Add ProtoParticle making to HLT2 reconstruction

The only missing piece (I think) from the HLT2 reconstruction is the creation of the ProtoParticle containers. This takes pretty much everything from the reconstruction and creates the objects that are used to create the Particle containers used in selections.

It used to be that the ProtoParticle making was highly non-functional, but @sstahl has done a lot of great work in getting it in a better shape. Now the configuration needs to be ported to Moore.