From 6a6f363893b53a774349a0a55e533cb7aab31348 Mon Sep 17 00:00:00 2001
From: Edward Moyse <edward.moyse@cern.ch>
Date: Thu, 20 Dec 2018 14:38:09 +0100
Subject: [PATCH] Removing Atlantis, as this is now hosted elsewhere.
---
graphics/AtlantisJava/CMakeLists.txt | 31 -
graphics/AtlantisJava/ant/build.xml | 469 ---
.../AtlantisJava/configuration/PSProlog.txt | 156 -
.../AtlantisJava/configuration/colormap.xml | 369 ---
.../AtlantisJava/configuration/config.dtd | 169 --
.../AtlantisJava/configuration/epusti.csv | 5 -
graphics/AtlantisJava/configuration/pdg.xml | 109 -
.../configuration/rpsplt_fcal.csv | 498 ---
.../AtlantisJava/configuration/rpsplt_hec.csv | 329 --
.../configuration/rpsplt_tile.csv | 169 --
graphics/AtlantisJava/events/event.dtd | 506 ----
graphics/AtlantisJava/geometry/AGeometry.xml | 233 --
.../AtlantisJava/geometry/AMuonGeometry.xml | 220 --
graphics/AtlantisJava/geometry/ATLAS_IDS.xml | 27 -
graphics/AtlantisJava/geometry/IdDict.dtd | 118 -
.../AtlantisJava/geometry/IdDictATLAS.xml | 56 -
.../geometry/IdDictCalorimeter.xml | 731 -----
.../geometry/IdDictForwardDetectors.xml | 140 -
.../geometry/IdDictInnerDetector.xml | 559 ----
.../geometry/IdDictLArCalorimeter.xml | 694 -----
.../geometry/IdDictLArElectrode.xml | 327 --
.../geometry/IdDictLArHighVoltage.xml | 222 --
.../geometry/IdDictTileCalorimeter.xml | 398 ---
graphics/AtlantisJava/img/atlantis_icon.gif | Bin 2939 -> 0 bytes
graphics/AtlantisJava/img/atlantis_log.gif | Bin 18919 -> 0 bytes
graphics/AtlantisJava/img/atlas.jpg | Bin 32018 -> 0 bytes
graphics/AtlantisJava/img/atlas_logo_big.png | Bin 7956 -> 0 bytes
.../img/cursor_DnD_invalid_32x32.gif | Bin 153 -> 0 bytes
.../img/cursor_DnD_invalid_64x64.gif | Bin 204 -> 0 bytes
.../img/cursor_DnD_valid_32x32.gif | Bin 147 -> 0 bytes
.../img/cursor_DnD_valid_64x64.gif | Bin 202 -> 0 bytes
.../AtlantisJava/img/cursor_fisheye_32x32.gif | Bin 1191 -> 0 bytes
.../AtlantisJava/img/cursor_fisheye_64x64.gif | Bin 1259 -> 0 bytes
.../img/cursor_fisheye_bw_32x32.gif | Bin 167 -> 0 bytes
.../img/cursor_fisheye_bw_64x64.gif | Bin 220 -> 0 bytes
.../AtlantisJava/img/cursor_move_32x32.gif | Bin 235 -> 0 bytes
.../AtlantisJava/img/cursor_move_64x64.gif | Bin 286 -> 0 bytes
.../AtlantisJava/img/cursor_pick_32x32.gif | Bin 142 -> 0 bytes
.../AtlantisJava/img/cursor_pick_64x64.gif | Bin 194 -> 0 bytes
.../AtlantisJava/img/cursor_rectsel_32x32.gif | Bin 176 -> 0 bytes
.../AtlantisJava/img/cursor_rectsel_64x64.gif | Bin 207 -> 0 bytes
.../AtlantisJava/img/cursor_rotate_32x32.gif | Bin 1126 -> 0 bytes
.../AtlantisJava/img/cursor_rotate_64x64.gif | Bin 1190 -> 0 bytes
.../img/cursor_rotate_bw_32x32.gif | Bin 238 -> 0 bytes
.../img/cursor_rotate_bw_64x64.gif | Bin 300 -> 0 bytes
.../AtlantisJava/img/cursor_sync_32x32.gif | Bin 916 -> 0 bytes
.../AtlantisJava/img/cursor_sync_64x64.gif | Bin 973 -> 0 bytes
.../AtlantisJava/img/cursor_zoom_32x32.gif | Bin 335 -> 0 bytes
.../AtlantisJava/img/cursor_zoom_64x64.gif | Bin 394 -> 0 bytes
.../AtlantisJava/img/cursor_zoom_bw_32x32.gif | Bin 161 -> 0 bytes
.../AtlantisJava/img/cursor_zoom_bw_64x64.gif | Bin 212 -> 0 bytes
graphics/AtlantisJava/img/downarrow.png | Bin 183 -> 0 bytes
.../AtlantisJava/img/interaction_clock.png | Bin 1033 -> 0 bytes
.../AtlantisJava/img/interaction_fisheye.png | Bin 694 -> 0 bytes
.../AtlantisJava/img/interaction_pick.png | Bin 260 -> 0 bytes
.../AtlantisJava/img/interaction_rotate.png | Bin 608 -> 0 bytes
.../img/interaction_rubberband.png | Bin 699 -> 0 bytes
.../img/interaction_rubberbandyx.png | Bin 699 -> 0 bytes
.../AtlantisJava/img/interaction_scale.png | Bin 422 -> 0 bytes
.../AtlantisJava/img/interaction_skew.png | Bin 271 -> 0 bytes
.../img/interaction_synccursors.png | Bin 455 -> 0 bytes
graphics/AtlantisJava/img/interaction_zmr.png | Bin 1010 -> 0 bytes
graphics/AtlantisJava/img/interaction_zr.png | Bin 234 -> 0 bytes
graphics/AtlantisJava/img/left.gif | Bin 172 -> 0 bytes
graphics/AtlantisJava/img/minerva_log.gif | Bin 19469 -> 0 bytes
graphics/AtlantisJava/img/mode_loop.png | Bin 470 -> 0 bytes
graphics/AtlantisJava/img/mode_loop_on.png | Bin 475 -> 0 bytes
graphics/AtlantisJava/img/mode_random.png | Bin 1032 -> 0 bytes
graphics/AtlantisJava/img/mode_random_on.png | Bin 1045 -> 0 bytes
graphics/AtlantisJava/img/mode_sequential.png | Bin 387 -> 0 bytes
.../AtlantisJava/img/mode_sequential_on.png | Bin 386 -> 0 bytes
graphics/AtlantisJava/img/right.gif | Bin 172 -> 0 bytes
graphics/AtlantisJava/img/toolbar_next.png | Bin 659 -> 0 bytes
graphics/AtlantisJava/img/toolbar_open.png | Bin 550 -> 0 bytes
.../AtlantisJava/img/toolbar_previous.png | Bin 634 -> 0 bytes
graphics/AtlantisJava/img/uparrow.png | Bin 189 -> 0 bytes
graphics/AtlantisJava/lib/Jama.jar | Bin 33329 -> 0 bytes
graphics/AtlantisJava/lib/batik-anim.jar | Bin 95479 -> 0 bytes
graphics/AtlantisJava/lib/batik-ext.jar | Bin 10261 -> 0 bytes
graphics/AtlantisJava/lib/batik-extension.jar | Bin 68051 -> 0 bytes
graphics/AtlantisJava/lib/batik-parser.jar | Bin 73710 -> 0 bytes
graphics/AtlantisJava/lib/batik-script.jar | Bin 61893 -> 0 bytes
graphics/AtlantisJava/lib/batik-xml.jar | Bin 30862 -> 0 bytes
graphics/AtlantisJava/lib/commons-cli-1.0.jar | Bin 30117 -> 0 bytes
.../AtlantisJava/lib/commons-codec-1.4.jar | Bin 58160 -> 0 bytes
.../AtlantisJava/lib/commons-logging-1.1.jar | Bin 52915 -> 0 bytes
graphics/AtlantisJava/lib/jas-aida-dev.jar | Bin 3738 -> 0 bytes
graphics/AtlantisJava/lib/jas-aida.jar | Bin 40424 -> 0 bytes
graphics/AtlantisJava/lib/jas-jel.jar | Bin 33570 -> 0 bytes
graphics/AtlantisJava/lib/jlibeps.jar | Bin 17486 -> 0 bytes
graphics/AtlantisJava/lib/oncrpc.jar | Bin 86081 -> 0 bytes
.../lib/ostermillerutils_1_05_00.jar | Bin 34346 -> 0 bytes
.../AtlantisJava/lib/test/fest-assert-1.2.jar | Bin 89901 -> 0 bytes
.../lib/test/fest-reflect-1.2.jar | Bin 37208 -> 0 bytes
.../AtlantisJava/lib/test/fest-util-1.1.2.jar | Bin 18962 -> 0 bytes
.../lib/test/jcip-annotations-1.0.jar | Bin 2255 -> 0 bytes
.../lib/ws-commons-util-1.0.2.jar | Bin 34407 -> 0 bytes
graphics/AtlantisJava/lib/xml-apis-ext.jar | Bin 85686 -> 0 bytes
.../AtlantisJava/lib/xmlrpc-client-3.1.jar | Bin 45124 -> 0 bytes
.../AtlantisJava/lib/xmlrpc-server-3.1.jar | Bin 75310 -> 0 bytes
.../AtlantisJava/share/InteractiveServer.py | 483 ---
graphics/AtlantisJava/share/MINERVA.jnlp | 84 -
graphics/AtlantisJava/share/atlantis | 13 -
graphics/AtlantisJava/share/atlantis.jnlp | 81 -
graphics/AtlantisJava/share/atlantis_online | 15 -
graphics/AtlantisJava/share/ntupleXML.h | 1351 ---------
.../AtlantisJava/share/specificconfig.jnlp | 83 -
.../src/atlantis/ACommandLine.java | 399 ---
.../src/atlantis/AOpenGLTools.java | 22 -
.../AtlantisJava/src/atlantis/Atlantis.java | 770 -----
.../src/atlantis/canvas/ACanvas.java | 1113 -------
.../canvas/ADrawCalorimeterSummedEndcaps.java | 937 ------
.../src/atlantis/canvas/AGLGraphics.java | 486 ---
.../src/atlantis/canvas/ALayout.java | 231 --
.../canvas/ALayoutChangeListener.java | 16 -
.../src/atlantis/canvas/ALegendWindow.java | 197 --
.../src/atlantis/canvas/AOverlay.java | 193 --
.../src/atlantis/canvas/AScale.java | 356 ---
.../src/atlantis/canvas/AScaleBorder.java | 1282 --------
.../src/atlantis/canvas/ATitleMenuBar.java | 92 -
.../src/atlantis/canvas/AWindow.java | 1549 ----------
.../src/atlantis/canvas/AWindowGLView.java | 337 ---
.../src/atlantis/canvas/AWindowSwingView.java | 57 -
.../src/atlantis/canvas/package.html | 23 -
.../src/atlantis/config/AConfig.java | 432 ---
.../src/atlantis/config/AConfigNode.java | 263 --
.../src/atlantis/config/AConfigUpdater.java | 405 ---
.../src/atlantis/config/ADefaultValues.java | 206 --
.../src/atlantis/config/package.html | 6 -
.../src/atlantis/data/A3DPointData.java | 254 --
.../src/atlantis/data/AAODData.java | 359 ---
.../src/atlantis/data/ABJetData.java | 134 -
.../src/atlantis/data/ACSCDData.java | 304 --
.../src/atlantis/data/ACSCData.java | 197 --
.../src/atlantis/data/ACalorimeterData.java | 2662 -----------------
.../src/atlantis/data/ACalorimeterRPSPLT.java | 260 --
.../src/atlantis/data/AClusterData.java | 385 ---
.../atlantis/data/ACompositeParticleData.java | 114 -
.../src/atlantis/data/ADHelix.java | 539 ----
.../src/atlantis/data/AETMisData.java | 562 ----
.../src/atlantis/data/AElectronData.java | 180 --
.../src/atlantis/data/AEmTauROIData.java | 34 -
.../src/atlantis/data/AEventFromXML.java | 786 -----
.../src/atlantis/data/AFCALData.java | 1228 --------
.../src/atlantis/data/AG4StepData.java | 559 ----
.../src/atlantis/data/AHECData.java | 574 ----
.../src/atlantis/data/AHelix.java | 854 ------
.../src/atlantis/data/AHelixAODData.java | 178 --
.../src/atlantis/data/AHistogram.java | 422 ---
.../src/atlantis/data/AHistogramData.java | 15 -
.../src/atlantis/data/AHitData.java | 487 ---
.../src/atlantis/data/AInDetSegmentData.java | 30 -
.../src/atlantis/data/AInDetTrackData.java | 164 -
.../src/atlantis/data/AJetData.java | 782 -----
.../src/atlantis/data/AJetROIData.java | 38 -
.../src/atlantis/data/ALArData.java | 1032 -------
.../atlantis/data/ALVL1JetElementData.java | 446 ---
.../src/atlantis/data/ALVL1ResultData.java | 292 --
.../atlantis/data/ALVL1TriggerTowerData.java | 800 -----
.../src/atlantis/data/ALegoData.java | 1042 -------
.../src/atlantis/data/AMBTSData.java | 595 ----
.../src/atlantis/data/AMDTData.java | 338 ---
.../src/atlantis/data/AMuonData.java | 95 -
.../src/atlantis/data/AMuonHitData.java | 192 --
.../src/atlantis/data/AMuonROIData.java | 34 -
.../src/atlantis/data/AMuonSegmentData.java | 56 -
.../src/atlantis/data/AMuonTrackData.java | 200 --
.../src/atlantis/data/AOldHelix.java | 338 ---
.../src/atlantis/data/APDGTable.java | 107 -
.../src/atlantis/data/AParticle.java | 57 -
.../src/atlantis/data/APhotonData.java | 166 -
.../src/atlantis/data/APixelClusterData.java | 403 ---
.../src/atlantis/data/APixelRDOData.java | 160 -
.../src/atlantis/data/APulseShapePlot.java | 513 ----
.../src/atlantis/data/AROIData.java | 334 ---
.../src/atlantis/data/ARPCData.java | 311 --
.../src/atlantis/data/ARVxData.java | 1043 -------
.../src/atlantis/data/AS3DData.java | 486 ---
.../src/atlantis/data/ASMTrData.java | 626 ----
.../src/atlantis/data/ASNPData.java | 659 ----
.../src/atlantis/data/ASTrData.java | 254 --
.../src/atlantis/data/ASVxData.java | 167 --
.../src/atlantis/data/ASegmentData.java | 164 -
.../src/atlantis/data/ASiClusterData.java | 385 ---
.../src/atlantis/data/ASiClusterRDOData.java | 481 ---
.../src/atlantis/data/ATGCData.java | 340 ---
.../src/atlantis/data/ATILEData.java | 843 ------
.../src/atlantis/data/ATRTData.java | 752 -----
.../src/atlantis/data/ATauJetData.java | 198 --
.../src/atlantis/data/ATrackData.java | 1389 ---------
.../src/atlantis/data/ATrackResidualData.java | 323 --
.../src/atlantis/data/ATrigS3DData.java | 252 --
.../src/atlantis/data/ATriggerInfoData.java | 213 --
.../src/atlantis/data/AVertex.java | 328 --
.../src/atlantis/data/AVertexFit.java | 289 --
.../src/atlantis/data/package.html | 8 -
.../src/atlantis/event/AAssociation.java | 298 --
.../atlantis/event/AAssociationManager.java | 118 -
.../atlantis/event/ABufferedEventSource.java | 263 --
.../src/atlantis/event/AData.java | 1661 ----------
.../src/atlantis/event/AEpsImageProducer.java | 117 -
.../src/atlantis/event/AEvent.java | 1051 -------
.../src/atlantis/event/AEventInfo.java | 212 --
.../src/atlantis/event/AEventInfoPrinter.java | 60 -
.../src/atlantis/event/AEventManager.java | 319 --
.../src/atlantis/event/AEventSource.java | 114 -
.../atlantis/event/AEventSourceException.java | 65 -
.../src/atlantis/event/AFileEventSource.java | 309 --
.../src/atlantis/event/AFilter.java | 275 --
.../src/atlantis/event/AImageProducer.java | 129 -
.../src/atlantis/event/ANewEventListener.java | 18 -
.../event/ANewEventSourceListener.java | 16 -
.../atlantis/event/AObjectsAssociation.java | 26 -
.../src/atlantis/event/APngImageProducer.java | 119 -
.../atlantis/event/AStreamedEventSource.java | 52 -
.../src/atlantis/event/ASvgImageProducer.java | 117 -
.../src/atlantis/event/AURLEventSource.java | 385 ---
.../src/atlantis/event/AZipEventSource.java | 478 ---
.../event/oncrpc/AONCRPCEventSource.java | 304 --
.../src/atlantis/event/oncrpc/Event.java | 86 -
.../atlantis/event/oncrpc/EventRequest.java | 79 -
.../src/atlantis/event/oncrpc/Server.java | 47 -
.../src/atlantis/event/oncrpc/Streams.java | 53 -
.../src/atlantis/event/package.html | 9 -
.../atlantis/event/xmlrpc/AClientXMLRPC.java | 244 --
.../event/xmlrpc/ARemoteCallerException.java | 22 -
.../atlantis/event/xmlrpc/AServerXMLRPC.java | 43 -
.../xmlrpc/AServerXMLRPCEventSource.java | 146 -
.../event/xmlrpc/AXMLRPCEventSource.java | 238 --
.../src/atlantis/geometry/AAtlasDetector.java | 119 -
.../geometry/ABarrelCalorimeterDetector.java | 284 --
.../geometry/ABarrelSiliconDetector.java | 276 --
.../atlantis/geometry/ABarrelTRTDetector.java | 184 --
.../src/atlantis/geometry/ABoxDetector.java | 172 --
.../src/atlantis/geometry/ABoxDetectors.java | 168 --
.../geometry/ACalorimeterDetector.java | 699 -----
.../src/atlantis/geometry/ADetector.java | 157 -
.../atlantis/geometry/ADetectorSystem.java | 122 -
.../src/atlantis/geometry/ADetectors.java | 114 -
.../src/atlantis/geometry/ADiscDetector.java | 57 -
.../geometry/AEndcapCalorimeterDetector.java | 328 --
.../geometry/AEndcapCryostatDetector.java | 158 -
.../geometry/AEndcapSiliconDetector.java | 220 --
.../atlantis/geometry/AEndcapTRTDetector.java | 173 --
.../geometry/AGapCalorimeterDetector.java | 179 --
.../atlantis/geometry/AGeneralDetectors.java | 71 -
.../geometry/AGeometryFromXMLReader.java | 286 --
.../atlantis/geometry/ARectangleDetector.java | 49 -
.../src/atlantis/geometry/ATBxDetector.java | 81 -
.../atlantis/geometry/ATrapezoidDetector.java | 211 --
.../geometry/ATrapezoidDetectors.java | 163 -
.../src/atlantis/geometry/package.html | 8 -
.../src/atlantis/globals/AGlobals.java | 202 --
.../src/atlantis/globals/package.html | 13 -
.../graphics/AAbstractGraphics2D.java | 315 --
.../src/atlantis/graphics/AClipper.java | 226 --
.../src/atlantis/graphics/ACoord.java | 355 ---
.../src/atlantis/graphics/ACursorFactory.java | 227 --
.../atlantis/graphics/ADrawParameters.java | 98 -
.../src/atlantis/graphics/ADrawable.java | 24 -
.../atlantis/graphics/ADrawnGraphics2D.java | 149 -
.../atlantis/graphics/ADummyGraphics2D.java | 215 --
.../atlantis/graphics/AGLPixelGraphics.java | 47 -
.../src/atlantis/graphics/AGraphics.java | 407 ---
.../src/atlantis/graphics/AIcon.java | 28 -
.../src/atlantis/graphics/ALegoDraw.java | 1150 -------
.../atlantis/graphics/APickingGraphics2D.java | 432 ---
.../src/atlantis/graphics/APixelGraphics.java | 304 --
.../graphics/ATemplateGraphics2D.java | 47 -
.../atlantis/graphics/AVectorGraphics.java | 309 --
.../atlantis/graphics/colormap/AColorMap.java | 365 ---
.../graphics/colormap/MappedColor.java | 93 -
.../src/atlantis/graphics/dnd/ACallBack.java | 9 -
.../src/atlantis/graphics/dnd/ADnDButton.java | 88 -
.../src/atlantis/graphics/dnd/ADnDLabel.java | 184 --
.../atlantis/graphics/dnd/ADragListener.java | 9 -
.../graphics/dnd/AObjectTransferable.java | 62 -
.../graphics/encoders/AImageEncoder.java | 167 --
.../graphics/encoders/PngEncoder.java | 582 ----
.../atlantis/graphics/layout/AFlowLayout.java | 115 -
.../atlantis/graphics/layout/AGridLayout.java | 214 --
.../graphics/layout/ARunAnotherLayout.java | 26 -
.../src/atlantis/graphics/package.html | 6 -
.../src/atlantis/gui/AAboutDialog.java | 214 --
.../src/atlantis/gui/ACheckBox.java | 33 -
.../src/atlantis/gui/ACheckNode.java | 86 -
.../gui/AClosingConfirmationDialog.java | 63 -
.../atlantis/gui/AColorComboBoxRenderer.java | 126 -
.../src/atlantis/gui/AColorHelpDialog.java | 260 --
.../src/atlantis/gui/AColorMapDialog.java | 109 -
.../src/atlantis/gui/AColorMapEditor.java | 281 --
.../src/atlantis/gui/AComboBox.java | 51 -
.../src/atlantis/gui/AConfigWriter.java | 417 ---
.../src/atlantis/gui/AControlButton.java | 84 -
.../src/atlantis/gui/ACrashReporter.java | 232 --
.../atlantis/gui/ADefaultCellAttribute.java | 129 -
.../src/atlantis/gui/ADemoDialog.java | 434 ---
.../src/atlantis/gui/ADemoFileChooser.java | 41 -
.../src/atlantis/gui/ADemoLoop.java | 200 --
.../src/atlantis/gui/AEventLoopDialog.java | 346 ---
.../atlantis/gui/AEventPropertiesDialog.java | 721 -----
.../src/atlantis/gui/AEventQueue.java | 165 -
.../src/atlantis/gui/AEventSourceToolBar.java | 523 ----
.../src/atlantis/gui/AFileControl.java | 210 --
.../AtlantisJava/src/atlantis/gui/AGUI.java | 572 ----
.../src/atlantis/gui/AGUILayoutManager.java | 131 -
.../src/atlantis/gui/AGUIUtilities.java | 167 --
.../src/atlantis/gui/AHelpControl.java | 45 -
.../src/atlantis/gui/AHelpSystem.java | 118 -
.../src/atlantis/gui/AInteractionToolBar.java | 429 ---
.../src/atlantis/gui/AItemTabbedPane.java | 144 -
.../src/atlantis/gui/ALayoutDialog.java | 109 -
.../src/atlantis/gui/ALazyPanel.java | 109 -
.../src/atlantis/gui/AListsControl.java | 28 -
.../src/atlantis/gui/ALogPane.java | 205 --
.../src/atlantis/gui/AMainLogPane.java | 13 -
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.../src/atlantis/gui/AMouseHelpDialog.java | 312 --
.../atlantis/gui/AMultiSpanCellTableUI.java | 81 -
