeV_lastref"
+ dcube Reco_tf "" "$dcubemon_muons_10GeV_digi_strip" "$dcubecfg_digi_strip" "$dcuberef_muons_10GeV_digi_strip" "$dcube_digi_strip_muons_10GeV_fixref"
+
+fi
+
+if [ $dophy -ne 0 ]; then
+
+ ## phys validation and dcube for single muons
+ run ls -lLU "$esd_muons_10GeV"
+
+ if [ ! -s "$esd_muons_10GeV" ]; then
+ echo "$script: Reco_tf output '$esd_muons_10GeV' not created - exit" 2>&1
+ echo "art-result: 21 physval"
+# test -n "$dcube_rec_fixref" && echo "art-result: 22 plot-fixref"
+ test -n "$dcube_rec_muons_10GeV_lastref" && echo "art-result: 22 plot"
+ exit
+ fi
+
+ # Run InDetPhysValMonitoring on DAOD.
+ # It should eventually be possible to include this in the reco step, but this needs Reco_tf to support the ITk IDPVM setup.
+ ( set -x
+ inputDAOD_IDTRKVALIDFile="$daod_muons_10GeV" exec athena.py InDetSLHC_Example/PhysValITk_jobOptions.py
+ )
+ echo "art-result: $? physval"
+
+ mv ./physval.root ./$dcubemon_muons_10GeV_rec
+
+ # DCube InDetPhysValMonitoring performance plots
+ dcube InDetPhysValMonitoring plot "$dcubemon_muons_10GeV_rec" "$dcubecfg_rec" "$lastref_muons_10GeV_dir/$dcubemon_muons_10GeV_rec" "$dcube_rec_muons_10GeV_lastref"
+ dcube InDetPhysValMonitoring "" "$dcubemon_muons_10GeV_rec" "$dcubecfg_rec" "$dcuberef_muons_10GeV_rec" "$dcube_rec_muons_10GeV_fixref"
+
+fi
diff --git a/InnerDetector/InDetExample/InDetSLHC_Example/test/test_InclinedAlternative_17-06-00_single_muons_1GeV.sh b/InnerDetector/InDetExample/InDetSLHC_Example/test/test_InclinedAlternative_17-06-00_single_muons_1GeV.sh
new file mode 100755
index 0000000000000000000000000000000000000000..499953b25246687b4dd737e0ea365ab74621595d
--- /dev/null
+++ b/InnerDetector/InDetExample/InDetSLHC_Example/test/test_InclinedAlternative_17-06-00_single_muons_1GeV.sh
@@ -0,0 +1,227 @@
+#!/bin/bash
+# art-description: InclinedDuals sim+reco
+# art-type: grid
+# art-include: 21.9/Athena
+# art-output: *.root
+# art-output: *.xml
+# art-output: dcube*
+
+# Fix ordering of output in logfile
+exec 2>&1
+run() { (set -x; exec "$@") }
+
+# Following specify which steps to run.
+dosim=1
+dorec=1 # Reco_tf.py not yet working
+dophy=1 # If dorec=0, set dophy=1 to run InDetPhysValMonitoring over old ESD
+
+# Following specify DCube output directories. Set empty to disable.
