added some example files for jobsub testing

jobsub/29674-example.conf

+[Corryvreckan]
+log_level = "WARNING"
+log_format = "DEFAULT"
+
+detectors_file = "/afs/cern.ch/user/j/jekroege/software/corryvreckan/jobsub/example.geo"
+histogramFile = "histograms.root"
+
+number_of_events = 1000000
+
+[Metronome]
+eventLength = 20us
+
+[EventLoaderTimepix3]
+inputDirectory = "/eos/experiment/clicdp/grid/ilc/user/c/clictel/CERN_TB_November_2018/data/29674"
+inputDirectory = "/eos/experiment/clicdp/grid/ilc/user/c/clictel/CERN_TB_November_2018/data/Run29674"
+
+[EventLoaderATLASpix]
+inputDirectory = "/eos/experiment/clicdp/grid/ilc/user/c/clictel/CERN_TB_November_2018/atlaspix/Run29674"
+log_level = "INFO"
+clockCycle = 8ns # 125 MHz
+clkdivend2 = 15
+
+[Clustering4D]
+
+[TestAlgorithm]
+log_level=INFO
+makeCorrelations=true
+timingCut=2ms
+
+[Tracking4D]
+minHitsOnTrack=6 # was 3
+spatialCut=200um # default 200um
+
+[DUTAssociation]
+timingCut = 500ns #default 200ns
+spatialCut = 300um, 150um
+
+[AnalysisDUT]
+
+[AnalysisEfficiency]
+log_level = "STATUS"
\ No newline at end of file

jobsub/example.conf

+[Corryvreckan]
+log_level = "WARNING"
+log_format = "DEFAULT"
+
+detectors_file = "/afs/cern.ch/user/j/jekroege/software/corryvreckan/jobsub/example.geo"
+histogramFile = "histograms.root"
+
+number_of_events = 1000000
+
+[Metronome]
+eventLength = 20us
+
+[EventLoaderTimepix3]
+inputDirectory = "/eos/experiment/clicdp/grid/ilc/user/c/clictel/CERN_TB_November_2018/data/@RunNumber@"
+inputDirectory = "/eos/experiment/clicdp/grid/ilc/user/c/clictel/CERN_TB_November_2018/data/Run29674"
+
+[EventLoaderATLASpix]
+inputDirectory = "/eos/experiment/clicdp/grid/ilc/user/c/clictel/CERN_TB_November_2018/atlaspix/Run29674"
+log_level = "INFO"
+clockCycle = 8ns # 125 MHz
+clkdivend2 = 15
+
+[Clustering4D]
+
+[TestAlgorithm]
+log_level=INFO
+makeCorrelations=true
+timingCut=2ms
+
+[Tracking4D]
+minHitsOnTrack=6 # was 3
+spatialCut=200um # default 200um
+
+[DUTAssociation]
+timingCut = 500ns #default 200ns
+spatialCut = 300um, 150um
+
+[AnalysisDUT]
+
+[AnalysisEfficiency]
+log_level = "STATUS"
\ No newline at end of file

jobsub/example.geo

+[W0013_D04]
+number_of_pixels = 256,256
+orientation = 9.94299deg,187.403deg,-1.36501deg
+orientation_mode = "xyz"
+pixel_pitch = 55um,55um
+position = 939.743um,285.05um,0
+resolution = 4um,4um
+type = "Timepix3"
+
+[W0013_E03]
+number_of_pixels = 256,256
+orientation = 10.3292deg,187.515deg,-1.08977deg
+orientation_mode = "xyz"
+pixel_pitch = 55um,55um
+position = -240.315um,405.685um,21.5mm
+resolution = 4um,4um
+type = "Timepix3"
+
+[W0013_G02]
+number_of_pixels = 256,256
+orientation = 9.72705deg,187.911deg,-1.65648deg
+orientation_mode = "xyz"
+pixel_pitch = 55um,55um
+position = 49.013um,386.567um,43.5mm
+resolution = 4um,4um
+type = "Timepix3"
+
+[ap1b02w23s15]
+number_of_pixels = 25,400
+orientation = -0.0124905deg,0.0684685deg,-0.52609deg
+orientation_mode = "xyz"
+pixel_pitch = 130um,40um
+position = 335.278um,-1.55396mm,105mm
+resolution = 40um,10um
+role = "dut"
+type = "ATLASpix"
+roi = [5,100], [5, 380], [20, 380], [20, 100]
+#mask_file = "test.mask"
+
+[W0013_G03]
+number_of_pixels = 256,256
+orientation = 8.99876deg,8.99412deg,-0.0178763deg
+orientation_mode = "xyz"
+pixel_pitch = 55um,55um
+position = -10.202um,-11.943um,186.5mm
+resolution = 4um,4um
+role = "reference"
+type = "Timepix3"
+
+[W0013_J05]
+number_of_pixels = 256,256
+orientation = 7.60819deg,9.72865deg,1.17027deg
+orientation_mode = "xyz"
+pixel_pitch = 55um,55um
+position = 455.423um,-578.822um,231.5mm
+resolution = 4um,4um
+type = "Timepix3"
+
+[W0013_L09]
+number_of_pixels = 256,256
+orientation = 6.66436deg,10.288deg,-0.387377deg
+orientation_mode = "xyz"
+pixel_pitch = 55um,55um
+position = -938.126um,28.775um,336.5mm
+resolution = 4um,4um
+type = "Timepix3"

jobsub/example.sub

+output                  = log/corryvreckan.$(ClusterId).$(ProcId).out
+error                   = log/corryvreckan.$(ClusterId).$(ProcId).err
+log                     = log/corryvreckan.$(ClusterId).log
+should_transfer_files   = Yes
+when_to_transfer_output = ON_EXIT
+transfer_output_files   = output/histograms.root
+#transfer_output_remaps  = "output/histograms.root = histograms_$(ClusterId).$(ProcId).root"
+getenv                  = True
+queue
\ No newline at end of file