.../src/atlantis/gui/AMutableCheckBox.java | 183 --
.../src/atlantis/gui/AOpenGLControl.java | 160 -
.../src/atlantis/gui/AParamGUIDataModel.java | 173 --
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.../src/atlantis/gui/AParametersTable.java | 253 --
.../src/atlantis/gui/APasswordDialog.java | 203 --
.../atlantis/gui/APointerPositionWindow.java | 175 --
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.../src/atlantis/gui/APreferencesControl.java | 429 ---
.../atlantis/gui/AReadColorMapChooser.java | 35 -
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.../src/atlantis/gui/AStartupWindow.java | 86 -
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.../src/atlantis/gui/AWindowControl.java | 190 --
.../src/atlantis/gui/AXMLFileChooser.java | 108 -
.../src/atlantis/gui/AXMLGeometryChooser.java | 73 -
.../src/atlantis/gui/package.html | 8 -
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.../interactions/AEnterExitListener.java | 13 -
.../interactions/AFishEyeChangeListener.java | 17 -
.../atlantis/interactions/AFishEyeGroup.java | 116 -
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.../atlantis/interactions/AInteraction.java | 323 --
.../interactions/AInteractionGroup.java | 143 -
.../AInteractionsConfigReader.java | 69 -
.../interactions/AInteractionsManager.java | 535 ----
.../atlantis/interactions/ALineSegment.java | 165 -
.../src/atlantis/interactions/AModifier.java | 85 -
.../interactions/AMouseDragListener.java | 20 -
.../interactions/AMousePressListener.java | 16 -
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.../interactions/ARectangleVPSelection.java | 524 ----
.../interactions/ARectangleYXSelection.java | 320 --
.../ARotatedRectangleSelection.java | 211 --
.../interactions/ARubberbandGroup.java | 109 -
.../interactions/ARubberbandYXGroup.java | 109 -
.../interactions/AScaleCopyGroup.java | 14 -
.../interactions/AScaleCopyInteraction.java | 24 -
.../src/atlantis/interactions/ASelection.java | 455 ---
.../src/atlantis/interactions/ASkewGroup.java | 14 -
.../interactions/ASkewInteraction.java | 123 -
.../interactions/ASleepMouseDragListener.java | 13 -
.../interactions/ASquareSelection.java | 87 -
.../interactions/ASynchroCursorsGroup.java | 15 -
.../ASynchroCursorsInteraction.java | 483 ---
.../interactions/AVPSelectionGroup.java | 15 -
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.../interactions/AXSkewSelection.java | 124 -
.../interactions/AXSliceSelection.java | 79 -
.../interactions/AYSkewSelection.java | 124 -
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.../src/atlantis/interactions/AZMRGroup.java | 14 -
.../interactions/AZMRInteraction.java | 700 -----
.../src/atlantis/interactions/package.html | 11 -
.../src/atlantis/list/AColorIcon.java | 69 -
.../AtlantisJava/src/atlantis/list/AList.java | 128 -
.../src/atlantis/list/AListManager.java | 1765 -----------
.../src/atlantis/list/AListProcessor.java | 10 -
.../src/atlantis/list/package.html | 6 -
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delete mode 100644 graphics/AtlantisJava/test/src/guitest/InteractionToolBarTest.java
delete mode 100644 graphics/AtlantisJava/test/src/guitest/LoadEventFailureTest.java
delete mode 100644 graphics/AtlantisJava/test/src/guitest/LoadEventTest.java
delete mode 100644 graphics/AtlantisJava/test/src/guitest/LoadEventWithInvalidRecVertexDataTest.java
delete mode 100644 graphics/AtlantisJava/test/src/guitest/LoadEventWithValidRecVertexDataTest.java
delete mode 100644 graphics/AtlantisJava/test/src/guitest/LoadEventsManyTimesTest.java
delete mode 100644 graphics/AtlantisJava/test/src/guitest/MuonTrackCollectionsEmptyTest.java
delete mode 100644 graphics/AtlantisJava/test/src/guitest/MuonTrackCollectionsTest.java
delete mode 100644 graphics/AtlantisJava/test/src/guitest/OverlayTest.java
delete mode 100644 graphics/AtlantisJava/test/src/guitest/ProjectionsTest.java
delete mode 100644 graphics/AtlantisJava/test/src/guitest/ReadNextAndPreviousEventTest.java
delete mode 100644 graphics/AtlantisJava/test/src/guitest/StartAndExitTest.java
delete mode 100644 graphics/AtlantisJava/test/src/guitest/TabsTest.java
delete mode 100644 graphics/AtlantisJava/test/src/testutils/AtlantisInit.java
delete mode 100644 graphics/AtlantisJava/test/src/testutils/TeeOutputStream.java
delete mode 100644 graphics/AtlantisJava/test/src/testutils/TestUtils.java
diff --git a/graphics/AtlantisJava/CMakeLists.txt b/graphics/AtlantisJava/CMakeLists.txt
deleted file mode 100644
index 7d9ae4dd600..00000000000
--- a/graphics/AtlantisJava/CMakeLists.txt
+++ /dev/null
@@ -1,31 +0,0 @@
-################################################################################
-# Package: AtlantisJava
-################################################################################
-
-# Declare the package name:
-atlas_subdir( AtlantisJava )
-
-# External dependencies:
-find_package( Java )
-
-# Install files from the package:
-atlas_install_joboptions( share/InteractiveServer.py )
-atlas_install_scripts( share/atlantis share/atlantis_online )
-atlas_install_generic( lib/*.jar
- DESTINATION "share/AtlantisJava/lib"
- EXECUTABLE )
-atlas_install_generic( img/*.gif img/*.png img/*.jpg
- DESTINATION "share/AtlantisJava/img"
- EXECUTABLE )
-atlas_install_generic( configuration/*.xml configuration/*.csv configuration/PSProlog.txt
- DESTINATION "share/AtlantisJava/configuration"
- EXECUTABLE )
-atlas_install_generic( events/event.dtd events/*.zip
- DESTINATION "share/AtlantisJava/events"
- EXECUTABLE )
-atlas_install_generic( geometry/*.xml
- DESTINATION "share/AtlantisJava/geometry"
- EXECUTABLE )
-atlas_install_generic( help/help.jar help/online.xml help/*.png
- DESTINATION "share/AtlantisJava/help"
- EXECUTABLE )
diff --git a/graphics/AtlantisJava/ant/build.xml b/graphics/AtlantisJava/ant/build.xml
deleted file mode 100755
index 1172e921def..00000000000
--- a/graphics/AtlantisJava/ant/build.xml
+++ /dev/null
@@ -1,469 +0,0 @@
-<?xml version="1.0"?>
-
-<!-- Main Ant build file for Atlantis -->
-
-<!-- basedir attribute to be adjusted - target build directory - - - - - -->
-<project name="Atlantis" default="usage" basedir="..">
- <!-- begin properties - - - - - - - - - - - - - - - - - - - - - - - - -->
- <!-- read in overriden properties from ant.properties file - - - - - -->
- <property file="ant.properties"/>
- <property name="appName" value="Atlantis"/>
-
- <!-- Use Java 1.6.
- Note that this controls the source code accepted and bytecode generated but
- does NOT ensure that the correct libraries are available so in principle you
- could still build code that requires different libraries to run.
- This was added when we needed to enforve Java 1.5 but 1.6 was already
- the most commonly installed version. -->
- <property name="ant.build.javac.source" value="1.6"/>
-
- <!-- webstart codebase with appropriate default -->
- <property name="codebase" value="http://www.cern.ch/atlantis/webstart"/>
-
- <!-- password for webstart certificate - certificate is created in
- webstart target, used to sign *.jar files and erased afterwards -->
- <property name="password" value="webstart_certificate_atlantis_password"/>
-
- <!-- list of "specific system configurations" in configurations/config-*.xml -->
- <!-- NOT including MINERVA since this needs a slightly different JNLP file to load events from a URL -->
- <property name="configs"
- value="acr-general,acr-public,l1calo-acr,lar-acr,lar-publications,mbts-acr,mdt-acr,pixel-acr,pixel-publications,sct-acr,sct-publications,tgc-acr,tile-acr,tile-publications,trt-acr,trt-publications"/>
-
- <!-- timeout in milliseconds for JUnit tests, applies to each forked JVM instance -->
- <property name="test.timeout" value="300000"/>
-
- <!-- directories - - - - - - - - - - - - - - - - - - - - - - - - - - -->
- <property name="src.src" value="src"/>
- <property name="lib.src" value="lib"/>
- <property name="test.src" value="test/src"/>
- <property name="test.events" value="test/events"/>
- <!-- runtime directories and files -->
- <property name="conf" value="configuration"/>
- <property name="events" value="events"/>
- <property name="geom" value="geometry"/>
- <property name="help" value="help"/>
- <property name="img" value="img"/>
- <property name="share" value="share"/>
-
- <property name="conf.src" value="${conf}"/>
- <property name="events.src" value="${events}"/>
- <property name="geom.src" value="${geom}"/>
- <property name="help.src" value="${help}"/>
- <property name="img.src" value="${img}"/>
- <property name="share.src" value="${share}"/>
-
- <property name="conf.run" value="${targetDir}/${conf}"/>
- <property name="events.run" value="${targetDir}/${events}"/>
- <property name="geom.run" value="${targetDir}/${geom}"/>
- <property name="help.run" value="${targetDir}/${help}"/>
- <property name="img.run" value="${targetDir}/${img}"/>
- <property name="share.run" value="${targetDir}/${share}"/>
-
- <property name="class.run" value="${targetDir}/classes"/>
- <property name="lib.run" value="${targetDir}/lib"/>
- <property name="test.run" value="${targetDir}/classes-test"/>
-
- <!-- directories for test libraries and output -->
- <property name="lib.test" value="${targetDir}/lib/test"/>
- <property name="report.test" value="${targetDir}/report"/>
-
- <!-- Atlantis - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
- <property name="atlantis.jar" value="${targetDir}/atlantis.jar"/>
- <property name="atlantis.main.class" value="atlantis.Atlantis"/>
-
- <!-- Classpath for manifest in Jar file -->
- <path id="classpath.mf">
- <fileset dir="${lib.run}">
- <include name="**/*.jar"/>
- </fileset>
- <fileset dir="${help.run}">
- <include name="**/*.jar"/>
- </fileset>
- </path>
-
- <!-- "foreach" task needed to generate specific system configs, provided by ant-contrib -->
- <taskdef resource="net/sf/antcontrib/antcontrib.properties">
- <classpath>
- <pathelement location="${lib.src}/build/ant-contrib-1.0b3.jar"/>
- </classpath>
- </taskdef>
-
-
- <!-- =============================================================== -->
-
- <!-- targets begin - - - - - - - - - - - - - - - - - - - - - - - - - -->
-
- <!-- preinit target - - - - - - - - - - - - - - - - - - - - - - - - - -->
- <target name="preinit" description="Test if targetDir argument is set">
- <fail unless="targetDir">
- targetDir variable must be set - try: ant usage
- example: ant -DtargetDir="test" all
- </fail>
- <echo>Atlantis build will be made into ${targetDir} directory</echo>
- </target>
-
-
- <!-- init target - - - - - - - - - - - - - - - - - - - - - - - - - - -->
- <target name="init" depends="preinit"
- description="Makes required directories, copies libs">
- <mkdir dir="${lib.run}"/>
- <!-- For runtime libraries use include element to take only Jar files from lib directory,
- not build subdirectory -->
- <copy todir="${lib.run}">
- <fileset dir="${lib.src}">
- <include name="*.jar"/>
- </fileset>
- </copy>
-
- <mkdir dir="${conf.run}"/>
- <copy todir="${conf.run}">
- <fileset dir="${conf.src}"/>
- </copy>
-
- <mkdir dir="${events.run}"/>
- <copy todir="${events.run}">
- <fileset dir="${events.src}"/>
- </copy>
-
- <mkdir dir="${geom.run}"/>
- <copy todir="${geom.run}">
- <fileset dir="${geom.src}"/>
- </copy>
-
- <mkdir dir="${help.run}"/>
- <copy todir="${help.run}">
- <fileset dir="${help.src}">
- <include name="help.jar"/>
- </fileset>
- </copy>
-
- <mkdir dir="${img.run}"/>
- <copy todir="${img.run}">
- <fileset dir="${img.src}"/>
- </copy>
-
- <mkdir dir="${share.run}"/>
- <copy todir="${share.run}">
- <fileset dir="${share.src}"/>
- </copy>
-
- <mkdir dir="${class.run}"/>
-
- </target>
-
-
-
- <!-- compile target -->
- <target name="compile" depends="init"
- description="Compiles all source files">
-
- <javac includeAntRuntime="false" srcdir="${src.src}" destdir="${class.run}" deprecation="on" verbose="no">
- <!-- <compilerarg value="-Xlint:unchecked"/> -->
- <include name="**/*.java"/>
- <classpath>
- <fileset dir="${lib.run}">
- <include name="**/*.jar"/>
- </fileset>
- </classpath>
- </javac>
- </target>
-
-
- <!-- all target - - - - - - - - - - - - - - - - - - - - - - - - - - -->
- <target name="all" depends="jar, clean"
- description="Copy runtime files, build and clean up"/>
-
- <!-- jar-atlantis target - - - - - - - - - - - - - - - - - - - - - - -->
- <!-- Keep for compatibility with existing CMT requirements file -->
- <target name="jar-atlantis" depends="all"
- description="Create jar file of Atlantis">
- </target>
-
- <!-- jar target - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
- <target name="jar" depends="compile"
- description="Create all jar files for deployment">
- <manifestclasspath property="jar.classpath" jarfile="${atlantis.jar}">
- <classpath refid="classpath.mf"/>
- </manifestclasspath>
-
- <!-- jar - - - - - - - - - - - - - - - - - - - - - - - - - - - - -->
- <jar destfile="${atlantis.jar}">
- <fileset dir="${class.run}" />
- <fileset dir="${targetDir}">
- <exclude name="classes/*"/>
- <exclude name="lib/*"/>
- <exclude name="help/*"/>
- <include name="*/*"/>
- </fileset>
- <manifest>
- <attribute name="Built-By" value="${user.name}"/>
- <attribute name="Main-Class" value="${atlantis.main.class}"/>
- <attribute name="Class-Path" value="${jar.classpath}"/>
- <attribute name="Implementation-Title" value="Atlantis"/>
- </manifest>
- </jar>
- </target>
-
- <!-- webstartcommon target - - - - - - - - - - - - - - - - - - - - -->
- <target name="webstartcommon" depends="compile">
- <manifestclasspath property="jar.classpath" jarfile="${atlantis.jar}">
- <classpath refid="classpath.mf"/>
- </manifestclasspath>
-
- <jar destfile="${atlantis.jar}">
- <fileset dir="${class.run}" />
-
- <fileset dir="${targetDir}">
- <exclude name="classes/*"/>
- <exclude name="lib/*"/>
- <exclude name="help/*"/>
- <include name="*/*"/>
- </fileset>
-
- <manifest>
- <attribute name="Built-By" value="${user.name}"/>
- <attribute name="Main-Class" value="${atlantis.main.class}"/>
- <attribute name="Class-Path" value="${jar.classpath}"/>
- <attribute name="Implementation-Title" value="Atlantis"/>
- </manifest>
- </jar>
-
- <!-- clean up, leave only lib/*.jar, help/*.jar, atlantis.jar -->
- <delete dir="${conf.run}"/>
- <delete dir="${events.run}"/>
- <delete dir="${geom.run}"/>
- <delete dir="${img.run}"/>
- <delete dir="${share.run}"/>
-
- <antcall target="clean"/>
- <antcall target="webstartjarsigner"/>
- </target>
-
-
- <!-- webstart - distribution via webstart (lib/*.jar, help/*.jar and
- atlantis.jar (includes all data files) -->
- <target name="webstart" depends="webstartcommon"
- description="atlantis distribution for Java WebStart">
-
- <!-- copy webstart .jnlp files -->
- <copy file="${share.src}/atlantis.jnlp" todir="${targetDir}">
- <filterset>
- <filter token="CODEBASE" value="${codebase}"/>
- </filterset>
- </copy>
-
- </target>
-
-
- <!-- webstart - MINERVA version -->
- <target name="webstart-minerva" depends="compile"
- description="Atlantis MINERVA distribution for Java WebStart">
-
- <!-- copy webstart .jnlp files -->
- <copy file="${share.src}/MINERVA.jnlp" todir="${targetDir}">
- <filterset>
- <filter token="CODEBASE" value="${codebase}"/>
- </filterset>
- </copy>
-
- </target>
-
-
- <target name="webstart-config">
- <!-- copy webstart .jnlp files -->
- <copy file="${share.src}/specificconfig.jnlp" tofile="${targetDir}/${config}.jnlp">
- <filterset>
- <filter token="CODEBASE" value="${codebase}"/>
- <filter token="HREF" value="${config}.jnlp"/>
- <filter token="CONFIG" value="config-${config}.xml"/>
- </filterset>
- </copy>
- </target>
-
-
- <!-- webstart including basic atlantis.jnlp and "specific system configurations" -->
- <target name="webstart-all" depends="webstart,webstart-specificconfigs,webstart-minerva"
- description="Atlantis for Java Webstart including basic atlantis.jnlp and specific system configurations"/>
-
-
- <target name="webstart-specificconfigs">
- <foreach param="config" list="${configs}" target="webstart-config"/>
- </target>
-
-
- <!-- webstartjarsigner target - - - - - - - - - - - - - - - - - - - -->
- <target name="webstartjarsigner" description="Sign all jar files">
- <delete file="${targetDir}/keystore"/>
- <exec executable="${java.home}/bin/keytool">
- <arg line="-genkey -dname 'cn=Atlantis team' -alias Atlantis
- -keypass ${password} -keystore ${targetDir}/keystore
- -storepass ${password} -validity 180"/>
- </exec>
- <signjar alias="Atlantis"
- keystore="${targetDir}/keystore"
- keypass="${password}"
- storepass="${password}">
-
- <fileset file="${lib.run}/*.jar" />
- <fileset file="${help.run}/*.jar"/>
- <fileset file="${atlantis.jar}"/>
- </signjar>
- <delete file="${targetDir}/keystore"/>
- </target>
-
-
-
- <!-- updateconfigurations target - - - - - - - - - - - - - - - - - - -->
- <!-- update special configurations - jython script performs update of
- all special / customised configurations shipped with atlantis and then
- runs Atlantis with each configuration file -->
- <target name="updateconfigs" depends="jar"
- description="Update / synchronise customised configuration files">
- <echo>Requires jython available in PATH, otherwise fails.</echo>
-
- <!-- arg to exec - arguments to specify atlantis distribution direct.