+dcube_sim_muons_1GeV_fixref="dcube_sim_muons_1GeV"
+dcube_sim_muons_1GeV_lastref="dcube_sim_muons_1GeV_last"
+dcube_digi_pixel_muons_1GeV_fixref="dcube_digi_pixel_muons_1GeV"
+dcube_digi_pixel_muons_1GeV_lastref="dcube_digi_pixel_muons_1GeV_last"
+dcube_digi_strip_muons_1GeV_fixref="dcube_digi_strip_muons_1GeV"
+dcube_digi_strip_muons_1GeV_lastref="dcube_digi_strip_muons_1GeV_last"
+dcube_rec_muons_1GeV_fixref="dcube_muons_1GeV"
+dcube_rec_muons_1GeV_lastref="dcube_muons_1GeV_last"
+
+artdata=/cvmfs/atlas-nightlies.cern.ch/repo/data/data-art
+#artdata=/eos/atlas/atlascerngroupdisk/data-art/grid-input
+
+name="InclinedDuals"
+script="`basename \"$0\"`"
+
+evnt_muons_1GeV=$artdata/InDetSLHC_Example/inputs/EVNT.09244569.*.pool.root.1
+hits_ref_muons_1GeV=$artdata/InDetSLHC_Example/inputs/InclinedDuals_HITS_mu_1GeV.root
+
+if [ $dosim -ne 0 ]; then
+ hits_muons_1GeV=physval_muons_1GeV.HITS.root
+else
+ hits_muons_1GeV="$hits_ref_muons_1GeV"
+fi
+if [ $dorec -ne 0 ]; then
+ esd_muons_1GeV=physval_muons_1GeV.ESD.root
+ daod_muons_1GeV=physval_muons_1GeV.DAOD_IDTRKVALID.root
+else
+ esd_muons_1GeV=$artdata/InDetSLHC_Example/inputs/InclinedDuals_ESD_mu_1GeV.root
+ daod_muons_1GeV=$artdata/InDetSLHC_Example/inputs/physval_muons_1GeV.DAOD_IDTRKVALID.root
+fi
+#jo=$artdata/InDetSLHC_Example/jobOptions/PhysValITk_jobOptions.py moved to share/
+dcubemon_muons_1GeV_sim=SiHitValid_muons_1GeV.root
+dcubemon_muons_1GeV_digi_pixel=PixelRDOAnalysis_muons_1GeV.root
+dcubemon_muons_1GeV_digi_strip=SCT_RDOAnalysis_muons_1GeV.root
+dcubemon_muons_1GeV_rec=physval_muons_1GeV.root
+dcubecfg_sim=$artdata/InDetSLHC_Example/dcube/config/InclinedDuals_SiHitValid.xml
+dcubecfg_digi_pixel=$artdata/InDetSLHC_Example/dcube/config/InclinedDuals_PixelRDOAnalysis.xml
+dcubecfg_digi_strip=$artdata/InDetSLHC_Example/dcube/config/InclinedDuals_SCT_RDOAnalysis.xml
+dcubecfg_rec=$artdata/InDetSLHC_Example/dcube/config/InclinedDuals_physval.xml
+dcuberef_muons_1GeV_sim=$artdata/InDetSLHC_Example/ReferenceHistograms/InclinedDuals_muons_1GeV_SiHitValid.root
+dcuberef_muons_1GeV_rec=$artdata/InDetSLHC_Example/ReferenceHistograms/InclinedDuals_muons_1GeV_physval.root
+dcuberef_muons_1GeV_digi_pixel=$artdata/InDetSLHC_Example/ReferenceHistograms/PixelRDOAnalysis_muons_1GeV.root
+dcuberef_muons_1GeV_digi_strip=$artdata/InDetSLHC_Example/ReferenceHistograms/SCT_RDOAnalysis_muons_1GeV.root
+art_dcube=/cvmfs/atlas.cern.ch/repo/sw/art/dcube/bin/art-dcube
+lastref_muons_1GeV_dir=last_results_muons_1GeV
+
+if [ \( $dosim -ne 0 -a -n "$dcube_sim_muons_1GeV_lastref" \) -o \( $dophy -ne 0 -a -n "$dcube_rec_muons_1GeV_lastref" \) ]; then
+ run art.py download --user=artprod --dst="$lastref_muons_1GeV_dir" InDetSLHC_Example "$script"
+ run ls -la "$lastref_muons_1GeV_dir"
+fi
+
+dcube() {
+ # Run DCube and print art-result (if $2 is not empty)
+ step="$1" statname="$2" dcubemon="$3" dcubecfg="$4" dcuberef="$5" dcubedir="$6"
+ test -n "$dcubedir" || return
+ run ls -lLU "$art_dcube" "$dcubemon" "$dcubecfg" "$dcuberef"
+ if [ ! -s "$dcubemon" ]; then
+ echo "$script: $step output '$dcubemon' not created. Don't create $dcubedir output." 2>&1
+ test -n "$statname" && echo "art-result: 20 $statname"
+ return
+ fi
+ if [ ! -s "$dcuberef" ]; then
+ echo "$script: $step DCube reference '$dcuberef' not available. Don't create $dcubedir output." 2>&1
+ test -n "$statname" && echo "art-result: 21 $statname"
+ return
+ fi
+ echo "$script: DCube comparison of $step output '$dcubemon' with '$dcuberef' reference"
+ keep=""
+ test "$dcubedir" != "dcube" -a -d "dcube" && keep="dcube_keep_`uuidgen`"
+ test -n "$keep" && run mv -f dcube "$keep"
+ run "$art_dcube" "$name" "$dcubemon" "$dcubecfg" "$dcuberef"
+ dcube_stat=$?
