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Avoid gaudirun.py customMainLoop for EvtCounter test

Marco Clemencic requested to merge marcocle/avoid-custommainloop-in-EvtCounter-test-master into master

Note that this fixes a test of a public tool that is updated during the BeginEvent incident... that code should be removed, but I do not have time to find and adapt where it's used before the Gaudi v32r0 release.

Required with gaudi/Gaudi!878 (merged)

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