Scripts doing both analysis and scans
For the scripts doings both analysis and scans, which I believe is only testConnectivity.py and iterativeTrim.py, I think there are these general options:
- do not support them (either create instructions for a person to do the same things or drop support for the functionality)
- make the online analysis repository able to run the online software repository
- make the online software repository able to run the online analysis repository
- create a higher level repository able to run both the online analysis and the online software repository
For testConnectivity.py, I think we cannot just drop this functionality but it could be replaced by documentation.
For the trimming, I think we could drop this functionality and use non-iterative trimming, but I am not sure if that is a good idea given that we have used iterative trimming only in QC8.