+ test -n "$statname" && echo "art-result: $dcube_stat $statname"
+ test "$dcubedir" != "dcube" && run mv -f dcube "$dcubedir"
+ test -n "$keep" && run mv -f "$keep" dcube
+}
+
+if [ $dosim -ne 0 ]; then
+
+ ## this runs single muons simulation
+ run ls -lL "$evnt_muons_1GeV"
+
+ # Sim step: based on RTT SimInclinedDuals_GMX job:
+ run Sim_tf.py \
+ --inputEVNTFile "$evnt_muons_1GeV" \
+ --outputHITSFile "$hits_muons_1GeV" \
+ --skipEvents 0 \
+ --maxEvents 10000 \
+ --randomSeed 873254 \
+ --geometryVersion ATLAS-P2-ITK-17-06-00_VALIDATION \
+ --conditionsTag OFLCOND-MC15c-SDR-14-04 \
+ --truthStrategy MC15aPlus \
+ --DataRunNumber 242000 \
+ --preInclude all:'InDetSLHC_Example/preInclude.SLHC.py,InDetSLHC_Example/preInclude.NoTRT_NoBCM_NoDBM.py,InDetSLHC_Example/preInclude.SLHC_Setup_InclBrl_4.py,InDetSLHC_Example/preInclude.SLHC_Setup_Strip_GMX.py' \
+ --preExec all:'from InDetSLHC_Example.SLHC_JobProperties import SLHC_Flags; SLHC_Flags.doGMX.set_Value_and_Lock(True); SLHC_Flags.LayoutOption="InclinedAlternative"' \
+ --postInclude all:'PyJobTransforms/UseFrontier.py,InDetSLHC_Example/postInclude.SLHC_Setup_InclBrl_4.py,InDetSLHC_Example/postInclude.SLHC_Setup.py,InDetSLHC_Example/postInclude.SiHitAnalysis.py' \
+ --postExec EVNTtoHITS:'ServiceMgr.DetDescrCnvSvc.DoInitNeighbours = False; from AthenaCommon import CfgGetter;CfgGetter.getService("ISF_MC15aPlusTruthService").BeamPipeTruthStrategies+=["ISF_MCTruthStrategyGroupIDHadInt_MC15"];'\
+#all:'ToolSvc.LayoutTranslationHelper.translateIdentifiersForInclinedAlternative=True;'
+
+ # --preInclude all:'InDetSLHC_Example/preInclude.SLHC.py,InDetSLHC_Example/preInclude.NoTRT_NoBCM_NoDBM.py,InDetSLHC_Example/preInclude.SLHC_Setup_InclBrl_4.py,InDetSLHC_Example/preInclude.SLHC_Setup_Strip_GMX.py' \
+#--preExec all:'from InDetSLHC_Example.SLHC_JobProperties import SLHC_Flags; SLHC_Flags.doGMX.set_Value_and_Lock(True); SLHC_Flags.LayoutOption="InclinedAlternative"' \
+#--postInclude all:'PyJobTransforms/UseFrontier.py,InDetSLHC_Example/postInclude.SLHC_Setup_InclBrl_4.py,InDetSLHC_Example/postInclude.SLHC_Setup.py,InDetSLHC_Example/postInclude.SiHitAnalysis.py' \
+#--postExec EVNTtoHITS:'ServiceMgr.DetDescrCnvSvc.DoInitNeighbours=False; from AthenaCommon import CfgGetter; CfgGetter.getService("ISF_MC15aPlusTruthService").BeamPipeTruthStrategies+=["ISF_MCTruthStrategyGroupIDHadInt_MC15"];'
+
+ echo "art-result: $? sim"
+
+
+
+
+ mv ./SiHitValid.root ./$dcubemon_muons_1GeV_sim
+
+
+
+
+
+ # DCube Sim hit plots
+ dcube Sim_tf sim-plot "$dcubemon_muons_1GeV_sim" "$dcubecfg_sim" "$lastref_muons_1GeV_dir/$dcubemon_muons_1GeV_sim" "$dcube_sim_muons_1GeV_lastref"
+ dcube Sim_tf "" "$dcubemon_muons_1GeV_sim" "$dcubecfg_sim" "$dcuberef_muons_1GeV_sim" "$dcube_sim_muons_1GeV_fixref"
+
+fi
+
+if [ $dorec -ne 0 ]; then
+
+ ## Starting reconstruction for single muons
+ if [ $dosim -ne 0 ] && [ ! -s "$hits_muons_1GeV" ] && [ -s "$hits_ref_muons_1GeV" ]; then
+ echo "$script: Sim_tf output '$hits_muons_1GeV' not created. Run Reco_tf on '$hits_ref_muons_1GeV' instead." 2>&1
+ hits_muons_1GeV="$hits_ref_muons_1GeV"
+ fi
+
+ run ls -lL "$hits_muons_1GeV"
+
+ # Reco step: based on RecoInclinedDuals_GMX RTT job
+ # some preExecs for E2D step are workarounds - should be revisited.