- and where the configuration files for updating are located -->
- <!-- exec for unix, mac -->
- <exec executable="jython" osfamily="unix" failonerror="true">
- <arg line="share/configupdater.py --atlantis ${targetDir}
- --update ${conf.src}"/>
- </exec>
- <!-- exec for windows -->
- <exec executable="cmd" osfamily="windows" failonerror="true">
- <arg value="/c"/>
- <arg value="jython.bat"/>
- <arg value="share\configupdater.py"/>
- <arg value="--atlantis"/>
- <arg line="${targetDir}"/>
- <arg line="--update"/>
- <arg line="${conf.src}"/>
- </exec>
-
- <echo>Deleting build directory ${targetDir}, calling delete ...</echo>
- <delete dir="${targetDir}"/>
- </target>
-
- <!-- javadoc target - - - - - - - - - - - - - - - - - - - - - - - - - -->
- <target name="javadoc" description="Make Javadoc documentation">
- <mkdir dir="${targetDir}" />
-
- <javadoc packagenames="atlantis.*"
- sourcepath="${src.src}"
- destdir="${targetDir}"
- overview="${src.src}/overview.html"
- doctitle="Atlantis event display for ATLAS"
- >
- <classpath>
- <fileset dir="${lib.src}">
- <include name="**/*.jar"/>
- </fileset>
- </classpath>
- </javadoc>
- </target>
-
- <!-- clean target - - - - - - - - - - - - - - - - - - - - - - - - - -->
- <target name="clean" description="Erase *.class generated files">
- <delete dir="${class.run}"/>
- </target>
-
- <target name="test" depends="unit-tests,gui-tests" description="Run all tests">
- <!-- If testcase is set, specified test is run here. -->
- <junit printsummary="yes" haltonerror="no" haltonfailure="no" failureProperty="test.failed" errorProperty="test.failed"
- fork="yes" timeout="${test.timeout}">
- <sysproperty key="atlantis.test.events" file="${test.events}"/>
- <formatter type="xml"/>
- <test name="${testcase}" toDir="${report.test}" if="testcase"/>
- <classpath refid="classpath.test"/>
- </junit>
-
- <mkdir dir="${report.test}/html"/>
- <junitreport todir="${report.test}">
- <fileset dir="${report.test}">
- <include name="TEST-*.xml"/>
- </fileset>
- <report todir="${report.test}/html"/>
- </junitreport>
-
- <fail message="Failed JUnit test(s)" if="test.failed"/>
- </target>
-
- <!-- Has to continue on failure or error so report target can run. -->
- <!-- Not sure why need haltonerror="no" even if failures occur but no errors -->
- <target name="unit-tests" depends="compile-tests,jar" description="Run unit tests">
- <mkdir dir="${report.test}"/>
- <junit printsummary="yes" haltonerror="no" haltonfailure="no" failureProperty="test.failed" errorProperty="test.failed"
- fork="yes" timeout="${test.timeout}">
- <sysproperty key="atlantis.test.events" file="${test.events}"/>
- <formatter type="xml"/>
- <!-- If testcase is set, specified test will be run in "test" target. Otherwise run all of them. -->
- <batchtest toDir="${report.test}" unless="testcase">
- <fileset dir="${test.run}" includes="atlantis/**/*Test.class"/>
- </batchtest>
- <classpath refid="classpath.test"/>
- </junit>
- </target>
-
- <!-- Has to continue on failure or error so report target can run. -->
- <!-- Not sure why need haltonerror="no" even if failures occur but no errors -->
- <target name="gui-tests" depends="compile-tests,jar" description="Run GUI tests">
- <mkdir dir="${report.test}"/>
- <junit printsummary="yes" haltonerror="no" haltonfailure="no" failureProperty="test.failed" errorProperty="test.failed"
- fork="yes" timeout="${test.timeout}">
- <sysproperty key="atlantis.test.events" file="${test.events}"/>
- <formatter type="xml"/>
- <!-- If testcase is set, specified test will be run in "test" target. Otherwise run all of them. -->
- <batchtest toDir="${report.test}" unless="testcase">
- <fileset dir="${test.run}" includes="guitest/**/*Test.class">
- </fileset>
- </batchtest>
- <classpath refid="classpath.test"/>
- </junit>
- </target>
-
- <!-- compile-tests target: compile JUnit tests -->
- <target name="compile-tests" depends="compile"
- description="Compiles source files for all tests">
- <mkdir dir="${lib.run}/test"/>
- <copy todir="${lib.run}/test">
- <fileset dir="${lib.src}/test">
- <include name="*.jar"/>
- </fileset>
- </copy>
- <mkdir dir="${test.run}"/>
- <javac includeAntRuntime="false" srcdir="${test.src}" destdir="${test.run}" deprecation="on" verbose="no">
- <include name="**/*.java"/>
- <classpath>
- <fileset dir="${lib.run}">
- <include name="**/*.jar"/>
- </fileset>
- <fileset dir="${lib.test}">
- <include name="**/*.jar"/>
- </fileset>
- <pathelement path="${class.run}"/>
- </classpath>
- </javac>
- <path id="classpath.test">
- <fileset dir="${lib.run}">
- <include name="**/*.jar"/>
- </fileset>
- <fileset dir="${lib.test}">
- <include name="**/*.jar"/>
- </fileset>
- <pathelement path="${targetDir}/atlantis.jar"/>
- <pathelement path="${test.run}"/>
- </path>
- </target>
-
- <!-- usage target - - - - - - - - - - - - - - - - - - - - - - - - - - -->
- <target name="usage" description="Prints usage hint">
- <echo level="info" message="Usage:"/>
- <echo>targetDir - directory to build atlantis distribution in</echo>
- <echo>ant -DtargetDir=[target directory] [all|jar|javadoc|test|report|updateconfigs]</echo>
- <echo>and -DtargetDir=[target directory] -Dtestcase=[test-case class] test</echo>
- <echo>ant -DtargetDir=[target directory] [-Dcodebase="Webstart codebase URL"] [webstart|webstart-specificconfigs|webstart-all]</echo>
- </target>
-
- <!-- help target - - - - - - - - - - - - - - - - - - - - - - - - - - -->
- <target name="help" depends="usage" description="Prints usage hint"/>
-
-</project>
diff --git a/graphics/AtlantisJava/configuration/PSProlog.txt b/graphics/AtlantisJava/configuration/PSProlog.txt
deleted file mode 100755
index ca7483a2aeb..00000000000
--- a/graphics/AtlantisJava/configuration/PSProlog.txt
+++ /dev/null
@@ -1,156 +0,0 @@
-100 dict dup begin
-
-% Author: Charles Loomis
-
-% Redefinitions which save some space in the output file. These are also
-% the same as the PDF operators.
-/q {gsave} def
-/Q {grestore} def
-
-/n {newpath} def
-/m {moveto} def
-/l {lineto} def
-/c {curveto} def
-/h {closepath} def
-
-/re {4 -2 roll moveto
- dup 0 exch rlineto exch 0 rlineto
- neg 0 exch rlineto closepath} def
-
-/f {fill} def
-/f* {eofill} def
-/F {gsave vg&FC fill grestore} def
-/F* {gsave vg&FC eofill grestore} def
-
-/s {closepath stroke} def
-/S {stroke} def
-
-/b {closepath gsave vg&FC fill grestore
- gsave stroke grestore newpath} def
-/B {gsave vg&FC fill grestore gsave stroke grestore newpath} def
-/b* {closepath gsave vg&FC eofill grestore
- gsave stroke grestore newpath} def
-/B* {gsave vg&FC eofill grestore gsave stroke grestore newpath} def
-
-/g {1 array astore /vg&fcolor exch def} def
-/G {setgray} def
-/k {4 array astore /vg&fcolor exch def} def
-/K {setcmykcolor} def
-/rg {3 array astore /vg&fcolor exch def} def
-/RG {setrgbcolor} def
-
-% Initialize the fill color.
-0 0 0 rg
-
-/vg&FC {mark vg&fcolor aload pop
- counttomark 1 eq {G} if
- counttomark 3 eq {RG} if
- counttomark 4 eq {K} if
- cleartomark } def
-
-/vg&DFC {/vg&fcolor exch def} def
-
-/vg&C {mark exch aload pop
- counttomark 1 eq {G} if
- counttomark 3 eq {RG} if
- counttomark 4 eq {K} if
- cleartomark } def
-
-/w {setlinewidth} def
-/j {setlinejoin} def
-/J {setlinecap} def
-/M {setmiterlimit} def
-/d {setdash} def
-/i {setflat} def
-
-/W {clip} def
-/W* {eoclip} def
-
-% Setup the default graphics state.
-% (black; 1 pt. linewidth; miter join; butt-ends; solid)
-/defaultGraphicsState {0 g 1 w 0 j 0 J [] 0 d} def
-
-% Emulation of the rectangle operators for PostScript implementations
-% which do not implement all Level 2 features. This is an INCOMPLETE
-% emulation; only the "x y width height rect..." form is emulated.
-/*rf {gsave newpath re fill grestore} def
-/*rs {gsave newpath re stroke grestore} def
-/*rc {newpath re clip} def
-/rf /rectfill where {pop /rectfill}{/*rf} ifelse load def
-/rs /rectstroke where {pop /rectstroke}{/*rs} ifelse load def
-/rc /rectclip where {pop /rectclip}{/*rc} ifelse load def
-
-% Emulation of the selectfont operator. This includes a 20% increase in
-% the fontsize which is necessary to get sizes similar to the Java fonts.
-/*sf {exch findfont exch
- dup type /arraytype eq {makefont}{scalefont} ifelse setfont} bind def
-/sf /selectfont where {pop {1.2 mul selectfont}}{{1.2 mul *sf}} ifelse def
-
-% Initialize variables for safety.
-/delta 0 def
-/xv 0 def /yv 0 def /width 0 def /height 0 def
-
-% Initialize to portrait A4 page.
-/pw 595 def /ph 842 def /po true def /ftp false def
-
-% Initialize margins to 20 points.
-/ml 20 def /mr 20 def /mt 20 def /mb 20 def
-
-% set page size (usage: <page width><page height> setpagesize)
-/setpagesize {/ph exch def /pw exch def} def
-
-% set page orientation (usage: portrait or landscape)
-/portrait {/po true def} def
-/landscape {/po false def} def
-
-% force natural size for image (usage: naturalsize)
-/naturalsize {/ftp false def} def
-
-% resize image to fill page (usage: fittopage)
-/fittopage {/ftp true def} def
-
-% set margins of the page (usage: <left><bottom><top><right> setmargins)
-/setmargins {/mr exch def /mt exch def /mb exch def /ml exch def} def
-
-% set the graphic's size (usage: <width><height> setsize)
-/setsize {/gh exch def /gw exch def} def
-
-% set the graphic's origin (usage: <x0><y0> setorigin)
-/setorigin {/gy exch def /gx exch def} def
-
-% calculate image center
-/imagecenter {pw ml sub mr sub 2 div ml add
- ph mt sub mb sub 2 div mb add} def
-
-% calculate the necessary scaling
-/imagescale {po {gw}{gh} ifelse pw ml sub mr sub div
- po {gh}{gw} ifelse ph mt sub mb sub div
- 2 copy lt {exch} if pop
- ftp not {1 2 copy lt {exch} if pop} if
- 1 exch div /sfactor exch def
- /gw gw sfactor mul def /gh gh sfactor mul def} def
-
-% calculate image origin
-/imageorigin {pw ml sub mr sub 2 div ml add
- po {gw}{gh} ifelse 2 div sub
- ph mt sub mb sub 2 div mb add
- po {gh}{gw} ifelse 2 div po {add}{sub} ifelse} def
-
-% calculate the clipping origin
-/cliporigin {pw ml sub mr sub 2 div ml add
- po {gw}{gh} ifelse 2 div sub floor
- ph mt sub mb sub 2 div mb add
- po {gh}{gw} ifelse 2 div sub floor} def
-
-% Set the clipping region to the bounding box.
