diff --git a/AtlasTest/DatabaseTest/TagCollectionTest/CMakeLists.txt b/AtlasTest/DatabaseTest/TagCollectionTest/CMakeLists.txt
index 8eae14a596c53da56d8f0bc39bd9336701eacd1d..28efba0c251610fb28f8770dd8440a406eacdbe8 100644
--- a/AtlasTest/DatabaseTest/TagCollectionTest/CMakeLists.txt
+++ b/AtlasTest/DatabaseTest/TagCollectionTest/CMakeLists.txt
@@ -9,7 +9,7 @@ atlas_subdir( TagCollectionTest )
atlas_depends_on_subdirs( PUBLIC
Control/MinimalRunTime
TestPolicy
- Tools/AtlasDoxygen )
+ )
# Install files from the package:
atlas_install_headers( TagCollectionTest )
diff --git a/ForwardDetectors/AFP/AFP_G4_SD/CMakeLists.txt b/ForwardDetectors/AFP/AFP_G4_SD/CMakeLists.txt
index 0ce35b2d7d696fd144f9ce04ed57ffd9d91e9a92..d8ff8b64f28433d3aeada056cbdd6a5aef135967 100644
--- a/ForwardDetectors/AFP/AFP_G4_SD/CMakeLists.txt
+++ b/ForwardDetectors/AFP/AFP_G4_SD/CMakeLists.txt
@@ -14,7 +14,7 @@ atlas_depends_on_subdirs( PUBLIC
ForwardDetectors/AFP/AFP_Geometry
ForwardDetectors/AFP/AFP_SimEv
Simulation/G4Atlas/G4AtlasTools
- Tools/AtlasDoxygen )
+ )
# External dependencies:
find_package( CLHEP )
diff --git a/ForwardDetectors/ALFA/ALFA_G4_SD/CMakeLists.txt b/ForwardDetectors/ALFA/ALFA_G4_SD/CMakeLists.txt
index 306917927a069acfc95e5b4325d80aa54ce09725..fd3da2648d9503c68289961ecfdfbada31103b66 100644
--- a/ForwardDetectors/ALFA/ALFA_G4_SD/CMakeLists.txt
+++ b/ForwardDetectors/ALFA/ALFA_G4_SD/CMakeLists.txt
@@ -13,7 +13,7 @@ atlas_depends_on_subdirs( PUBLIC
Control/StoreGate
ForwardDetectors/ALFA/ALFA_SimEv
Simulation/G4Atlas/G4AtlasTools
- Tools/AtlasDoxygen )
+ )
# External dependencies:
find_package( CLHEP )
diff --git a/ForwardDetectors/LUCID/LUCID_G4_SD/CMakeLists.txt b/ForwardDetectors/LUCID/LUCID_G4_SD/CMakeLists.txt
index 3a7cbff8cbd77db5578449f211f15a1bb5bb3034..7dc7f6cfe66b24c062bb8df8aa45f74f00055667 100644
--- a/ForwardDetectors/LUCID/LUCID_G4_SD/CMakeLists.txt
+++ b/ForwardDetectors/LUCID/LUCID_G4_SD/CMakeLists.txt
@@ -15,7 +15,7 @@ atlas_depends_on_subdirs( PUBLIC
ForwardDetectors/LUCID/LUCID_SimUtils/LUCID_SimEvent
Simulation/G4Atlas/G4AtlasTools
Simulation/HitManagement
- Tools/AtlasDoxygen )
+ )
# External dependencies:
find_package( CLHEP )
diff --git a/ForwardDetectors/ZDC/ZDC_SD/CMakeLists.txt b/ForwardDetectors/ZDC/ZDC_SD/CMakeLists.txt
index a0197e6292f4521ec9362c2a25f0bf183d126d51..2180740d40f51ca13b9ec22ec942f435193337a1 100644
--- a/ForwardDetectors/ZDC/ZDC_SD/CMakeLists.txt
+++ b/ForwardDetectors/ZDC/ZDC_SD/CMakeLists.txt
@@ -13,7 +13,7 @@ atlas_depends_on_subdirs( PUBLIC
Control/StoreGate
ForwardDetectors/ZDC/ZDC_SimEvent
Simulation/G4Atlas/G4AtlasTools
- Tools/AtlasDoxygen )
+ )
# External dependencies:
find_package( CLHEP )
diff --git a/Generators/GenAnalysisTools/EventBoost/CMakeLists.txt b/Generators/GenAnalysisTools/EventBoost/CMakeLists.txt
index 3f66bace665e3c46af2dd6a85fb5d1b20e8890f7..6bd4fd2ac72aae5f60c810619159580b3535d7cd 100644
--- a/Generators/GenAnalysisTools/EventBoost/CMakeLists.txt
+++ b/Generators/GenAnalysisTools/EventBoost/CMakeLists.txt
@@ -12,7 +12,7 @@ atlas_depends_on_subdirs( PUBLIC
PRIVATE
Control/StoreGate
Generators/GeneratorObjects
- Tools/AtlasDoxygen )
+ )
# External dependencies:
find_package( CLHEP )
diff --git a/InnerDetector/InDetG4/BCM_G4_SD/CMakeLists.txt b/InnerDetector/InDetG4/BCM_G4_SD/CMakeLists.txt
index 3603f2abae0c6b7b9f029598c0d9f012316037b7..1d0f1309c14308c5db37522189351a40a32ade6d 100644
--- a/InnerDetector/InDetG4/BCM_G4_SD/CMakeLists.txt
+++ b/InnerDetector/InDetG4/BCM_G4_SD/CMakeLists.txt
@@ -15,7 +15,7 @@ atlas_depends_on_subdirs( PRIVATE
InnerDetector/InDetSimEvent
Simulation/G4Atlas/G4AtlasTools
Simulation/G4Sim/MCTruth
- Tools/AtlasDoxygen )
+ )
# External dependencies:
find_package( CLHEP )
diff --git a/InnerDetector/InDetG4/BLM_G4_SD/CMakeLists.txt b/InnerDetector/InDetG4/BLM_G4_SD/CMakeLists.txt
index 77ce13e42a298fe6945e03b462aecf0225fe3d3a..8df58d25e75339554fe67355134b64d94523e4d1 100644
--- a/InnerDetector/InDetG4/BLM_G4_SD/CMakeLists.txt
+++ b/InnerDetector/InDetG4/BLM_G4_SD/CMakeLists.txt
@@ -13,7 +13,7 @@ atlas_depends_on_subdirs( PRIVATE
InnerDetector/InDetSimEvent
Simulation/G4Atlas/G4AtlasTools
Simulation/G4Sim/MCTruth
- Tools/AtlasDoxygen )
+ )
# External dependencies:
find_package( CLHEP )
diff --git a/InnerDetector/InDetG4/PixelG4_SD/CMakeLists.txt b/InnerDetector/InDetG4/PixelG4_SD/CMakeLists.txt
index 8b6adca191f41b296d18ab572f9f2c2031762906..81dacbc1ab811c66d5e18362667a7a451e29a406 100644
--- a/InnerDetector/InDetG4/PixelG4_SD/CMakeLists.txt
+++ b/InnerDetector/InDetG4/PixelG4_SD/CMakeLists.txt
@@ -13,7 +13,7 @@ atlas_depends_on_subdirs( PRIVATE
InnerDetector/InDetSimEvent
Simulation/G4Atlas/G4AtlasTools
Simulation/G4Sim/MCTruth
- Tools/AtlasDoxygen )
+ )
# External dependencies:
find_package( CLHEP )
diff --git a/InnerDetector/InDetG4/SCT_G4_SD/CMakeLists.txt b/InnerDetector/InDetG4/SCT_G4_SD/CMakeLists.txt
index 023d45fe661dde5b785f85678b7ba1be7acbb7d7..f4eaccd3ea95aff625f84a168eecd1ca417f8adc 100644
--- a/InnerDetector/InDetG4/SCT_G4_SD/CMakeLists.txt
+++ b/InnerDetector/InDetG4/SCT_G4_SD/CMakeLists.txt
@@ -13,7 +13,7 @@ atlas_depends_on_subdirs( PRIVATE
InnerDetector/InDetSimEvent
Simulation/G4Atlas/G4AtlasTools
Simulation/G4Sim/MCTruth
- Tools/AtlasDoxygen )
+ )
# External dependencies:
find_package( CLHEP )
diff --git a/InnerDetector/InDetG4/TRT_G4_SD/CMakeLists.txt b/InnerDetector/InDetG4/TRT_G4_SD/CMakeLists.txt
index 61f0479b1816e412725c424c84e2ee8b00e6f7fd..b8bf5e7e4ac1de1446a29318b92ebcf595484067 100644
--- a/InnerDetector/InDetG4/TRT_G4_SD/CMakeLists.txt
+++ b/InnerDetector/InDetG4/TRT_G4_SD/CMakeLists.txt
@@ -15,7 +15,7 @@ atlas_depends_on_subdirs( PRIVATE
InnerDetector/InDetSimEvent
Simulation/G4Atlas/G4AtlasTools
Simulation/G4Sim/MCTruth
- Tools/AtlasDoxygen )
+ )
# External dependencies:
find_package( CLHEP )
diff --git a/InnerDetector/InDetSimEvent/CMakeLists.txt b/InnerDetector/InDetSimEvent/CMakeLists.txt
index 01df185789c897fb733952b40e7a54e475811193..3846808c6843a1ce70a99c81bb9f93767b49a0a9 100644
--- a/InnerDetector/InDetSimEvent/CMakeLists.txt
+++ b/InnerDetector/InDetSimEvent/CMakeLists.txt
@@ -12,7 +12,7 @@ atlas_depends_on_subdirs( PUBLIC
Control/SGTools
Generators/GeneratorObjects
Simulation/HitManagement
- Tools/AtlasDoxygen
+
PRIVATE
Control/StoreGate
InnerDetector/InDetDetDescr/InDetIdentifier )
diff --git a/PhysicsAnalysis/PhysicsElementLinks/CMakeLists.txt b/PhysicsAnalysis/PhysicsElementLinks/CMakeLists.txt
index fd93b1c61a1f41dd0f0afc5ea4914e12936be79e..0fa3407896fec43d582feb07ca7618e6d49364db 100644
--- a/PhysicsAnalysis/PhysicsElementLinks/CMakeLists.txt
+++ b/PhysicsAnalysis/PhysicsElementLinks/CMakeLists.txt
@@ -15,7 +15,7 @@ atlas_depends_on_subdirs( PUBLIC
Reconstruction/Particle
Reconstruction/egamma/egammaEvent
Reconstruction/tauEvent
- Tools/AtlasDoxygen )
+ )
# External dependencies:
find_package( ROOT COMPONENTS Core Tree MathCore Hist RIO pthread )
diff --git a/Projects/AthSimulation/package_filters.txt b/Projects/AthSimulation/package_filters.txt
index e393d34a6bd16b067fa261904ae696474a415eef..14a7fb57296d373bb687fd125e2a99b4eb5f134b 100644
--- a/Projects/AthSimulation/package_filters.txt
+++ b/Projects/AthSimulation/package_filters.txt
@@ -324,7 +324,6 @@
+ TileCalorimeter/TileSvc/TileSimEventAthenaPool
+ TileCalorimeter/TileSvc/TileSimEventTPCnv
+ Tools/ART
-+ Tools/AtlasDoxygen
+ Tools/CodeCheck
+ Tools/JobTransforms
+ Tools/KitValidation
diff --git a/TileCalorimeter/TileFastCaloSim/CMakeLists.txt b/TileCalorimeter/TileFastCaloSim/CMakeLists.txt
index 28f7046ab98dc538ba5811b519bcb3351cb53490..192014157f1895058f1ef5ddddf4806d398620a9 100644
--- a/TileCalorimeter/TileFastCaloSim/CMakeLists.txt
+++ b/TileCalorimeter/TileFastCaloSim/CMakeLists.txt
@@ -7,7 +7,7 @@ atlas_subdir( TileFastCaloSim )
# Declare the package's dependencies:
atlas_depends_on_subdirs( PUBLIC
- Tools/AtlasDoxygen
+
PRIVATE
Calorimeter/CaloEvent
Calorimeter/CaloIdentifier
diff --git a/TileCalorimeter/TileG4/TileAncillary/CombinedScintillator/CMakeLists.txt b/TileCalorimeter/TileG4/TileAncillary/CombinedScintillator/CMakeLists.txt
index 58f5395cbcd0e597e3b43646a10d4549d377005d..fd2184fe8f479f7f2c997f6b0ef42094f056c68f 100644
--- a/TileCalorimeter/TileG4/TileAncillary/CombinedScintillator/CMakeLists.txt
+++ b/TileCalorimeter/TileG4/TileAncillary/CombinedScintillator/CMakeLists.txt
@@ -7,7 +7,7 @@ atlas_subdir( CombinedScintillator )
# Declare the package's dependencies:
atlas_depends_on_subdirs( PUBLIC
- Tools/AtlasDoxygen
+
PRIVATE
Calorimeter/CaloIdentifier
Control/CxxUtils
diff --git a/TileCalorimeter/TileG4/TileAncillary/DeadMaterial/CMakeLists.txt b/TileCalorimeter/TileG4/TileAncillary/DeadMaterial/CMakeLists.txt
index 74c584441a95647797fb545516985d2f37d06ab0..c5268484ada7f7b397f7479b6e359931292e6b84 100644
--- a/TileCalorimeter/TileG4/TileAncillary/DeadMaterial/CMakeLists.txt
+++ b/TileCalorimeter/TileG4/TileAncillary/DeadMaterial/CMakeLists.txt
@@ -7,7 +7,7 @@ atlas_subdir( DeadMaterial )
# Declare the package's dependencies:
atlas_depends_on_subdirs( PUBLIC
- Tools/AtlasDoxygen
+
PRIVATE
Control/StoreGate
DetectorDescription/GeoModel/GeoModelInterfaces
diff --git a/TileCalorimeter/TileG4/TileAncillary/LarCrate/CMakeLists.txt b/TileCalorimeter/TileG4/TileAncillary/LarCrate/CMakeLists.txt
index eebd0081fea0620dc87b281a7ded16d97b5a7e13..12c900232ddf9aecf72d56cef0383aaa9784ac66 100644
--- a/TileCalorimeter/TileG4/TileAncillary/LarCrate/CMakeLists.txt
+++ b/TileCalorimeter/TileG4/TileAncillary/LarCrate/CMakeLists.txt
@@ -7,7 +7,7 @@ atlas_subdir( LarCrate )
# Declare the package's dependencies:
atlas_depends_on_subdirs( PUBLIC
- Tools/AtlasDoxygen
+
PRIVATE
Control/StoreGate
DetectorDescription/GeoModel/GeoModelInterfaces
diff --git a/TileCalorimeter/TileG4/TileAncillary/MinBiasScintillator/CMakeLists.txt b/TileCalorimeter/TileG4/TileAncillary/MinBiasScintillator/CMakeLists.txt
index 96723fb83f7d48ddd3f8858449f503880eaa6af5..5c7d9edf78b09a288621d7c9a12e8fa63b2ceee5 100644
--- a/TileCalorimeter/TileG4/TileAncillary/MinBiasScintillator/CMakeLists.txt
+++ b/TileCalorimeter/TileG4/TileAncillary/MinBiasScintillator/CMakeLists.txt
@@ -7,7 +7,7 @@ atlas_subdir( MinBiasScintillator )
# Declare the package's dependencies:
atlas_depends_on_subdirs( PUBLIC
- Tools/AtlasDoxygen
+
PRIVATE
Calorimeter/CaloDetDescr
Calorimeter/CaloIdentifier
diff --git a/TileCalorimeter/TileG4/TileAncillary/MuonWall/CMakeLists.txt b/TileCalorimeter/TileG4/TileAncillary/MuonWall/CMakeLists.txt
index 4d0606ea4a18ab32aab607fc1544c259cc6dba0a..61baaab34bd42b780c37626fb1f64b63feb779b5 100644
--- a/TileCalorimeter/TileG4/TileAncillary/MuonWall/CMakeLists.txt
+++ b/TileCalorimeter/TileG4/TileAncillary/MuonWall/CMakeLists.txt
