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FPGATrackSim map maker: Output 2nd stage radii file by default

Jahred Adelman requested to merge jahreda/athena:FPGATrackSimRadiiUpdates into main

In our new configuration where the 2nd stage layers are just the unused ones after the first stage, we can output always the 2nd stage radii file. There is no reason not to. Tagging @brosser and @imaznas

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