-/cliptobounds {cliporigin po {gw}{gh} ifelse 1 add
- po {gh}{gw} ifelse 1 add rc} def
-
-% set the base transformation matrix (usage: setbasematrix)
-/setbasematrix {imageorigin translate
- po {0}{90} ifelse rotate
- sfactor sfactor neg scale
- /defaultmatrix matrix currentmatrix def} def
-
-
-
diff --git a/graphics/AtlantisJava/configuration/colormap.xml b/graphics/AtlantisJava/configuration/colormap.xml
deleted file mode 100755
index 1160b07c23b..00000000000
--- a/graphics/AtlantisJava/configuration/colormap.xml
+++ /dev/null
@@ -1,369 +0,0 @@
-<?xml version="1.0"?>
-<!DOCTYPE colormap [
- <!ELEMENT colormap (Mapping*)>
- <!ATTLIST colormap
- numMaps CDATA #REQUIRED
- numColors CDATA #REQUIRED>
- <!ELEMENT Mapping EMPTY>
- <!ATTLIST Mapping
- map CDATA #REQUIRED
- index CDATA #REQUIRED
- r CDATA #REQUIRED
- g CDATA #REQUIRED
- b CDATA #REQUIRED>
-]>
-
-<colormap numMaps="9" numColors="29" >
-<!-- map 0 - Default(1) -->
- <!-- white -->
- <Mapping map="0" index="0" r="176" g="176" b="176"/>
- <!-- geometry -->
- <Mapping map="0" index="1" r="58" g="58" b="58"/>
- <Mapping map="0" index="2" r="32" g="32" b="32"/>
- <Mapping map="0" index="3" r="205" g="92" b="92"/>
- <Mapping map="0" index="4" r="55" g="101" b="140"/>
- <Mapping map="0" index="5" r="130" g="200" b="130"/>
- <Mapping map="0" index="6" r="70" g="130" b="180"/>
- <Mapping map="0" index="7" r="200" g="200" b="200"/>
- <!-- background -->
- <Mapping map="0" index="8" r="255" g="255" b="255"/>
- <!-- frames -->
- <Mapping map="0" index="9" r="189" g="34" b="50"/>
- <Mapping map="0" index="10" r="180" g="180" b="81"/>
- <Mapping map="0" index="11" r="33" g="182" b="92"/>
- <Mapping map="0" index="12" r="89" g="206" b="223"/>
- <Mapping map="0" index="13" r="140" g="40" b="140"/>
- <!-- grey -->
- <Mapping map="0" index="14" r="153" g="153" b="153"/>
- <!-- cells -->
- <Mapping map="0" index="15" r="125" g="0" b="0"/>
- <Mapping map="0" index="16" r="255" g="255" b="128"/>
- <Mapping map="0" index="17" r="0" g="125" b="0"/>
- <Mapping map="0" index="18" r="181" g="229" b="251"/>
- <Mapping map="0" index="19" r="255" g="128" b="255"/>
- <!-- red -->
- <Mapping map="0" index="20" r="255" g="0" b="0"/>
- <!-- green -->
- <Mapping map="0" index="21" r="0" g="255" b="0"/>
- <!-- blue -->
- <Mapping map="0" index="22" r="0" g="0" b="255"/>
- <!-- yellow -->
- <Mapping map="0" index="23" r="255" g="255" b="0"/>
- <!-- magenta -->
- <Mapping map="0" index="24" r="255" g="0" b="255"/>
- <!-- cyan -->
- <Mapping map="0" index="25" r="0" g="255" b="255"/>
- <!-- black -->
- <Mapping map="0" index="26" r="0" g="0" b="0"/>
- <!-- orange -->
- <Mapping map="0" index="27" r="255" g="115" b="0"/>
- <!-- cornflower blue -->
- <Mapping map="0" index="28" r="135" g="206" b="250"/>
-<!-- map 1 - Default(2) -->
- <!-- white -->
- <Mapping map="1" index="0" r="176" g="176" b="176"/>
- <!-- geometry -->
- <Mapping map="1" index="1" r="58" g="58" b="58"/>
- <Mapping map="1" index="2" r="32" g="32" b="32"/>
- <Mapping map="1" index="3" r="254" g="102" b="0"/>
- <Mapping map="1" index="4" r="0" g="24" b="71"/>
- <Mapping map="1" index="5" r="130" g="200" b="130"/>
- <Mapping map="1" index="6" r="0" g="51" b="153"/>
- <Mapping map="1" index="7" r="200" g="200" b="200"/>
- <!-- background -->
- <Mapping map="1" index="8" r="255" g="255" b="255"/>
- <!-- frames -->
- <Mapping map="1" index="9" r="189" g="34" b="50"/>
- <Mapping map="1" index="10" r="180" g="180" b="81"/>
- <Mapping map="1" index="11" r="33" g="182" b="92"/>
- <Mapping map="1" index="12" r="89" g="206" b="223"/>
- <Mapping map="1" index="13" r="140" g="40" b="140"/>
- <!-- grey -->
- <Mapping map="1" index="14" r="153" g="153" b="153"/>
- <!-- cells -->
- <Mapping map="1" index="15" r="185" g="0" b="0"/>
- <Mapping map="1" index="16" r="255" g="255" b="128"/>
- <Mapping map="1" index="17" r="0" g="125" b="0"/>
- <Mapping map="1" index="18" r="181" g="229" b="251"/>
- <Mapping map="1" index="19" r="255" g="128" b="255"/>
- <!-- red -->
- <Mapping map="1" index="20" r="255" g="0" b="0"/>
- <!-- green -->
- <Mapping map="1" index="21" r="0" g="255" b="0"/>
- <!-- blue -->
- <Mapping map="1" index="22" r="0" g="0" b="255"/>
- <!-- yellow -->
- <Mapping map="1" index="23" r="255" g="255" b="0"/>
- <!-- magenta -->
- <Mapping map="1" index="24" r="255" g="0" b="255"/>
- <!-- cyan -->
- <Mapping map="1" index="25" r="0" g="255" b="255"/>
- <!-- black -->
- <Mapping map="1" index="26" r="0" g="0" b="0"/>
- <!-- orange -->
- <Mapping map="1" index="27" r="255" g="170" b="0"/>
- <!-- cornflower blue -->
- <Mapping map="1" index="28" r="0" g="102" b="255"/>
-<!-- map 2 - Default(M4+M5) -->
- <!-- white -->
- <Mapping map="2" index="0" r="255" g="255" b="255"/>
- <!-- geometry -->
- <Mapping map="2" index="1" r="40" g="0" b="0"/>
- <Mapping map="2" index="2" r="0" g="35" b="0"/>
- <Mapping map="2" index="3" r="132" g="39" b="32"/>
- <Mapping map="2" index="4" r="138" g="138" b="68"/>
- <Mapping map="2" index="5" r="98" g="134" b="122"/>
- <Mapping map="2" index="6" r="78" g="139" b="170"/>
- <Mapping map="2" index="7" r="97" g="65" b="97"/>
- <!-- background -->
- <Mapping map="2" index="8" r="44" g="47" b="50"/>
- <!-- frames -->
- <Mapping map="2" index="9" r="189" g="34" b="50"/>
- <Mapping map="2" index="10" r="180" g="180" b="81"/>
- <Mapping map="2" index="11" r="33" g="182" b="92"/>
- <Mapping map="2" index="12" r="89" g="206" b="223"/>
- <Mapping map="2" index="13" r="140" g="40" b="140"/>
- <!-- grey -->
- <Mapping map="2" index="14" r="153" g="153" b="153"/>
- <!-- cells -->
- <Mapping map="2" index="15" r="245" g="135" b="138"/>
- <Mapping map="2" index="16" r="255" g="255" b="128"/>
- <Mapping map="2" index="17" r="123" g="212" b="194"/>
- <Mapping map="2" index="18" r="181" g="229" b="251"/>
- <Mapping map="2" index="19" r="255" g="128" b="255"/>
- <!-- red -->
- <Mapping map="2" index="20" r="255" g="0" b="0"/>
- <!-- green -->
- <Mapping map="2" index="21" r="0" g="255" b="0"/>
- <!-- blue -->
- <Mapping map="2" index="22" r="0" g="0" b="255"/>
- <!-- yellow -->
- <Mapping map="2" index="23" r="255" g="255" b="0"/>
- <!-- magenta -->
- <Mapping map="2" index="24" r="255" g="0" b="255"/>
- <!-- cyan -->
- <Mapping map="2" index="25" r="0" g="255" b="255"/>
- <!-- black -->
- <Mapping map="2" index="26" r="0" g="0" b="0"/>
- <!-- orange -->
- <Mapping map="2" index="27" r="255" g="115" b="0"/>
- <!-- cornflower blue -->
- <Mapping map="2" index="28" r="102" g="128" b="255"/>
-<!-- map 3 - Gray detector -->
- <!-- white -->
- <Mapping map="3" index="0" r="255" g="255" b="255"/>
- <!-- geometry -->
- <Mapping map="3" index="1" r="0" g="0" b="0"/>
- <Mapping map="3" index="2" r="0" g="0" b="0"/>
- <Mapping map="3" index="3" r="32" g="32" b="32"/>
- <Mapping map="3" index="4" r="80" g="80" b="80"/>
- <Mapping map="3" index="5" r="16" g="16" b="16"/>
- <Mapping map="3" index="6" r="48" g="48" b="48"/>
- <Mapping map="3" index="7" r="64" g="64" b="64"/>
- <!-- background -->
- <Mapping map="3" index="8" r="112" g="112" b="112"/>
- <!-- frames -->
- <Mapping map="3" index="9" r="189" g="34" b="50"/>
- <Mapping map="3" index="10" r="180" g="180" b="81"/>
- <Mapping map="3" index="11" r="33" g="182" b="92"/>
- <Mapping map="3" index="12" r="89" g="206" b="223"/>
- <Mapping map="3" index="13" r="140" g="40" b="140"/>
- <!-- grey -->
- <Mapping map="3" index="14" r="153" g="153" b="153"/>
- <!-- cells -->
- <Mapping map="3" index="15" r="245" g="135" b="138"/>
- <Mapping map="3" index="16" r="255" g="255" b="128"/>
- <Mapping map="3" index="17" r="123" g="212" b="194"/>
- <Mapping map="3" index="18" r="181" g="229" b="251"/>
- <Mapping map="3" index="19" r="255" g="128" b="255"/>
- <!-- red -->
- <Mapping map="3" index="20" r="255" g="0" b="0"/>
- <!-- green -->
- <Mapping map="3" index="21" r="0" g="255" b="0"/>
- <!-- blue -->
- <Mapping map="3" index="22" r="0" g="0" b="255"/>
- <!-- yellow -->
- <Mapping map="3" index="23" r="255" g="255" b="0"/>
- <!-- magenta -->
- <Mapping map="3" index="24" r="255" g="0" b="255"/>
- <!-- cyan -->
- <Mapping map="3" index="25" r="0" g="255" b="255"/>
- <!-- black -->
- <Mapping map="3" index="26" r="0" g="0" b="0"/>
- <!-- orange -->
- <Mapping map="3" index="27" r="255" g="115" b="0"/>
- <!-- cornflower blue -->
- <Mapping map="3" index="28" r="102" g="128" b="255"/>
-<!-- map 4 - Original -->
- <!-- white -->
- <Mapping map="4" index="0" r="255" g="255" b="255"/>
- <!-- geometry -->
- <Mapping map="4" index="1" r="0" g="0" b="0"/>
- <Mapping map="4" index="2" r="0" g="0" b="0"/>
- <Mapping map="4" index="3" r="255" g="0" b="0"/>
- <Mapping map="4" index="4" r="0" g="0" b="255"/>
- <Mapping map="4" index="5" r="0" g="255" b="0"/>
- <Mapping map="4" index="6" r="0" g="0" b="0"/>
- <Mapping map="4" index="7" r="255" g="0" b="255"/>
- <!-- background -->
- <Mapping map="4" index="8" r="0" g="204" b="255"/>
- <!-- frames -->
- <Mapping map="4" index="9" r="189" g="34" b="50"/>
- <Mapping map="4" index="10" r="180" g="180" b="81"/>
- <Mapping map="4" index="11" r="33" g="182" b="92"/>
- <Mapping map="4" index="12" r="89" g="206" b="223"/>
- <Mapping map="4" index="13" r="140" g="40" b="140"/>
- <!-- grey -->
- <Mapping map="4" index="14" r="153" g="153" b="153"/>
- <!-- cells -->
- <Mapping map="4" index="15" r="245" g="135" b="138"/>
- <Mapping map="4" index="16" r="255" g="255" b="128"/>
- <Mapping map="4" index="17" r="123" g="212" b="194"/>
- <Mapping map="4" index="18" r="181" g="229" b="251"/>
- <Mapping map="4" index="19" r="255" g="128" b="255"/>
- <!-- red -->
- <Mapping map="4" index="20" r="255" g="0" b="0"/>
- <!-- green -->
- <Mapping map="4" index="21" r="0" g="255" b="0"/>
- <!-- blue -->
- <Mapping map="4" index="22" r="0" g="0" b="255"/>
- <!-- yellow -->
- <Mapping map="4" index="23" r="255" g="255" b="0"/>
- <!-- magenta -->
- <Mapping map="4" index="24" r="255" g="0" b="255"/>
- <!-- cyan -->
- <Mapping map="4" index="25" r="0" g="255" b="255"/>
- <!-- black -->
- <Mapping map="4" index="26" r="0" g="0" b="0"/>
- <!-- orange -->
- <Mapping map="4" index="27" r="255" g="115" b="0"/>
- <!-- cornflower blue -->
- <Mapping map="4" index="28" r="102" g="128" b="255"/>
-<!-- map 5 - Grey -->
- <!-- white -->
- <Mapping map="5" index="0" r="255" g="255" b="255"/>
- <Mapping map="5" index="1" r="255" g="255" b="255"/>
- <Mapping map="5" index="2" r="255" g="255" b="255"/>
- <Mapping map="5" index="3" r="255" g="255" b="255"/>
- <Mapping map="5" index="4" r="255" g="255" b="255"/>
- <Mapping map="5" index="5" r="255" g="255" b="255"/>
- <Mapping map="5" index="6" r="255" g="255" b="255"/>
- <Mapping map="5" index="7" r="255" g="255" b="255"/>
- <!-- grey -->
- <Mapping map="5" index="8" r="204" g="204" b="204"/>
- <!-- black -->
- <Mapping map="5" index="9" r="0" g="0" b="0"/>
- <Mapping map="5" index="10" r="0" g="0" b="0"/>
- <Mapping map="5" index="11" r="0" g="0" b="0"/>
- <Mapping map="5" index="12" r="0" g="0" b="0"/>
- <Mapping map="5" index="13" r="0" g="0" b="0"/>
- <Mapping map="5" index="14" r="0" g="0" b="0"/>
- <Mapping map="5" index="15" r="0" g="0" b="0"/>
- <Mapping map="5" index="16" r="0" g="0" b="0"/>
- <Mapping map="5" index="17" r="0" g="0" b="0"/>
- <Mapping map="5" index="18" r="0" g="0" b="0"/>
- <Mapping map="5" index="19" r="0" g="0" b="0"/>
- <Mapping map="5" index="20" r="0" g="0" b="0"/>
- <Mapping map="5" index="21" r="0" g="0" b="0"/>
- <Mapping map="5" index="22" r="0" g="0" b="0"/>
- <Mapping map="5" index="23" r="0" g="0" b="0"/>
- <Mapping map="5" index="24" r="0" g="0" b="0"/>
- <Mapping map="5" index="25" r="0" g="0" b="0"/>
- <Mapping map="5" index="26" r="0" g="0" b="0"/>
- <Mapping map="5" index="27" r="0" g="0" b="0"/>
- <Mapping map="5" index="28" r="0" g="0" b="0"/>
-<!-- map 6 - BW -->
- <!-- white -->
- <Mapping map="6" index="0" r="255" g="255" b="255"/>
- <Mapping map="6" index="1" r="255" g="255" b="255"/>
- <Mapping map="6" index="2" r="255" g="255" b="255"/>
- <Mapping map="6" index="3" r="255" g="255" b="255"/>
- <Mapping map="6" index="4" r="255" g="255" b="255"/>
- <Mapping map="6" index="5" r="255" g="255" b="255"/>
- <Mapping map="6" index="6" r="255" g="255" b="255"/>
- <Mapping map="6" index="7" r="255" g="255" b="255"/>
- <Mapping map="6" index="8" r="255" g="255" b="255"/>
- <!-- black -->
- <Mapping map="6" index="9" r="0" g="0" b="0"/>
- <Mapping map="6" index="10" r="0" g="0" b="0"/>
- <Mapping map="6" index="11" r="0" g="0" b="0"/>
- <Mapping map="6" index="12" r="0" g="0" b="0"/>
- <Mapping map="6" index="13" r="0" g="0" b="0"/>
- <Mapping map="6" index="14" r="0" g="0" b="0"/>
- <Mapping map="6" index="15" r="0" g="0" b="0"/>
- <Mapping map="6" index="16" r="0" g="0" b="0"/>
- <Mapping map="6" index="17" r="0" g="0" b="0"/>
- <Mapping map="6" index="18" r="0" g="0" b="0"/>
- <Mapping map="6" index="19" r="0" g="0" b="0"/>
- <Mapping map="6" index="20" r="0" g="0" b="0"/>
- <Mapping map="6" index="21" r="0" g="0" b="0"/>
- <Mapping map="6" index="22" r="0" g="0" b="0"/>
- <Mapping map="6" index="23" r="0" g="0" b="0"/>
- <Mapping map="6" index="24" r="0" g="0" b="0"/>
- <Mapping map="6" index="25" r="0" g="0" b="0"/>
- <Mapping map="6" index="26" r="0" g="0" b="0"/>
- <Mapping map="6" index="27" r="0" g="0" b="0"/>
- <Mapping map="6" index="28" r="0" g="0" b="0"/>
-<!-- map 7 - HITCOL -->
- <Mapping map="7" index="0" r="0" g="0" b="85"/>
- <Mapping map="7" index="1" r="0" g="0" b="255"/>