@@ -7,7 +7,7 @@ atlas_subdir( MuonWall )
# Declare the package's dependencies:
atlas_depends_on_subdirs( PUBLIC
- Tools/AtlasDoxygen
+
PRIVATE
Calorimeter/CaloIdentifier
Control/CxxUtils
diff --git a/TileCalorimeter/TileG4/TileAncillary/PhantomCalorimeter/CMakeLists.txt b/TileCalorimeter/TileG4/TileAncillary/PhantomCalorimeter/CMakeLists.txt
index a41e63804d6e11bb402e46efabdb6f466cd27f3c..15ae2c982ce9b7ec9005abf9971a86123c8f7b53 100644
--- a/TileCalorimeter/TileG4/TileAncillary/PhantomCalorimeter/CMakeLists.txt
+++ b/TileCalorimeter/TileG4/TileAncillary/PhantomCalorimeter/CMakeLists.txt
@@ -7,7 +7,7 @@ atlas_subdir( PhantomCalorimeter )
# Declare the package's dependencies:
atlas_depends_on_subdirs( PUBLIC
- Tools/AtlasDoxygen
+
PRIVATE
Calorimeter/CaloIdentifier
Control/CxxUtils
diff --git a/TileCalorimeter/TileG4/TileGeoG4Calib/CMakeLists.txt b/TileCalorimeter/TileG4/TileGeoG4Calib/CMakeLists.txt
index 9b4d2a9b142268b27f9d5bd211d8bb6107e0e82f..76d15b0031ebc2586a15f3305c08a91c3e5e89ab 100644
--- a/TileCalorimeter/TileG4/TileGeoG4Calib/CMakeLists.txt
+++ b/TileCalorimeter/TileG4/TileGeoG4Calib/CMakeLists.txt
@@ -7,7 +7,7 @@ atlas_subdir( TileGeoG4Calib )
# Declare the package's dependencies:
atlas_depends_on_subdirs( PUBLIC
- Tools/AtlasDoxygen
+
PRIVATE
Calorimeter/CaloG4Sim
Calorimeter/CaloIdentifier
diff --git a/TileCalorimeter/TileG4/TileGeoG4SD/CMakeLists.txt b/TileCalorimeter/TileG4/TileGeoG4SD/CMakeLists.txt
index baa30e765d040e6329d2c1aa989928b4fbb479f1..3808b9bca3cd572b95739cfb21811690237b8fdc 100644
--- a/TileCalorimeter/TileG4/TileGeoG4SD/CMakeLists.txt
+++ b/TileCalorimeter/TileG4/TileGeoG4SD/CMakeLists.txt
@@ -9,7 +9,7 @@ atlas_subdir( TileGeoG4SD )
atlas_depends_on_subdirs( PUBLIC
TileCalorimeter/TileDetDescr
TileCalorimeter/TileSimEvent
- Tools/AtlasDoxygen
+
PRIVATE
Calorimeter/CaloIdentifier
Control/StoreGate
diff --git a/TileCalorimeter/TileSimEvent/CMakeLists.txt b/TileCalorimeter/TileSimEvent/CMakeLists.txt
index 6747bf38a30755f1d402e5cc3433dc602abf8255..ca401ddf8ed06db02a9229214a0806a819a48c9f 100644
--- a/TileCalorimeter/TileSimEvent/CMakeLists.txt
+++ b/TileCalorimeter/TileSimEvent/CMakeLists.txt
@@ -11,7 +11,7 @@ atlas_depends_on_subdirs( PUBLIC
Control/SGTools
DetectorDescription/Identifier
Simulation/HitManagement
- Tools/AtlasDoxygen
+
PRIVATE
Calorimeter/CaloIdentifier
TileCalorimeter/TileConditions )
diff --git a/Tools/AtlasDoxygen/CMakeLists.txt b/Tools/AtlasDoxygen/CMakeLists.txt
deleted file mode 100644
index 339f9228ab06e363db340b16d66688dd2c191da2..0000000000000000000000000000000000000000
--- a/Tools/AtlasDoxygen/CMakeLists.txt
+++ /dev/null
@@ -1,19 +0,0 @@
-################################################################################
-# Package: AtlasDoxygen
-################################################################################
-
-# Declare the package name:
-atlas_subdir( AtlasDoxygen )
-
-# this line failed automatic conversion in cmt2cmake :
-# path_remove DOTFONTPATH "" Linux&Doxygen "AtlasDoxygen"
-
-# this line failed automatic conversion in cmt2cmake :
-# path_remove PATH "" Doxygen "/doxygen/"
-
-# this line failed automatic conversion in cmt2cmake :
-# path_remove PATH "" Doxygen "/graphviz/"
-
-# this line failed automatic conversion in cmt2cmake :
-# action doxygen "python ${AtlasDoxygen_root}/cmt/doxygen.py $(cmt_args)"
-
diff --git a/Tools/AtlasDoxygen/cmt/DoxygenLayout.xml b/Tools/AtlasDoxygen/cmt/DoxygenLayout.xml
deleted file mode 100644
index 9d8c1ad551efba72c05c6df98effbeb60aec6a29..0000000000000000000000000000000000000000
--- a/Tools/AtlasDoxygen/cmt/DoxygenLayout.xml
+++ /dev/null
@@ -1,195 +0,0 @@
-<doxygenlayout version="1.0">
- <!-- Generated by doxygen 1.8.9.1 -->
- <!-- Navigation index tabs for HTML output -->
- <navindex>
- <tab type="mainpage" visible="yes" title=""/>
- <tab type="pages" visible="yes" title="" intro=""/>
- <tab type="modules" visible="yes" title="" intro=""/>
- <tab type="namespaces" visible="yes" title="">
- <tab type="namespacelist" visible="yes" title="" intro=""/>
- <tab type="namespacemembers" visible="yes" title="" intro=""/>
- </tab>
- <tab type="classes" visible="yes" title="">
- <tab type="classlist" visible="yes" title="" intro=""/>
- <tab type="classindex" visible="$ALPHABETICAL_INDEX" title=""/>
- <tab type="hierarchy" visible="yes" title="" intro=""/>
- <tab type="classmembers" visible="yes" title="" intro=""/>
- </tab>
- <tab type="files" visible="yes" title="">
- <tab type="filelist" visible="yes" title="" intro=""/>
- <tab type="globals" visible="yes" title="" intro=""/>
- </tab>
- <tab type="user" visible="yes" url="https://gitlab.cern.ch/atlas/athena" title="GITLAB"/>
- <!-- SVNLINK -->
- </navindex>
-
- <!-- Layout definition for a class page -->
- <class>
- <briefdescription visible="yes"/>
- <includes visible="$SHOW_INCLUDE_FILES"/>
- <inheritancegraph visible="$CLASS_GRAPH"/>
- <collaborationgraph visible="$COLLABORATION_GRAPH"/>
- <memberdecl>
- <nestedclasses visible="yes" title=""/>
- <publictypes title=""/>
- <services title=""/>
- <interfaces title=""/>
- <publicslots title=""/>
- <signals title=""/>
- <publicmethods title=""/>
- <publicstaticmethods title=""/>
- <publicattributes title=""/>
- <publicstaticattributes title=""/>
- <protectedtypes title=""/>
- <protectedslots title=""/>
- <protectedmethods title=""/>
- <protectedstaticmethods title=""/>
- <protectedattributes title=""/>
- <protectedstaticattributes title=""/>
- <packagetypes title=""/>
- <packagemethods title=""/>
- <packagestaticmethods title=""/>
- <packageattributes title=""/>
- <packagestaticattributes title=""/>
- <properties title=""/>
- <events title=""/>
- <privatetypes title=""/>
- <privateslots title=""/>
- <privatemethods title=""/>
- <privatestaticmethods title=""/>
- <privateattributes title=""/>
- <privatestaticattributes title=""/>
- <friends title=""/>
- <related title="" subtitle=""/>
- <membergroups visible="yes"/>
- </memberdecl>
- <detaileddescription title=""/>
- <memberdef>
- <inlineclasses title=""/>
- <typedefs title=""/>
- <enums title=""/>
- <services title=""/>
- <interfaces title=""/>
- <constructors title=""/>
- <functions title=""/>
- <related title=""/>
- <variables title=""/>
- <properties title=""/>
- <events title=""/>
- </memberdef>
- <allmemberslink visible="yes"/>
- <usedfiles visible="$SHOW_USED_FILES"/>
- <authorsection visible="yes"/>
- </class>
-
- <!-- Layout definition for a namespace page -->
- <namespace>
- <briefdescription visible="yes"/>
- <memberdecl>
- <nestednamespaces visible="yes" title=""/>
- <constantgroups visible="yes" title=""/>
- <classes visible="yes" title=""/>
- <typedefs title=""/>
- <enums title=""/>
- <functions title=""/>
- <variables title=""/>
- <membergroups visible="yes"/>
- </memberdecl>
- <detaileddescription title=""/>
- <memberdef>
- <inlineclasses title=""/>
- <typedefs title=""/>
- <enums title=""/>
- <functions title=""/>
- <variables title=""/>
- </memberdef>
- <authorsection visible="yes"/>
- </namespace>
-
- <!-- Layout definition for a file page -->
- <file>
- <briefdescription visible="yes"/>
- <includes visible="$SHOW_INCLUDE_FILES"/>
- <includegraph visible="$INCLUDE_GRAPH"/>
- <includedbygraph visible="$INCLUDED_BY_GRAPH"/>
- <sourcelink visible="yes"/>
- <memberdecl>
- <classes visible="yes" title=""/>
- <namespaces visible="yes" title=""/>
- <constantgroups visible="yes" title=""/>
- <defines title=""/>
- <typedefs title=""/>
- <enums title=""/>
- <functions title=""/>
- <variables title=""/>
- <membergroups visible="yes"/>
- </memberdecl>
- <detaileddescription title=""/>
- <memberdef>
- <inlineclasses title=""/>
- <defines title=""/>
- <typedefs title=""/>
- <enums title=""/>
- <functions title=""/>
- <variables title=""/>
- </memberdef>
- <authorsection/>
- </file>
-
- <!-- Layout definition for a group page -->
- <group>
- <briefdescription visible="yes"/>
- <groupgraph visible="$GROUP_GRAPHS"/>
- <memberdecl>
- <nestedgroups visible="yes" title=""/>
- <dirs visible="yes" title=""/>
- <files visible="yes" title=""/>
- <namespaces visible="yes" title=""/>
- <classes visible="yes" title=""/>
- <defines title=""/>
- <typedefs title=""/>
- <enums title=""/>
- <enumvalues title=""/>
- <functions title=""/>
- <variables title=""/>
- <signals title=""/>
- <publicslots title=""/>
- <protectedslots title=""/>
- <privateslots title=""/>
- <events title=""/>
- <properties title=""/>
- <friends title=""/>
- <membergroups visible="yes"/>
- </memberdecl>
- <detaileddescription title=""/>
- <memberdef>
- <pagedocs/>
- <inlineclasses title=""/>
- <defines title=""/>
- <typedefs title=""/>
- <enums title=""/>
- <enumvalues title=""/>
- <functions title=""/>
- <variables title=""/>
- <signals title=""/>
- <publicslots title=""/>
- <protectedslots title=""/>
- <privateslots title=""/>
- <events title=""/>
- <properties title=""/>
- <friends title=""/>
- </memberdef>
- <authorsection visible="yes"/>
- </group>
-
- <!-- Layout definition for a directory page -->
- <directory>
- <briefdescription visible="yes"/>
- <directorygraph visible="yes"/>
- <memberdecl>
- <dirs visible="yes"/>
- <files visible="yes"/>
- </memberdecl>
- <detaileddescription title=""/>
- </directory>
-</doxygenlayout>
diff --git a/Tools/AtlasDoxygen/cmt/XMLList.txt b/Tools/AtlasDoxygen/cmt/XMLList.txt
deleted file mode 100755
index 4e06dd3c9418c3b852e47adb61dd67705fd268c1..0000000000000000000000000000000000000000
--- a/Tools/AtlasDoxygen/cmt/XMLList.txt
+++ /dev/null
@@ -1,32 +0,0 @@
-#Packages for which Doxygen will produce XML output
-
-AnalysisTriggerEvent
-CaloEvent
-EventInfo
-GeneratorObjects
-HepMC
-JetEvent
-JetTagEvent
-McParticleEvent
-NavFourMom
-MissingETEvent
-Particle
-TileEvent
-TrackRecord
-TrigEFMissingET
-TrigInDetEvent
-TrigSteeringEvent
-TrkTrack
-TrkEventPrimitives
-TrkMeasurementBase
-TrkParameters
-TrkParametersBase
-TrkTruthData
-VxVertex
-egammaEvent
-muonEvent
-tauEvent
-LArRecEvent
-TrigParticle
-TrigMuonEvent
-TrigCaloEvent
diff --git a/Tools/AtlasDoxygen/cmt/cmtdoc.py b/Tools/AtlasDoxygen/cmt/cmtdoc.py
deleted file mode 100755
index e0c5f7a057a61c333acea7d48825beaa7be8c763..0000000000000000000000000000000000000000
--- a/Tools/AtlasDoxygen/cmt/cmtdoc.py
+++ /dev/null
@@ -1,241 +0,0 @@
-# Copyright (C) 2002-2017 CERN for the benefit of the ATLAS collaboration
-
-
-#------------------------------------------------------------
-#
-# Script to generate HTML representation of the doxygen-like comments written in
-# a CMT requirements file
-#
-# All documentation comments considered by this script must be prefixed by '##'
-#
-# Special actions are triggered by special keywords:
-#
-# o a keyword must be the first word of a documentation comment.
