updated readme and renamed excludeDUT in exclude_dut to be consistent with the other params

src/modules/AlignmentMillepede/AlignmentMillepede.cpp

@@ -15,7 +15,7 @@ using namespace std;
 AlignmentMillepede::AlignmentMillepede(Configuration config, std::vector<std::shared_ptr<Detector>> detectors)
     : Module(std::move(config), std::move(detectors)) {
 
-    m_excludeDUT = m_config.get<bool>("excludeDUT", false);
+    m_excludeDUT = m_config.get<bool>("exclude_dut", false);
     m_numberOfTracksForAlignment = m_config.get<size_t>("number_of_tracks", 20000);
     m_dofs = m_config.getArray<bool>("dofs", {});
     m_nIterations = m_config.get<size_t>("iterations", 5);
@@ -161,7 +161,6 @@ void AlignmentMillepede::finalise() {
         if(converg < m_convergence)
             break;
     }
-    // save the new geometry?
 }
 
 //=============================================================================

src/modules/AlignmentMillepede/README.md

@@ -11,6 +11,8 @@ The Millepede algorthm allows a simultaneous fit of both the tracks and the alig
 The modules stops if the convergence, i.e. the absolute sum of all corrections over the total number of parameters, is smaller than the configured value.
 
 ### Parameters
+* `exlude_dut` : Exclude the DUT from the alignment procedure. Default value
+is `false`.
 * `number_of_tracks`: Number of tracks used in the alignment method chosen. Default value is `20000`.
 * `iterations`: Number of times the chosen alignment method is to be iterated. Default value is `3`.
 * `dofs`: Degrees of freedom to be aligned. This parameter should be given as vector of six boolean values for the parameters "Translation X", "Translation Y", "Translation Z", "Rotation X", "Rotation Y" and "Rotation Z". The default setting is an alignment of all parameters except for "Translation Z", i.e. `dofs = true, true, false, true, true, true`.