- <Mapping map="7" index="2" r="85" g="85" b="170"/>
- <Mapping map="7" index="3" r="0" g="170" b="255"/>
- <Mapping map="7" index="4" r="0" g="255" b="255"/>
- <Mapping map="7" index="5" r="0" g="85" b="85"/>
- <Mapping map="7" index="6" r="0" g="85" b="0"/>
- <Mapping map="7" index="7" r="0" g="170" b="0"/>
- <Mapping map="7" index="8" r="0" g="255" b="0"/>
- <Mapping map="7" index="9" r="170" g="255" b="0"/>
- <Mapping map="7" index="10" r="255" g="255" b="0"/>
- <Mapping map="7" index="11" r="255" g="170" b="0"/>
- <Mapping map="7" index="12" r="170" g="85" b="0"/>
- <Mapping map="7" index="13" r="255" g="85" b="85"/>
- <Mapping map="7" index="14" r="255" g="0" b="0"/>
- <Mapping map="7" index="15" r="170" g="0" b="0"/>
- <Mapping map="7" index="16" r="85" g="0" b="0"/>
- <!-- not used -->
- <Mapping map="7" index="17" r="0" g="0" b="0"/>
- <Mapping map="7" index="18" r="0" g="0" b="0"/>
- <Mapping map="7" index="19" r="0" g="0" b="0"/>
- <Mapping map="7" index="20" r="0" g="0" b="0"/>
- <Mapping map="7" index="21" r="0" g="0" b="0"/>
- <Mapping map="7" index="22" r="0" g="0" b="0"/>
- <Mapping map="7" index="23" r="0" g="0" b="0"/>
- <Mapping map="7" index="24" r="0" g="0" b="0"/>
- <Mapping map="7" index="25" r="0" g="0" b="0"/>
- <Mapping map="7" index="26" r="0" g="0" b="0"/>
- <Mapping map="7" index="27" r="0" g="0" b="0"/>
- <Mapping map="7" index="28" r="0" g="0" b="0"/>
-<!-- map 8 - GREY HITCOL -->
- <Mapping map="8" index="0" r="255" g="255" b="255"/>
- <Mapping map="8" index="1" r="240" g="240" b="240"/>
- <Mapping map="8" index="2" r="224" g="224" b="224"/>
- <Mapping map="8" index="3" r="208" g="208" b="208"/>
- <Mapping map="8" index="4" r="192" g="192" b="192"/>
- <Mapping map="8" index="5" r="176" g="176" b="176"/>
- <Mapping map="8" index="6" r="160" g="160" b="160"/>
- <Mapping map="8" index="7" r="144" g="144" b="144"/>
- <Mapping map="8" index="8" r="128" g="128" b="128"/>
- <Mapping map="8" index="9" r="112" g="112" b="112"/>
- <Mapping map="8" index="10" r="96" g="96" b="96"/>
- <Mapping map="8" index="11" r="80" g="80" b="80"/>
- <Mapping map="8" index="12" r="64" g="64" b="64"/>
- <Mapping map="8" index="13" r="48" g="48" b="48"/>
- <Mapping map="8" index="14" r="32" g="32" b="32"/>
- <Mapping map="8" index="15" r="16" g="16" b="16"/>
- <!-- not used -->
- <Mapping map="8" index="16" r="0" g="0" b="0"/>
- <Mapping map="8" index="17" r="0" g="0" b="0"/>
- <Mapping map="8" index="18" r="0" g="0" b="0"/>
- <Mapping map="8" index="19" r="0" g="0" b="0"/>
- <Mapping map="8" index="20" r="0" g="0" b="0"/>
- <Mapping map="8" index="21" r="0" g="0" b="0"/>
- <Mapping map="8" index="22" r="0" g="0" b="0"/>
- <Mapping map="8" index="23" r="0" g="0" b="0"/>
- <Mapping map="8" index="24" r="0" g="0" b="0"/>
- <Mapping map="8" index="25" r="0" g="0" b="0"/>
- <Mapping map="8" index="26" r="0" g="0" b="0"/>
- <Mapping map="8" index="27" r="0" g="0" b="0"/>
- <Mapping map="8" index="28" r="0" g="0" b="0"/>
-</colormap>
diff --git a/graphics/AtlantisJava/configuration/config.dtd b/graphics/AtlantisJava/configuration/config.dtd
deleted file mode 100644
index 189f117e091..00000000000
--- a/graphics/AtlantisJava/configuration/config.dtd
+++ /dev/null
@@ -1,169 +0,0 @@
-<!ELEMENT AtlantisConfiguration (Initialization, Parameters,ParameterDifferences*, WindowCorners*)>
-
-<!ELEMENT Initialization (Interactions, Canvas)>
-
-<!ELEMENT Interactions (Panel*, InteractionControl+)>
-
-<!ELEMENT InteractionControl (Panel*)>
- <!ATTLIST InteractionControl
- projectionName CDATA #REQUIRED
- availableInDemoMode CDATA "YES"
- defaultInDemoMode CDATA "NO" >
-
-<!ELEMENT Panel EMPTY>
- <!ATTLIST Panel
- screenName CDATA #REQUIRED
- fileName CDATA #REQUIRED
- toolTip CDATA "">
-
-<!ELEMENT Canvas (UsedWindow+, Layout+)>
- <!ATTLIST Canvas
- startupLayout CDATA #REQUIRED
- aspectRatio CDATA #REQUIRED>
-
-<!ELEMENT UsedWindow EMPTY>
- <!ATTLIST UsedWindow
- name CDATA #REQUIRED
- projection CDATA "EP"
- group CDATA "Data">
-
-<!ELEMENT Layout (Window+, Page+)>
- <!ATTLIST Layout
- name CDATA #REQUIRED
- startup CDATA #REQUIRED
- startupWindow CDATA #REQUIRED>
-
-<!ELEMENT Window EMPTY>
- <!ATTLIST Window
- name CDATA #REQUIRED
- hPos CDATA #REQUIRED
- vPos CDATA #REQUIRED
- width CDATA #REQUIRED
- height CDATA #REQUIRED>
-
-<!ELEMENT Page EMPTY>
- <!ATTLIST Page
- name CDATA #REQUIRED
- content CDATA #REQUIRED>
-
-<!ELEMENT Parameters (SuperGroup*)>
- <!ATTLIST Parameters
- userLevel CDATA #REQUIRED>
-
-<!ELEMENT SuperGroup (Group*)>
- <!ATTLIST SuperGroup
- name CDATA #REQUIRED
- toolTip CDATA ""
- userLevel CDATA "0">
-
-<!ELEMENT Group (Command*,((ENUM)*, (SENUM)*, (ICUT)*, (SICUT)*, (FCUT)*, (SFCUT)*, (INT)*, (SINT)*,(LINT)*, (SLINT)*, (FLOAT)*, (SFLOAT)*, (COLOR)*, (SCOLOR)*, (StatusRoot)*, (STATUS)*, (LINK)*)* )>
- <!ATTLIST Group
- name CDATA #REQUIRED
- sname CDATA ""
- guiUsage (NO_USE|TABLE|PROJECTION|BRAIN_TEST) "NO_USE"
- scope (LOCAL|GLOBAL) "GLOBAL"
- userLevel CDATA "0"
- toolTip CDATA "">
-
-<!ELEMENT Command EMPTY>
- <!ATTLIST Command
- name CDATA #REQUIRED
- command CDATA #REQUIRED
- ul CDATA "0"
- toolTip CDATA "">
-
-<!ENTITY none "0">
-
-<!ELEMENT ENUM EMPTY> <!ATTLIST ENUM fn CDATA #REQUIRED sn CDATA "" va CDATA #REQUIRED pv CDATA "-inf : inf" tip CDATA "" ul CDATA "0" scope CDATA "">
-<!ELEMENT SENUM EMPTY> <!ATTLIST SENUM fn CDATA #REQUIRED sn CDATA "" va CDATA #REQUIRED pv CDATA "-inf : inf" st (ON|OFF) #REQUIRED tip CDATA "" ul CDATA "0" scope CDATA "">
-<!ELEMENT ICUT EMPTY> <!ATTLIST ICUT fn CDATA #REQUIRED sn CDATA "" va CDATA #REQUIRED pv CDATA "-inf : inf" isMod (YES|NO) "NO" op CDATA #REQUIRED dop CDATA "" tip CDATA "" ul CDATA "0" scope CDATA "" u CDATA "&none;">
-<!ELEMENT SICUT EMPTY> <!ATTLIST SICUT fn CDATA #REQUIRED sn CDATA "" va CDATA #REQUIRED pv CDATA "-inf : inf" st (ON|OFF) #REQUIRED isMod (YES|NO) "NO" op CDATA #REQUIRED dop CDATA "" tip CDATA "" ul CDATA "0" scope CDATA "" u CDATA "&none;">
-<!ELEMENT FCUT EMPTY> <!ATTLIST FCUT fn CDATA #REQUIRED sn CDATA "" va CDATA #REQUIRED pv CDATA "-inf : inf" isMod (YES|NO) "NO" op CDATA #REQUIRED dop CDATA "" tip CDATA "" ul CDATA "0" scope CDATA "" u CDATA "&none;">
-<!ELEMENT SFCUT EMPTY> <!ATTLIST SFCUT fn CDATA #REQUIRED sn CDATA "" va CDATA #REQUIRED pv CDATA "-inf : inf" st (ON|OFF) #REQUIRED isMod (YES|NO) "NO" op CDATA #REQUIRED dop CDATA "" tip CDATA "" ul CDATA "0" scope CDATA "" u CDATA "&none;">
-<!ELEMENT INT EMPTY> <!ATTLIST INT fn CDATA #REQUIRED sn CDATA "" va CDATA #REQUIRED pv CDATA "-inf : inf" isMod (YES|NO) "NO" tip CDATA "" ul CDATA "0" scope CDATA "" u CDATA "&none;">
-<!ELEMENT SINT EMPTY> <!ATTLIST SINT fn CDATA #REQUIRED sn CDATA "" va CDATA #REQUIRED pv CDATA "-inf : inf" st (ON|OFF) #REQUIRED isMod (YES|NO) "NO" tip CDATA "" ul CDATA "0" scope CDATA "" u CDATA "&none;">
-<!ELEMENT FLOAT EMPTY> <!ATTLIST FLOAT fn CDATA #REQUIRED sn CDATA "" va CDATA #REQUIRED pv CDATA "-inf : inf" isMod (YES|NO) "NO" tip CDATA "" ul CDATA "0" scope CDATA "" u CDATA "&none;">
-<!ELEMENT SFLOAT EMPTY> <!ATTLIST SFLOAT fn CDATA #REQUIRED sn CDATA "" va CDATA #REQUIRED pv CDATA "-inf : inf" st (ON|OFF) #REQUIRED isMod (YES|NO) "NO" tip CDATA "" ul CDATA "0" scope CDATA "" u CDATA "&none;">
-<!ELEMENT LINT EMPTY> <!ATTLIST LINT fn CDATA #REQUIRED sn CDATA "" va CDATA #REQUIRED pv CDATA "-inf : inf" tip CDATA "" ul CDATA "0" scope CDATA "" u CDATA "&none;">
-<!ELEMENT SLINT EMPTY> <!ATTLIST SLINT fn CDATA #REQUIRED sn CDATA "" va CDATA #REQUIRED pv CDATA "-inf : inf" st (ON|OFF) #REQUIRED tip CDATA "" ul CDATA "0" scope CDATA "" u CDATA "&none;">
-<!ELEMENT COLOR EMPTY> <!ATTLIST COLOR fn CDATA #REQUIRED sn CDATA "" va CDATA #REQUIRED pv CDATA "-inf : inf" tip CDATA "" ul CDATA "0" scope CDATA "">
-<!ELEMENT SCOLOR EMPTY> <!ATTLIST SCOLOR fn CDATA #REQUIRED sn CDATA "" va CDATA #REQUIRED pv CDATA "-inf : inf" st (ON|OFF) #REQUIRED tip CDATA "" ul CDATA "0" scope CDATA "">
-<!ELEMENT StatusRoot (StatusGroup*, STATUS*)> <!ATTLIST StatusRoot fn CDATA #REQUIRED sn CDATA "" st (ON|OFF) "OFF" tip CDATA "" ul CDATA "0" scope CDATA "">
-<!ELEMENT StatusGroup (StatusGroup*, STATUS*)> <!ATTLIST StatusGroup fn CDATA #REQUIRED sn CDATA "" st (ON|OFF) "OFF" tip CDATA "" ul CDATA "0" scope CDATA "">
-<!ELEMENT STATUS EMPTY> <!ATTLIST STATUS fn CDATA #REQUIRED sn CDATA "" st (ON|OFF) #REQUIRED tip CDATA "" ul CDATA "0" scope CDATA "">
-<!ELEMENT LINK EMPTY> <!ATTLIST LINK to CDATA #REQUIRED>
-
-<!ELEMENT ParameterDifferences (DIFFERENCE*)>
-
-<!ELEMENT DIFFERENCE EMPTY>
- <!ATTLIST DIFFERENCE
- group CDATA #REQUIRED
- name CDATA #REQUIRED
- windowName CDATA "*"
- va CDATA ""
- st CDATA ""
- op CDATA "">
-
-<!ELEMENT WindowCorners (CORNERS*)>
-
-<!ELEMENT CORNERS EMPTY>
- <!ATTLIST CORNERS
- windowName CDATA #REQUIRED
- x0 CDATA #REQUIRED
- y0 CDATA #REQUIRED
- x1 CDATA #REQUIRED
- y1 CDATA #REQUIRED
- x2 CDATA #REQUIRED
- y2 CDATA #REQUIRED>
-
-<!ENTITY length "1">
-<!ENTITY energy "2">
-<!ENTITY energyMEV "3">
-
-<!ENTITY user "0">
-<!ENTITY superuser "1">
-<!ENTITY debug "3">
-
-<!ENTITY assocCutOptions "All=0, Connected=1, Unconnected=2">
-<!ENTITY drawTo "Pixels = 0, Silicon Strips = 1, TRT_DriftCircle=2, LAr = 3, TILE = 4, Muon System = 5">
-<!ENTITY colorFn "Constant = 0, Simulated Track = 1, Reconstructed Track = 2, SubDetector = 3, Track Segment = 4">
-<!ENTITY colorFnTRT "Constant = 0, Simulated Track = 1, Reconstructed Track = 2, SubDetector = 3, Track Segment = 4, isOutlier = 5, driftSign = 6, threshold = 7">
-<!ENTITY colorFnMTr "Constant = 0, Index = 1, Pt = 2">
-<!ENTITY colorFnCal "Constant = 0, SubDetector = 1, Cluster = 2, Layer = 3, Energy = 4, Jet = 5, ECAL/HCAL = 6, Time = 7">
-<!ENTITY colorFnS3D "Constant = 0, Simulated Track = 1, Reconstructed Track = 2, SubDetector = 3, Group = 4, Layer = 5">
-<!ENTITY colorFnTrigS3D "Constant = 0, Simulated Track = 1, Reconstructed Track = 2, SubDetector = 3, Layer = 4">
-<!ENTITY colorFnSiCluster "Constant = 0, Simulated Track = 1, Reconstructed Track = 2, SubDetector = 3, Layer = 4, Orientation=5">
-<!ENTITY colorFnPixCluster "Constant = 0, Simulated Track = 1, Reconstructed Track = 2, SubDetector = 3, Layer = 4, Orientation=5, dE/dx=6">
-<!ENTITY colorFnSTr "Constant = 0, Index = 1, Pt = 2, Particle Type = 3, Origin Vertex = 4">
-<!ENTITY colorFnRTr "Constant = 0, Index = 1, Pt = 2, Collection = 3, Simulated Track = 4, RecVertex = 5, Objects = 7">
-<!ENTITY colorFnBasic "Constant = 0, Index = 1">
-<!ENTITY colorFnBasicVtx "Constant = 0, Index = 1 , VertexType = 2">
-<!ENTITY colorFnBasicCollection "Constant = 0, Index = 1, Collection = 2">
-<!ENTITY colorFnBasicCollectionBJets "Constant = 0, Index = 1, Collection = 2, BJets = 3">
-
-<!ENTITY energyMode "Sum (Linear) = 0, Max (Linear) = 1, Sum (Logarithmic) = 2, Max (Logarithmic) = 3, Sum (Square Root) = 4, Max (Square Root) = 5">
-<!ENTITY symbol "Filled Square=0,Filled Circle=4,Horizontal Line=1,Vertical Line=2,Plus=3">
-<!ENTITY pickingModes "Event Data=0, Detectors=1">
-<!ENTITY frameCol "0,8:14">
-<!ENTITY detectCol "0:8,14">
-<!ENTITY dataCol "0,8,14:28">
-<!ENTITY histoCol "0,8,14:28">
-<!ENTITY real "<,>">
-<!ENTITY eta "η">
-<!ENTITY rho "ρ">
-<!ENTITY phi "Φ">
-<!ENTITY delta "Δ">
-<!ENTITY lambda "λ">
-<!ENTITY sigma "σ">
-<!ENTITY prime "'">
-<!ENTITY ne "!=">
-<!ENTITY le "<=">
-<!ENTITY ge ">=">
-<!ENTITY int "=,≠,<,≤,>,≥">
-<!ENTITY intEqual "=">
-<!ENTITY modesFZ "Standard = 0, RPC Middle 1 = 1, RPC Middle 2 = 2, RPC Outer = 3, MDT Inner and Extension = 4, MDT Middle = 5, MDT Outer = 6">
-<!ENTITY modesYX "Standard = 0, TGC Inner 1 = 1,TGC Middle 1 = 2, TGC Middle 2 = 3, TGC Middle 3 = 4, MDT/CSC Inner 1 = 5, MDT Extension = 6, MDT Middle = 7, MDT Outer = 8, FCAL EM= 9, FCAL HAD 1= 10, FCAL HAD 2= 11, LAr Ecap Presamp= 12, LAr Ecap 1= 13, LAr Ecap 2= 14, LAr Ecap 3= 15, HEC 1= 16, HEC 2= 17, HEC 3= 18, HEC 4= 19, LAr Ecap Summed=20, HEC Summed=21, MBTS=22">
-
-<!-- Entities for including blocks of common data -->
-<!ENTITY CommonInteractions SYSTEM "common-interactions.xml">
-<!ENTITY CommonParameters SYSTEM "common-parameters.xml">
diff --git a/graphics/AtlantisJava/configuration/epusti.csv b/graphics/AtlantisJava/configuration/epusti.csv
deleted file mode 100644
index 0c0b9051835..00000000000
--- a/graphics/AtlantisJava/configuration/epusti.csv
+++ /dev/null
@@ -1,5 +0,0 @@
-# Event Properties User Selected Trigger Items
-
-# example: "L1_EM7, L2_e10, EF_e10, L2_g10, EF_g10, L1_J70, EF_tau100"
-
-""
\ No newline at end of file
diff --git a/graphics/AtlantisJava/configuration/pdg.xml b/graphics/AtlantisJava/configuration/pdg.xml
deleted file mode 100755
index 20f87414de8..00000000000
--- a/graphics/AtlantisJava/configuration/pdg.xml
+++ /dev/null
@@ -1,109 +0,0 @@
-<?xml version="1.0"?>
-
-<!DOCTYPE PDG [
-
- <!ELEMENT PDG (Particle*)>
-
- <!ELEMENT Particle EMPTY>
-
- <!ATTLIST Particle
- charge (-1 | 0 | 1 | 10) #REQUIRED
- type CDATA #REQUIRED
- code CDATA #REQUIRED
- name CDATA #REQUIRED
- >
-
- <!--
- charge = 10 : unknown particle or bug
- -->
-
- <!ENTITY eta "η">
- <!ENTITY rho "ρ">
- <!ENTITY phi "Φ">
- <!ENTITY delta "Δ">
- <!ENTITY pi "π">
- <!ENTITY sigma "Σ">
- <!ENTITY tau "τ">
- <!ENTITY xi "Ξ">
- <!ENTITY omega "Ω">
- <!ENTITY mu "μ">
- <!ENTITY gamma "γ">
- <!ENTITY nu "ν">
- <!ENTITY lambda "Λ">
- <!ENTITY psi "ψ">
- <!ENTITY upsilon "Υ">
-
-]>
-
-<PDG>
-
- <!--
- 'type' used for InDet selection cuts
- -->
-
- <Particle charge="10" type="0" code="1" name="unknown" />