-# o all documentation lines related with a given keyword must appear in
-# a single comment block (ie all lines in this block are prefixed with '##'
-# o a keyword always start with a '@' sign
-#
-#--------------------------------------------
-# KEYWORDS
-#--------------------------------------------
-# @pattern <name>
-# doc line
-# doc line
-# doc line
-# @arg <name> <description>
-#
-# Describe a CMT pattern and its arguments
-#
-#--------------------------------------------
-# USAGE
-#--------------------------------------------
-# o Since this script reads the requirements file, it must be activated while
-# being in the cmt directory of the package
-# o The HTML format is generated to standard output
-#
-# Typical usage:
-#
-# > cd ..../cmt
-# > python /afs/cern.ch/atlas/scripts/cmtdoc.py >../doc/cmtdoc.html
-# > vi ../doc/mainpage.h
-# @htmlinclude cmtdoc.html
-# > gmake doxygen
-#
-#------------------------------------------------------------
-import sys
-import string
-import re
-
-
-lines = []
-in_pattern = False
-in_define_pattern = False
-docs = dict ()
-defs = dict ()
-arg_lists = dict ()
-pattern_name = ''
-
-comment_prefix = '##'
-comment_prefix_length = len (comment_prefix)
-
-
-def get_doc (lines):
- doc = []
- for line in lines:
- doc.append (string.rstrip (string.lstrip (line, '#')))
- return (doc)
- # end show_pattern
-
-def html_begin_table ():
- print '<table width="100%" border="0" cellspacing="1" bgcolor="#000000" cellpadding="2">'
- print ''
- print '<tr valign="top" bgcolor="#eeeebb">'
- print ' <td><center><i>name</i></center></td>'
- print ' <td><center><i>description</i></center></td>'
- print ' <td><center><i>args</i></center></td>'
- print '</tr>'
- print ''
-
-def html_pattern_row (name, docs, arg_lists):
- print '<tr valign="top" bgcolor="#ffffff">'
- print ' <td><tt><a href="#pattern ' + name + '">' + name + '</a></tt></td>'
- print ' <td>'
- if docs.has_key (name):
- for line in docs[name]:
- line = re.sub ('<', '<', line)
- line = re.sub ('>', '>', line)
- print line
- else:
- print ' '
- print '</td>'
- print ' <td>'
- if arg_lists.has_key (name):
- print '<table>'
- arg_list = arg_lists[name]
- for arg in arg_list:
- line = arg_list[arg]
- line = re.sub ('<', '<', line)
- line = re.sub ('>', '>', line)
- print '<tr valign="top"><td width="60"><tt>' + arg + '</tt></td><td>' + line + '</td></tr>'
- print '</table>'
- else:
- print ' '
- print "</tr>"
-
-def html_end_table ():
- print '</table>';
-
-def html_pattern_def (name, defs):
- print '<h2><a name="pattern ' + name + '"></a><tt>' + name + '</tt></h2>'
- print ''
- if defs.has_key (name):
- print '<pre><FONT color="green">'
- lines = defs[name]
- for line in lines:
- line = re.sub ('<', '<', line)
- line = re.sub ('>', '>', line)
- print line
- print '</FONT></pre>'
- print ''
-
-#
-# Main
-#
-
-f = open ('requirements')
-for line in f.readlines ():
- w = string.split (line)
- if len(w) == 0:
- continue
-
- if line[0:comment_prefix_length] == comment_prefix:
- #
- # Doxygen comments may be inserted into CMT comment lines
- #
- # First word may be a parameter
- #
- key = ' '
- if len(w) > 1:
- key = w[1]
-
- if key[0:1] == '@':
- #
- # Check the keyword
- #
- keyword = w[1]
- if keyword == '@pattern':
- if in_pattern:
- # Any other keyword finishes that section
- docs[pattern_name] = get_doc (lines)
- in_pattern = False
- lines = []
-
- # Syntax : @pattern <name>
- in_pattern = True
- pattern_name = w[2]
- continue
- if keyword == '@arg':
- if in_pattern:
- # Syntax : @arg <name> <description>
- if not arg_lists.has_key (pattern_name):
- arg_lists[pattern_name] = dict ()
-
- arg = w[2]
- arg_line = string.join (w[3:])
- arg_lists[pattern_name][arg] = arg_line
- continue
-
- if in_pattern:
- # Any other keyword finishes that section
- docs[pattern_name] = get_doc (lines)
- in_pattern = False
- lines = []
-
- if in_pattern:
- lines.append (line)
-
- continue
-
- #
- # This is a normal CMT statement
- #
- if in_pattern:
- #
- # Previous line was inside a doxygen comment block, we must finish it
- #
- docs[pattern_name] = get_doc (lines)
- in_pattern = False
- lines = []
-
- #
- # Running definition
- #
- if in_define_pattern:
- line = string.rstrip (line)
- lines.append (line)
- if line[-1] == '\\':
- in_define_pattern = True
- else:
- in_define_pattern = False
- defs[pattern_name] = lines;
- lines = []
- continue
-
- #
- # Check the CMT keyword
- #
- if w[0] == 'pattern':
- line = string.rstrip (line)
- lines.append (line)
- name = w[1]
- if name == '-global':
- name = w[2]
-
- if line[-1] == '\\':
- pattern_name = name
- in_define_pattern = True
- else:
- in_define_pattern = False
- defs[name] = lines;
- lines = []
- continue
-
-
-#------------------------------------------------------------
-# The parsing is now finished
-# Now generate HTML
-#
-
-#
-# Generate the pattern table
-#
-html_begin_table ()
-for key in defs:
- html_pattern_row (key, docs, arg_lists)
-html_end_table ()
-
-#
-# Generate the pattern definition list
-#
-for key in defs:
- html_pattern_def (key, defs)
diff --git a/Tools/AtlasDoxygen/cmt/doxygen.py b/Tools/AtlasDoxygen/cmt/doxygen.py
deleted file mode 100755
index 7baaebc29e9e0129ead150bcb730adbd816b2b34..0000000000000000000000000000000000000000
--- a/Tools/AtlasDoxygen/cmt/doxygen.py
+++ /dev/null
@@ -1,897 +0,0 @@
-# Copyright (C) 2002-2017 CERN for the benefit of the ATLAS collaboration
-
-
-
-# -*- coding: iso-8859-1 -*-
-
-import os
-import sys
-import string
-import popen2
-import stat
-import re
-import time
-import commands
-import select
-
-from os.path import join
-
-############################################################################
-## Error and success return function
-def S_ERROR( sMessage = '' ):
- return { 'Status': ERROR, 'OK' : 0, 'Message' : sMessage }
-
-def S_OK( sValue = None, sPname = 'Value' ):
- dResult = { 'Status': 'OK', 'OK' : 1 }
- if sValue is not None:
- dResult[ sPname ] = sValue
- return dResult
-
-############################################################################
-class SubprocessExecuter:
-
- def __init__( self, iTimeout = False ):
- self.changeTimeout( iTimeout )
- self.iBufferLimit = 5242880 # 5MB limit for data
-
- def changeTimeout( self, iTimeout ):
- self.iTimeout = iTimeout
- if self.iTimeout == 0:
- self.iTimeout = False
-
- def __readFromPipe( self, oPipe, iBaseLength = 0 ):
- sData = ""
- iMaxSliceLength = 8192
- iLastSliceLength = 8192
-
- while iLastSliceLength == iMaxSliceLength:
- sReadBuffer = os.read( oPipe, iMaxSliceLength )
- iLastSliceLength = len( sReadBuffer )
- sData += sReadBuffer
- if len( sData ) + iBaseLength > self.iBufferLimit:
- dRetVal = S_ERROR( "Reached maximum allowed length (%d bytes) for called function return value" % self.iBufferLimit )
- dRetVal[ 'ReadData' ] = sData
- return dRetVal
-
- return S_OK( sData )
-
- def __executePythonFunction( self, oFunc, stArgs, oWritePipe ):
- try:
- os.write( oWritePipe, "%s\n" % str( S_OK( oFunc( *stArgs ) ) ) )
- except Exception, v:
- os.write( oWritePipe, "%s\n" % str( S_ERROR( str( v ) ) ) )
- try:
- os.close( oWritePipe )
- finally:
- os._exit(0)
-
- def __selectFD( self, lR, iTimeout = False ):
- if self.iTimeout and not iTimeout:
- iTimeout = self.iTimeout
- if not iTimeout:
- return select.select( lR , [], [] )[0]
- else:
- return select.select( lR , [], [], iTimeout )[0]
-
- def pythonCall( self, oFunction, stArgs ):
- oReadPipe, oWritePipe = os.pipe()
- iPid = os.fork()
- if iPid == 0:
- os.close( oReadPipe )
- self.__executePythonFunction( oFunction, stArgs, oWritePipe )
- os.close( oWritePipe )
- else:
- os.close( oWritePipe )
- lReadable = self.__selectFD( [ oReadPipe ] )
- if len( lReadable ) == 0:
- os.close( oReadPipe )
- os.kill( iPid, 9 )
- os.waitpid( iPid, 0 )
- return S_ERROR( "%d seconds timeout for '%s' call" % ( self.iTimeout, oFunction.__name__ ) )
- elif lReadable[0] == oReadPipe:
- dData = self.__readFromPipe( oReadPipe )
- os.close( oReadPipe )
- os.waitpid( iPid, 0 )
- if dData[ 'OK' ]:
- return eval( dData[ 'Value' ] )
- return dData
-
- def __generateSystemCommandError( self, sMessage ):
- retVal = S_ERROR( sMessage )
- retVal[ 'stdout' ] = self.lBuffers[0][0]
- retVal[ 'stderr' ] = self.lBuffers[1][0]
- return retVal
-
- def __readFromFile( self, oFile, iBaseLength, bAll ):
- try:
- if bAll:
- sData = "".join( oFile.readlines() )
- else:
- sData = oFile.readline()
- except Exception, v:
- pass
- if sData == "":
- #self.checkAlive()
- self.bAlive = False
- if len( sData ) + iBaseLength > self.iBufferLimit:
- dRetVal = S_ERROR( "Reached maximum allowed length (%d bytes) for called function return value" % self.iBufferLimit )
- dRetVal[ 'ReadData' ] = sData
- return dRetVal
-
- return S_OK( sData )
-
- def __readFromSystemCommandOutput( self, oFile, iDataIndex, bAll = False ):
- retVal = self.__readFromFile( oFile, len( self.lBuffers[ iDataIndex ][0] ), bAll )
- if retVal[ 'OK' ]:
- self.lBuffers[ iDataIndex ][0] += retVal[ 'Value' ]
- if not self.oCallback == None:
- while self.__callLineCallback( iDataIndex ):
- pass
- return S_OK()
- else:
- self.lBuffers[ iDataIndex ][0] += retVal[ 'ReadData' ]
- os.kill( self.oChild.pid, 9 )
- self.oChild.wait()
- return self.__generateSystemCommandError( "Exceeded maximum buffer size ( %d bytes ) timeout for '%s' call" % ( self.iBufferLimit, self.sCmd ) )
-
- def systemCall( self, sCmd, oCallbackFunction = None ):
- self.sCmd = sCmd
- self.oCallback = oCallbackFunction
- self.oChild = popen2.Popen3( self.sCmd, True )
- self.lBuffers = [ [ "", 0 ], [ "", 0 ] ]
- iInitialTime = time.time()
- iExitStatus = self.oChild.poll()
-
- while iExitStatus == -1:
- retVal = self.__readFromCommand()
- if not retVal[ 'OK' ]:
- return retVal
- if self.iTimeout and time.time() - iInitialTime > self.iTimeout:
- os.kill( self.oChild.pid, 9 )
- self.oChild.wait()
- self.__readFromCommand( True )
- self.oChild.fromchild.close()
- self.oChild.childerr.close()
- return self.__generateSystemCommandError( "Timeout (%d seconds) for '%s' call" % ( self.iTimeout, sCmd ) )
- iExitStatus = self.oChild.poll()
-
- self.__readFromCommand(True )
-
- self.oChild.fromchild.close()
- self.oChild.childerr.close()
- return S_OK( ( iExitStatus / 256, self.lBuffers[0][0], self.lBuffers[1][0] ) )
-
- def __readFromCommand( self, bLast = False ):
- if bLast:
- retVal = self.__readFromSystemCommandOutput( self.oChild.fromchild, 0, True )
- if not retVal[ 'OK' ]:
- return retVal
- retVal = self.__readFromSystemCommandOutput( self.oChild.childerr, 1, True )
- if not retVal[ 'OK' ]:
- return retVal
- else:
- lReadable = self.__selectFD( [ self.oChild.fromchild, self.oChild.childerr ], 1 )
- if self.oChild.fromchild in lReadable:
- retVal = self.__readFromSystemCommandOutput( self.oChild.fromchild, 0 )
- if not retVal[ 'OK' ]:
- return retVal
- if self.oChild.childerr in lReadable:
- retVal = self.__readFromSystemCommandOutput( self.oChild.childerr, 1 )
- if not retVal[ 'OK' ]:
- return retVal
- return S_OK()
-
-
- def __callLineCallback( self, iIndex ):
- iNextLine = self.lBuffers[ iIndex ][0][ self.lBuffers[ iIndex ][1]: ].find( "\n" )
- if iNextLine > -1:
- self.oCallback( iIndex, self.lBuffers[ iIndex ][0][ self.lBuffers[ iIndex ][1]: self.lBuffers[ iIndex ][1] + iNextLine ] )
- self.lBuffers[ iIndex ][1] += iNextLine + 1
- return True
- return False
-
-############################################################################
-def redirectOutput(index, buffer):
- """Filter function to redirect the std output and error of the job
- executable for real-time debugging
- """
- print buffer
-
-
-############################################################################
-def exeCommand( sCmd, iTimeout = 0, oLineCallback = redirectOutput):
- """Return ( status, output, error, pythonError ) of executing cmd in a shell."""
- oSPE = SubprocessExecuter( iTimeout )
- retVal = oSPE.systemCall( sCmd, oLineCallback )
- if retVal[ 'OK' ]:
- return retVal[ 'Value' ][0], retVal[ 'Value' ][1], retVal[ 'Value' ][2], 0
- else:
- if re.search("Timeout",retVal['Message']):
- return 1, retVal['stdout'], retVal['Message'], 2
- else:
- return 1, retVal['stdout'], retVal['stderr'], 1
-
-#################################################################################
-###################################### EoF ######################################
-#################################################################################
-#----------------------------------------------------
-def removedirs (top):
- # Delete everything reachable from the directory named in 'top'.
- # CAUTION: This is dangerous! For example, if top == '/', it
- # could delete all your disk files.
- if os.path.exists (top):
- for root, dirs, files in os.walk (top, topdown=False):
- for name in files:
- name = root + '/' + name
- os.chmod (name, stat.S_IWRITE)
- #print name
- os.remove (name)
- for name in dirs:
- name = root + '/' + name
- os.chmod (name, stat.S_IWRITE)
- #print name
- os.rmdir (name)
- os.chmod (top, stat.S_IWRITE)
- #print top
- os.rmdir (top)
-# def removedirs (top)
-
-
-#----------------------------------------------------
-#
-# Executing a shell command
-#
-def execute (cmd):
- #print '> ' + cmd
- r, w, e = popen2.popen3(cmd)
- lines = []
- for line in r.readlines():
- ##print line
- line = string.rstrip (line)
- lines.append (line)
- #for line in e.readlines():
- # line = string.rstrip (line)
- # lines.append (line)
- r.close()
- w.close()
- e.close()
- return lines
-# def execute (cmd)
-
-#----------------------------------------------------
-#
-# Display a set of lines
-#
-def show_lines (lines):
- for line in lines:
- print line
-# def show_lines (lines)
-
-#----------------------------------------------------
-#
-# Wrapper class for CMT.
-#
-# Prefetch the set of macros and tags
-#
-class Cmt:
-
-
-
- def expand_pattern (self, text, p1, p2):
- v = text
- rexp = ''
- for c in p1:
- rexp += r'[' + c + r']'
- rexp += '([^' + p2 + r']*)[' + p2 + r']'
- while True:
- ms = re.findall (rexp, v)
- if len(ms) == 0:
- break
- for m in ms:
- if m in self.macros:
- v = string.replace (v, p1 + m + p2, self.macros[m])
- elif m in os.environ:
- v = string.replace (v, p1 + m + p2, os.environ [m])
- else:
- v = string.replace (v, p1 + m + p2, '')
- # while True
- return (v)
-
- def expand (self, text):
- v = text
- v = self.expand_pattern (v, '$(', ')')
- v = self.expand_pattern (v, '${', '}')
- v = self.expand_pattern (v, '%', '%')
- return (v)
- # expand
-
- # Pre-fetch the macro values and expand all of them
- def init_macros (self):
- lines = execute (self.cmtexe + ' show macros')
- for line in lines:
- w = string.split (line, '=')
- name = w[0]
- if len(w)>=2:
- value = re.sub ('^[\']', '', w[1])
- value = re.sub ('[\']$', '', value)
- self.macros [name] = value
- for key in self.macros.keys():
- self.macros[key] = self.expand (self.macros[key])
- #print key + '=' + v
- # for key in self.macros.keys():
- # init_macros
-
- def init_sets (self):
- lines = execute (self.cmtexe + ' show sets')
- for line in lines:
- w = string.split (line, '=')
- name = w[0]
- if len(w)>=2:
- value = re.sub ('^[\']', '', w[1])
- value = re.sub ('[\']$', '', value)
- self.macros [name] = value
- for key in self.macros.keys():
- self.macros[key] = self.expand (self.macros[key])
- #print key + '=' + v
- # for key in self.macros.keys():
- # init_sets
-
- def init_tags (self):
- lines = execute (self.cmtexe + ' show tags')
- for line in lines:
- w = string.split (line, ' ')
- name = w[0]
- #print 'tag=' + name
- self.tags [name] = True
- # init_tags
-
- def init_uses (self):
- lines = execute (self.cmtexe + ' show uses')
- for line in lines:
- if line[0] == '#':
- if line[0:5] == '# use':
- w = string.split (line, ' ')
- #print 'init_uses> [' + w[2] + ']'
- self.top_uses.append (w[2])
- continue
- self.uses.append (line)
- # init_uses
-
- # Constructor
- def __init__(self, tags=""):
- self.cmtexe = os.environ ['CMTROOT'] + '/' + os.environ ['CMTBIN'] + '/cmt.exe -tag_add=Doxygen,'+tags+' '
- self.macros = dict ()
- self.tags = dict ()
- self.sets = dict ()
- self.uses = []
- self.top_uses = []
- self.init_sets ()
- self.init_macros ()
- self.init_tags ()
- self.init_uses ()
- # __init__
-
- def macro_value (self, name):
- if not self.macros.has_key (name):
- return ''
- #print 'self.macros['+name+']=' + self.macros[name]
- return self.macros[name]
- # macro_value
-
- def tag (self, name):
- if not self.tags.has_key (name):
- return False
- return True
- # tag
-
- def do (self, cmd):
- execute (self.cmtexe + ' ' + cmd)
- # do
-
-# class Cmt
-
-#----------------------------------------------------
-#
-# Copy the template Doxyfile from the Doxygen interface
-# Expand against CMT macros
-# Manually add some Doxyfile statements
-#
-def filter_doxyfile (doxygen_input, doxygen_html_output, tagfiles, package_tagfile):
- XmlYes = 0
- # FIXME - commenting out for the moment, until I get everything else working
-
- # xmllist = open (DoxygenRoot + '/cmt/XMLList.txt')
- # lines = xmllist.readlines ()
- # xmllist.close ()
- # for packlist in lines:
- # w = string.split (packlist)
- # if len (w) > 0:
- # if w[0] == package:
- # XmlYes=1
- # break
- f = open (DoxygenRoot + '/cmt/Doxyfile')
- lines = f.readlines ()
- f.close ()
- g = open ('Doxyfile', 'w')
- package = package_tagfile.split('/')[-1].split('.')[0]
- # print "Going over Doxyfile lines:"
- for line in lines:
- w = string.split (line)
- if len (w) > 0:
- if w[0] == 'INPUT':
- line = 'INPUT = ' + doxygen_input + '\n'
- elif w[0] == 'OUTPUT_DIRECTORY':
- line = 'OUTPUT_DIRECTORY = ' + doxygen_html_output + '\n'
- elif w[0] == 'TAGFILES':
- line = 'TAGFILES = ' + ' '.join(tagfiles) + '\n'
- elif w[0] == 'GENERATE_TAGFILE':
- line = 'GENERATE_TAGFILE = ' + package_tagfile + '\n'
- elif w[0] == 'EXTERNAL_SEARCH_ID':
- line = 'EXTERNAL_SEARCH_ID = ' + package + '\n'
- elif w[0] == 'EXTRA_SEARCH_MAPPINGS':
- line = 'EXTRA_SEARCH_MAPPINGS = ' + package + '=' + '../../' + package + '/html\n'
- elif (w[0] == 'GENERATE_HTML'):
- if package_tagfile=='':
- # Only generate HTML in the second pass, where we DON'T make a tag file
- line = 'GENERATE_HTML = YES' + '\n'
- else:
- line = 'GENERATE_HTML = NO' + '\n'
- elif (XmlYes and w[0] == 'GENERATE_XML'):
- line = 'GENERATE_XML = ' + 'YES' + '\n'
- else:
- line = cmt.expand (line)
-# if line.startswith("STRIP_FROM_PATH"):
-# print line
-# print line
- g.write (line)
- g.close ()
-# filter_doxyfile
-
-#----------------------------------------------------
-#
-# Construct the list of expected tag files from the list of used packages
-# and the list of used packages to display in the HTML table
-#
-def filter_uses ( output_dir ):
- used_packages = ''
- tagfiles = []
- # common_output = cmt.macro_value ('DOXYGEN_COMMON_OUTPUT_DIRECTORY')+'/InstallArea/doc' #FIXME! Should use something like build_output_dir
-
- for line in cmt.uses:
- w = string.split (line)
- package = w[1]
-
- if package == 'CMT':
- continue
-
- offset = cmt.macro_value (package + '_offset')
-
- if offset == 'CMT':
- continue
-
- if offset != '':
- offset = offset + '/'
-
- # I don't know why we care about finding the tagfile - just assume they exist? EJWM
- # path = os.path.normpath (build_output_dir (package) + '/' + package + '.tag')
- # print 'path=',path
- # if os.path.isfile (path):
- # print package + '.tag found in ' + path
- # tagfiles = tagfiles + ' ' + path
-
- if package in cmt.top_uses:
- # print ' top use=',package
- used_packages = used_packages + ' ' + offset + package
- # New approach - fill tagfiles with the 'topuses' and complete doxygen-compatible format.
