diff --git a/examples/TmvaBdt.ipynb b/examples/TmvaBdt.ipynb new file mode 100644 index 0000000000000000000000000000000000000000..8e86991e66ab0804604917e25a8054d98d84c866 --- /dev/null +++ b/examples/TmvaBdt.ipynb @@ -0,0 +1,112 @@ +{ + "cells": [ + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "import pandas as pd\n", + "import seaborn as sns\n", + "\n", + "from nnfwtbn import Variable, Process, Cut, hist, McStack, DataStack, Stack, TmvaBdt\n", + "from nnfwtbn import toydata" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "df = toydata.get()" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "# Evaluation of TMVA BDT\n", + "The file `tmva_bdt.xml` contains a sample BDT trained on the toy dataset. The input variables are\n", + " - $\\eta^{j_1}$,\n", + " - $\\eta^{j_2}$,\n", + " - $\\tau\\;\\mathrm{centrality}$ and\n", + " - $\\ell\\;\\mathrm{centrality}$.\n", + " \n", + "The BDT was trained with regular TMVA in ROOT. The weights stored in the XML file can be read by `nnfwtbn.TmvaBdt` directly." + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "bdt = TmvaBdt(\"tmva_bdt.xml\")\n", + "df['bdt_prediction'] = bdt.predict(df)" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "# Plotting" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "p_ztt = Process(r\"$Z\\rightarrow\\tau\\tau$\", range=(0, 0))\n", + "p_sig = Process(r\"Signal\", range=(1, 1))" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "colors = [\"windows blue\", \"amber\", \"greyish\", \"faded green\", \"dusty purple\"]\n", + "colors = sns.xkcd_palette(colors)\n", + "s_ztt = McStack(p_ztt, color=colors[0], histtype='step')\n", + "s_sig = McStack(p_sig, color=colors[1], histtype='step')" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "v_bdt = Variable(\"BDT Score\", \"bdt_prediction\")\n", + "hist(df, v_bdt, 22, [s_ztt, s_sig], range=(-1.1, 1.1), \n", + " weight=\"weight\", numerator=None)\n", + "None" + ] + } + ], + "metadata": { + "kernelspec": { + "display_name": "Python 3", + "language": "python", + "name": "python3" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 3 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.7.5" + } + }, + "nbformat": 4, + "nbformat_minor": 2 +} diff --git a/examples/tmva_bdt.xml b/examples/tmva_bdt.xml new file mode 100644 index 0000000000000000000000000000000000000000..19f5ef322eb65758198b27c73dbde2c0ca2d4d3b --- /dev/null +++ b/examples/tmva_bdt.xml @@ -0,0 +1,897 @@ +<?xml version="1.0"?> +<MethodSetup Method="BDT::BDT"> + <GeneralInfo> + <Info name="TMVA Release" value="4.2.1 [262657]"/> + <Info name="ROOT Release" value="6.18/04 [397828]"/> + <Info name="Creator" value="Frank"/> + <Info name="Date" value="Fri Nov 22 13:24:52 2019"/> + <Info name="Host" value="Linux frank-uni 4.15.0-70-generic #79~16.04.1-Ubuntu SMP Tue Nov 12 14:01:10 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux"/> + <Info name="Dir" value="/home/frank/repositories/nnfwtbn"/> + <Info name="Training events" value="5000"/> + <Info name="TrainingTime" value="8.32540989e-02"/> + <Info name="AnalysisType" value="Classification"/> + </GeneralInfo> + <Options> + <Option name="V" modified="No">False</Option> + <Option name="VerbosityLevel" modified="No">Default</Option> + <Option name="VarTransform" modified="No">None</Option> + <Option name="H" modified="No">False</Option> + <Option name="CreateMVAPdfs" modified="No">False</Option> + <Option name="IgnoreNegWeightsInTraining" modified="No">False</Option> + <Option name="NTrees" modified="Yes">50</Option> + <Option name="MaxDepth" modified="No">3</Option> + <Option name="MinNodeSize" modified="No">5%</Option> + <Option name="nCuts" modified="No">20</Option> + <Option name="BoostType" modified="No">AdaBoost</Option> + <Option name="AdaBoostR2Loss" modified="No">quadratic</Option> + <Option name="UseBaggedBoost" modified="No">False</Option> + <Option name="Shrinkage" modified="No">1.000000e+00</Option> + <Option name="AdaBoostBeta" modified="No">5.000000e-01</Option> + <Option name="UseRandomisedTrees" modified="No">False</Option> + <Option name="UseNvars" modified="No">2</Option> + <Option name="UsePoissonNvars" modified="No">True</Option> + <Option name="BaggedSampleFraction" modified="No">6.000000e-01</Option> + <Option name="UseYesNoLeaf" modified="No">True</Option> + <Option name="NegWeightTreatment" modified="No">inverseboostnegweights</Option> + <Option name="Css" modified="No">1.000000e+00</Option> + <Option name="Cts_sb" modified="No">1.000000e+00</Option> + <Option name="Ctb_ss" 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