- <Particle charge="10" type="0" code="0" name="Bug" />
-
- <Particle charge="1" type="1" code="211" name="π" />
- <Particle charge="1" type="1" code="2212" name="Proton" />
- <Particle charge="1" type="1" code="321" name="K" />
- <Particle charge="1" type="1" code="3222" name="σ" />
- <Particle charge="-1" type="1" code="3112" name="Anti-σ" />
- <Particle charge="1" type="1" code="411" name="D" />
- <Particle charge="1" type="1" code="431" name="Ds" />
- <Particle charge="-1" type="1" code="3312" name="ξ" />
- <Particle charge="-1" type="1" code="3334" name="ω" />
- <Particle charge="-1" type="2" code="15" name="τ" />
- <Particle charge="-1" type="3" code="11" name="e" />
- <Particle charge="-1" type="4" code="13" name="μ" />
- <Particle charge="0" type="5" code="111" name="π0" />
- <Particle charge="0" type="5" code="2112" name="Neutron" />
- <Particle charge="0" type="5" code="130" name="K0_L" />
- <Particle charge="0" type="5" code="310" name="K0_S" />
- <Particle charge="0" type="5" code="3212" name="σ0" />
- <Particle charge="0" type="5" code="221" name="η" />
- <Particle charge="0" type="5" code="3122" name="λ" />
- <Particle charge="0" type="5" code="3322" name="ξ0" />
- <Particle charge="0" type="5" code="421" name="D0" />
- <Particle charge="0" type="6" code="22" name="γ" />
- <Particle charge="0" type="7" code="12" name="ν" />
- <Particle charge="0" type="7" code="14" name="ν" />
- <Particle charge="0" type="7" code="16" name="ν" />
- <Particle charge="0" type="7" code="1000022" name="neutralino" />
- <Particle charge="0" type="7" code="1000039" name="gravitino" />
- <Particle charge="0" type="8" code="1" name="u" />
- <Particle charge="0" type="8" code="2" name="d" />
- <Particle charge="0" type="8" code="3" name="s" />
- <Particle charge="0" type="8" code="4" name="c" />
- <Particle charge="0" type="8" code="5" name="b" />
- <Particle charge="0" type="8" code="6" name="t" />
- <Particle charge="-1" type="9" code="1000015" name="stau" />
- <Particle charge="-1" type="9" code="2000011" name="selectron" />
- <Particle charge="-1" type="9" code="2000013" name="smuon" />
- <Particle charge="1" type="10" code="24" name="W" />
- <Particle charge="-1" type="11" code="601" name="From Ntuple: d" />
- <Particle charge="1" type="11" code="602" name="From Ntuple: u" />
- <Particle charge="-1" type="11" code="603" name="From Ntuple: s" />
- <Particle charge="1" type="11" code="604" name="From Ntuple: c" />
- <Particle charge="-1" type="11" code="605" name="From Ntuple: b" />
- <Particle charge="1" type="11" code="606" name="From Ntuple: t" />
- <Particle charge="0" type="12" code="21" name="gluon" />
- <Particle charge="0" type="13" code="23" name="Z" />
-
- <!--
- fragmentation types
- -->
-
- <Particle charge="0" type="14" code="91" name="cluster fragmentation" />
- <Particle charge="0" type="14" code="92" name="string fragmentation" />
- <Particle charge="0" type="14" code="93" name="independent fragmentation" />
-
- <!--
- extra particles (Higgs (h0), J/psi, upsilon)
- -->
-
- <Particle charge="0" type="15" code="25" name="h0" />
- <Particle charge="0" type="15" code="443" name="J/ψ" />
- <Particle charge="0" type="15" code="553" name="υ" />
-
-</PDG>
diff --git a/graphics/AtlantisJava/configuration/rpsplt_fcal.csv b/graphics/AtlantisJava/configuration/rpsplt_fcal.csv
deleted file mode 100644
index f5c29d69492..00000000000
--- a/graphics/AtlantisJava/configuration/rpsplt_fcal.csv
+++ /dev/null
@@ -1,498 +0,0 @@
-# Real Pulse Shape Plots Lookup Table values for FCAL calorimeter
-
-
-# FCAL, lookup table layer 0, amplitude values
-FCAL_LAYER0_AMPLITUDE
- "0.0f, 0.0f, 0.0f, 0.0f, 0.0f,
- 0.0f, 0.0f, 0.0f, 0.0f, 0.0f,
- 0.0f, 0.0f, 0.00145f, -0.0002f, -0.00052f,
- -9e-05f, 0.00017f, 0.00022f, 3e-05f, -0.00031f,
- -0.00061f, -0.00046f, -0.00033f, 0.00012f, -0.00013f,
- -0.00025f, -0.0005f, -0.00038f, -0.00035f, -0.0002f,
- -0.00042f, -0.00031f, -0.00022f, 0.0001f, -0.00017f,
- -0.00033f, 0.00028f, 0.00017f, 2e-05f, 9e-05f,
- -0.00018f, -0.00023f, 6e-05f, -3e-05f, -0.00037f,
- -0.00029f, -0.00021f, -0.00042f, -0.00047f, -0.00032f,
- -0.00041f, -0.0002f, 0.0001f, 0.00032f, 0.0006f,
- 0.00147f, 0.00234f, 0.00409f, 0.00701f, 0.01124f,
- 0.01704f, 0.02441f, 0.0349f, 0.04655f, 0.06027f,
- 0.07674f, 0.09489f, 0.11624f, 0.13948f, 0.16603f,
- 0.19516f, 0.22665f, 0.25946f, 0.29534f, 0.3334f,
- 0.37421f, 0.41508f, 0.45488f, 0.49473f, 0.53529f,
- 0.5759f, 0.61356f, 0.65022f, 0.68584f, 0.72121f,
- 0.75454f, 0.78585f, 0.81642f, 0.84443f, 0.8694f,
- 0.89244f, 0.9134f, 0.93157f, 0.94811f, 0.96263f,
- 0.9756f, 0.98573f, 0.99294f, 0.99721f, 0.99958f,
- 0.99937f, 0.99596f, 0.99067f, 0.98339f, 0.97312f,
- 0.96037f, 0.94624f, 0.93069f, 0.9126f, 0.89226f,
- 0.87097f, 0.84789f, 0.82241f, 0.79715f, 0.7696f,
- 0.74111f, 0.713f, 0.68302f, 0.65322f, 0.62221f,
- 0.58901f, 0.55499f, 0.52119f, 0.48651f, 0.45161f,
- 0.41474f, 0.37863f, 0.34418f, 0.31038f, 0.2759f,
- 0.24106f, 0.20725f, 0.17425f, 0.14223f, 0.10914f,
- 0.07784f, 0.04664f, 0.01518f, -0.01539f, -0.04403f,
- -0.07252f, -0.1007f, -0.12714f, -0.15365f, -0.17955f,
- -0.20587f, -0.23009f, -0.25359f, -0.27704f, -0.29989f,
- -0.32317f, -0.34403f, -0.3634f, -0.3812f, -0.39806f,
- -0.41503f, -0.42994f, -0.4448f, -0.45808f, -0.46945f,
- -0.47926f, -0.48934f, -0.50054f, -0.51152f, -0.52073f,
- -0.52908f, -0.53691f, -0.5431f, -0.55034f, -0.55776f,
- -0.56445f, -0.56952f, -0.57341f, -0.57756f, -0.58138f,
- -0.58532f, -0.58718f, -0.58934f, -0.5898f, -0.59049f,
- -0.59047f, -0.5886f, -0.58601f, -0.58368f, -0.58009f,
- -0.57595f, -0.56963f, -0.55958f, -0.54925f, -0.5387f,
- -0.52797f, -0.5171f, -0.50614f, -0.49513f, -0.4841f,
- -0.47308f, -0.46212f, -0.45122f, -0.44041f, -0.42973f,
- -0.41916f, -0.40875f, -0.39851f, -0.38846f, -0.37862f,
- -0.36901f, -0.35965f, -0.35054f, -0.34168f, -0.33306f,
- -0.32471f, -0.31661f, -0.30876f, -0.30117f, -0.29382f,
- -0.28672f, -0.27987f, -0.27327f, -0.2669f, -0.26077f,
- -0.25487f, -0.2492f, -0.24375f, -0.23855f, -0.23358f,
- -0.22884f, -0.22433f, -0.22007f, -0.21602f, -0.21221f,
- -0.20861f, -0.20521f, -0.20199f, -0.19895f, -0.19609f,
- -0.19337f, -0.19079f, -0.18833f, -0.186f, -0.18376f,
- -0.1816f, -0.17953f, -0.17753f, -0.17557f, -0.17367f,
- -0.1718f, -0.16996f, -0.16814f, -0.16634f, -0.16454f,
- -0.16276f, -0.16097f, -0.15917f, -0.15737f, -0.15555f,
- -0.15372f, -0.15186f, -0.14997f, -0.14801f, -0.14599f,
- -0.14389f, -0.1417f, -0.13943f, -0.13712f, -0.13482f,
- -0.13255f, -0.13036f, -0.12824f, -0.12623f, -0.12429f,
- -0.12243f, -0.12061f, -0.11882f, -0.11704f, -0.11527f,
- -0.11349f, -0.11167f, -0.10983f, -0.10794f, -0.10603f,
- -0.10406f, -0.10205f, -0.1f, -0.09791f, -0.09578f,
- -0.09361f, -0.09141f, -0.08918f, -0.08694f, -0.08466f,
- -0.08238f, -0.08009f, -0.0778f, -0.0755f, -0.07321f,
- -0.07093f, -0.06867f, -0.06642f, -0.06421f, -0.06202f,
- -0.05986f, -0.05774f, -0.05566f, -0.0536f, -0.05158f,
- -0.04959f, -0.04764f, -0.04572f, -0.04385f, -0.04203f,
- -0.04025f, -0.03853f, -0.03687f, -0.03526f, -0.0337f,
- -0.03218f, -0.03072f, -0.0293f, -0.02794f, -0.02663f,
- -0.02536f, -0.02413f, -0.02294f, -0.02181f, -0.0207f,
- -0.01964f, -0.01861f, -0.01761f, -0.01665f, -0.01573f,
- -0.01484f, -0.01399f, -0.01319f, -0.01242f, -0.01168f,
- -0.011f, -0.01034f, -0.00973f, -0.00914f, -0.00861f,
- -0.00808f, -0.00761f, -0.00716f, -0.00673f, -0.00632f,
- -0.00595f, -0.00559f, -0.00526f, -0.00494f, -0.00464f,
- -0.00436f, -0.00409f, -0.00383f, -0.00359f, -0.00335f,
- -0.00312f, -0.00291f, -0.00271f, -0.00252f, -0.00234f,
- -0.00219f, -0.00204f, -0.0019f, -0.00174f, -0.00158f,
- -0.00139f, -0.00118f, -0.00094f, -0.00068f, -0.00042f,
- -0.00016f, 8e-05f, 0.00032f, 0.00052f, 0.0007f,
- 0.00088f, 0.00102f, 0.00114f, 0.0013f, 0.0014f,
- 0.00148f, 0.00159f, 0.00171f, 0.0018f, 0.00191f,
- 0.00197f, 0.00207f, 0.00218f, 0.00232f, 0.00243f,
- 0.00254f, 0.00267f, 0.0028f, 0.00292f, 0.00305f,
- 0.00318f, 0.00331f, 0.00347f, 0.00363f, 0.00376f,
- 0.00388f, 0.00405f, 0.00421f, 0.00433f, 0.00446f,
- 0.00458f, 0.00473f, 0.00488f, 0.00497f, 0.00514f,
- 0.00522f, 0.00538f, 0.00553f, 0.00563f, 0.00573f,
- 0.00588f, 0.00596f, 0.00608f, 0.0062f, 0.00629f,
- 0.00636f, 0.00646f, 0.00654f, 0.00663f, 0.00669f,
- 0.00674f, 0.00679f, 0.00688f, 0.00688f, 0.00696f,
- 0.00702f, 0.00704f, 0.00711f, 0.00712f, 0.0072f,
- 0.0072f, 0.00727f, 0.00729f, 0.00729f, 0.00737f,
- 0.00737f, 0.00737f, 0.00737f, 0.00746f, 0.00746f,
- 0.00746f, 0.00746f, 0.00746f, 0.00746f, 0.00746f,
- 0.00746f, 0.00746f, 0.00737f, 0.00737f, 0.00737f,
- 0.00737f, 0.00737f, 0.00737f, 0.00729f, 0.00729f,
- 0.00729f, 0.00729f, 0.00729f, 0.0072f, 0.0072f,
- 0.00717f, 0.00712f, 0.00708f, 0.00704f, 0.00704f,
- 0.00696f, 0.00696f, 0.00696f, 0.00696f, 0.00696f,
- 0.00696f, 0.00696f, 0.00696f, 0.00696f, 0.00696f,
- 0.00688f, 0.00688f, 0.00688f, 0.00688f, 0.00688f,
- 0.00684f, 0.00679f, 0.00679f, 0.00679f, 0.00671f,
- 0.00671f, 0.00671f, 0.00671f, 0.00663f, 0.00663f,
- 0.00663f, 0.00663f, 0.00659f, 0.00655f, 0.00655f,
- 0.00655f, 0.00655f, 0.00655f, 0.00651f, 0.00646f,
- 0.00646f, 0.00646f, 0.00646f, 0.00646f, 0.00646f,
- 0.00646f, 0.00646f, 0.00639f, 0.00638f, 0.00638f,
- 0.00638f, 0.00638f, 0.00638f, 0.00638f, 0.00638f,
- 0.00638f, 0.00638f, 0.00638f, 0.00638f, 0.0063f,
- 0.00629f, 0.00629f, 0.00629f, 0.00629f, 0.00629f,
- 0.00629f, 0.00629f, 0.00629f, 0.00629f, 0.00622f,
- 0.00622f, 0.00622f, 0.00622f, 0.00622f, 0.00622f,
- 0.00622f, 0.00622f, 0.00612f, 0.00612f, 0.00612f,
- 0.00612f, 0.00612f, 0.00612f, 0.00612f, 0.00612f,
- 0.00606f, 0.00605f, 0.00605f, 0.00605f, 0.00605f,
- 0.00605f, 0.00605f, 0.00601f, 0.00596f, 0.00596f,
- 0.00596f, 0.00596f, 0.00596f, 0.00596f, 0.00596f,
- 0.00588f, 0.00588f, 0.00588f, 0.00588f, 0.00588f,
- 0.00588f, 0.00585f, 0.00579f, 0.00579f, 0.00579f,
- 0.00579f, 0.00579f, 0.00572f, 0.00572f, 0.00572f,
- 0.00572f, 0.00572f, 0.00572f, 0.00572f, 0.00572f,
- 0.00572f, 0.00563f, 0.00563f, 0.00563f, 0.00563f,
- 0.00563f, 0.00563f, 0.00563f, 0.00563f, 0.00563f,
- 0.00563f, 0.00563f, 0.00563f, 0.00563f, 0.00563f"
-
-
-# FCAL lookup table layer 1, amplitude values
-FCAL_LAYER1_AMPLITUDE
- "0.0f, 0.0f, 0.0f, 0.0f, 0.0f,
- 0.0f, 0.0f, 0.0f, 0.0f, -0.00014f,
- -0.00015f, -0.00019f, -0.00024f, -2e-05f, 8e-05f,
- 0.00012f, -3e-05f, -0.00012f, -0.00011f, -0.0002f,
- -4e-05f, 7e-05f, 5e-05f, -1e-05f, -9e-05f,
- -3e-05f, -0.00012f, -3e-05f, -3e-05f, -1e-05f,
- -3e-05f, -1e-05f, -0.00011f, -0.00021f, -0.00017f,
- -0.00016f, -6e-05f, 1e-05f, 1e-05f, -3e-05f,
- -0.00018f, -0.0002f, -0.00018f, -8e-05f, -2e-05f,
- -5e-05f, 0.00011f, 4e-05f, 0.00032f, 0.00076f,
- 0.00136f, 0.00271f, 0.00417f, 0.00696f, 0.01099f,
- 0.01602f, 0.02229f, 0.02963f, 0.03936f, 0.05282f,
- 0.06928f, 0.08819f, 0.10857f, 0.12914f, 0.15221f,
- 0.17682f, 0.20343f, 0.23335f, 0.26583f, 0.29864f,
- 0.33272f, 0.36835f, 0.40457f, 0.44149f, 0.47595f,
- 0.51049f, 0.54648f, 0.5816f, 0.61676f, 0.65114f,
- 0.68367f, 0.7141f, 0.74147f, 0.76915f, 0.79855f,
- 0.82565f, 0.85105f, 0.87379f, 0.89366f, 0.9111f,
- 0.927f, 0.94162f, 0.95496f, 0.96664f, 0.97688f,
- 0.98534f, 0.99109f, 0.99601f, 0.99887f, 0.99964f,
- 0.99962f, 0.99681f, 0.99299f, 0.98726f, 0.98f,
- 0.97158f, 0.96249f, 0.95187f, 0.9393f, 0.92385f,
- 0.90628f, 0.88827f, 0.86996f, 0.85269f, 0.83453f,
- 0.81503f, 0.79519f, 0.77368f, 0.74984f, 0.72628f,
- 0.70228f, 0.67716f, 0.65181f, 0.62399f, 0.59774f,
- 0.57129f, 0.54263f, 0.51398f, 0.48417f, 0.45309f,
- 0.42268f, 0.39325f, 0.36432f, 0.33302f, 0.29777f,
- 0.26282f, 0.22816f, 0.19507f, 0.16394f, 0.13389f,
- 0.10437f, 0.07385f, 0.04319f, 0.01199f, -0.01883f,
- -0.04912f, -0.07801f, -0.10802f, -0.13734f, -0.16453f,
- -0.19169f, -0.2182f, -0.24487f, -0.27109f, -0.29671f,
- -0.32083f, -0.34391f, -0.36456f, -0.38568f, -0.40796f,
- -0.428f, -0.44835f, -0.46643f, -0.48286f, -0.49816f,
- -0.51161f, -0.5248f, -0.5374f, -0.54928f, -0.5608f,
- -0.57103f, -0.57868f, -0.58697f, -0.59288f, -0.59803f,
- -0.60282f, -0.60532f, -0.60756f, -0.60862f, -0.60882f,
- -0.60828f, -0.60572f, -0.60473f, -0.60353f, -0.60196f,
- -0.6001f, -0.59736f, -0.59308f, -0.58847f, -0.5836f,
- -0.57846f, -0.57308f, -0.56749f, -0.56171f, -0.55576f,
- -0.54966f, -0.54343f, -0.5371f, -0.53066f, -0.52415f,
- -0.51757f, -0.51094f, -0.50428f, -0.4976f, -0.4909f,
- -0.4842f, -0.47749f, -0.47078f, -0.4641f, -0.45745f,
- -0.45081f, -0.44422f, -0.43769f, -0.43118f, -0.42475f,
- -0.41838f, -0.41207f, -0.40583f, -0.39965f, -0.39355f,
- -0.38752f, -0.38156f, -0.37568f, -0.36988f, -0.36414f,
- -0.35848f, -0.35292f, -0.34744f, -0.34205f, -0.33676f,
- -0.33155f, -0.32642f, -0.32135f, -0.31634f, -0.31139f,
- -0.30648f, -0.30164f, -0.29688f, -0.29227f, -0.28779f,
- -0.28349f, -0.27937f, -0.27541f, -0.2716f, -0.26792f,
- -0.26432f, -0.26084f, -0.25743f, -0.25406f, -0.25074f,
- -0.24743f, -0.24413f, -0.24086f, -0.23757f, -0.23428f,
- -0.23096f, -0.22764f, -0.22429f, -0.22092f, -0.21754f,
- -0.21414f, -0.21072f, -0.20729f, -0.20385f, -0.20038f,
- -0.19692f, -0.19344f, -0.18993f, -0.18644f, -0.18293f,
- -0.17943f, -0.17592f, -0.17244f, -0.16898f, -0.16553f,
- -0.16211f, -0.1587f, -0.15533f, -0.15198f, -0.14866f,
- -0.14538f, -0.14213f, -0.13891f, -0.13573f, -0.13259f,
- -0.12948f, -0.12641f, -0.1234f, -0.12042f, -0.11747f,
- -0.11457f, -0.11173f, -0.10891f, -0.10617f, -0.10345f,
- -0.10079f, -0.09819f, -0.09562f, -0.09311f, -0.09065f,
- -0.08823f, -0.08586f, -0.08354f, -0.08125f, -0.07903f,
- -0.07685f, -0.07471f, -0.07262f, -0.07057f, -0.06857f,