- # Doxygen uses funky format here: path/to/compB/compB.tag=path/to/compB/htmldocs
- # tagfile = common_output+"/"+package + '.tag='+"../../"+package+'/html'
- # tagfile = output_dir+'/'+package + '.tag='+output_dir+'/'+package+'/html'
- tagfile = output_dir+'/'+package + '.tag=../../'+package+'/html'
- # print 'tagfile = '+tagfile
- tagfiles.append(tagfile)
- # else:
- # print 'NOT top use=',package
-
- #for line in cmt.uses
-
- return used_packages, tagfiles
-# filter_uses
-
-#----------------------------------------------------
-#
-# Construct the command to list a directory according to the platform
-#
-def get_ls_cmd ():
- #print 'Platform=' + sys.platform
- if sys.platform == 'win32':
- return 'dir'
- else:
- return 'ls'
-# get_ls_cmd
-
-#----------------------------------------------------
-#
-# Perform the relocation of html files WRT tagfiles
-#
-def relocate (output, tagfiles, html_mapping):
- print 'Now relocating output files'
-
- #tagfiles += cmt.macro_value ('Doxygen_extra_tagfiles')
-
- # tagfiles contains the list of all <P>.tag files for all used packages
- #print 'tagfiles = [' + tagfiles + ']'
-
- if len(tagfiles) == 0:
- print 'No tag files -> no way to relocate'
- return
-
- # We build a dictionary
- # dict <tag-file-name, doc-dir>
- # where, for each tag file, we store the address where to install
- # Here again we have to consider the installarea strategy
- # Absolute file paths are converted into URLs
- subs = dict ()
-
- for f in string.split (tagfiles):
- filename = os.path.basename (f)
- package = string.replace (filename, '.tag', '')
- d = build_output_dir (package)
- for m in html_mapping:
- d = string.replace (d, os.path.normpath (m[0]), m[1])
- subs[filename] = string.replace (d, '\\', '/') + '/html/'
-
- os.chdir (output + '/html')
-
- # We now list all files that may refer to a tag, ie tree.js and *.html
- files = []
- for name in os.listdir ('.'):
- if name == 'tree.js':
- files.append (name)
- elif re.search ('[.]html$', name) != None:
- files.append (name)
- # for
-
- if len(files) == 0:
- print 'No file to relocate!'
- return
-
- # Handle all tags
- for key in subs:
- if key == '':
- continue
- if key == 'Doxygen.tag':
- continue
- if key == '_doc':
- continue
- if key == '_cgi':
- continue
-
- #print 'Substituting ' + subs[key] + ' for each occurence of tag file ' + key
-
- pattern1 = r'doxygen="(' + key + r'):([^ \"\t\>\<]*)" (href|src)="'
- repl1 = r'doxygen="' + subs[key] + r'" \3="' + subs[key]
-
- # Special for tree.js
- pattern2 = r'"(' + key + r')\:([^ \"\t\>\<]*)", "'
- repl2 = r'"' + subs[key] + '", "'
-
- #print 'p1 = ' + pattern1 + ' r = ' + repl1
- #print 'p2 = ' + pattern2 + ' r = ' + repl2
-
- for f in files:
- #print 'Editing ' + f
- fbak = f + '.bak' + key
- #fbak = f + '.bak'
- #print 'renaming ' + f + ' into ' + fbak
- if not os.path.isfile (f):
- #print 'File ' + f + ' not found '
- continue
-
- # A copy of the original file is created
- # to keep the unchanged text while the converted one is filled in
- #
- if os.path.isfile (fbak):
- os.remove (fbak)
- os.rename (f, fbak)
- if f != 'tree.js':
- pattern = pattern1
- repl = repl1
- else:
- pattern = pattern2
- repl = repl2
-
- g = open (f, 'w')
- gbak = open (fbak)
-
- for line in gbak:
- line2 = re.sub (pattern, repl, line)
- #if line2 != line:
- # print line
- # print '->' + line2
- g.write (line2)
- # for line in gbak
-
- g.close ()
- gbak.close ()
-
- # Now that the original text file is converted, we
- # can throw the original copy away
- #
- if os.path.isfile (fbak):
- os.remove (fbak)
-
- # for f in files
- # for key in subs
-
-# relocate
-
-#========================================================
-#
-# We consider two cases according to the build_strategy (with or without installarea)
-#
-# with_installarea:
-# <package_cmtpath>/InstallArea/doc/<package>/html
-# without_installarea:
-# <package_root>/doc/html
-
-# This is identical to build_output_dir(), so let's just use that? EJWM
-
-# def build_tag_dir (package):
-# common_output = cmt.macro_value ('DOXYGEN_COMMON_OUTPUT_DIRECTORY')
-# if common_output == '':
-# common_output = cmt.macro_value (package + '_cmtpath')
-# project = cmt.macro_value (package + '_project')
-# package_root = cmt.macro_value (package + '_root')
-#
-# if cmt.tag (project + '_with_installarea'):
-# return (os.path.normpath (common_output + '/InstallArea/doc/'))
-# else:
-# return (os.path.normpath (package_root + '/doc/'))
-# def build_tag_dir (package)
-
-def build_output_dir (package):
- common_output = cmt.macro_value ('DOXYGEN_COMMON_OUTPUT_DIRECTORY')
- if common_output == '':
- common_output = cmt.macro_value (package + '_cmtpath')
-
- project = cmt.macro_value (package + '_project')
- package_root = cmt.macro_value (package + '_root')
-
- if cmt.tag (project + '_with_installarea'):
- return (os.path.normpath (common_output + '/InstallArea/doc/'))
- else:
- return (os.path.normpath (package_root + '/doc/'))
-# def build_output_dir (package)
-
-#----------------------------------------------------
-#
-# Parse html files in dir and replaces pattern with repl
-#
-def parse_html(dir,pattern,repl):
- files = os.listdir(dir)
- for file in files:
- if file.find('.html')>0:
- file = dir + '/' + file
- #print 'file = ',file
- f = open (file)
- # Read file contents to memory. Warning! This may be a memory hog
- contents = f.read ()
- f.close ()
- #print 'contents=', contents
- # Substitute pattern with repl in contents
- contents = re.sub(pattern,repl,contents);
- #print 'contents_new=', contents_new
- # Write to the same file
- f = open (file,'w')
- f.write(contents);
- f.close ()
- # for f in files:
-#def parse_html(dir,pattern,repl)
-
-def f (mapping):
- return (string.split (mapping, '@'))
-# def f
-
-def has_mainpage ():
- if not os.path.isdir (os.path.normpath ('../doc')):
- return (False)
- cmd = get_ls_cmd () + ' ' + os.path.normpath ('../doc')
- lines = execute (cmd)
- for line in lines:
- if string.lower(line) == 'mainpage.h':
- return (True)
- return (False)
-
-# def has_mainpage
-
-
-#----------------------------------------------------
-# Main
-#----------------------------------------------------
-
-if len(sys.argv)==2:
- tags=sys.argv[1][5:]
-else:
- tags=""
-print 'Running Local Doxygen'
-cmt = Cmt (tags)
-#print cmt.tags
-
-
-#----------------------------------------------------
-# Preparing the configuration
-
-DoxygenRoot = cmt.macro_value ('ATLASDOXYGENROOT')
-package = cmt.macro_value ('package')
-project = cmt.macro_value (package + '_project')
-package_root = cmt.macro_value (package + '_root')
-package_cmtpath = cmt.macro_value (package + '_cmtpath')
-
-DOXYGEN_STRIP_FROM_PATH = cmt.macro_value ('DOXYGEN_STRIP_FROM_PATH')
-DOXYGEN_INPUT = cmt.macro_value ('DOXYGEN_INPUT')
-DOXYGEN_FILE_PATTERNS = cmt.macro_value ('DOXYGEN_FILE_PATTERNS')
-DOXYGEN_EXCLUDE = cmt.macro_value ('DOXYGEN_EXCLUDE')
-DOXYGEN_EXCLUDE_PATTERNS = cmt.macro_value ('DOXYGEN_EXCLUDE_PATTERNS')
-
-html_mapping = map (f, string.split (cmt.macro_value ('DOXYGEN_HTML_MAPPING')))
-
-print "DoxygenRoot = ", DoxygenRoot
-
-output = build_output_dir (package)
-writeHTML=False
-package_tagfile=''
-if 'doxygen_tags' in cmt.tags:
- print 'Pass #1 - Making doxygen tags (no HTML)'
- package_tagfile = os.path.normpath (output + '/' + package + '.tag')
- # package_tagfile = package + '.tag'
- # output = "."
-else:
- # Pass #2 so make HTML
- print "Pass #2 - Writing HTML in this pass... (will use tags made in pass#1)"
- writeHTML=True
-
-print 'output=[' + output + ']'
-print 'input=[' + DOXYGEN_INPUT + ']'
-print 'DOXYGEN_FILE_PATTERNS=[' + DOXYGEN_FILE_PATTERNS + ']'
-print 'package_root=' + package_root
-print 'package_tagfile=' + package_tagfile
-
-DOXYGEN_GENERATE_TAGFILE = package_tagfile
-print 'DOXYGEN_GENERATE_TAGFILE=' + DOXYGEN_GENERATE_TAGFILE
-
-used_packages=''
-tagfiles=[]
-if writeHTML:
- # Only care about this for pass#2
- used_packages, tagfiles = filter_uses (output_dir=output)
-print 'used_packages = ' + used_packages
-print 'tagfiles = ' + ' '.join(tagfiles)
-
-#----------------------------------------------------
-# Preparing output
-
-#print 'output = ' + output
-
-if output and not os.path.isdir (output):
- os.makedirs (output)
-
-if not os.path.isdir ('../doc'):
- os.makedirs ('../doc')
-
-if not has_mainpage ():
- f = open ('../doc/mainpage.h', 'w')
- f.write ('/**\n')
- f.write ('\n')
- f.write (' <i>This page has been automatically generated by the tool. Please remove this line when you start creating your own mainpage</i>\n')
- f.write ('\n')
- f.write ('@mainpage\n')
- f.write ('\n')
- f.write ('@htmlinclude used_packages.html\n')
- f.write ('\n')
- f.write ('@include requirements\n')
- f.write ('\n')
- f.write ('*/\n')
- f.close ()
-
-# Only worry about this when we're working with tagfiles?
-if not writeHTML and not os.path.isdir (os.path.dirname (package_tagfile)):
- dirname = os.path.dirname (package_tagfile)
- if (dirname):
- os.makedirs (dirname)
-
-#----------------------------------------------------
-# Constructing the Doxyfile
-#
-# we first have to check the specified list of possible input file patterns
-# since Doxygen is unable to survive empty specifications
-#
-doxygen_input = ''
-for d in string.split (DOXYGEN_INPUT):
- d = os.path.normpath (d)
- if os.path.isdir (d):
- for p in string.split (DOXYGEN_FILE_PATTERNS):
- cmd = get_ls_cmd () + ' ' + os.path.normpath (d + '/' + p)
- lines = execute (cmd)
- if len (lines) != 0:
- doxygen_input = doxygen_input + ' ' + d
- break
-
-# when the input is empty we must stop before doxygen is run to avoid generating an error
-if doxygen_input == '':
- print 'Empty input for Doxygen'
- exit
-
-print 'input for Doxygen = ' + doxygen_input
-
-# Operations will now occur from the ../doc directory
-os.chdir ('../doc')
-
-package_version = cmt.macros['version']
-package_svnpath = 'https://svnweb.cern.ch/trac/atlasoff/browser'+ package_root.replace(package_cmtpath,'') + '/tags/' + package_version
-
-# copy new header into package doc (so it will be processed by Doxygen) - still need to insert SVN link
-if writeHTML:
- # print 'Copying Layout XML, and adding SVN tab'
- f = open (DoxygenRoot + '/cmt/DoxygenLayout.xml')
- lines = f.readlines ()
- f.close ()
- g = open ('DoxygenLayout.xml', 'w')
- #print "Going over HTML lines:"
- for line in lines:
- # print line
- # Insert the link to SVN
- if '<!-- SVNLINK -->' in line:
- g.write ('<tab type="user" visible="yes" url="'+ package_svnpath +'" title="SVN"/>')
- g.write (line)
- g.close ()
-
-filter_doxyfile (doxygen_input, output+'/'+package, tagfiles, package_tagfile)
-
-# # End here for debugging
-# import sys
-# sys.exit()
-
-if writeHTML:
- #----------------------------------------------------
- # Constructing used_packages.html
- #
- # We have to guess where documentation of used packages are installed
- #
- f = open ('used_packages.html', 'w')
- f.write ('<center><table border="1"><tr><td><center><i><b>Used packages</b></i></center></td></tr>\n')
- for u in string.split (used_packages):
- p = os.path.basename (u)
- output = build_output_dir (p)
- r = output + '/'+p
- t = os.path.normpath (output + '/' + p + '.tag')
- if os.path.isfile (t): # Tag file exists
- for m in html_mapping:
- r = string.replace (r, os.path.normpath(m[0]), m[1])
- r = string.replace (r, '\\', '/')
- f.write ('<tr><td><a href="' + r + '/html/index.html">' + u + '</a></td></tr>\n')
- else: # Package does not exist
- f.write ('<tr><td>' + u + '</td></tr>\n')
- # if os.path.isfile (t)
- # for u in string.split (used_packages)
-
- f.write ('</table></center>\n')
- f.close ()
-
-#----------------------------------------------------
-# Running doxygen
-print 'Current location = ' + os.getcwd()
-print 'Now running doxygen with PATH= \n' + cmt.macro_value ('PATH')
-
-os.putenv ('PATH', cmt.macro_value ('PATH'))
-
-status, text, error, pythonError = exeCommand('doxygen')
-#status, text = commands.getstatusoutput('doxygen')
-#show_lines (string.split (text, '\n'))
-#print status
-
-# FIXME! Disabling this for the moment - not really sure what it's supposed to do...