+ run Reco_tf.py \
+ --inputHITSFile "$hits_muons_1GeV" \
+ --outputRDOFile physval_muons_1GeV.RDO.root \
+ --outputESDFile "$esd_muons_1GeV" \
+ --outputAODFile physval_muons_1GeV.AOD.root \
+ --outputDAOD_IDTRKVALIDFile "$daod_muons_1GeV" \
+ --maxEvents -1 \
+ --digiSteeringConf StandardInTimeOnlyTruth \
+ --geometryVersion ATLAS-P2-ITK-17-06-00 \
+ --conditionsTag OFLCOND-MC15c-SDR-14-04 \
+ --DataRunNumber 242000 \
+ --steering doRAWtoALL \
+ --postInclude all:'PyJobTransforms/UseFrontier.py,InDetSLHC_Example/postInclude.SLHC_Setup_InclBrl_4.py,InDetSLHC_Example/postInclude.SLHC_Setup.py' \
+ HITtoRDO:'InDetSLHC_Example/postInclude.SLHC_Digitization_lowthresh.py' \
+ RAWtoALL:'InDetSLHC_Example/postInclude.DigitalClustering.py' \
+ --preInclude all:'InDetSLHC_Example/preInclude.SLHC_Setup_InclBrl_4.py,InDetSLHC_Example/preInclude.SLHC_Setup_Strip_GMX.py,InDetSLHC_Example/preInclude.SLHC_Calorimeter_mu0.py' \
+ HITtoRDO:'InDetSLHC_Example/preInclude.SLHC.py,InDetSLHC_Example/preInclude.SiliconOnly.py' \
+ default:'InDetSLHC_Example/preInclude.SLHC.SiliconOnly.Reco.py,InDetSLHC_Example/SLHC_Setup_Reco_TrackingGeometry_GMX.py' \
+ RDOMergeAthenaMP:'InDetSLHC_Example/preInclude.SLHC.py,InDetSLHC_Example/preInclude.SiliconOnly.pyInDetSLHC_Example/SLHC_Setup_Reco_TrackingGeometry_GMX.py' \
+ POOLMergeAthenaMPAOD0:'InDetSLHC_Example/preInclude.SLHC.SiliconOnly.Ana.py,InDetSLHC_Example/SLHC_Setup_Reco_Alpine.py' \
+ POOLMergeAthenaMPDAODIDTRKVALID0:'InDetSLHC_Example/preInclude.SLHC.SiliconOnly.Ana.py,InDetSLHC_Example/SLHC_Setup_Reco_Alpine.py' \
+ --preExec all:'from AthenaCommon.GlobalFlags import globalflags; globalflags.DataSource.set_Value_and_Lock("geant4"); from InDetSLHC_Example.SLHC_JobProperties import SLHC_Flags; SLHC_Flags.doGMX.set_Value_and_Lock(True); SLHC_Flags.LayoutOption="InclinedAlternative";' \
+ HITtoRDO:'from Digitization.DigitizationFlags import digitizationFlags; digitizationFlags.doInDetNoise.set_Value_and_Lock(False); digitizationFlags.doBichselSimulation.set_Value_and_Lock(False); digitizationFlags.overrideMetadata+=["SimLayout","PhysicsList"];' \
+ RAWtoALL:'from InDetRecExample.InDetJobProperties import InDetFlags; InDetFlags.doStandardPlots.set_Value_and_Lock(True);from PixelConditionsServices.PixelConditionsServicesConf import PixelCalibSvc;ServiceMgr +=PixelCalibSvc();InDetFlags.useDCS.set_Value_and_Lock(True);ServiceMgr.PixelCalibSvc.DisableDB=True;from InDetPrepRawDataToxAOD.InDetDxAODJobProperties import InDetDxAODFlags;InDetDxAODFlags.DumpLArCollisionTime.set_Value_and_Lock(False);InDetDxAODFlags.DumpSctInfo.set_Value_and_Lock(True);InDetDxAODFlags.ThinHitsOnTrack.set_Value_and_Lock(False)' \
+ ESDtoDPD:'rec.DPDMakerScripts.set_Value_and_Lock(["PrimaryDPDMaker/PrimaryDPDMaker.py"]);from InDetRecExample.InDetJobProperties import InDetFlags;InDetFlags.useDCS.set_Value_and_Lock(True);from PixelConditionsServices.PixelConditionsServicesConf import PixelCalibSvc;ServiceMgr +=PixelCalibSvc();ServiceMgr.PixelCalibSvc.DisableDB=True' \
+ --postExec all:'ToolSvc.LayoutTranslationHelper.translateIdentifiersForInclinedAlternative=True;'\
+ HITtoRDO:'pixeldigi.EnableSpecialPixels=False; CfgMgr.MessageSvc().setError+=["HepMcParticleLink"];' \
+ RAWtoALL:'ToolSvc.InDetSCT_ClusteringTool.useRowInformation=True; from AthenaCommon.AppMgr import ToolSvc; ToolSvc.InDetTrackSummaryTool.OutputLevel=INFO;from InDetPhysValMonitoring.InDetPhysValMonitoringConf import InDetPhysValDecoratorAlg;decorators = InDetPhysValDecoratorAlg();topSequence += decorators'
+
+
+ reco_stat=$?
