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Associates ProtoParticle objects selected by lines to MCParticle
objects.

If the line outputs refer to the reconstruction from the file (produced
by Brunel), the associations are created using the LinksByKey objects
from the file (produced by Brunel).

If the line outputs refer to the Moore reconstruction, the associations
are created from the ground up using the lower-level associators already
in Moore.

However the relations are made, they are made per ProtoParticle
container. In order to provide a fixed number of output tables, so that
downstream applications don't have to dynamically find relations, the
relations tables we make in Moore are merged into two tables: one for
charged protos, and one for neutral. (This splitting is arbitrary, we
could merge these two.)

Closes #197. (Mostly.)

Peilian Li authored Mar 19, 2020 and Alex Pearce committed Mar 19, 2020

Adds the `ntuple_file` option to PyConf to configure the ntuple-writing
service.

- The "standard" preprocessor for `validateWithRef` (`ref_preprocessor`)
  removes everything before finalization.
- All tests should use `countErrorLines` with the "standard"
  `remove_known_warnings` preprocessor to check for errors and warnings
  in the entire stdout

Rosen Matev authored Oct 02, 2019 and Alex Pearce committed Oct 02, 2019

Closes #5, #10, #13, #39, and #69.