-#relocate (output, tagfiles, html_mapping)
-
-# Below doesn't work
-# parse_html(package_html_path,'<li>\n *<form action="search.php" method="get">',
-# '<li><a href="' + package_svnpath + '"><span>SVN</span></a></li>\n <li>\n <form action="search.php" method="get">')
diff --git a/Tools/AtlasDoxygen/hscript.py b/Tools/AtlasDoxygen/hscript.py
deleted file mode 100644
index 0e5c11fc6e3f1e413a351c7f435481f8077916ba..0000000000000000000000000000000000000000
--- a/Tools/AtlasDoxygen/hscript.py
+++ /dev/null
@@ -1,162 +0,0 @@
-# Copyright (C) 2002-2017 CERN for the benefit of the ATLAS collaboration
-
-## -*- python -*-
-
-## waf imports
-import waflib.Logs as msg
-
-PACKAGE = {
- "name": "Tools/AtlasDoxygen",
- "authors": ["ATLAS Collaboration"],
-}
-
-### ---------------------------------------------------------------------------
-def pkg_deps(ctx):
-
- ## public dependencies
- ctx.use_pkg("LCG_Settings", version="*", public=True)
- ctx.use_pkg("LCG_Configuration", version="*", public=True)
- return # pkg_deps
-
-
-### ---------------------------------------------------------------------------
-def options(ctx):
-
- return # options
-
-
-### ---------------------------------------------------------------------------
-def configure(ctx):
-
-
-
- ctx.hwaf_path_remove("DOTFONTPATH", (
- {"default": ""},
- {("Linux", "Doxygen"): "AtlasDoxygen"},
- ))
-
- ## FIXME: implement a real waf-feature to do doxygen documentation
-
- ## FIXME: install fonts/ttf under INSTALL_AREA and use that instead of AtlasDoxygen_root
- ctx.hwaf_path_prepend("DOTFONTPATH", (
- {"default": ""},
- {("Linux", "Doxygen"): "${AtlasDoxygen_root}/fonts/ttf"},
- ))
-
- ctx.hwaf_declare_macro("AtlasDoxygen_native_version", (
- {"default": ""},
- {"Doxygen": "1.5.9"},
- ))
-
- ctx.hwaf_path_remove("PATH", (
- {"default": ""},
- {"Doxygen": "/doxygen/"},
- ))
-
- ctx.hwaf_path_prepend("PATH", (
- {"default": ""},
- {"Doxygen": "${LCG_external}/doxygen/${AtlasDoxygen_native_version}/${LCG_system}/bin"},
- ))
-
- ctx.hwaf_declare_macro("graphviz_native_version", (
- {"default": ""},
- {"Doxygen": "2.24.0"},
- ))
-
- ctx.hwaf_path_remove("PATH", (
- {"default": ""},
- {"Doxygen": "/graphviz/"},
- ))
-
- ctx.hwaf_path_prepend("PATH", (
- {"default": ""},
- {"Doxygen": "${LCG_external}/graphviz/${graphviz_native_version}/${LCG_system}/bin"},
- ))
-
- ctx.hwaf_macro_append("DOXYGEN_HTML_MAPPING", (
- {"default": ""},
- {("Doxygen", "local"): "/build/atlas/software/builds/@http://cern.ch/atlas-computing/links/buildDirectory"},
- {("Doxygen", "nightly"): "/build/atnight/localbuilds/nightlies/projects/@http://cern.ch/atlas-computing/links/buildDirectory/nightlies/dev"},
- {("Doxygen", "nightlyBUG"): "/build/atnight/localbuilds/nightlies/projects/@http://cern.ch/atlas-computing/links/buildDirectory/nightlies/bugfix"},
- {("Doxygen", "nightlyAFS"): "/afs/cern.ch/atlas/software/builds/nightlies/dev/@http://cern.ch/atlas-computing/links/buildDirectory/nightlies/dev"},
- {"Doxygen": "/afs/cern.ch/atlas/software/builds/@http://cern.ch/atlas-computing/links/buildDirectory"},
- ))
-
- ctx.hwaf_macro_append("DOXYGEN_STRIP_FROM_PATH", (
- {"default": ""},
- {("Doxygen", "local"): "/afs/cern.ch/atlas/software/builds/"},
- {("Doxygen", "nightly"): "/afs/cern.ch/atlas/software/builds/nightlies/dev/"},
- ))
-
- ctx.hwaf_declare_macro("DOXYGEN_COMMON_OUTPUT_DIRECTORY", (
- {"default": ""},
- {"Doxygen": "${DOXYGEN_OUTPUT}"},
- ))
-
- ctx.hwaf_declare_macro("DOXYGEN_INPUT", (
- {"default": ""},
- {"Doxygen": ["../src", "../${package}", "../doc", "../share", "../python", "../cmt/fragments"]},
- ))
- #### macro &{{DOXYGEN_FILE_PATTERNS [{default []} {Doxygen [*.cxx *.h *.py *.mk *.icc]}]}}
- ctx.hwaf_declare_macro("DOXYGEN_FILE_PATTERNS", (
- {"default": ""},
- {"Doxygen": ["*.cxx", "*.h", "*.py", "*.mk", "*.icc"]},
- ))
- #### macro &{{DOXYGEN_EXCLUDE [{default []} {Doxygen []}]}}
- ctx.hwaf_declare_macro("DOXYGEN_EXCLUDE", (
- {"default": ""},
- {"Doxygen": ""},
- ))
- #### macro &{{DOXYGEN_EXCLUDE_PATTERNS [{default []} {Doxygen []}]}}
- ctx.hwaf_declare_macro("DOXYGEN_EXCLUDE_PATTERNS", (
- {"default": ""},
- {"Doxygen": ""},
- ))
- #### macro &{{DOXYGEN_EXAMPLE_PATH [{default []} {Doxygen [../doc ../cmt ../share]}]}}
- ctx.hwaf_declare_macro("DOXYGEN_EXAMPLE_PATH", (
- {"default": ""},
- {"Doxygen": ["../doc", "../cmt", "../share"]},
- ))
- #### macro &{{DOXYGEN_EXAMPLE_PATTERNS [{default []} {Doxygen [*.cxx *.html requirements *.py]}]}}
- ctx.hwaf_declare_macro("DOXYGEN_EXAMPLE_PATTERNS", (
- {"default": ""},
- {"Doxygen": ["*.cxx", "*.html", "requirements", "*.py"]},
- ))
- #### macro &{{DOXYGEN_SORT_MEMBER_DOCS [{default []} {Doxygen [NO]}]}}
- ctx.hwaf_declare_macro("DOXYGEN_SORT_MEMBER_DOCS", (
- {"default": ""},
- {"Doxygen": "NO"},
- ))
- #### macro &{{DOXYGEN_INLINE_INHERITED_MEMB [{default []} {Doxygen [YES]}]}}
- ctx.hwaf_declare_macro("DOXYGEN_INLINE_INHERITED_MEMB", (
- {"default": ""},
- {"Doxygen": "YES"},
- ))
- #### macro &{{DOXYGEN_IMAGE_PATH [{default []}]}}
- ctx.hwaf_declare_macro("DOXYGEN_IMAGE_PATH", (
- {"default": ""},
- ))
- #### macro &{{DOXYGEN_UML_LOOK [{default []} {Doxygen [YES]}]}}
- ctx.hwaf_declare_macro("DOXYGEN_UML_LOOK", (
- {"default": ""},
- {"Doxygen": "YES"},
- ))
- #### macro &{{DOXYGEN_QT_AUTOBRIEF [{default []} {Doxygen [YES]}]}}
- ctx.hwaf_declare_macro("DOXYGEN_QT_AUTOBRIEF", (
- {"default": ""},
- {"Doxygen": "YES"},
- ))
-
- ctx.hwaf_declare_macro("DOXYGEN_JAVADOC_AUTOBRIEF", (
- {"default": ""},
- {"Doxygen": "YES"},
- ))
-
- return # configure
-
-
-### ---------------------------------------------------------------------------
-def build(ctx):
- return # build
-
-## EOF ##
diff --git a/Tools/AtlasDoxygen/scripts/BeginFragment b/Tools/AtlasDoxygen/scripts/BeginFragment
deleted file mode 100755
index 6bdb94ef0d974d9157815ce04806fc3e1b0490bf..0000000000000000000000000000000000000000
--- a/Tools/AtlasDoxygen/scripts/BeginFragment
+++ /dev/null
@@ -1,6 +0,0 @@
-<html><head><meta http-equiv="Content-Type" content="text/html;charset=iso-8859-1">
-<title>Summary of Classes</title>
-<link href="doxygen.css" rel="stylesheet" type="text/css">
-<link href="tabs.css" rel="stylesheet" type="text/css">
-</head><body>
-<h1>Summary of Classes</h1>
diff --git a/Tools/AtlasDoxygen/scripts/EndFragment b/Tools/AtlasDoxygen/scripts/EndFragment
deleted file mode 100755
index 308b1d01b6ca1e7ab1b1fa896e6a8497bbcd1a37..0000000000000000000000000000000000000000
--- a/Tools/AtlasDoxygen/scripts/EndFragment
+++ /dev/null
@@ -1,2 +0,0 @@
-</body>
-</html>
diff --git a/Tools/AtlasDoxygen/scripts/MakeDoxygenClassSum.sh b/Tools/AtlasDoxygen/scripts/MakeDoxygenClassSum.sh
deleted file mode 100755
index 9d210358b31548641e6fbd01a053ed0a1ff0b354..0000000000000000000000000000000000000000
--- a/Tools/AtlasDoxygen/scripts/MakeDoxygenClassSum.sh
+++ /dev/null
@@ -1,77 +0,0 @@
-#!/bin/sh
-# ==================================================================================================================================#
-# #
-# MakeDoxygenClassSum -r <release> #
-# #
-# Unix script to create Doxygen summary for every class which has XML output already produced. #
-# The script uses the information already created by doxygen in the AFSDOXYGENPATH. #
-# It operates on the packages described in XMLList.txt file #
-# #
-# Options: #
-# -r|--release <rel> Nightly or build release. #
-# -a|--afspath AFSDOXYGENPATH AFS location where the doxygen is located. #
-# By default for nightly it is #
-# /afs/cern.ch/atlas/software/builds/nightlies/dev/AtlasOffline/<rel>/InstallArea/doc/ #
-# for build releases it is #
-# /afs/cern.ch/atlas/software/builds/AtlasOffline/<rel>/InstallArea/doc/ #
-# #
-#####################################################################################################################################
-
-function show_help() {
- echo "Usage: ${script} -r <rel> [-a <AFSDOXYGENPATH> ]"
- echo " Options:"
- echo " -r|--release : rel Nightly or build release."
- echo " -a|--afspath : AFSDOXYTAGPATH AFS location where the doxygen is located. "
- echo
-}
-
-script=`basename $0`
-rel=
-AFSDOXYGENPATH=
-# --- Input parameters
-
-if [ $# = 0 ]; then
- show_help;exit 1
-fi
-
-while [ $# -ne 0 ]; do
-
- case $1 in
- -r | --release) rel=$2; shift;;
- -a | --afspath) AFSDOXYGENPATH=$2; shift;;
- -* | --*) show_help; exit 1;;
-
- esac
- shift
-done
-
-if [ `echo $rel | awk '{print substr($1,1,4)}'` == "rel_" ]; then
- # locations of the nightly
- if [ -z "$AFSDOXYGENPATH" ]; then
- AFSDOXYGENPATH="/afs/cern.ch/atlas/software/builds/nightlies/dev/AtlasOffline/$rel/InstallArea/doc"
- fi
-else
- # locations of the build release
- if [ -z "$AFSDOXYGENPATH" ]; then
- AFSDOXYGENPATH="/afs/cern.ch/atlas/software/builds/AtlasOffline/$rel/InstallArea/doc"
- fi
-
-fi
-
-if [ ! -d "$AFSDOXYGENPATH" ]; then
- echo "Directory $AFSDOXYGENPATH does not exist "
- exit 1
-fi
-
-
-OUTPUTPATH=${AFSDOXYGENPATH}/Summaries
-for PACKAGE in `grep -v '#' ../cmt/XMLList.txt`
-do
- mkdir -p ${OUTPUTPATH}/${PACKAGE}
- for CLASS in `ls --color=no ${AFSDOXYGENPATH}/${PACKAGE}/xml/class*xml`
- do
- CLASSBASE=`basename ${CLASS} .xml`
- echo "Processing $CLASSBASE and outputing in ${OUTPUTPATH}/${CLASSBASE}.html"
- xsltproc ./pageClassExtraction.xsl ${CLASS} > ${OUTPUTPATH}/${PACKAGE}/${CLASSBASE}.html
- done
-done
diff --git a/Tools/AtlasDoxygen/scripts/createDoxPage.sh b/Tools/AtlasDoxygen/scripts/createDoxPage.sh
deleted file mode 100755
index 3d245fc3ec344d04e25809ca32aadead74ae4ff1..0000000000000000000000000000000000000000
--- a/Tools/AtlasDoxygen/scripts/createDoxPage.sh
+++ /dev/null
@@ -1,112 +0,0 @@
-#!/bin/sh
-# ==================================================================================================================================#
-# #
-# createDoxPage -d <DOXYTAGPATH> -a <AFSDOXYTAGPATH> #
-# #
-# Unix script to create one summary Doxygen web page for all packages. #
-# The script uses the information already created by doxygen in the AFSDOXYTAGPATH. #
-# #
-# Options: #
-# -r|--release <rel> Nightly or build release. #
-# -d|--doxpath DOXYTAGPATH Http location where the doxygen is located. #
-# By default for nightly it is #
-# http://atlas-computing.web.cern.ch/atlas-computing/links/nightlyDevDirectory/AtlasOffline/<rel>/InstallArea/doc/ #
-# for build releases it is #
-# http://atlas-computing.web.cern.ch/atlas-computing/links/buildDirectory/AtlasOffline/<rel>/InstallArea/doc/ #
-# -a|--afspath AFSDOXYTAGPATH AFS location where the doxygen is located. #
-# By default for nightly it is #
-# /afs/cern.ch/atlas/software/builds/nightlies/dev/AtlasOffline/<rel>/InstallArea/doc/ #
-# for build releases it is #
-# /afs/cern.ch/atlas/software/builds/AtlasOffline/<rel>/InstallArea/doc/ #
-# #
-#####################################################################################################################################
-
-function show_help() {
- echo "Usage: ${script} -r <rel> [-d <DOXYTAGPATH> -a <AFSDOXYTAGPATH>]"
- echo " Options:"
- echo " -r|--release rel Nightly or build release."
- echo " -d|--doxpath DOXYTAGPATH Http location where the doxygen is located."
- echo " -a|--afspath AFSDOXYTAGPATH AFS location where the doxygen is located. "
- echo
-}
-
-script=`basename $0`
-rel=
-DOXYTAGPATH=
-AFSDOXYTAGPATH=
-# --- Input parameters
-
-if [ $# = 0 ]; then
- show_help;exit 1
-fi
-
-
-while [ $# -ne 0 ]; do
-
- case $1 in
- -r | --release) rel=$2; shift;;
- -d | --doxpath) DOXYTAGPATH=$2; shift;;
- -a | --afspath) AFSDOXYTAGPATH=$2; shift;;
- -* | --*) show_help; exit 1;;
-
- esac
- shift
-done
-
-if [ -z "$rel" ]; then
- echo "Please specify nightly or build release with -r option."
- exit 1
-fi
-
-if [ `echo $rel | awk '{print substr($1,1,4)}'` == "rel_" ]; then
- # locations of the nightly
- if [ -z "$DOXYTAGPATH" ]; then
- DOXYTAGPATH="http://atlas-computing.web.cern.ch/atlas-computing/links/nightlyDevDirectory/AtlasOffline/$rel/InstallArea/doc/"
- fi
- if [ -z "$AFSDOXYTAGPATH" ]; then
- AFSDOXYTAGPATH="/afs/cern.ch/atlas/software/builds/nightlies/dev/AtlasOffline/$rel/InstallArea/doc/"
- fi
-else
- # locations of the build release
- if [ -z "$DOXYTAGPATH" ]; then
- DOXYTAGPATH="http://atlas-computing.web.cern.ch/atlas-computing/links/buildDirectory/AtlasOffline/$rel/InstallArea/doc/"
- fi
- if [ -z "$AFSDOXYTAGPATH" ]; then
- AFSDOXYTAGPATH="/afs/cern.ch/atlas/software/builds/AtlasOffline/$rel/InstallArea/doc/"
- fi
-
-fi
-
-if [ ! -d "$AFSDOXYTAGPATH" ]; then
- echo "Directory $AFSDOXYTAGPATH does not exist "
- exit 1
-fi
-
-
-TEMPATH=`pwd`
-
-cd ${AFSDOXYTAGPATH}
-cat $TEMPATH/BeginFragment > allpackages.html
-for TAG in `ls --color=no *.tag`
-do
- PACKAGENAME=`basename ${TAG} .tag`
- xsltproc --stringparam path "${PACKAGENAME}/html/" --stringparam packageName "$PACKAGENAME" $TEMPATH/pageExtraction.xsl "$TAG" >> allpackages.html
- RETVALUE="$?"
