removed unused parameter and updated readme

src/modules/EventLoaderMuPixTelescope/EventLoaderMuPixTelescope.cpp

@@ -29,7 +29,6 @@ EventLoaderMuPixTelescope::EventLoaderMuPixTelescope(Configuration& config, std:
     buffer_depth_ = config.get<unsigned>("buffer_depth");
     isSorted_ = config_.get<bool>("is_sorted");
     timeOffset_ = config_.get<double>("time_offset");
-    ts2IsGray_ = config_.get<bool>("ts2_is_gray");
     if(config_.has("input_file"))
         input_file_ = config_.get<string>("input_file");
 }

src/modules/EventLoaderMuPixTelescope/EventLoaderMuPixTelescope.h

@@ -72,7 +72,6 @@ namespace corryvreckan {
         PixelVector pixels_{};
         std::string inputDirectory_;
         bool isSorted_;
-        bool ts2IsGray_;
         int runNumber_;
         BlockFile* blockFile_;
         TelescopeFrame tf_;

src/modules/EventLoaderMuPixTelescope/README.md

@@ -19,7 +19,7 @@ The detector name in the geometry file is used to determine the tag:
 
 Everything behin the first `_` is used as tag, if none found the tag is assumed to be the detector name.
 The correct type is given by the `type` in the geometry.
-
+It is assumed that the timestamp has 10bit and runs at a frequency of 125 MHz (8ns bins)
 
 Eventdefinition for the `EventLoaderMuPixTelescope`:
 * Sorted telescope data: The loader can define its own events as the full
@@ -29,14 +29,15 @@ be a `Metronome` (8192ns are recommended
 to match the internal time structure) for standalone telescope data. Otherwise
 any other event definition (`EventLoaderEUDAQ2` `EventDefinitionM26`) can be used.
 
+### Dependencies
+This module requires a installation of the mupix8_daq package that is used by the Mu3e pixel group to read out the sensors. This library is non-public. Authorized users can download it via https://bitbucket.org/mu3e/mupix8_daq.git
+
 ### Parameters
 * `input_directory`: Defines the input file. No default
 * `Run`: 6 digit Run number, with leading zeros being automatically added, to open the data file with the standard format `telescope_run_RUN.blck`
 * `input_file`: Overwrite  the default file created based on the `Run`. No default.
 * `is_sorted`: Defines if data recorded is on FPGA timestamp sorted. Defaults to `false`
-* `ts2_is_gray`: Defines if the timestamp is gray encoded or not. Defaults to
-`false`, currently not supported.
-* `time_offset`: Set an offset to correct for the expected delay between
+* `time_offset`: Substract an offset to correct for the expected delay between
 issuing the synchronoues reset and receiving it. Only used if
 `is_sorted==false`. Defaults to `0`
 * `input_file`: Overwrite the input filename if the filename has a non-default
@@ -47,8 +48,11 @@ structure. Inactive if not given.
 For all detectors, the following plots are produced:
 
 * 2D histogram of pixel hit positions
+* 2D histogram of pixel read in but not added to an event
 * 1D histogram of the pixel timestamps
 * 1D histogram of the pixel ToT - currently not filled
+* 1D histogram of number of pixels per event
+* 1D histogram with the number of pixels aeveraged over 1k events as function of event number
 
 ### Usage
 ```toml