+ echo "art-result: $reco_stat reco"
+ if [ "$reco_stat" -ne 0 ]; then
+ echo "$script: Reco_tf.py isn't working yet. Remove jobReport.json to prevent pilot declaring a failed job."
+ run rm -f jobReport.json
+ fi
+
+ mv ./PixelRDOAnalysis.root ./$dcubemon_muons_1GeV_digi_pixel
+ mv ./SCT_RDOAnalysis.root ./$dcubemon_muons_1GeV_digi_strip
+
+ # DCube digi plots
+ dcube Reco_tf digi-plot "$dcubemon_muons_1GeV_digi_pixel" "$dcubecfg_digi_pixel" "$lastref_muons_1GeV_dir/$dcubemon_muons_1GeV_digi_pixel" "$dcube_digi_pixel_muons_1GeV_lastref"
+ dcube Reco_tf "" "$dcubemon_muons_1GeV_digi_pixel" "$dcubecfg_digi_pixel" "$dcuberef_muons_1GeV_digi_pixel" "$dcube_digi_pixel_muons_1GeV_fixref"
+
+ dcube Reco_tf digi-plot "$dcubemon_muons_1GeV_digi_strip" "$dcubecfg_digi_strip" "$lastref_muons_1GeV_dir/$dcubemon_muons_1GeV_digi_strip" "$dcube_digi_strip_muons_1GeV_lastref"
+ dcube Reco_tf "" "$dcubemon_muons_1GeV_digi_strip" "$dcubecfg_digi_strip" "$dcuberef_muons_1GeV_digi_strip" "$dcube_digi_strip_muons_1GeV_fixref"
+
+fi
+
+if [ $dophy -ne 0 ]; then
+
+ ## phys validation and dcube for single muons
+ run ls -lLU "$esd_muons_1GeV"
+
+ if [ ! -s "$esd_muons_1GeV" ]; then
+ echo "$script: Reco_tf output '$esd_muons_1GeV' not created - exit" 2>&1
+ echo "art-result: 21 physval"
+# test -n "$dcube_rec_fixref" && echo "art-result: 22 plot-fixref"
+ test -n "$dcube_rec_muons_1GeV_lastref" && echo "art-result: 22 plot"
+ exit
+ fi
+
+ # Run InDetPhysValMonitoring on DAOD.
+ # It should eventually be possible to include this in the reco step, but this needs Reco_tf to support the ITk IDPVM setup.
+ ( set -x
+ inputDAOD_IDTRKVALIDFile="$daod_muons_1GeV" exec athena.py InDetSLHC_Example/PhysValITk_jobOptions.py
+ )
+ echo "art-result: $? physval"
+
+ mv ./physval.root ./$dcubemon_muons_1GeV_rec
+
+ # DCube InDetPhysValMonitoring performance plots
+ dcube InDetPhysValMonitoring plot "$dcubemon_muons_1GeV_rec" "$dcubecfg_rec" "$lastref_muons_1GeV_dir/$dcubemon_muons_1GeV_rec" "$dcube_rec_muons_1GeV_lastref"
+ dcube InDetPhysValMonitoring "" "$dcubemon_muons_1GeV_rec" "$dcubecfg_rec" "$dcuberef_muons_1GeV_rec" "$dcube_rec_muons_1GeV_fixref"
+
+fi