- if [ "${RETVALUE}" = "6" ] ;
- then echo "<h3> $PACKAGENAME </h3> \n <small><ul><li>Xsltproc returned ${RETVALUE} - tag file corrupted?</li> </ul></small>" >>allpackages.html ;
- fi
- echo "Returned : \t${RETVALUE} after processing ${PACKAGENAME}"
-
-done
-echo '<hr size="1"><small>Doxygen tag merging done by Edward Moyse and Shaun Roe. This file was generated on ' >> allpackages.html
-date >> allpackages.html
-echo '</small>' >> allpackages.html
-cat $TEMPATH/EndFragment >> allpackages.html
-
-if [ ! -f "allpackages.html" ]; then
- echo "Problem: File allpackages.html not created"
- exit 1
-else
- echo "Done "`pwd`"/allpackages.html"
- exit 0
-fi
diff --git a/Tools/AtlasDoxygen/scripts/globalDoxySearch.php b/Tools/AtlasDoxygen/scripts/globalDoxySearch.php
deleted file mode 100644
index cdf1c6abd4d6dcf83db044383d10476aaf9abc7e..0000000000000000000000000000000000000000
--- a/Tools/AtlasDoxygen/scripts/globalDoxySearch.php
+++ /dev/null
@@ -1,595 +0,0 @@
-<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
-<html><head><meta http-equiv="Content-Type" content="text/html;charset=UTF-8">
-<title>Doxygen Global Search</title>
-<script type="text/javascript">
-function toggleBox(szDivID, iState) // 1 visible, 0 hidden
-{
- var obj = document.layers ? document.layers[szDivID] :
- document.getElementById ? document.getElementById(szDivID).style :
- document.all[szDivID].style;
-
- obj.visibility = document.layers ? ( (obj.visibility == "show") ? "hide":"show" ) : ( (obj.visibility == "visible") ? "hidden":"visible" );
-}
-</script>
-<style type="text/css">
-.hidden {color:#909090;
- position:absolute;
- top:35px;
- left:73%;
- width:300px;
- height:100%;
- z-index:99;
- visibility:hidden;
- font-size:11px;
-}
-.help {color:#909090;
- font-size:11px;
-}
-
-</style>
-
-<link href="AtlasAnalysisRelease/html/doxygen.css" rel="stylesheet" type="text/css">
-<link href="AtlasAnalysisRelease/html/tabs.css" rel="stylesheet" type="text/css">
-
-</head><body>
-<?php
-echo "<p style='text-align: right;'><a href=\"#\" onclick=\"toggleBox('help',1);\"></a>
-<small><FONT COLOR=BBBBBB><i>Search index generated on ".date("D M d H:i:s Y.",filemtime('globsearch.idx'))."</i></FONT></small></address>\n";
-?>
-
-<h1><FONT COLOR=#BB3333>Doxygen Global Search</FONT></h1>
-
-<form action="globalDoxySearch.php" method="get">
- <table cellspacing="0" cellpadding="0" border="0" width=100%>
- <tr>
- <td width=20%></td>
- <td align=right><label><FONT SIZE=+1> S<u>e</u>arch for </FONT></label>
- </td>
-
-<?php set_time_limit(0);
-
-function search_results()
-{
- return "Search Results";
-}
-
-function matches_text($num)
-{
- if ($num==0)
- {
- return "Sorry, no documents matching your query.";
- }
- else if ($num==1)
- {
- return "Found <b>1</b> document matching your query.";
- }
- else // $num>1
- {
- return "Found <b>$num</b> documents matching your query. Showing best matches first.";
- }
-}
-
-function report_matches()
-{
- return "Matches: ";
-}
-function end_form($value,$case,$whole,$filters)
-{
- $cacheck=$case?"checked":"";
- $wcheck=$whole?"checked":"";
- $pcheck=$filters["package"]?"checked":"";
- $ccheck=$filters["class"]?"checked":"";
- $mcheck=$filters["method"]?"checked":"";
- $tcheck=$filters["title"]?"checked":"";
- echo "<td width=340><input type=\"text\" name=\"query\" value=\"$value\" size=\"40\" accesskey=\"e\"/>
- <input type=submit accesskey=\"a\" value=\"Search\"> </td>
- <td width=15%><!--<B>Filters:</B><BR>-->
- <input type=checkbox name=fpackage accesskey=P $pcheck><u>P</u>ackage only<BR>
- <input type=checkbox name=fclass accesskey=C $ccheck><u>C</u>lass only<BR>
- <input type=checkbox name=fmethod accesskey=M $mcheck><u>M</u>ethod/Attribute only<BR>
- <input type=checkbox name=ftitle accesskey=T $tcheck>Search <u>T</u>itles only<BR>
- <input type=checkbox name=matchwholeword accesskey=W $wcheck>Match <u>w</u>hole word
- <!--<input type=checkbox name=casesensitive accesskey= $cacheck><u>C</u>ase Sensitive-->
- </td>
- <td width=20%><table><tr>
- <td class=help>
- <LI>Search is <b>not</b> case sensitive.
- <LI>Wildecards/Regular Expressions <b>not allowed</b>.
- <LI>Multiple terms will search for either of the terms (OR).
- <LI>Search filters are cumulative (\"Package only\" & \"Class only\" will give both).
- </td>
- </tr></table>\n
- </td>
- </tr>
-</table>\n </form>\n
-
-
-";
-}
-
-function readInt($file)
-{
- $b1 = ord(fgetc($file)); $b2 = ord(fgetc($file));
- $b3 = ord(fgetc($file)); $b4 = ord(fgetc($file));
- return ($b1<<24)|($b2<<16)|($b3<<8)|$b4;
-}
-
-function readString($file)
-{
- $result="";
- while (ord($c=fgetc($file))) $result.=$c;
- return $result;
-}
-
-function readHeader($file)
-{
- $header =fgetc($file); $header.=fgetc($file);
- $header.=fgetc($file); $header.=fgetc($file);
- return $header;
-}
-
-function computeIndex($word)
-{
- // Fast string hashing
- //$lword = strtolower($word);
- //$l = strlen($lword);
- //for ($i=0;$i<$l;$i++)
- //{
- // $c = ord($lword{$i});
- // $v = (($v & 0xfc00) ^ ($v << 6) ^ $c) & 0xffff;
- //}
- //return $v;
-
- // Simple hashing that allows for substring search
- if (strlen($word)<2) return -1;
- // high char of the index
- $hi = ord($word{0});
- if ($hi==0) return -1;
- // low char of the index
- $lo = ord($word{1});
- if ($lo==0) return -1;
- // return index
- return $hi*256+$lo;
-}
-
-function printIndex($file)
-{
- $count=0;
- for ($index = 0; $index<256*256; $index++)
- {
- fseek($file, $index*4+4);
- $idx = readInt($file);
-
-// echo "<FONT COLOR=RED><B>index=</B>$index <B>idx</B>=$idx</FONT><BR>";
- if ($idx)
- {
- echo "<FONT COLOR=RED>idx=$idx</FONT><BR>";
- fseek($file,$idx);
- $w = readString($file);
- while ($w)
- {
- $statIdx = readInt($file);
- $statsList[$count++]=array(
- "word"=>$word,
- "match"=>$w,
- "index"=>$statIdx,
- "full"=>strlen($w)==strlen($word),
- "docs"=>array()
- );
- echo "w=$w statIdex=$statIdx<BR>";
- $w = readString($file);
- }
- }
- }
-
- for ($count=0;$count<sizeof($statsList);$count++)
- {
- $statInfo = &$statsList[$count];
- fseek($file,$statInfo["index"]);
- $numDocs = readInt($file);
- $docInfo = array();
- echo "<FONT COLOR=GREEN>";
-// echo "<B>word=</B>",$statInfo["word"], " ";
- echo "<B>w=</B>", $statInfo["match"], " ";
- echo "<B>statIdex=</B>", $statInfo["index"], " ";
- echo "<B>numDocs=</B>$numDocs";
- echo "</FONT><BR>";
- // read docs info + occurrence frequency of the word
- for ($i=0;$i<$numDocs;$i++)
- {
- $docidx=readInt($file);
- $freq=readInt($file);
- $docInfo[$i]=array("idx" => $docidx,
- "freq" => $freq>>1,
- "rank" => 0.0,
- "hi" => $freq&1
- );
- }
- // read name and url info for the doc
- echo "<TABLE BORDER=1>";
- for ($i=0;$i<$numDocs;$i++)
- {
- fseek($file,$docInfo[$i]["idx"]);
- $docInfo[$i]["name"]=readString($file);
- $docInfo[$i]["url"]=readString($file);
- echo "<TR>";
- echo "<TD><FONT COLOR=BLUE>", $docInfo[$i]["name"], "</FONT></TD>";
- echo "<TD><FONT COLOR=BLUE>", $docInfo[$i]["url"], "</FONT></TD>";
- echo "<TD><FONT COLOR=BLUE>", $docInfo[$i]["freq"], "</FONT></TD>";
- echo "<TD><FONT COLOR=BLUE>", $docInfo[$i]["hi"], "</FONT></TD>";
- echo "</TR>";
- }
- echo "</TABLE>";
- $statInfo["docs"]=$docInfo;
- }
-}
-
-
-function search($file,$word,$whole,&$statsList)
-{
- $index = computeIndex($word);
- if ($index!=-1) // found a valid index
- {
- fseek($file,$index*4+4); // 4 bytes per entry, skip header
- $index = readInt($file);
-
- if ($index) // found words matching the hash key
- {
- $start=sizeof($statsList);
- $count=$start;
- fseek($file,$index);
- $w = readString($file);
- while ($w)
- {
- $statIdx = readInt($file);
-// $statIdxHex=dechex( $statIdx );
-// $match = preg_match("($word)",$w,$matches);
- $match=($whole)?($word==$w):($word==substr($w,0,strlen($word)));
- if ($match)
- { // found word that matches (as substring)
- $statsList[$count++]=array(
- "word"=>$word,
- "match"=>$w,
- "index"=>$statIdx,
- "full"=>strlen($w)==strlen($word),
- "docs"=>array()
- );
-// echo "<FONT SIZE=+2 COLOR=RED>FOUND MATCH!</FONT><BR>";
-// echo "w=$w statIdex=$statIdx (0x$statIdxHex)<BR>";
- }
- $w = readString($file);
- }
- $totalHi=0;
- $totalFreqHi=0;
- $totalFreqLo=0;
- for ($count=$start;$count<sizeof($statsList);$count++)
- {
- $statInfo = &$statsList[$count];
- $multiplier = 1;
- // whole word matches have a double weight
- if ($statInfo["full"]) $multiplier=2;
- fseek($file,$statInfo["index"]);
- $numDocs = readInt($file);
-// $numDocsHex=dechex($numDocs);
-// echo "numDocs=$numDocs ( 0x$numDocsHex )";
- $docInfo = array();
- // read docs info + occurrence frequency of the word
- for ($i=0;$i<$numDocs;$i++)
- {
- $idx=readInt($file);
- $freq=readInt($file);
- $docInfo[$i]=array("idx" => $idx,
- "freq" => $freq>>1,
- "rank" => 0.0,
- "hi" => $freq&1
- );
- if ($freq&1) // word occurs in high priority doc
- {
- $totalHi++;
- $totalFreqHi+=$freq*$multiplier;
- }
- else // word occurs in low priority doc
- {
- $totalFreqLo+=$freq*$multiplier;
- }
- }
- // read name and url info for the doc
- for ($i=0;$i<$numDocs;$i++)
- {
- fseek($file,$docInfo[$i]["idx"]);
- $docInfo[$i]["name"]=readString($file);
- $docInfo[$i]["url"]=readString($file);
- }
- $statInfo["docs"]=$docInfo;
- }
- $totalFreq=($totalHi+1)*$totalFreqLo + $totalFreqHi;
- for ($count=$start;$count<sizeof($statsList);$count++)
- {
- $statInfo = &$statsList[$count];
- $multiplier = 1;
- // whole word matches have a double weight
- if ($statInfo["full"]) $multiplier=2;
- for ($i=0;$i<sizeof($statInfo["docs"]);$i++)
- {
- $docInfo = &$statInfo["docs"];
- // compute frequency rank of the word in each doc
- $freq=$docInfo[$i]["freq"];
- if ($docInfo[$i]["hi"])
- {
- $statInfo["docs"][$i]["rank"]=
- (float)($freq*$multiplier+$totalFreqLo)/$totalFreq;
- }
- else
- {
- $statInfo["docs"][$i]["rank"]=
- (float)($freq*$multiplier)/$totalFreq;
- }
- }
- }
- }
- }
- return $statsList;
-}
-
-function combine_results($results,&$docs)
-{
- foreach ($results as $wordInfo)
- {
- $docsList = &$wordInfo["docs"];
- foreach ($docsList as $di)
- {
- $key=$di["url"];
- $rank=$di["rank"];
- $freq=$di["freq"];
- if (in_array($key, array_keys($docs)))
- {
- $docs[$key]["rank"]+=$rank;
- }
- else
- {
- $docs[$key] = array("url"=>$key,
- "name"=>$di["name"],
- "rank"=>$rank,
- );
- }
- $docs[$key]["words"][] = array(
- "word"=>$wordInfo["word"],
- "match"=>$wordInfo["match"],
- "freq"=>$di["freq"],
- "hi"=>$di["hi"]
- );
- }
- }
- return $docs;
-}
-
-function filter_results($docs,&$requiredWords,&$forbiddenWords,&$filters)
-{
- $filteredDocs=array();
- while (list ($key, $val) = each ($docs))
- {
- $words = &$docs[$key]["words"];
- $copy=1; // copy entry by default
- if (sizeof($requiredWords)>0)
- {
- foreach ($requiredWords as $reqWord)
- {
- $found=0;
- foreach ($words as $wordInfo)
- {
- $found = $wordInfo["word"]==$reqWord;
- if ($found) break;
- }
- if (!$found)
- {
- $copy=0; // document contains none of the required words
- break;
- }
- }
- }
- if (sizeof($forbiddenWords)>0)
- {
- foreach ($words as $wordInfo)
- {
- if (in_array($wordInfo["word"],$forbiddenWords))
- {
- $copy=0; // document contains a forbidden word
- break;
- }
- }
- }
- //// THIS PART ADDED 20080311 :
- $copy2=1; //Copy by default unless a filter is active
- if ($filters["package"] || $filters["class"] || $filters["method"] || $filters["title"])
- {
- $copy2= 0;
- $url = &$docs[$key]["url"]; //The url for this document
- $name = strtolower($docs[$key]["name"]); //The name of this url
- $word = &$docs[$key]["words"][0]["word"]; //The word that was searched for
- if ($filters["package"] && preg_match("/\/html\/index\.html$/",$url))
- $copy2=1; // document is a package
- //if ($filters["class"] && ! preg_match("/Class Reference$/",$name))
- if ($filters["class"] && preg_match("/\html\/class.*\.html$/",$url))
- $copy2=1; //document is a class
- if ($filters["method"] && strpos($name,"::".$word)!==FALSE)//!== is the right form
- $copy2=1; //document is a method or attribute
- if ($filters["title"] && strpos($name,$word)!==FALSE)//!== is the right form
- $copy2=1; //document is a method or attribute
- }
- //// END ADDED PART
- if ($copy && $copy2) $filteredDocs[$key]=$docs[$key];
- }
- return $filteredDocs;
-}
-
-function compare_rank($a,$b)
-{
- if ($a["rank"] == $b["rank"])
- {
- return 0;
- }
- return ($a["rank"]>$b["rank"]) ? -1 : 1;
-}
-
-function sort_results($docs,&$sorted)
-{
- $sorted = $docs;
- usort($sorted,"compare_rank");
- return $sorted;
-}
-
-function report_results(&$docs, $time)
-{
- $runPath=getcwd();
- $initURL=(strpos($runPath,"/nir/"))?"http://atlas-computing.web.cern.ch/atlas-computing/links/nightlyDocDirectory/":"";
- echo "<TABLE BORDER=0 cellpadding=0 cellspacing=0 width=100% STYLE=\"border-top:1px solid #36c;background:#d5ddf3;color:#000;padding:5px 1px 4px\">";
- echo "<TR>\n";
- echo " <TD><H2>".search_results()."</td>\n";
- printf(" <TD ALIGN=RIGHT NOWRAP>%1.2f Seconds</TD>\n",$time);
- echo "</TR></TABLE>\n";
-
- echo "<table cellspacing=\"2\">\n";
-// echo " <tr>\n";
-// echo " <td colspan=\"2\"><h2>".search_results()."</h2></td>\n";
-// echo " </tr>\n";
- $numDocs = sizeof($docs);
- if ($numDocs==0)
- {
- echo " <tr>\n";
- echo " <td colspan=\"2\">".matches_text(0)."</td>\n";
- echo " </tr>\n";
- }
- else
- {
- echo " <tr>\n";
- echo " <td colspan=\"2\">".matches_text($numDocs);
- echo "\n";
- echo " </td>\n";
- echo " </tr>\n";
- $num=1;
- foreach ($docs as $doc)
- {
- if (!strcmp($doc["name"],"Page index")){//Add the package name to any URL whose name is "Page index"
- $pos = strpos($doc["url"],"/",0);
- $package_name = substr($doc["url"],0,$pos);
- $doc["name"]="$package_name " . $doc["name"];
- }
- echo " <tr>\n";
- echo " <td align=\"right\">$num.</td>";
- echo "<td><a class=\"el\" href=\"".$initURL.$doc["url"]."\">".$doc["name"]."</a></td>\n";
- echo " <tr>\n";
- echo " <td></td><td class=\"tiny\">".report_matches()." ";
- foreach ($doc["words"] as $wordInfo)
- {
- $word = $wordInfo["word"];
- $matchRight = substr($wordInfo["match"],strlen($word));
- echo "<b><font color=red>$word</font></b>$matchRight(" . $wordInfo["freq"];
- if ($wordInfo["hi"]) echo "<font color=blue><b>♦</b></font>";
- echo ")\n";
- // break; //Check why so many identical words!