- -0.06662f, -0.06471f, -0.06284f, -0.06102f, -0.05926f,
- -0.05751f, -0.05582f, -0.05416f, -0.05254f, -0.05096f,
- -0.04942f, -0.04792f, -0.04647f, -0.04507f, -0.04369f,
- -0.04235f, -0.04104f, -0.03974f, -0.03845f, -0.03717f,
- -0.03591f, -0.03467f, -0.03347f, -0.03231f, -0.03119f,
- -0.03012f, -0.0291f, -0.02812f, -0.02718f, -0.02629f,
- -0.02542f, -0.0246f, -0.02381f, -0.02304f, -0.0223f,
- -0.02157f, -0.02088f, -0.0202f, -0.01953f, -0.01888f,
- -0.01824f, -0.01761f, -0.017f, -0.0164f, -0.0158f,
- -0.01523f, -0.01466f, -0.0141f, -0.01355f, -0.01301f,
- -0.01247f, -0.01195f, -0.01141f, -0.0109f, -0.01039f,
- -0.00989f, -0.0094f, -0.0089f, -0.00842f, -0.00796f,
- -0.0075f, -0.00705f, -0.0066f, -0.00616f, -0.00575f,
- -0.00533f, -0.00493f, -0.00452f, -0.00413f, -0.00375f,
- -0.00338f, -0.003f, -0.00265f, -0.00228f, -0.00195f,
- -0.00162f, -0.00128f, -0.00096f, -0.00064f, -0.00035f,
- -5e-05f, 0.00023f, 0.0005f, 0.00079f, 0.00105f,
- 0.00131f, 0.00156f, 0.00181f, 0.00201f, 0.0023f,
- 0.0025f, 0.00267f, 0.00287f, 0.00315f, 0.00335f,
- 0.00346f, 0.00367f, 0.0039f, 0.0041f, 0.00421f,
- 0.00441f, 0.00458f, 0.00473f, 0.0049f, 0.00505f,
- 0.00516f, 0.00522f, 0.00537f, 0.00551f, 0.00552f,
- 0.00569f, 0.00579f, 0.0059f, 0.00601f, 0.00615f,
- 0.00628f, 0.00632f, 0.00648f, 0.00653f, 0.00664f,
- 0.00679f, 0.0068f, 0.00696f, 0.00696f, 0.007f,
- 0.00711f, 0.00711f, 0.00724f, 0.00728f, 0.00728f,
- 0.00728f, 0.00743f, 0.00743f, 0.00743f, 0.00743f,
- 0.00744f, 0.00759f, 0.00759f, 0.00759f, 0.00759f,
- 0.00759f, 0.00759f, 0.00774f, 0.00775f, 0.00775f,
- 0.00775f, 0.00775f, 0.00775f, 0.00775f, 0.00775f,
- 0.00789f, 0.00791f, 0.00791f, 0.00791f, 0.00791f,
- 0.00791f, 0.00791f, 0.00791f, 0.00791f, 0.00791f,
- 0.00791f, 0.00792f, 0.00807f, 0.00807f, 0.00807f,
- 0.00807f, 0.00807f, 0.00807f, 0.00807f, 0.00807f,
- 0.00807f, 0.00807f, 0.00807f, 0.00807f, 0.00807f,
- 0.00807f, 0.00807f, 0.00807f, 0.00807f, 0.00807f,
- 0.00807f, 0.00807f, 0.00807f, 0.00807f, 0.00807f,
- 0.00807f, 0.00807f, 0.00807f, 0.00807f, 0.00807f,
- 0.00807f, 0.00807f, 0.00807f, 0.00807f, 0.00807f,
- 0.00807f, 0.00807f, 0.00807f, 0.00807f, 0.00807f,
- 0.00807f, 0.00807f, 0.00807f, 0.00791f, 0.00791f,
- 0.00791f, 0.00791f, 0.00791f, 0.00791f, 0.00791f,
- 0.00791f, 0.00791f, 0.00791f, 0.00791f, 0.00791f,
- 0.00791f, 0.00791f, 0.00791f, 0.00791f, 0.00791f,
- 0.00791f, 0.00775f, 0.00775f, 0.00775f, 0.00775f,
- 0.00775f, 0.00775f, 0.00775f, 0.00775f, 0.00775f,
- 0.00775f, 0.00775f, 0.00775f, 0.00775f, 0.0076f,
- 0.00759f, 0.00759f, 0.00759f, 0.00759f, 0.00759f,
- 0.00759f, 0.00759f, 0.00759f, 0.00759f, 0.00759f,
- 0.00759f, 0.00753f, 0.00743f, 0.00743f, 0.00743f,
- 0.00743f, 0.00743f, 0.00743f, 0.00743f, 0.00743f,
- 0.00743f, 0.00743f, 0.00743f, 0.00743f, 0.00743f,
- 0.00728f, 0.00728f, 0.00728f, 0.00728f, 0.00728f,
- 0.00728f, 0.00728f, 0.00728f, 0.00728f, 0.00728f,
- 0.00728f, 0.00728f, 0.00728f, 0.00727f, 0.00711f,
- 0.00711f, 0.00711f, 0.00711f, 0.00711f, 0.00711f,
- 0.00711f, 0.00711f, 0.00711f, 0.00711f, 0.00711f,
- 0.00711f, 0.00711f, 0.00711f, 0.00711f, 0.00711f"
-
-
-# FCAL lookup table layer 2, amplitude values
-FCAL_LAYER2_AMPLITUDE
- "0.0f, 0.0f, 0.0f, 0.0f, 0.0f,
- 0.0f, 0.0f, 0.0f, 0.0f, 0.0f,
- 0.0f, -0.00128f, -0.00011f, 0.00018f, 2e-05f,
- 0.00012f, -6e-05f, -5e-05f, -4e-05f, -4e-05f,
- -6e-05f, -0.00031f, 3e-05f, -0.00022f, 7e-05f,
- -3e-05f, 2e-05f, 0.00011f, 9e-05f, -0.00025f,
- -5e-05f, -0.00026f, -3e-05f, -3e-05f, -5e-05f,
- -3e-05f, 8e-05f, 0.00016f, 0.00025f, 0.00015f,
- 0.00018f, 9e-05f, -0.00016f, -0.00017f, 0.00012f,
- 0.00031f, 0.00061f, 0.00137f, 0.00259f, 0.00487f,
- 0.00807f, 0.01106f, 0.01611f, 0.02298f, 0.03195f,
- 0.04154f, 0.05328f, 0.06624f, 0.08155f, 0.09926f,
- 0.11723f, 0.13765f, 0.16233f, 0.18937f, 0.21701f,
- 0.24599f, 0.27675f, 0.30806f, 0.34205f, 0.3763f,
- 0.40922f, 0.44335f, 0.47795f, 0.51151f, 0.54584f,
- 0.58035f, 0.61246f, 0.64345f, 0.67427f, 0.70516f,
- 0.73373f, 0.75953f, 0.78417f, 0.80817f, 0.83037f,
- 0.85125f, 0.87108f, 0.88998f, 0.9072f, 0.92291f,
- 0.93755f, 0.95053f, 0.96236f, 0.97239f, 0.9802f,
- 0.9869f, 0.99293f, 0.99661f, 0.99861f, 0.99968f,
- 0.99958f, 0.99822f, 0.99567f, 0.9913f, 0.98539f,
- 0.97946f, 0.97165f, 0.96321f, 0.95356f, 0.943f,
- 0.93288f, 0.92124f, 0.90748f, 0.8924f, 0.87741f,
- 0.86239f, 0.84699f, 0.83096f, 0.81354f, 0.79568f,
- 0.77812f, 0.75942f, 0.73898f, 0.71895f, 0.6979f,
- 0.67584f, 0.65541f, 0.63427f, 0.61183f, 0.58872f,
- 0.56582f, 0.54277f, 0.51966f, 0.49662f, 0.47374f,
- 0.45068f, 0.42633f, 0.40063f, 0.37501f, 0.35003f,
- 0.32551f, 0.30122f, 0.27643f, 0.2508f, 0.22669f,
- 0.2018f, 0.1756f, 0.15017f, 0.12637f, 0.102f,
- 0.07617f, 0.05128f, 0.02768f, 0.00478f, -0.01868f,
- -0.0427f, -0.06341f, -0.08504f, -0.10568f, -0.12438f,
- -0.14567f, -0.16618f, -0.18641f, -0.20502f, -0.22295f,
- -0.24012f, -0.2569f, -0.27256f, -0.28823f, -0.30194f,
- -0.31542f, -0.33028f, -0.34304f, -0.35301f, -0.36387f,
- -0.37478f, -0.38515f, -0.39437f, -0.4023f, -0.41029f,
- -0.41949f, -0.42512f, -0.43117f, -0.43628f, -0.44007f,
- -0.4454f, -0.45203f, -0.45813f, -0.46382f, -0.46907f,
- -0.4739f, -0.47832f, -0.48235f, -0.48597f, -0.4892f,
- -0.49207f, -0.49454f, -0.49666f, -0.49841f, -0.49984f,
- -0.50092f, -0.50166f, -0.50208f, -0.50221f, -0.50202f,
- -0.50155f, -0.50082f, -0.49982f, -0.49856f, -0.49706f,
- -0.49533f, -0.49338f, -0.49122f, -0.48885f, -0.48628f,
- -0.48354f, -0.48064f, -0.47755f, -0.47432f, -0.47094f,
- -0.46742f, -0.46379f, -0.46001f, -0.45611f, -0.45208f,
- -0.4479f, -0.44361f, -0.43919f, -0.43467f, -0.43006f,
- -0.42543f, -0.42077f, -0.41613f, -0.4115f, -0.4069f,
- -0.40233f, -0.39778f, -0.39325f, -0.38873f, -0.38422f,
- -0.37971f, -0.37519f, -0.37068f, -0.36616f, -0.36163f,
- -0.3571f, -0.35256f, -0.34802f, -0.34347f, -0.33892f,
- -0.33436f, -0.32982f, -0.32529f, -0.32077f, -0.31626f,
- -0.31179f, -0.30733f, -0.30289f, -0.2985f, -0.29413f,
- -0.2898f, -0.28552f, -0.28129f, -0.27709f, -0.27294f,
- -0.26885f, -0.26479f, -0.26078f, -0.25685f, -0.25293f,
- -0.24906f, -0.24524f, -0.24147f, -0.23772f, -0.23403f,
- -0.23038f, -0.22676f, -0.22318f, -0.21964f, -0.21614f,
- -0.21268f, -0.20925f, -0.20586f, -0.20249f, -0.19916f,
- -0.19588f, -0.19261f, -0.1894f, -0.18622f, -0.18305f,
- -0.17994f, -0.17686f, -0.1738f, -0.17078f, -0.16779f,
- -0.16484f, -0.1619f, -0.15902f, -0.15615f, -0.15333f,
- -0.15054f, -0.14777f, -0.14504f, -0.14234f, -0.13967f,
- -0.13704f, -0.13444f, -0.13187f, -0.12934f, -0.12684f,
- -0.12439f, -0.12197f, -0.11959f, -0.11724f, -0.11494f,
- -0.11265f, -0.1104f, -0.10815f, -0.10592f, -0.10371f,
- -0.10151f, -0.09934f, -0.0972f, -0.09509f, -0.09302f,
- -0.09099f, -0.08899f, -0.08705f, -0.08514f, -0.08327f,
- -0.08145f, -0.07966f, -0.0779f, -0.07617f, -0.07448f,
- -0.07282f, -0.07119f, -0.06958f, -0.06801f, -0.06646f,
- -0.06493f, -0.06344f, -0.06196f, -0.06051f, -0.05908f,
- -0.05768f, -0.05629f, -0.05495f, -0.0536f, -0.05229f,
- -0.051f, -0.04974f, -0.04849f, -0.04726f, -0.04607f,
- -0.0449f, -0.04375f, -0.04262f, -0.04151f, -0.04044f,
- -0.03937f, -0.03834f, -0.03732f, -0.03634f, -0.03536f,
- -0.0344f, -0.03347f, -0.03256f, -0.03166f, -0.03079f,
- -0.02993f, -0.02908f, -0.02826f, -0.02745f, -0.02666f,
- -0.02588f, -0.02512f, -0.02437f, -0.02364f, -0.02293f,
- -0.02223f, -0.02154f, -0.02087f, -0.02021f, -0.01957f,
- -0.01892f, -0.0183f, -0.01768f, -0.0171f, -0.01651f,
- -0.01594f, -0.01536f, -0.01482f, -0.01428f, -0.01375f,
- -0.01323f, -0.01271f, -0.01221f, -0.01171f, -0.01123f,
- -0.01076f, -0.01029f, -0.00984f, -0.0094f, -0.00898f,
- -0.00857f, -0.00817f, -0.00777f, -0.00739f, -0.007f,
- -0.00663f, -0.00624f, -0.00587f, -0.00551f, -0.00514f,
- -0.00479f, -0.00444f, -0.0041f, -0.00377f, -0.00344f,
- -0.00313f, -0.00282f, -0.00252f, -0.00223f, -0.00195f,
- -0.00168f, -0.0014f, -0.00114f, -0.00089f, -0.00063f,
- -0.00039f, -0.00015f, 9e-05f, 0.00031f, 0.00053f,
- 0.00076f, 0.00096f, 0.00117f, 0.00138f, 0.00158f,
- 0.00178f, 0.00194f, 0.00216f, 0.00234f, 0.00251f,
- 0.00269f, 0.0029f, 0.00298f, 0.00319f, 0.00338f,
- 0.00353f, 0.00368f, 0.00383f, 0.00398f, 0.00408f,
- 0.00427f, 0.00438f, 0.00447f, 0.00458f, 0.00472f,
- 0.00488f, 0.00501f, 0.00512f, 0.00517f, 0.00532f,
- 0.00546f, 0.00547f, 0.00561f, 0.00572f, 0.00576f,
- 0.0059f, 0.00594f, 0.00606f, 0.0062f, 0.0062f,
- 0.00635f, 0.00636f, 0.0065f, 0.0065f, 0.00664f,
- 0.00665f, 0.0068f, 0.0068f, 0.00684f, 0.00695f,
- 0.00695f, 0.0071f, 0.0071f, 0.00721f, 0.00725f,
- 0.00725f, 0.00739f, 0.0074f, 0.0074f, 0.00751f,
- 0.00755f, 0.00755f, 0.00759f, 0.00769f, 0.00769f,
- 0.00769f, 0.00769f, 0.00783f, 0.00783f, 0.00783f,
- 0.00783f, 0.00795f, 0.00799f, 0.00799f, 0.00799f,
- 0.00799f, 0.00812f, 0.00813f, 0.00813f, 0.00813f,
- 0.00813f, 0.00813f, 0.00828f, 0.00829f, 0.00829f,
- 0.00829f, 0.00829f, 0.00829f, 0.00829f, 0.00829f,
- 0.00843f, 0.00843f, 0.00843f, 0.00843f, 0.00843f,
- 0.00843f, 0.00843f, 0.00843f, 0.00843f, 0.00843f,
- 0.00843f, 0.00843f, 0.00843f, 0.00844f, 0.00858f,
- 0.00858f, 0.00858f, 0.00858f, 0.00858f, 0.00858f,
- 0.00858f, 0.00858f, 0.00858f, 0.00858f, 0.00858f,
- 0.00858f, 0.00858f, 0.00858f, 0.00858f, 0.00858f,
- 0.00858f, 0.00858f, 0.00858f, 0.00858f, 0.00858f,
- 0.00858f, 0.00858f, 0.00858f, 0.00858f, 0.00858f,
- 0.00858f, 0.00858f, 0.00858f, 0.00858f, 0.00858f,
- 0.00858f, 0.00858f, 0.00858f, 0.00858f, 0.00858f,
- 0.00858f, 0.00858f, 0.00854f, 0.00843f, 0.00843f,
- 0.00843f, 0.00843f, 0.00843f, 0.00843f, 0.00843f,
- 0.00843f, 0.00843f, 0.00843f, 0.00843f, 0.00843f,
- 0.00843f, 0.00843f, 0.00843f, 0.00843f, 0.00843f,
- 0.00843f, 0.00843f, 0.00843f, 0.00843f, 0.00843f"
-
-
-# FCAL lookup table time values
-FCAL_TIME
- "0.5f, 1.5f, 2.5f, 3.5f, 4.5f,
- 5.5f, 6.5f, 7.5f, 8.5f, 9.5f,
- 10.5f, 11.5f, 12.5f, 13.5f, 14.5f,
- 15.5f, 16.5f, 17.5f, 18.5f, 19.5f,
- 20.5f, 21.5f, 22.5f, 23.5f, 24.5f,
- 25.5f, 26.5f, 27.5f, 28.5f, 29.5f,
- 30.5f, 31.5f, 32.5f, 33.5f, 34.5f,
- 35.5f, 36.5f, 37.5f, 38.5f, 39.5f,
- 40.5f, 41.5f, 42.5f, 43.5f, 44.5f,
- 45.5f, 46.5f, 47.5f, 48.5f, 49.5f,
- 50.5f, 51.5f, 52.5f, 53.5f, 54.5f,
- 55.5f, 56.5f, 57.5f, 58.5f, 59.5f,
- 60.5f, 61.5f, 62.5f, 63.5f, 64.5f,
- 65.5f, 66.5f, 67.5f, 68.5f, 69.5f,
- 70.5f, 71.5f, 72.5f, 73.5f, 74.5f,
- 75.5f, 76.5f, 77.5f, 78.5f, 79.5f,
- 80.5f, 81.5f, 82.5f, 83.5f, 84.5f,
- 85.5f, 86.5f, 87.5f, 88.5f, 89.5f,
- 90.5f, 91.5f, 92.5f, 93.5f, 94.5f,
- 95.5f, 96.5f, 97.5f, 98.5f, 99.5f,
- 100.5f, 101.5f, 102.5f, 103.5f, 104.5f,
- 105.5f, 106.5f, 107.5f, 108.5f, 109.5f,
- 110.5f, 111.5f, 112.5f, 113.5f, 114.5f,
- 115.5f, 116.5f, 117.5f, 118.5f, 119.5f,
- 120.5f, 121.5f, 122.5f, 123.5f, 124.5f,
- 125.5f, 126.5f, 127.5f, 128.5f, 129.5f,
- 130.5f, 131.5f, 132.5f, 133.5f, 134.5f,
- 135.5f, 136.5f, 137.5f, 138.5f, 139.5f,
- 140.5f, 141.5f, 142.5f, 143.5f, 144.5f,
- 145.5f, 146.5f, 147.5f, 148.5f, 149.5f,
- 150.5f, 151.5f, 152.5f, 153.5f, 154.5f,
- 155.5f, 156.5f, 157.5f, 158.5f, 159.5f,
- 160.5f, 161.5f, 162.5f, 163.5f, 164.5f,
- 165.5f, 166.5f, 167.5f, 168.5f, 169.5f,
- 170.5f, 171.5f, 172.5f, 173.5f, 174.5f,
- 175.5f, 176.5f, 177.5f, 178.5f, 179.5f,
- 180.5f, 181.5f, 182.5f, 183.5f, 184.5f,
- 185.5f, 186.5f, 187.5f, 188.5f, 189.5f,
- 190.5f, 191.5f, 192.5f, 193.5f, 194.5f,
- 195.5f, 196.5f, 197.5f, 198.5f, 199.5f,
- 200.5f, 201.5f, 202.5f, 203.5f, 204.5f,
- 205.5f, 206.5f, 207.5f, 208.5f, 209.5f,
- 210.5f, 211.5f, 212.5f, 213.5f, 214.5f,
- 215.5f, 216.5f, 217.5f, 218.5f, 219.5f,
- 220.5f, 221.5f, 222.5f, 223.5f, 224.5f,
- 225.5f, 226.5f, 227.5f, 228.5f, 229.5f,
- 230.5f, 231.5f, 232.5f, 233.5f, 234.5f,
- 235.5f, 236.5f, 237.5f, 238.5f, 239.5f,
- 240.5f, 241.5f, 242.5f, 243.5f, 244.5f,
- 245.5f, 246.5f, 247.5f, 248.5f, 249.5f,
- 250.5f, 251.5f, 252.5f, 253.5f, 254.5f,
- 255.5f, 256.5f, 257.5f, 258.5f, 259.5f,
- 260.5f, 261.5f, 262.5f, 263.5f, 264.5f,
- 265.5f, 266.5f, 267.5f, 268.5f, 269.5f,
- 270.5f, 271.5f, 272.5f, 273.5f, 274.5f,
- 275.5f, 276.5f, 277.5f, 278.5f, 279.5f,
- 280.5f, 281.5f, 282.5f, 283.5f, 284.5f,
- 285.5f, 286.5f, 287.5f, 288.5f, 289.5f,
- 290.5f, 291.5f, 292.5f, 293.5f, 294.5f,
- 295.5f, 296.5f, 297.5f, 298.5f, 299.5f,
- 300.5f, 301.5f, 302.5f, 303.5f, 304.5f,
- 305.5f, 306.5f, 307.5f, 308.5f, 309.5f,
- 310.5f, 311.5f, 312.5f, 313.5f, 314.5f,
- 315.5f, 316.5f, 317.5f, 318.5f, 319.5f,
- 320.5f, 321.5f, 322.5f, 323.5f, 324.5f,
- 325.5f, 326.5f, 327.5f, 328.5f, 329.5f,
- 330.5f, 331.5f, 332.5f, 333.5f, 334.5f,
- 335.5f, 336.5f, 337.5f, 338.5f, 339.5f,
- 340.5f, 341.5f, 342.5f, 343.5f, 344.5f,
- 345.5f, 346.5f, 347.5f, 348.5f, 349.5f,
- 350.5f, 351.5f, 352.5f, 353.5f, 354.5f,
- 355.5f, 356.5f, 357.5f, 358.5f, 359.5f,
- 360.5f, 361.5f, 362.5f, 363.5f, 364.5f,
- 365.5f, 366.5f, 367.5f, 368.5f, 369.5f,
- 370.5f, 371.5f, 372.5f, 373.5f, 374.5f,
- 375.5f, 376.5f, 377.5f, 378.5f, 379.5f,
- 380.5f, 381.5f, 382.5f, 383.5f, 384.5f,
- 385.5f, 386.5f, 387.5f, 388.5f, 389.5f,
- 390.5f, 391.5f, 392.5f, 393.5f, 394.5f,
- 395.5f, 396.5f, 397.5f, 398.5f, 399.5f,
- 400.5f, 401.5f, 402.5f, 403.5f, 404.5f,
- 405.5f, 406.5f, 407.5f, 408.5f, 409.5f,
- 410.5f, 411.5f, 412.5f, 413.5f, 414.5f,
- 415.5f, 416.5f, 417.5f, 418.5f, 419.5f,
- 420.5f, 421.5f, 422.5f, 423.5f, 424.5f,
- 425.5f, 426.5f, 427.5f, 428.5f, 429.5f,
- 430.5f, 431.5f, 432.5f, 433.5f, 434.5f,
- 435.5f, 436.5f, 437.5f, 438.5f, 439.5f,
- 440.5f, 441.5f, 442.5f, 443.5f, 444.5f,
- 445.5f, 446.5f, 447.5f, 448.5f, 449.5f,
- 450.5f, 451.5f, 452.5f, 453.5f, 454.5f,
- 455.5f, 456.5f, 457.5f, 458.5f, 459.5f,
- 460.5f, 461.5f, 462.5f, 463.5f, 464.5f,
- 465.5f, 466.5f, 467.5f, 468.5f, 469.5f,
