Make file paths read from the config relative to the config, not to the execution folder

src/modules/EventLoaderATLASpix/EventLoaderATLASpix.cpp

@@ -9,8 +9,8 @@ EventLoaderATLASpix::EventLoaderATLASpix(Configuration config, std::shared_ptr<D
 
     m_timewalkCorrectionFactors = m_config.getArray<double>("timewalkCorrectionFactors", std::vector<double>());
 
-    m_inputDirectory = m_config.get<std::string>("inputDirectory");
-    m_calibrationFile = m_config.get<std::string>("calibrationFile", std::string());
+    m_inputDirectory = m_config.getPath("inputDirectory");
+    m_calibrationFile = m_config.getPath("calibrationFile");
 
     m_clockCycle = m_config.get<double>("clockCycle", static_cast<double>(Units::convert(6.25, "ns")));
 

src/modules/EventLoaderCLICpix/EventLoaderCLICpix.cpp

@@ -13,7 +13,7 @@ void EventLoaderCLICpix::initialise() {
     // File structure is RunX/CLICpix/RunX.dat
 
     // Take input directory from global parameters
-    string inputDirectory = m_config.get<std::string>("inputDirectory") + "/CLICpix";
+    string inputDirectory = m_config.getPath("inputDirectory") + "/CLICpix";
 
     // Open the root directory
     DIR* directory = opendir(inputDirectory.c_str());

src/modules/EventLoaderCLICpix2/EventLoaderCLICpix2.cpp

@@ -17,7 +17,7 @@ EventLoaderCLICpix2::EventLoaderCLICpix2(Configuration config, std::shared_ptr<D
 void EventLoaderCLICpix2::initialise() {
 
     // Take input directory from global parameters
-    string inputDirectory = m_config.get<std::string>("inputDirectory");
+    string inputDirectory = m_config.getPath("inputDirectory");
 
     // Open the root directory
     DIR* directory = opendir(inputDirectory.c_str());

src/modules/EventLoaderTimepix1/EventLoaderTimepix1.cpp

@@ -34,7 +34,7 @@ bool EventLoaderTimepix1::sortByTime(string filename1, string filename2) {
 void EventLoaderTimepix1::initialise() {
 
     // Take input directory from global parameters
-    m_inputDirectory = m_config.get<std::string>("inputDirectory");
+    m_inputDirectory = m_config.getPath("inputDirectory");
 
     // Each input directory contains a series of .txt files. Each of these
     // contains several events (frames) with different times

src/modules/EventLoaderTimepix3/EventLoaderTimepix3.cpp

@@ -18,7 +18,7 @@ EventLoaderTimepix3::EventLoaderTimepix3(Configuration config, std::shared_ptr<D
       m_shutterOpen(false) {
 
     // Take input directory from global parameters
-    m_inputDirectory = m_config.get<std::string>("inputDirectory");
+    m_inputDirectory = m_config.getPath("inputDirectory");
     m_triggerLatency = m_config.get<double>("triggerLatency", 0.0);
     m_minNumberOfPlanes = m_config.get<int>("minNumerOfPlanes", 1);
 
@@ -26,7 +26,7 @@ EventLoaderTimepix3::EventLoaderTimepix3(Configuration config, std::shared_ptr<D
     m_numberPixelHits = m_config.get<size_t>("number_of_pixelhits", 2000);
 
     // Calibration parameters
-    calibrationPath = m_config.get<std::string>("calibrationPath", "");
+    calibrationPath = m_config.getPath("calibrationPath", "");
     threshold = m_config.get<std::string>("threshold", "");
 }
 

src/modules/FileReader/FileReader.cpp

@@ -9,7 +9,7 @@ FileReader::FileReader(Configuration config, std::vector<std::shared_ptr<Detecto
     m_readPixels = m_config.get<bool>("readPixels", true);
     m_readClusters = m_config.get<bool>("readClusters", false);
     m_readTracks = m_config.get<bool>("readTracks", false);
-    m_fileName = m_config.get<std::string>("fileName", "outputTuples.root");
+    m_fileName = m_config.getPath("fileName", "outputTuples.root");
     m_timeWindow = m_config.get<double>("timeWindow", static_cast<double>(Units::convert(1., "s")));
     m_readMCParticles = m_config.get<bool>("readMCParticles", false);
     // checking if DUT parameter is in the configuration file, if so then check if should only output the DUT