- }
- echo " </td>\n";
- echo " </tr>\n";
- $num++;
- }
- }
- echo "</table>\n";
-}
-
-function microtime_float()
-{
- list($usec, $sec) = explode(" ", microtime());
- return ((float)$usec + (float)$sec);
-}
-
-
-function main()
-{
- if(strcmp('4.1.0', phpversion()) > 0)
- {
- die("Error: PHP version 4.1.0 or above required!");
- }
- if (!($file=fopen("globsearch.idx","rb")))
- {
- die("Error: Search index file could NOT be opened!");
- }
- if (readHeader($file)!="DOXS")
- {
- die("Error: Header of index file is invalid!");
- }
- $query="";
- $queryExists=0;
- $casesensitive=0;
- $matchwholeword=0;
- $filters=array(
- "package"=>0,
- "class"=>0,
- "method"=>0,
- "title"=>0,
- );
-
- if (array_key_exists("query", $_GET))
- {
- $query=$_GET["query"];
- $queryExists=1;
- }
- if (array_key_exists("matchwholeword", $_GET)){
- $matchwholeword=$_GET["matchwholeword"];
- }
- if (array_key_exists("fpackage", $_GET)){
- $filters["package"]=$_GET["fpackage"];
- }
- if (array_key_exists("fclass", $_GET)){
- $filters["class"]=$_GET["fclass"];
- }
- if (array_key_exists("fmethod", $_GET)){
- $filters["method"]=$_GET["fmethod"];
- }
- if (array_key_exists("ftitle", $_GET)){
- $filters["title"]=$_GET["ftitle"];
- }
- end_form($query,$casesensitive,$matchwholeword,$filters);
- echo " \n<div class=\"searchresults\">\n";
- $results = array();
- $requiredWords = array();
- $forbiddenWords = array();
- $foundWords = array();
- $word=strtok($query," ");
- // printIndex($file);
- $time_begin = microtime_float();
- while ($word) // for each word in the search query
- {
- if (($word{0}=='+')) { $word=substr($word,1); $requiredWords[]=$word; }
- if (($word{0}=='-')) { $word=substr($word,1); $forbiddenWords[]=$word; }
- if (!in_array($word,$foundWords))
- {
- $foundWords[]=$word;
- $searchword = ($casesensitive)?$word:strtolower($word);
- search($file,$searchword,$matchwholeword,$results);
- }
- $word=strtok(" ");
- }
- $docs = array();
- combine_results($results,$docs);
- // filter out documents with forbidden word or that do not contain
- // required words
- $filteredDocs = filter_results($docs,$requiredWords,$forbiddenWords,$filters);
- // sort the results based on rank
- $sorted = array();
- sort_results($filteredDocs,$sorted);
- // report results to the user
- $time_end = microtime_float();
- $time_exec = $time_end - $time_begin;
- if ($queryExists){
- report_results($sorted,$time_exec);
- }
- echo "</div>\n";
- fclose($file);
-}
-
-main();
-
-
-?>
-</body>
-</html>
diff --git a/Tools/AtlasDoxygen/scripts/pageClassExtraction.xsl b/Tools/AtlasDoxygen/scripts/pageClassExtraction.xsl
deleted file mode 100755
index acdc8d1c6f0a1737a5177900d12c649604477d44..0000000000000000000000000000000000000000
--- a/Tools/AtlasDoxygen/scripts/pageClassExtraction.xsl
+++ /dev/null
@@ -1,191 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<xsl:stylesheet xmlns:xsl="http://www.w3.org/1999/XSL/Transform" version="1.0">
- <xsl:output indent="yes" method="html"/>
- <!--Default to no output -->
- <xsl:template match="text()|@*"/>
- <!-- match to root element-->
- <xsl:template match="doxygen">
- <html>
- <head>
- <title>My test</title>
- <link href="doxygen.css" rel="stylesheet" type="text/css"></link>
- <link href="tabs.css" rel="stylesheet" type="text/css"></link>
- </head>
- <body>
-
- <table class="memname">
- <xsl:apply-templates/>
- </table>
-
- </body>
- </html>
- </xsl:template>
- <!-- match to compoundef, seems t be top element for class -->
- <xsl:template match="compounddef">
- <h2>
- <xsl:value-of select="compoundname"/>
- </h2>
-<!-- <xsl:value-of select="detaileddescription"/> -->
-
- <xsl:apply-templates/>
- </xsl:template>
- <!-- match to the public definitions section, the context is now 'compoundef' if called from above -->
- <xsl:template match="sectiondef[@kind='public-func']">
- <!-- now we are in sectiondef-->
- <!-- iterate over the members for which the 'kind' attribute = 'function' -->
-
- <!-- <xsl:for-each select="memberdef[(@kind='function' ) ]"> -->
- <xsl:variable name="ClassName">
- <xsl:value-of select="substring-after( ../compoundname, '::' )"/>
- </xsl:variable>
- <xsl:for-each select="memberdef[(@kind='function') and ( (name!=$ClassName) and not(starts-with(name, '~')) and not(starts-with(name, 'operator')) and not(starts-with(name, 'clone'))) ]">
- <tr>
- <td BGCOLOR="#EEF3F5">
- <b><xsl:value-of select="definition"/></b>
- <xsl:value-of select="argsstring"/> :
- </td>
- <td BGCOLOR="#F0F8FF">
- <xsl:value-of select="briefdescription"/>
- <!-- <xsl:value-of select="detaileddescription"/> -->
-
- <xsl:if test= "name='px'">
- Px
- </xsl:if>
- <xsl:if test= "name='py'">
- Py
- </xsl:if>
- <xsl:if test= "name='pz'">
- Pz
- </xsl:if>
- <xsl:if test= "name='m'">
- Mass
- </xsl:if>
- <xsl:if test= "name='m2'">
- Mass squared
- </xsl:if>
- <xsl:if test= "name='e'">
- Energy
- </xsl:if>
- <xsl:if test= "name='et'">
- Transverse energy
- </xsl:if>
- <xsl:if test= "name='rapidity'">
- Rapidity
- </xsl:if>
- <xsl:if test= "name='p'">
- Momentum
- </xsl:if>
- <xsl:if test= "name='p2'">
- Momentum squared
- </xsl:if>
- <xsl:if test= "name='eta'">
- Psuedo-rapidity
- </xsl:if>
- <xsl:if test= "name='phi'">
- Phi
- </xsl:if>
- <xsl:if test= "name='pt'">
- Transverse momentum
- </xsl:if>
- <xsl:if test= "name='iPt'">
- Inverse transverse momentum
- </xsl:if>
- <xsl:if test= "name='cosPhi'">
- Cosine phi
- </xsl:if>
- <xsl:if test= "name='sinPhi'">
- Sine phi
- </xsl:if>
- <xsl:if test= "name='sinTh'">
- Sine theta
- </xsl:if>
- <xsl:if test= "name='cosTh'">
- Cosine theta
- </xsl:if>
- <xsl:if test= "name='tanTh'">
- Tangent theta
- </xsl:if>
- <xsl:if test= "name='cotTh'">
- Cotangent theta
- </xsl:if>
- <xsl:if test= "name='hlv'">
- Lorentz Vector
- </xsl:if>
- <xsl:if test= "name='setIPt'">
- Set transverse momentum
- </xsl:if>
- <xsl:if test= "name='setCotTh'">
- Set cotangent theta
- </xsl:if>
- <xsl:if test= "name='setPhi'">
- Set phi
- </xsl:if>
- <xsl:if test= "name='setM'">
- Set mass
- </xsl:if>
- <xsl:if test= "name='setPx'">
- Set Px
- </xsl:if>
- <xsl:if test= "name='setPy'">
- Set Py
- </xsl:if>
- <xsl:if test= "name='setPz'">
- Set Pz
- </xsl:if>
- <xsl:if test= "name='setE'" >
- Set Energy
- </xsl:if>
- <xsl:if test= "name='pxi'">
- Px
- </xsl:if>
- <xsl:if test= "name='pyi'">
- Py
- </xsl:if>
- <xsl:if test= "name='pzi'">
- Pz
- </xsl:if>
- <xsl:if test= "name='ei'">
- Energy
- </xsl:if>
- <xsl:if test= "name='set4Mom'">
- Set four-momentum
- </xsl:if>
- <xsl:if test= "name='dump'">
- Output stream debubing information
- </xsl:if>
- <xsl:if test= "name='set_origin'">
- Assign vertex to particle
- </xsl:if>
- <xsl:if test= "name='set_charge'">
- Assign charge to particle
- </xsl:if>
- <xsl:if test= "name='set_dataType'">
- Assign data type to particle
- </xsl:if>
- <xsl:if test= "name='set_pdgId'">
- Assign particle id to particle
- </xsl:if>
- <xsl:if test= "name='dataType'">
- Data type: 0=data,1=full simulation,2=fast shower, 3= fast simulation,4= Monte Carlo truth
- </xsl:if>
- <xsl:if test= "name='origin'">
- RecVertex corresponding to particle Origin
- </xsl:if>
- <xsl:if test= "name='hasCharge'">
- Check if charge information is available
- </xsl:if>
- <xsl:if test= "name='charge'">
- Charge
- </xsl:if>
- <xsl:if test= "name='hasPdgId'">
- Check if particle data identifier exists
- </xsl:if>
- <xsl:if test= "name='pdgId'">
- Particle identificaton number
- </xsl:if>
-
- </td>
- </tr>
- </xsl:for-each>
- </xsl:template>
-</xsl:stylesheet>
diff --git a/Tools/AtlasDoxygen/scripts/pageExtraction.xsl b/Tools/AtlasDoxygen/scripts/pageExtraction.xsl
deleted file mode 100755
index fc780931dd9233cad680b8c8ab5277bdd01d67dc..0000000000000000000000000000000000000000
--- a/Tools/AtlasDoxygen/scripts/pageExtraction.xsl
+++ /dev/null
@@ -1,45 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<xsl:stylesheet xmlns:xsl="http://www.w3.org/1999/XSL/Transform" version="1.0">
- <xsl:param name="path"/>
- <xsl:param name="packageName"/>
- <xsl:output indent="yes" method="html"/>
- <!--Default to no output -->
- <xsl:template match="text()|@*"/>
- <!-- match to root element-->
- <xsl:template match="tagfile">
-
- <!--
- <li>
- <xsl:for-each select="compound">
- <ul><xsl:value-of select="class"/></ul>
- </xsl:for-each>
- </li>
- -->
- <h3><xsl:value-of select="$packageName"/> (<a href="{$path}index.html">mainpage</a>)</h3>
- <ul>
- <xsl:apply-templates/>
- </ul>
- </xsl:template>
-
- <xsl:template match="compound[@kind='class']">
- <li>
-<!-- <xsl:message><xsl:value-of select="$path"/></xsl:message>
- <a href="/afs/cern.ch/atlas/software/builds/nightlies/dev/AtlasOffline/latest_doxygen/InstallArea/doc/TrkTrack/html/{filename}">-->
- <a href="{$path}{filename}">
- <xsl:value-of select="name"/></a>
- </li>
- </xsl:template>
-
-<!--
- <xsl:template match="compound[@kind='class']">
- <li>
- <a href="{name}"><xsl:value-of select="class"/></a>
- </li>
- </xsl:template>
-
- <xsl:template match="name">
-A name
- </xsl:template>
--->
-
-</xsl:stylesheet>
diff --git a/Tools/AtlasDoxygen/scripts/reindex.pl b/Tools/AtlasDoxygen/scripts/reindex.pl
deleted file mode 100755
index 6a3c561fbf2bb58408f04fb57a416e51f72b1f09..0000000000000000000000000000000000000000
--- a/Tools/AtlasDoxygen/scripts/reindex.pl
+++ /dev/null
@@ -1,481 +0,0 @@
-#!/usr/bin/perl
-# ==================================================================================================================================#
-# #
-# reindex -r <rel> -f <file> -d <DOXYTAGPATH> -a <AFSDOXYTAGPATH> #
-# Unix script to reindex all doxygen search.idx indexes in order to create a singular searchable index file. #
-# The script uses search.idx files already created by doxygen in the AFSDOXYTAGPATH. #
-# #
-# Options: #
-# -r|--release <rel> Nightly or build release. #
-# -f|--file Name of the new index file. #
-# -d|--doxpath DOXYTAGPATH Http location where the doxygen is located. #
-# By default for nightly it is #
-# http://atlas-computing.web.cern.ch/atlas-computing/links/nightlyDevDirectory/AtlasOffline/<rel>/InstallArea/doc/ #
-# for build releases it is #
-# http://atlas-computing.web.cern.ch/atlas-computing/links/buildDirectory/AtlasOffline/<rel>/InstallArea/doc/ #
-# -a|--afspath AFSDOXYTAGPATH AFS location where the doxygen is located. #
-# By default for nightly it is #
-# /afs/cern.ch/atlas/software/builds/nightlies/dev/AtlasOffline/<rel>/InstallArea/doc/ #
-# for build releases it is #
-# /afs/cern.ch/atlas/software/builds/AtlasOffline/<rel>/InstallArea/doc/ #
-# -t|--tgtpath TARGETPATH AFS location where the globsearch.idx and globalDoxySearch.php will be copied to #
-# -v|-verbose Print verbose messages while running. #
-# #
-#####################################################################################################################################
-use strict;
-use warnings;
-use Getopt::Long;
-use Pod::Usage;
-#use Devel::Size qw(size total_size);
-
-sub show_help {
- my $script = shift;
- my $message = "Usage: $script -r <rel> [-f <file> -d <DOXYTAGPATH> -a <AFSDOXYTAGPATH>]\n".
- " Options:\n".
- " -r|--release rel Nightly or build release.\n".
- " -f|--file Name of the new index file.\n".
- " -d|--doxpath DOXYTAGPATH Http location where the doxygen is located.\n".
- " -a|--afspath AFSDOXYTAGPATH AFS location where the doxygen is located.\n".
- " -t|-tgtpath TARGETPATH AFS location where the globsearch.idx and globalDoxySearch.php files will be copied to.\n".
- " -h|-?|-help This message\n".
- " -v|-verbose Print verbose messages while running.";
- return $message;
-}
-
-sub readInt
-{
- my $file = shift;
- my $c1 = getc($file); my $c2 = getc($file);
- my $c3 = getc($file); my $c4 = getc($file);
- if (defined($c1) && defined($c2) && defined($c3) && defined($c4)){
- my $b1 = ord($c1); my $b2 = ord($c2);
- my $b3 = ord($c3); my $b4 = ord($c4);
- return ($b1<<24)|($b2<<16)|($b3<<8)|$b4;
- }
- else{
- return 0;
- }
-}
-
-sub readString
-{
- my $file = shift;
- my $result="";
- while (ord(my $c=getc($file)) != 0){ $result.=$c};
- return $result;
-}
-
-sub writeInt
-{
- my $file = shift;
- my $index = shift;
- print $file chr(($index)>>24);
- print $file chr((($index)>>16)&0xff);
- print $file chr((($index)>>8)&0xff);
- print $file chr(($index)&0xff);
-}
-
-sub writeString
-{
- my $file = shift;
- my $s = shift;
-
- print $file "$s\0";
-}
-
-sub computeIndex
-{
- # Fast string hashing
- my $word = shift;
- my $retVal = -1;
- # Simple hashing that allows for substring search
- if (length($word)<2) {return (-1)};
- # high char of the index
- my $hi = ord(substr($word,0,1));
- if ($hi==0) {return (-1)};
- # low char of the index
- my $lo = ord(substr($word,1,1));
- if ($lo==0) {return (-1)};
- # return index
- return ($hi*256+$lo);
-}
-
-sub addUrlIndex
-{
- my $idx = shift;
- my $urls = shift;
- my $hiPriority = shift;
- my $freq = shift;
-
-}
-
-###################### MAIN #####################
-
-my $script=$0;
-my $rel;
-my $outfilename = "globsearch.idx";
-my $DOXYTAGPATH; # Path to the HTML dir containing Doxygen docs
-my $AFSDOXYTAGPATH; # Path to the AFS dir containing Doxygen docs
-my $verbose = 0;
-my $man = 0;
-my $help = 0;
-my $TARGETPATH;
-my $result = GetOptions ("r|release=s"=> \$rel, # string
- "f|file=s" => \$outfilename, # string
- "d|doxpath=s"=> \$DOXYTAGPATH, # string
- "a|afspath=s"=> \$AFSDOXYTAGPATH,# string
- "t|tgtpath=s"=> \$TARGETPATH, # string
- "v|verbose" => \$verbose, # flag
- "h|?|help" => \$help); # flag, help
-
-pod2usage(show_help($0)) if $help;
-pod2usage("$0: No rel defined\n" . show_help($0)) if ( !defined($rel) );
-
-print "$script begin: " , `date`;
-if ($rel =~ /^rel_/)
-{ #location of the nightly
- print "rel=$rel. Setting nightly locations\n";
- $DOXYTAGPATH="http://atlas-computing.web.cern.ch/atlas-computing/links/nightlyDevDirectory/AtlasOffline/$rel/InstallArea/doc/" unless (defined($DOXYTAGPATH));
- $AFSDOXYTAGPATH="/afs/cern.ch/atlas/software/builds/nightlies/dev/AtlasOffline/$rel/InstallArea/doc/" unless (defined($AFSDOXYTAGPATH));
-}
-else
-{ #location of the release
- print "rel=$rel. Setting release locations\n";
- $DOXYTAGPATH="http://atlas-computing.web.cern.ch/atlas-computing/links/buildDirectory/AtlasOffline/$rel/InstallArea/doc/" unless (defined($DOXYTAGPATH));
- $AFSDOXYTAGPATH="/afs/cern.ch/atlas/software/builds/AtlasOffline/$rel/InstallArea/doc/" unless (defined($AFSDOXYTAGPATH));
-}
-
-if ( ! -d "$AFSDOXYTAGPATH" ){
- print "Directory $AFSDOXYTAGPATH does not exist. Exitting...\n";
- exit 1;
-}
-
-my @infilenameArr=`find $AFSDOXYTAGPATH -maxdepth 4 -iname "search.idx"`;
-chomp(@infilenameArr);
-
-my $count;
-my $numIndexEntries=256*256;
-my $buffer = "";
-my $word = "";
-my %cols = ( r => "\033[1;31m",
- g => "\033[1;32m",
- b => "\033[1;34m",
- y => "\033[1;33m",
- p => "\033[1;35m",
- nc => "\033[0;m",
- );
-my @globWordList;
-# globWordlist is an array of hashes
-# index: hash index of the word
-# globWordList[i] --> word1 --> url1word1 --> name
-# --> freqhi
-# --> url2word1 --> name
-# --> freqhi
-# --> word2 --> url1word2 --> name
-# --> freqhi
-# --> url2word2 --> name
-# --> freqhi
-# globWordList[i] = { word => { urls => [0] = $name,
-# [1] = $freqhi,
-# },
-# },
-# };
-
-my $doxyHeader="DOXS";
-my $fail;
-$count = 0;
-for my $infilename (@infilenameArr)
-{# Begin loop over infiles
- my $fileTime = `date`;
- chomp $fileTime;
- my $meminfo = `cat /proc/meminfo`;
- my %mem;
- ($mem{MemFree}) = $meminfo=~/MemFree:\s*(\d+)/;
- ($mem{MemTotal}) = $meminfo=~/MemTotal:\s*(\d+)/;
- ($mem{SwapFree}) = $meminfo=~/SwapFree:\s*(\d+)/;
- ($mem{SwapTotal}) = $meminfo=~/SwapTotal:\s*(\d+)/;
- my $memLine = "Mem: $mem{MemFree}/$mem{MemTotal}, Swap: $mem{SwapFree}/$mem{SwapTotal}";
-# my $memInfo = `cat /proc/meminfo | perl -ne '/MemFree:\ *([0-9]+\ kB)/ && print "$1\n"; /SwapFree:\ *([0-9]+\ kB)/ && print "$1\n"; ' | paste - -`;
- print "$fileTime, $memLine: Opening input file: $infilename\n";
- next if (-z $infilename); #If the file is empty, skip it
-
- open(my $infile, "<", $infilename) || die("Can't open infile: $!");
- my $fileHeader = readString($infile);
- next unless ($fileHeader eq $doxyHeader); #If the file is not a doxy index, skip it.
