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Collecting codespell
  Downloading codespell-2.1.0-py3-none-any.whl (177 kB)
Installing collected packages: codespell
Successfully installed codespell-2.1.0
$ codespell --ignore-words .gitlab/ci/codespell_ignored_words.txt --quiet-level 2 --skip ".git,.gitlab,cmake,3rdparty,*.svg"
./src/modules/EventFilter/EventFilter.cpp:47: auxilliary ==> auxiliary
./src/modules/EventFilter/README.md:4: progess ==> progress
Cleaning up project directory and file based variables
ERROR: Job failed: exit code 1

-- Build files have been written to: /builds/lhuth/corryvreckan/build
$ ninja check-format
[1/1] Checking format compliance
FAILED: CMakeFiles/check-format 
cd /builds/lhuth/corryvreckan/build && /cvmfs/sft.cern.ch/lcg/releases/clang/12.0.0-8916b/x86_64-centos7/bin/clang-format -style=file -output-replacements-xml /builds/lhuth/corryvreckan/src/core/Corryvreckan.cpp /builds/lhuth/corryvreckan/src/core/Corryvreckan.hpp /builds/lhuth/corryvreckan/src/core/clipboard/Clipboard.cpp /builds/lhuth/corryvreckan/src/core/clipboard/Clipboard.hpp /builds/lhuth/corryvreckan/src/core/clipboard/Clipboard.tpp /builds/lhuth/corryvreckan/src/core/clipboard/exceptions.h /builds/lhuth/corryvreckan/src/core/config/ConfigManager.cpp /builds/lhuth/corryvreckan/src/core/config/ConfigManager.hpp /builds/lhuth/corryvreckan/src/core/config/ConfigReader.cpp /builds/lhuth/corryvreckan/src/core/config/ConfigReader.hpp /builds/lhuth/corryvreckan/src/core/config/Configuration.cpp /builds/lhuth/corryvreckan/src/core/config/Configuration.hpp /builds/lhuth/corryvreckan/src/core/config/Configuration.tpp /builds/lhuth/corryvreckan/src/core/config/OptionParser.cpp /builds/lhuth/corryvreckan/src/core/config/OptionParser.hpp /builds/lhuth/corryvreckan/src/core/config/exceptions.cpp /builds/lhuth/corryvreckan/src/core/config/exceptions.h /builds/lhuth/corryvreckan/src/core/detector/Detector.cpp /builds/lhuth/corryvreckan/src/core/detector/Detector.hpp /builds/lhuth/corryvreckan/src/core/detector/PixelDetector.cpp /builds/lhuth/corryvreckan/src/core/detector/PixelDetector.hpp /builds/lhuth/corryvreckan/src/core/detector/exceptions.cpp /builds/lhuth/corryvreckan/src/core/detector/exceptions.h /builds/lhuth/corryvreckan/src/core/module/Module.cpp /builds/lhuth/corryvreckan/src/core/module/Module.hpp /builds/lhuth/corryvreckan/src/core/module/ModuleIdentifier.hpp /builds/lhuth/corryvreckan/src/core/module/ModuleManager.cpp /builds/lhuth/corryvreckan/src/core/module/ModuleManager.hpp /builds/lhuth/corryvreckan/src/core/module/dynamic_module_impl.cpp /builds/lhuth/corryvreckan/src/core/module/exceptions.h /builds/lhuth/corryvreckan/src/core/utils/ROOT.h /builds/lhuth/corryvreckan/src/core/utils/ThreadPool.cpp /builds/lhuth/corryvreckan/src/core/utils/ThreadPool.hpp /builds/lhuth/corryvreckan/src/core/utils/ThreadPool.tpp /builds/lhuth/corryvreckan/src/core/utils/exceptions.h /builds/lhuth/corryvreckan/src/core/utils/log.cpp /builds/lhuth/corryvreckan/src/core/utils/log.h /builds/lhuth/corryvreckan/src/core/utils/text.cpp /builds/lhuth/corryvreckan/src/core/utils/text.h /builds/lhuth/corryvreckan/src/core/utils/text.tpp /builds/lhuth/corryvreckan/src/core/utils/type.h /builds/lhuth/corryvreckan/src/core/utils/unit.cpp /builds/lhuth/corryvreckan/src/core/utils/unit.h /builds/lhuth/corryvreckan/src/core/utils/unit.tpp /builds/lhuth/corryvreckan/src/exec/corry.cpp /builds/lhuth/corryvreckan/src/modules/AlignmentDUTResidual/AlignmentDUTResidual.cpp /builds/lhuth/corryvreckan/src/modules/AlignmentDUTResidual/AlignmentDUTResidual.h /builds/lhuth/corryvreckan/src/modules/AlignmentMillepede/AlignmentMillepede.cpp /builds/lhuth/corryvreckan/src/modules/AlignmentMillepede/AlignmentMillepede.h /builds/lhuth/corryvreckan/src/modules/AlignmentTrackChi2/AlignmentTrackChi2.cpp /builds/lhuth/corryvreckan/src/modules/AlignmentTrackChi2/AlignmentTrackChi2.h /builds/lhuth/corryvreckan/src/modules/AnalysisDUT/AnalysisDUT.cpp /builds/lhuth/corryvreckan/src/modules/AnalysisDUT/AnalysisDUT.h /builds/lhuth/corryvreckan/src/modules/AnalysisEfficiency/AnalysisEfficiency.cpp /builds/lhuth/corryvreckan/src/modules/AnalysisEfficiency/AnalysisEfficiency.h /builds/lhuth/corryvreckan/src/modules/AnalysisMaterialBudget/AnalysisMaterialBudget.cpp /builds/lhuth/corryvreckan/src/modules/AnalysisMaterialBudget/AnalysisMaterialBudget.h /builds/lhuth/corryvreckan/src/modules/AnalysisParticleFlux/AnalysisParticleFlux.cpp /builds/lhuth/corryvreckan/src/modules/AnalysisParticleFlux/AnalysisParticleFlux.h /builds/lhuth/corryvreckan/src/modules/AnalysisPowerPulsing/AnalysisPowerPulsing.cpp /builds/lhuth/corryvreckan/src/modules/AnalysisPowerPulsing/AnalysisPowerPulsing.h /builds/lhuth/corryvreckan/src/modules/AnalysisSensorEdge/AnalysisSensorEdge.cpp /builds/lhuth/corryvreckan/src/modules/AnalysisSensorEdge/AnalysisSensorEdge.h /builds/lhuth/corryvreckan/src/modules/AnalysisTelescope/AnalysisTelescope.cpp /builds/lhuth/corryvreckan/src/modules/AnalysisTelescope/AnalysisTelescope.h /builds/lhuth/corryvreckan/src/modules/AnalysisTimingATLASpix/AnalysisTimingATLASpix.cpp /builds/lhuth/corryvreckan/src/modules/AnalysisTimingATLASpix/AnalysisTimingATLASpix.h /builds/lhuth/corryvreckan/src/modules/AnalysisTracks/AnalysisTracks.cpp /builds/lhuth/corryvreckan/src/modules/AnalysisTracks/AnalysisTracks.h /builds/lhuth/corryvreckan/src/modules/Clustering4D/Clustering4D.cpp /builds/lhuth/corryvreckan/src/modules/Clustering4D/Clustering4D.h /builds/lhuth/corryvreckan/src/modules/ClusteringSpatial/ClusteringSpatial.cpp /builds/lhuth/corryvreckan/src/modules/ClusteringSpatial/ClusteringSpatial.h /builds/lhuth/corryvreckan/src/modules/Correlations/Correlations.cpp /builds/lhuth/corryvreckan/src/modules/Correlations/Correlations.h /builds/lhuth/corryvreckan/src/modules/DUTAssociation/DUTAssociation.cpp /builds/lhuth/corryvreckan/src/modules/DUTAssociation/DUTAssociation.h /builds/lhuth/corryvreckan/src/modules/Dummy/Dummy.cpp /builds/lhuth/corryvreckan/src/modules/Dummy/Dummy.h /builds/lhuth/corryvreckan/src/modules/EtaCalculation/EtaCalculation.cpp /builds/lhuth/corryvreckan/src/modules/EtaCalculation/EtaCalculation.h /builds/lhuth/corryvreckan/src/modules/EtaCorrection/EtaCorrection.cpp /builds/lhuth/corryvreckan/src/modules/EtaCorrection/EtaCorrection.h /builds/lhuth/corryvreckan/src/modules/EventDefinitionM26/EventDefinitionM26.cpp /builds/lhuth/corryvreckan/src/modules/EventDefinitionM26/EventDefinitionM26.h /builds/lhuth/corryvreckan/src/modules/EventFilter/EventFilter.cpp /builds/lhuth/corryvreckan/src/modules/EventFilter/EventFilter.h /builds/lhuth/corryvreckan/src/modules/EventLoaderATLASpix/EventLoaderATLASpix.cpp /builds/lhuth/corryvreckan/src/modules/EventLoaderATLASpix/EventLoaderATLASpix.h /builds/lhuth/corryvreckan/src/modules/EventLoaderCLICpix/EventLoaderCLICpix.cpp /builds/lhuth/corryvreckan/src/modules/EventLoaderCLICpix/EventLoaderCLICpix.h /builds/lhuth/corryvreckan/src/modules/EventLoaderCLICpix2/CLICpix2/clicpix2_frameDecoder.cpp /builds/lhuth/corryvreckan/src/modules/EventLoaderCLICpix2/CLICpix2/clicpix2_frameDecoder.hpp /builds/lhuth/corryvreckan/src/modules/EventLoaderCLICpix2/CLICpix2/clicpix2_frameDecoder_lfsr13.cpp /builds/lhuth/corryvreckan/src/modules/EventLoaderCLICpix2/CLICpix2/clicpix2_frameDecoder_lfsr5.cpp /builds/lhuth/corryvreckan/src/modules/EventLoaderCLICpix2/CLICpix2/clicpix2_frameDecoder_lfsr8.cpp /builds/lhuth/corryvreckan/src/modules/EventLoaderCLICpix2/CLICpix2/clicpix2_pixels.hpp /builds/lhuth/corryvreckan/src/modules/EventLoaderCLICpix2/CLICpix2/clicpix2_utilities.cpp /builds/lhuth/corryvreckan/src/modules/EventLoaderCLICpix2/CLICpix2/clicpix2_utilities.hpp /builds/lhuth/corryvreckan/src/modules/EventLoaderCLICpix2/CLICpix2/datatypes.hpp /builds/lhuth/corryvreckan/src/modules/EventLoaderCLICpix2/EventLoaderCLICpix2.cpp /builds/lhuth/corryvreckan/src/modules/EventLoaderCLICpix2/EventLoaderCLICpix2.h /builds/lhuth/corryvreckan/src/modules/EventLoaderEUDAQ/EventLoaderEUDAQ.cpp /builds/lhuth/corryvreckan/src/modules/EventLoaderEUDAQ/EventLoaderEUDAQ.h /builds/lhuth/corryvreckan/src/modules/EventLoaderEUDAQ/SequentialReader.cpp /builds/lhuth/corryvreckan/src/modules/EventLoaderEUDAQ/SequentialReader.h /builds/lhuth/corryvreckan/src/modules/EventLoaderEUDAQ2/EventLoaderEUDAQ2.cpp /builds/lhuth/corryvreckan/src/modules/EventLoaderEUDAQ2/EventLoaderEUDAQ2.h /builds/lhuth/corryvreckan/src/modules/EventLoaderMuPixTelescope/EventLoaderMuPixTelescope.cpp /builds/lhuth/corryvreckan/src/modules/EventLoaderMuPixTelescope/EventLoaderMuPixTelescope.h /builds/lhuth/corryvreckan/src/modules/EventLoaderTimepix1/EventLoaderTimepix1.cpp /builds/lhuth/corryvreckan/src/modules/EventLoaderTimepix1/EventLoaderTimepix1.h /builds/lhuth/corryvreckan/src/modules/EventLoaderTimepix3/EventLoaderTimepix3.cpp /builds/lhuth/corryvreckan/src/modules/EventLoaderTimepix3/EventLoaderTimepix3.h /builds/lhuth/corryvreckan/src/modules/FileReader/FileReader.cpp /builds/lhuth/corryvreckan/src/modules/FileReader/FileReader.h /builds/lhuth/corryvreckan/src/modules/FileWriter/FileWriter.cpp /builds/lhuth/corryvreckan/src/modules/FileWriter/FileWriter.h /builds/lhuth/corryvreckan/src/modules/FilterEvents/FilterEvents.cpp /builds/lhuth/corryvreckan/src/modules/FilterEvents/FilterEvents.h /builds/lhuth/corryvreckan/src/modules/ImproveReferenceTimestamp/ImproveReferenceTimestamp.cpp /builds/lhuth/corryvreckan/src/modules/ImproveReferenceTimestamp/ImproveReferenceTimestamp.h /builds/lhuth/corryvreckan/src/modules/JSONWriter/JSONWriter.cpp /builds/lhuth/corryvreckan/src/modules/JSONWriter/JSONWriter.h /builds/lhuth/corryvreckan/src/modules/MaskCreator/MaskCreator.cpp /builds/lhuth/corryvreckan/src/modules/MaskCreator/MaskCreator.h /builds/lhuth/corryvreckan/src/modules/MaskCreatorTimepix3/MaskCreatorTimepix3.cpp /builds/lhuth/corryvreckan/src/modules/MaskCreatorTimepix3/MaskCreatorTimepix3.h /builds/lhuth/corryvreckan/src/modules/Metronome/Metronome.cpp /builds/lhuth/corryvreckan/src/modules/Metronome/Metronome.h /builds/lhuth/corryvreckan/src/modules/OnlineMonitor/GuiDisplay.hpp /builds/lhuth/corryvreckan/src/modules/OnlineMonitor/Linkdef.h /builds/lhuth/corryvreckan/src/modules/OnlineMonitor/OnlineMonitor.cpp /builds/lhuth/corryvreckan/src/modules/OnlineMonitor/OnlineMonitor.h /builds/lhuth/corryvreckan/src/modules/Prealignment/Prealignment.cpp /builds/lhuth/corryvreckan/src/modules/Prealignment/Prealignment.h /builds/lhuth/corryvreckan/src/modules/TextWriter/TextWriter.cpp /builds/lhuth/corryvreckan/src/modules/TextWriter/TextWriter.h /builds/lhuth/corryvreckan/src/modules/Tracking4D/Tracking4D.cpp /builds/lhuth/corryvreckan/src/modules/Tracking4D/Tracking4D.h /builds/lhuth/corryvreckan/src/modules/TrackingMultiplet/TrackingMultiplet.cpp /builds/lhuth/corryvreckan/src/modules/TrackingMultiplet/TrackingMultiplet.h /builds/lhuth/corryvreckan/src/modules/TrackingSpatial/TrackingSpatial.cpp /builds/lhuth/corryvreckan/src/modules/TrackingSpatial/TrackingSpatial.h /builds/lhuth/corryvreckan/src/modules/TreeWriterDUT/TreeWriterDUT.cpp /builds/lhuth/corryvreckan/src/modules/TreeWriterDUT/TreeWriterDUT.h /builds/lhuth/corryvreckan/src/objects/Cluster.cpp /builds/lhuth/corryvreckan/src/objects/Cluster.hpp /builds/lhuth/corryvreckan/src/objects/Event.cpp /builds/lhuth/corryvreckan/src/objects/Event.hpp /builds/lhuth/corryvreckan/src/objects/GblTrack.cpp /builds/lhuth/corryvreckan/src/objects/GblTrack.hpp /builds/lhuth/corryvreckan/src/objects/Linkdef.h /builds/lhuth/corryvreckan/src/objects/MCParticle.hpp /builds/lhuth/corryvreckan/src/objects/Multiplet.cpp /builds/lhuth/corryvreckan/src/objects/Multiplet.hpp /builds/lhuth/corryvreckan/src/objects/Object.cpp /builds/lhuth/corryvreckan/src/objects/Object.hpp /builds/lhuth/corryvreckan/src/objects/Pixel.cpp /builds/lhuth/corryvreckan/src/objects/Pixel.hpp /builds/lhuth/corryvreckan/src/objects/SpidrSignal.hpp /builds/lhuth/corryvreckan/src/objects/StraightLineTrack.cpp /builds/lhuth/corryvreckan/src/objects/StraightLineTrack.hpp /builds/lhuth/corryvreckan/src/objects/Track.cpp /builds/lhuth/corryvreckan/src/objects/Track.hpp /builds/lhuth/corryvreckan/src/objects/exceptions.h /builds/lhuth/corryvreckan/src/objects/objects.h /builds/lhuth/corryvreckan/src/tools/cuts.h /builds/lhuth/corryvreckan/src/tools/kdtree.h | tee /builds/lhuth/corryvreckan/build/check_format_file.txt | grep -c replacement\  | tr -d [:cntrl:] && echo \ replacements\ necessary && ! grep -c replacement\  /builds/lhuth/corryvreckan/build/check_format_file.txt > /dev/null
3 replacements necessary
ninja: build stopped: subcommand failed.
Cleaning up project directory and file based variables
ERROR: Job failed: exit code 1

Generating docs for compound corryvreckan::EventLoaderCLICpix2...
Generating docs for compound corryvreckan::EventLoaderEUDAQ...
Generating docs for compound corryvreckan::EventLoaderEUDAQ2...
Generating docs for nested compound corryvreckan::EventLoaderEUDAQ2::CompareTimeGreater...
Generating docs for nested compound corryvreckan::EventLoaderEUDAQ2::EndOfFile...
Generating docs for compound corryvreckan::EventLoaderMuPixTelescope...
Exiting...
Cleaning up project directory and file based variables
ERROR: Job failed: exit code 1

[119/166] Building CXX object src/modules/TrackingSpatial/CMakeFiles/CorryvreckanModuleTrackingSpatial.dir/__/__/core/module/dynamic_module_impl.cpp.o
[120/166] Building CXX object src/modules/TreeWriterDUT/CMakeFiles/CorryvreckanModuleTreeWriterDUT.dir/TreeWriterDUT.cpp.o
[121/166] Building CXX object src/exec/CMakeFiles/corry.dir/corry.cpp.o
[122/166] Building CXX object src/modules/TrackingSpatial/CMakeFiles/CorryvreckanModuleTrackingSpatial.dir/TrackingSpatial.cpp.o
[123/166] Building CXX object src/modules/OnlineMonitor/CMakeFiles/CorryvreckanModuleOnlineMonitor.dir/OnlineMonitor.cpp.o
[124/166] Building CXX object src/modules/Tracking4D/CMakeFiles/CorryvreckanModuleTracking4D.dir/Tracking4D.cpp.o
ninja: build stopped: cannot make progress due to previous errors.
Cleaning up project directory and file based variables
ERROR: Job failed: exit code 1