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RunType Upgrade and change of TraskListMerger to TrackContainerCopy

Biljana Mitreska requested to merge upgrade-fix-2019 into master

Changed DefaultRecoSequences for the Upgrade, added RunType Upgrade in Escher Configuration. Changed TrackListMerger into TrackContainerCopy in TAlignment Configuration. Added a working version of the option file for testing the alignment (AllignVP.py).

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