- binmode($infile);
-
-# (my $path) = $infilename=~/\.\/(.*)\//; #Returns basename of infilename
- (my $path) = $infilename =~ /${AFSDOXYTAGPATH}[\/]?(.*)\//; #Returns the package path relative to the AFSDOXYTAGPATH root.
- my @fileWordList; #wordList beloning to this file only
- ###################### READ FILE #####################
- if ($verbose) {print "################ WORDINDEX ##################\n";}
- for (my $index = 0; $index<$numIndexEntries; $index++)
- {# Begin loop over num of index entries
- $fail = seek($infile, $index*4+4, 0);
- my $idx = readInt($infile);
-
- my %fileWords; #Wrapper for @words, adding the $index (hash) these words belong to.
- if ($idx)
- { # Begin if ($idx)
- if ($verbose) {printf("%spos=%d (0x%0x) idx[%d]=%d (0x%0x)%s\n", $cols{r},($index*4+4),($index*4+4),$index,$idx,$idx,$cols{nc});}
- $fail = seek($infile,$idx,0);
- my $w = readString($infile);
-
- my @words; #Array of words belonging to the same hash ($index)
- while ($w)
- {#Begin loop over indexed words
- my $statidx = readInt($infile);
- my %word = ( "word" => $w,
- "statidx" => $statidx,
- "docs" => [],
- );
- push (@words, \%word);
-
- if ($verbose) {printf ("word=%s statidx=%d (0x%0x)\n", $w, $statidx, $statidx);}
- $w = readString($infile);
- }#End loop over indexed words
- %fileWords = ( "index" => $index,
- "words" => [ @words ],
- );
- } # End if ($idx)
- push (@fileWordList, \%fileWords);
- } # End loop over num of index entries
- if ($verbose) {print "################ WORDLIST ##################\n";}
- my $hashid=-1;
- foreach my $fileWords (@fileWordList)
- {#Begin loop over all word hashes in the fileWordList
- $hashid++;
- my $index = $fileWords->{"index"};
- my $words = $fileWords->{"words"};
- next unless (defined ($words));
- foreach my $word (@$words)
- {#Begin loop over all words beloning to this hash
- my $statidx = $word->{"statidx"};
- $fail = seek($infile,$statidx,0);
- my $filepos = tell($infile);
- if ($verbose) {printf("%sReading statidx: %d (0x%0x) ", $cols{g},$filepos, $filepos);}
-
- my $numDocs = readInt($infile);
- if ($verbose) {printf("numDocs: %d (0x%0x)%s\n", $numDocs, $numDocs, $cols{nc});}
- exit unless ($numDocs < 50000);
- my @docInfo;
- for (my $iDoc=0;$iDoc<$numDocs;$iDoc++)
- {
- my $docidx=readInt($infile);
- my $freqhi=readInt($infile);
- my $freq = $freqhi>>1;
- my $hi = $freqhi&1;
- $docInfo[$iDoc]={"docidx" => $docidx,
- "freq" => $freq,
- "hi" => $hi,
- };
- }#End loop over all words beloning to this hash
- for (my $iDoc=0;$iDoc<$numDocs;$iDoc++)
- {#Begin loop over an indexed word's documents
- $fail = seek($infile,$docInfo[$iDoc]{"docidx"}, 0);
- my $name = readString($infile);
- my $url = readString($infile);
- my $wordKey = $word->{word};
- my $urlKey = "$path/$url";
-# print "$wordKey $docInfo[$iDoc]{docidx} $docInfo[$iDoc]{freq} $urlKey \n";
-# if (defined ($globWordList[$index]->{$wordKey}->{$urlKey}->[1])) {
-# print "index=$index, wordKey=$wordKey urlKey=$urlKey EXISTS! org freq=",$globWordList[$index]->{$wordKey}->{$urlKey}->[1]>>1," ";
-# print "add freq ", $docInfo[$iDoc]{freq}, "\n";
-# }
- $globWordList[$index]->{$wordKey}->{$urlKey}->[0] = $name;
- $globWordList[$index]->{$wordKey}->{$urlKey}->[1] += $docInfo[$iDoc]{freq}<<1;
- $globWordList[$index]->{$wordKey}->{$urlKey}->[1] |= $docInfo[$iDoc]{hi};
- if ($verbose){
- print "name = $name | ";
- print "URL = $urlKey | ";
- print "freq = ", $globWordList[$index]->{$wordKey}->{$urlKey}->[1]>>1 ," | ";
- print "\n";
- }
- }#End loop over an indexed word's documents
- }#End loop over all words beloning to this hash
- }#End loop over all word hashes in the fileWordList
- close $infile;
-} #End loop over infiles
-
-# my $struct_size = size(\@globWordList);
-# my $total_size = total_size(\@globWordList);
-# print "Structure Size=$struct_size\nTotal Size=$total_size\n";
-# Create sorted searchIndex:
-###################### WRITE TO FILE #####################
-my $indexListBegin = 4; # Beginning of the index list in the output file
-my $wordListBegin = $indexListBegin + 4*$numIndexEntries; # Beginning of the word list in the output file
-my $docListBegin; # Beginning of the doc list in the output file
-my $urlListBegin; # Beginning of the url list in the output file
-
-my @wordListOffsets;
-my $wordListOffset = 0;
-
-# first +second pass: compute the size of the wordlist and the wordlist index
-if ($verbose) {print "################ CALCULATING OFFSETS ##################\n";}
-for (my $index = 0; $index<$numIndexEntries; $index++){# Begin loop over num of index entries
- my $globWords = $globWordList[$index];
- if (defined ($globWords)){
- $wordListOffsets[$index] = $wordListBegin + $wordListOffset;
- if ($verbose) { print "wordListOffsets[$index]=$cols{r}$wordListOffsets[$index]$cols{nc}\n ";}
- foreach my $word (keys %$globWords) { #Begin loop over all words belonging to this hash
- my $ws = length($word)+1+4; #word + offset to url info array + zero list terminator
- $wordListOffset += $ws;
- if ($verbose) { print "$word ";}
- } # End loop over all words belonging to this hash
- if ($verbose) { print "\n";}
- $wordListOffset += 1; #zero list terminator
- } else {
- $wordListOffsets[$index]=0;
- }
-} # End loop over num of index entries
-
-my $size = $wordListBegin + $wordListOffset;
-my $padding = $size;
-$size = ($size+3)&~3; # round up to 4 byte boundary
-$padding = $size - $padding;
-
-$docListBegin = $size;
-my @docOffsets;
-my $docOffset = 0;
-$count = 0;
-# third pass: compute offset to stats info for each word
-for (my $index = 0; $index<$numIndexEntries; $index++)
-{# Begin loop over num of index entries
- my $globWords = $globWordList[$index];
- next unless (defined ($globWords));
- foreach my $word (keys %$globWords)
- {#Begin loop over all words beloning to this hash
- my $nDocs = scalar keys %{$globWords->{$word}};
- $docOffsets[$count++] = $docListBegin + $docOffset;
- if ($verbose) { print ("globWordList[$index][?]: word = $word nDocs = $nDocs docOffsets[",$count-1,"] = $cols{g}$docOffsets[$count-1]$cols{nc}\n");}
- $docOffset += 4+$nDocs*8; # count + (url_index,freq) per url
- }#End loop over all words beloning to this hash
-} # End loop over num of index entries
-
-$urlListBegin = $docListBegin + $docOffset;
-my @urlOffsets;
-my $urlOffset = 0;
-$count=0;
-# fourth pass: compute offset for urls:
-for (my $index = 0; $index<$numIndexEntries; $index++)
-{# Begin loop over num of index entries
- my $globWords = $globWordList[$index];
- next unless (defined ($globWords));
- foreach my $word (keys %$globWords)
- {#Begin loop over all words beloning to this hash
- my $nDocs = scalar keys %{$globWords->{$word}};
- my $urls = $globWords->{$word};
- foreach my $url (keys %$urls) {
- my $name = $urls->{$url}->[0];
- $urlOffsets[$count++] = $urlListBegin + $urlOffset;
- if ($verbose) { print "word=$word calc urlOffsets[",$count-1,"]=$urlOffsets[$count-1] url=$url\n";}
- $urlOffset += length($url)+1+
- length($name)+1;
- }
- }#End loop over all words beloning to this hash
-} # End loop over num of index entries
-
-#Begin writing:
-#Write header:
-if ($verbose) {print "################ WRITING FILE ##################\n";}
-open(my $outfile, "+>", $outfilename) || die("Can't open outfile: $!");
-binmode($outfile);
-print $outfile $doxyHeader;
-#Write index
-if ($verbose) { print "$cols{y}******* Writing index ******* $cols{nc}\n";}
-for (my $index = 0; $index<$numIndexEntries; $index++)
-{# Begin loop over num of index entries
- if ($verbose) {
- my $pos = tell ($outfile);
- print "$cols{p}$pos$cols{nc}, write wordListOffsets[$index]=$wordListOffsets[$index]\n" if ($wordListOffsets[$index]>0);
- }
- writeInt($outfile, $wordListOffsets[$index]);
-} # End loop over num of index entries
-
-#Write word lists
-if ($verbose) { print "$cols{y}******* Writing wordList ******* $cols{nc}\n";}
-$count = 0;
-for (my $index = 0; $index<$numIndexEntries; $index++){# Begin loop over num of index entries
- my $globWords = $globWordList[$index];
- next unless (defined ($globWords));
- if ($verbose) {
- my $pos = tell($outfile);
- print "$cols{p}$pos$cols{nc} write words:\n";
- }
- foreach my $word (keys %$globWords)
- {#Begin loop over all words beloning to this hash
- if ($verbose) {print " $word, docOffsets[$count]=$docOffsets[$count]\n";}
- writeString($outfile, $word);
- writeInt($outfile,$docOffsets[$count++]);
- }#End loop over all words beloning to this hash
- print $outfile "\0";
-} # End loop over num of index entries
-
-#Write extra padding bytes:
-for (my $index=0;$index<$padding;$index++) { print $outfile "\0";}
-#Write word statistics:
-if ($verbose) { print "$cols{y}******* Writing docList ******* $cols{nc}\n";}
-$count = 0;
-for (my $index = 0; $index<$numIndexEntries; $index++)
-{# Begin loop over num of index entries
- my $globWords = $globWordList[$index];
- next unless (defined ($globWords));
- foreach my $word (keys %$globWords)
- {# Begin loop over all words beloning to this hash
- my $nDocs = scalar keys %{$globWords->{$word}};
- if ($verbose) {
- my $pos = tell ($outfile);
- print "$cols{p}$pos$cols{nc} write nDocs=$nDocs for word $cols{y}$word$cols{nc}\n";
- }
- writeInt($outfile,$nDocs);
- my $urls = $globWords->{$word};
- foreach my $url (keys %$urls) {# Begin loop over urls
- my $name = $urls->{$url}->[0];
- my $freq = $urls->{$url}->[1]>>1;
- my $hi = $urls->{$url}->[1]&1;
-# my $freqhi = ((($freq)<<1) | $hi);
- my $freqhi = $urls->{$url}->[1];
- if ($verbose) {print (" url=$cols{b}$url$cols{nc}, urlOffset=$urlOffsets[$count], freq=$cols{r}$freq$cols{nc}, hi=$cols{g}$hi$cols{nc}, freqhi=$freqhi\n");}
- writeInt($outfile, $urlOffsets[$count++]);
- writeInt($outfile, $freqhi);
- }# End loop over urls
- }# End loop over all words beloning to this hash
-} # End loop over num of index entries
-
-#Write URLs:
-if ($verbose) { print "$cols{y}******* Writing URLs ******* $cols{nc}\n";}
-for (my $index = 0; $index<$numIndexEntries; $index++)
-{# Begin loop over num of index entries
- my $globWords = $globWordList[$index];
- next unless (defined ($globWords));
- foreach my $word (keys %$globWords)
- {#Begin loop over all words beloning to this hash
- my $urls = $globWords->{$word};
- foreach my $url (keys %$urls) {
- my $name = $urls->{$url}->[0];
- if ($verbose) {
- my $pos = tell($outfile);
- print ("$cols{p}$pos$cols{nc} writing url=$url, name=$name\n");
- }
- writeString($outfile, $name);
- writeString($outfile, $url);
- }
- }#End loop over all words beloning to this hash
-} # End loop over num of index entries
-
-close $outfile;
-print ("File \"$outfilename\" closed.\n");
-if (defined $TARGETPATH) {
- chomp(my $cur_path = `pwd`);
- print ("Moving \"$outfilename\" from $cur_path to $TARGETPATH... ");
- $fail=`mv $outfilename $TARGETPATH`;
- unless ($fail) {print "Success.\n";}
- else {print "Failure.\n";}
- (my $path_to_script) = $0 =~ /(.*)\//;
- print ("Copying \"globalDoxySearch.php\" from $path_to_script to $TARGETPATH... ");
- $fail=`cp $path_to_script/globalDoxySearch.php $TARGETPATH`;
- unless ($fail) {print "Success.\n";}
- else {print "Failure.\n";}
-}
-print "$script end: " , `date`;
-
diff --git a/Trigger/TrigEvent/TrigCaloEvent/CMakeLists.txt b/Trigger/TrigEvent/TrigCaloEvent/CMakeLists.txt
index 0d9bbe572a0e4090f21d9a04e5c5c46cc19b0816..7cd0dc92531f0a11949ca761daf6a3615b6333f7 100644
--- a/Trigger/TrigEvent/TrigCaloEvent/CMakeLists.txt
+++ b/Trigger/TrigEvent/TrigCaloEvent/CMakeLists.txt
@@ -15,7 +15,7 @@ atlas_depends_on_subdirs( PUBLIC
Event/EventKernel
Event/FourMom
GaudiKernel
- Tools/AtlasDoxygen
+
Trigger/TrigEvent/TrigMissingEtEvent
PRIVATE
Calorimeter/CaloEvent
diff --git a/Trigger/TrigEvent/TrigMissingEtEvent/CMakeLists.txt b/Trigger/TrigEvent/TrigMissingEtEvent/CMakeLists.txt
index cdafcac759c435a3b5171f0028d091d9a3f45dc7..90176b6490c6ec6d1b2a7c8f12c443ce868fde4c 100644
--- a/Trigger/TrigEvent/TrigMissingEtEvent/CMakeLists.txt
+++ b/Trigger/TrigEvent/TrigMissingEtEvent/CMakeLists.txt
@@ -11,7 +11,7 @@ atlas_depends_on_subdirs( PUBLIC
Control/DataModel
Control/SGTools
GaudiKernel
- Tools/AtlasDoxygen
+
PRIVATE
Event/xAOD/xAODTrigMissingET
Trigger/TrigDataAccess/TrigSerializeCnvSvc
diff --git a/Trigger/TrigT1/TrigT1Monitoring/CMakeLists.txt b/Trigger/TrigT1/TrigT1Monitoring/CMakeLists.txt
index dcf9754a672bd0104bb966ec4b6fd194682ac738..90cab624c251272e7064460e75d5a142599c6d7b 100644
--- a/Trigger/TrigT1/TrigT1Monitoring/CMakeLists.txt
+++ b/Trigger/TrigT1/TrigT1Monitoring/CMakeLists.txt
@@ -21,7 +21,7 @@ atlas_depends_on_subdirs( PRIVATE
TileCalorimeter/TileConditions
TileCalorimeter/TileEvent
TileCalorimeter/TileIdentifier
- Tools/AtlasDoxygen
+
Tools/LWHists
Trigger/TrigConfiguration/TrigConfInterfaces
Trigger/TrigConfiguration/TrigConfL1Data