- 470.5f, 471.5f, 472.5f, 473.5f, 474.5f,
- 475.5f, 476.5f, 477.5f, 478.5f, 479.5f,
- 480.5f, 481.5f, 482.5f, 483.5f, 484.5f,
- 485.5f, 486.5f, 487.5f, 488.5f, 489.5f,
- 490.5f, 491.5f, 492.5f, 493.5f, 494.5f,
- 495.5f, 496.5f, 497.5f, 498.5f, 499.5f,
- 500.5f, 501.5f, 502.5f, 503.5f, 504.5f,
- 505.5f, 506.5f, 507.5f, 508.5f, 509.5f,
- 510.5f, 511.5f, 512.5f, 513.5f, 514.5f,
- 515.5f, 516.5f, 517.5f, 518.5f, 519.5f,
- 520.5f, 521.5f, 522.5f, 523.5f, 524.5f,
- 525.5f, 526.5f, 527.5f, 528.5f, 529.5f,
- 530.5f, 531.5f, 532.5f, 533.5f, 534.5f,
- 535.5f, 536.5f, 537.5f, 538.5f, 539.5f,
- 540.5f, 541.5f, 542.5f, 543.5f, 544.5f,
- 545.5f, 546.5f, 547.5f, 548.5f, 549.5f,
- 550.5f, 551.5f, 552.5f, 553.5f, 554.5f,
- 555.5f, 556.5f, 557.5f, 558.5f, 559.5f,
- 560.5f, 561.5f, 562.5f, 563.5f, 564.5f,
- 565.5f, 566.5f, 567.5f, 568.5f, 569.5f,
- 570.5f, 571.5f, 572.5f, 573.5f, 574.5f,
- 575.5f, 576.5f, 577.5f, 578.5f, 579.5f,
- 580.5f, 581.5f, 582.5f, 583.5f, 584.5f,
- 585.5f, 586.5f, 587.5f, 588.5f, 589.5f,
- 590.5f, 591.5f, 592.5f, 593.5f, 594.5f,
- 595.5f, 596.5f, 597.5f, 598.5f, 599.5f"
-
diff --git a/graphics/AtlantisJava/configuration/rpsplt_hec.csv b/graphics/AtlantisJava/configuration/rpsplt_hec.csv
deleted file mode 100644
index 0b1285de75e..00000000000
--- a/graphics/AtlantisJava/configuration/rpsplt_hec.csv
+++ /dev/null
@@ -1,329 +0,0 @@
-# Real Pulse Shape Plots Lookup Table values for HEC calorimeter
-
-
-# HEC lookup table, amplitude values
-HEC_AMPLITUDE
-"0f, 0f, 0f, 0f, 0f,
-0f, 0f, 0f, 0f, 0f,
-0f, 0f, 0f, 0f, 0f,
-0f, 0f, 0f, 0f, 0f,
-0f, 0f, 0f, 0f, 0f,
-0f, 0f, 0f, 0f, 0f,
-0f, 0f, 0f, 0f, 0f,
-0f, 0f, 0f, 0f, 0f,
-0f, 0f, 0f, 0f, 0f,
-0f, 0f, 0f, 0f, 0f,
-0f, 0.000101187f, 0.00664058f, 0.00527695f, 0.0002041f,
-0.000215028f, 0.000293915f, 0.000490323f, 0.000903528f, 0.00170435f,
-0.00314031f, 0.00552285f, 0.00920343f, 0.0145539f, 0.0219273f,
-0.0316359f, 0.043942f, 0.059033f, 0.0770143f, 0.0978915f,
-0.121549f, 0.147763f, 0.17623f, 0.206609f, 0.238601f,
-0.272f, 0.306696f, 0.342649f, 0.379813f, 0.418056f,
-0.457117f, 0.496607f, 0.536044f, 0.57493f, 0.612812f,
-0.649334f, 0.684243f, 0.717392f, 0.748708f, 0.778165f,
-0.805768f, 0.831539f, 0.85551f, 0.877704f, 0.898131f,
-0.916774f, 0.933594f, 0.948547f, 0.961595f, 0.972719f,
-0.98191f, 0.989184f, 0.994564f, 0.998103f, 0.99988f,
-1f, 0.998581f, 0.995722f, 0.991483f, 0.985877f,
-0.978879f, 0.970462f, 0.960624f, 0.949425f, 0.936981f,
-0.92346f, 0.909059f, 0.893975f, 0.878385f, 0.862425f,
-0.846174f, 0.829654f, 0.812831f, 0.795626f, 0.777953f,
-0.759737f, 0.740952f, 0.721636f, 0.701896f, 0.681887f,
-0.661787f, 0.64177f, 0.621975f, 0.602503f, 0.583422f,
-0.564766f, 0.54655f, 0.528765f, 0.511376f, 0.494318f,
-0.477505f, 0.460853f, 0.444298f, 0.427826f, 0.411478f,
-0.395336f, 0.379494f, 0.364017f, 0.348923f, 0.334176f,
-0.319715f, 0.305481f, 0.291443f, 0.277605f, 0.263994f,
-0.250654f, 0.237625f, 0.224942f, 0.21263f, 0.200696f,
-0.189132f, 0.177913f, 0.166995f, 0.156325f, 0.145848f,
-0.135522f, 0.125326f, 0.115279f, 0.105427f, 0.0958465f,
-0.0866154f, 0.0777954f, 0.0694189f, 0.0614767f, 0.0539207f,
-0.0466707f, 0.0396293f, 0.0327093f, 0.0258526f, 0.0190475f,
-0.0123301f, 0.00576636f, -0.000577978f, -0.00665906f, -0.0124708f,
--0.0180326f, -0.023372f, -0.0285029f, -0.0334147f, -0.0380814f,
--0.0424744f, -0.0465814f, -0.0504199f, -0.0540364f, -0.0574984f,
--0.060883f, -0.0642531f, -0.06764f, -0.0710355f, -0.0743926f,
--0.0776445f, -0.0807294f, -0.0836115f, -0.0862943f, -0.0888135f,
--0.091227f, -0.0935885f, -0.0959315f, -0.0982592f, -0.100547f,
--0.102752f, -0.104836f, -0.106781f, -0.108595f, -0.110316f,
--0.112001f, -0.113707f, -0.115471f, -0.117302f, -0.119178f,
--0.121058f, -0.122894f, -0.124646f, -0.126288f, -0.127819f,
--0.129262f, -0.130658f, -0.132056f, -0.133495f, -0.134988f,
--0.136514f, -0.138027f, -0.139477f, -0.140829f, -0.142082f,
--0.143263f, -0.144417f, -0.145579f, -0.146758f, -0.147944f,
--0.149106f, -0.150203f, -0.151199f, -0.152063f, -0.152785f,
--0.153383f, -0.153917f, -0.154483f, -0.155185f, -0.156098f,
--0.157233f, -0.158526f, -0.159851f, -0.161065f, -0.162059f,
--0.162781f, -0.163253f, -0.163543f, -0.163732f, -0.163889f,
--0.164059f, -0.164269f, -0.164541f, -0.1649f, -0.165369f,
--0.165963f, -0.166671f, -0.167457f, -0.168261f, -0.169021f,
--0.169687f, -0.170237f, -0.170686f, -0.171074f, -0.171449f,
--0.171844f, -0.172271f, -0.172716f, -0.173152f, -0.173545f,
--0.173864f, -0.174091f, -0.174214f, -0.174244f, -0.174208f,
--0.174145f, -0.174091f, -0.174075f, -0.174109f, -0.174199f,
--0.174347f, -0.174556f, -0.174822f, -0.175124f, -0.175427f,
--0.175685f, -0.175868f, -0.175971f, -0.176023f, -0.17607f,
--0.17616f, -0.176313f, -0.176514f, -0.176721f, -0.176879f,
--0.176951f, -0.176934f, -0.176855f, -0.17676f, -0.176689f,
--0.176655f, -0.176648f, -0.176647f, -0.176639f, -0.176628f,
--0.176632f, -0.176673f, -0.176754f, -0.176855f, -0.176936f,
--0.176952f, -0.176875f, -0.176706f, -0.17647f, -0.176211f,
--0.175972f, -0.175794f, -0.175711f, -0.175755f, -0.175946f,
--0.176285f, -0.176742f, -0.177258f, -0.177757f, -0.17817f,
--0.17845f, -0.178579f, -0.178566f, -0.178437f, -0.178227f,
--0.177974f, -0.177712f, -0.177464f, -0.177238f, -0.177031f,
--0.176835f, -0.176652f, -0.176495f, -0.176386f, -0.176349f,
--0.176395f, -0.176518f, -0.176694f, -0.176894f, -0.177086f,
--0.177248f, -0.177368f, -0.177442f, -0.177475f, -0.177466f,
--0.177409f, -0.177287f, -0.177085f, -0.176805f, -0.176481f,
--0.176177f, -0.175968f, -0.175917f, -0.176041f, -0.176305f,
--0.176639f, -0.176956f, -0.177192f, -0.177313f, -0.177318f,
--0.17723f, -0.177084f, -0.176912f, -0.176746f, -0.176605f,
--0.176497f, -0.176412f, -0.176339f, -0.176273f, -0.176226f,
--0.176224f, -0.176294f, -0.176444f, -0.176653f, -0.176876f,
--0.177061f, -0.17717f, -0.177187f, -0.177116f, -0.176969f,
--0.17676f, -0.176495f, -0.176185f, -0.175846f, -0.175501f,
--0.175181f, -0.174914f, -0.174722f, -0.174603f, -0.174535f,
--0.174484f, -0.174419f, -0.174334f, -0.174257f, -0.174241f,
--0.174339f, -0.174568f, -0.174897f, -0.175247f, -0.175527f,
--0.175668f, -0.175649f, -0.175504f, -0.175302f, -0.175115f,
--0.17499f, -0.174941f, -0.174946f, -0.174966f, -0.174962f,
--0.174908f, -0.174796f, -0.174638f, -0.174464f, -0.174308f,
--0.174196f, -0.174135f, -0.174112f, -0.174105f, -0.174099f,
--0.1741f, -0.174129f, -0.174211f, -0.174347f, -0.174508f,
--0.174639f, -0.174693f, -0.174653f, -0.174547f, -0.17444f,
--0.174397f, -0.17446f, -0.174621f, -0.174834f, -0.175026f,
--0.175129f, -0.175111f, -0.174973f, -0.174755f, -0.174506f,
--0.174263f, -0.174042f, -0.173832f, -0.173617f, -0.173383f,
--0.173135f, -0.172888f, -0.172667f, -0.172506f, -0.172432f,
--0.172467f, -0.172611f, -0.172834f, -0.173088f, -0.173314f,
--0.173464f, -0.173523f, -0.173511f, -0.173469f, -0.17344f,
--0.173454f, -0.173512f, -0.173588f, -0.173645f, -0.173641f,
--0.173557f, -0.173396f, -0.173188f, -0.172974f, -0.172789f,
--0.172649f, -0.172556f, -0.172492f, -0.17244f, -0.172391f,
--0.172346f, -0.17231f, -0.172284f, -0.172267f, -0.172255f,
--0.172249f, -0.172253f, -0.172273f, -0.17231f, -0.172352f,
--0.172388f, -0.172401f, -0.172379f, -0.172311f, -0.172176f,
--0.171942f, -0.171573f, -0.17104f, -0.17034f, -0.169499f,
--0.168562f, -0.16757f, -0.166543f, -0.165477f, -0.164352f,
--0.163143f, -0.161835f, -0.160427f, -0.158922f, -0.157329f,
--0.155643f, -0.153858f, -0.15196f, -0.149937f, -0.147782f,
--0.145494f, -0.143082f, -0.14057f, -0.137992f, -0.135393f,
--0.132824f, -0.130331f, -0.127944f, -0.12568f, -0.123532f,
--0.121472f, -0.119454f, -0.117412f, -0.115278f, -0.112998f,
--0.110548f, -0.107945f, -0.105239f, -0.102501f, -0.0997942f,
--0.0971684f, -0.0946474f, -0.0922345f, -0.0899178f, -0.087684f,
--0.0855244f, -0.0834364f, -0.0814211f, -0.0794707f, -0.0775634f,
--0.0756617f, -0.0737202f, -0.0717019f, -0.0695945f, -0.0674152f,
--0.0652053f, -0.0630127f, -0.0608754f, -0.0588116f, -0.056822f,
--0.0549011f, -0.0530426f, -0.0512422f, -0.049497f, -0.0478024f,
--0.0461557f, -0.0445622f, -0.0430403f, -0.0416186f, -0.0403259f,
--0.0391799f, -0.0381777f, -0.0372926f, -0.0364776f, -0.0356725f,
--0.0348179f, -0.0338654f, -0.0327897f, -0.0315966f, -0.0303215f,
--0.0290217f, -0.0277614f, -0.0265938f, -0.0255459f, -0.0246139f,
--0.0237676f, -0.0229666f, -0.0221815f, -0.0214062f, -0.0206548f,
--0.0199489f, -0.0192999f, -0.0186995f, -0.0181225f, -0.0175376f,
--0.0169217f, -0.0162671f, -0.015582f, -0.0148865f, -0.0142068f,
--0.013571f, -0.0130013f, -0.0125088f, -0.0120878f, -0.0117106f,
--0.0113307f, -0.010896f, -0.0103706f, -0.00975524f, -0.00909709f,
--0.00847957f, -0.00799095f, -0.00768947f, -0.00757594f, -0.00759465f,
--0.007658f, -0.00768306f, -0.00761927f, -0.00745677f, -0.00721301f,
--0.0069087f, -0.00655204f, -0.00613803f, -0.00565728f, -0.0051098f,
--0.00451485f, -0.00390879f, -0.00333665f, -0.00284016f, -0.00244591f,
--0.00216087f, -0.00197292f, -0.00185468f, -0.00177376f, -0.0017025f,
--0.00162463f, -0.00153632f, -0.00144381f, -0.00135502f, -0.00127151f,
--0.00118363f, -0.00107486f, -0.000933489f, -0.000765153f, -0.000595878f,
--0.000462136f, -0.000391149f, -0.000381636f, -0.00039948f, -0.000392457f,
--0.00031506f, -0.000148614f, 9.0048e-05f, 0.00035786f, 0.000604245f,
-0.000786303f, 0.000878787f, 0.000875978f, 0.000791694f, 0.000657695f,
-0.00051893f, 0.000425818f, 0.000426074f, 0.000551054f, 0.000806885f,
-0.00117476f, 0.00161695f, 0.00208652f, 0.00253376f, 0.00290882f,
-0.00316028f, 0.00323814f, 0.00310475f, 0.00275044f, 0.00220837f,
-0.00155712f, 0.000907431f, 0.000374364f, 4.94567e-05f, -2.10426e-05f,
-0.000152468f, 0.000507839f, 0.000947469f, 0.00136192f, 0.00165448f,
-0.00176273f, 0.00167267f, 0.00141913f, 0.00107273f, 0.000722145f,
-0.000454802f, 0.000340469f, 0.000418315f, 0.000688105f, 0.00110894f,
-0.00160413f, 0.00207832f, 0.00244585f, 0.00265788f, 0.0027142f,
-0.00265461f, 0.00253537f, 0.00240031f, 0.00226566f, 0.00212575f,
-0.00197065f, 0.00180602f, 0.00166146f, 0.00158237f, 0.00160939f,
-0.00175419f, 0.00198981f, 0.00225835f, 0.00249251f, 0.00264239f,
-0.00268974f, 0.00264634f, 0.00253697f, 0.00238428f, 0.00220657f,
-0.00202457f, 0.00187327f, 0.00179975f, 0.00184459f, 0.00201759f,
-0.00228424f, 0.00257413f, 0.00280859f, 0.00293672f, 0.00295574f,
-0.00290479f, 0.0028433f, 0.00282479f, 0.00288132f, 0.00302619f,
-0.00326351f, 0.00359044f, 0.00398678f, 0.00440043f, 0.00474437f,
-0.00491837f, 0.00484987f, 0.00453341f, 0.00404398f, 0.00351183f,
-0.00306889f, 0.00279655f, 0.00270115f, 0.0027279f, 0.00280162f,
-0.00286887f, 0.00291904f, 0.00297615f, 0.00307301f, 0.00322684f,
-0.00343021f, 0.00365863f, 0.003885f, 0.00409031f, 0.00426691f,
-0.00441451f, 0f, 0f, 0f, 0f,
-0f, 0f, 0f, 0f, 0f,
-0f, 0f, 0f, 0f, 0f,
-0f, 0f, 0f, 0f, 0f,
-0f, 0f, 0f, 0f, 0f,
-0f, 0f, 0f, 0f, 0f,
-0f, 0f, 0f, 0f, 0f"
-
-
-# HEC lookup table, time values
-HEC_TIME
-"0f, 1.03959f, 2.07917f, 3.11876f, 4.15835f,
-5.19794f, 6.23752f, 7.27711f, 8.3167f, 9.35629f,
-10.3959f, 11.4355f, 12.475f, 13.5146f, 14.5542f,
-15.5938f, 16.6334f, 17.673f, 18.7126f, 19.7522f,
-20.7917f, 21.8313f, 22.8709f, 23.9105f, 24.9501f,
-25.9897f, 27.0293f, 28.0689f, 29.1084f, 30.148f,
-31.1876f, 32.2272f, 33.2668f, 34.3064f, 35.346f,
-36.3856f, 37.4251f, 38.4647f, 39.5043f, 40.5439f,
-41.5835f, 42.6231f, 43.6627f, 44.7023f, 45.7418f,
-46.7814f, 47.821f, 48.8606f, 49.9002f, 50.9398f,
-51.9794f, 53.019f, 54.0585f, 55.0981f, 56.1377f,
-57.1773f, 58.2169f, 59.2565f, 60.2961f, 61.3357f,
-62.3752f, 63.4148f, 64.4544f, 65.494f, 66.5336f,
-67.5732f, 68.6128f, 69.6524f, 70.6919f, 71.7315f,
-72.7711f, 73.8107f, 74.8503f, 75.8899f, 76.9295f,
-77.9691f, 79.0086f, 80.0482f, 81.0878f, 82.1274f,
-83.167f, 84.2066f, 85.2462f, 86.2858f, 87.3253f,
-88.3649f, 89.4045f, 90.4441f, 91.4837f, 92.5233f,
-93.5629f, 94.6025f, 95.642f, 96.6816f, 97.7212f,
-98.7608f, 99.8004f, 100.84f, 101.88f, 102.919f,
-103.959f, 104.998f, 106.038f, 107.078f, 108.117f,
-109.157f, 110.196f, 111.236f, 112.275f, 113.315f,
-114.355f, 115.394f, 116.434f, 117.473f, 118.513f,
-119.553f, 120.592f, 121.632f, 122.671f, 123.711f,
-124.75f, 125.79f, 126.83f, 127.869f, 128.909f,
-129.948f, 130.988f, 132.028f, 133.067f, 134.107f,
-135.146f, 136.186f, 137.226f, 138.265f, 139.305f,
-140.344f, 141.384f, 142.423f, 143.463f, 144.503f,
-145.542f, 146.582f, 147.621f, 148.661f, 149.701f,
-150.74f, 151.78f, 152.819f, 153.859f, 154.899f,
-155.938f, 156.978f, 158.017f, 159.057f, 160.096f,
-161.136f, 162.176f, 163.215f, 164.255f, 165.294f,
-166.334f, 167.374f, 168.413f, 169.453f, 170.492f,
-171.532f, 172.572f, 173.611f, 174.651f, 175.69f,
-176.73f, 177.769f, 178.809f, 179.849f, 180.888f,
-181.928f, 182.967f, 184.007f, 185.047f, 186.086f,
-187.126f, 188.165f, 189.205f, 190.245f, 191.284f,
-192.324f, 193.363f, 194.403f, 195.442f, 196.482f,
-197.522f, 198.561f, 199.601f, 200.64f, 201.68f,
-202.72f, 203.759f, 204.799f, 205.838f, 206.878f,
-207.917f, 208.957f, 209.997f, 211.036f, 212.076f,
-213.115f, 214.155f, 215.195f, 216.234f, 217.274f,
-218.313f, 219.353f, 220.393f, 221.432f, 222.472f,
-223.511f, 224.551f, 225.59f, 226.63f, 227.67f,
-228.709f, 229.749f, 230.788f, 231.828f, 232.868f,
-233.907f, 234.947f, 235.986f, 237.026f, 238.066f,
-239.105f, 240.145f, 241.184f, 242.224f, 243.263f,
-244.303f, 245.343f, 246.382f, 247.422f, 248.461f,
-249.501f, 250.541f, 251.58f, 252.62f, 253.659f,
-254.699f, 255.739f, 256.778f, 257.818f, 258.857f,
-259.897f, 260.936f, 261.976f, 263.016f, 264.055f,
-265.095f, 266.134f, 267.174f, 268.214f, 269.253f,
-270.293f, 271.332f, 272.372f, 273.412f, 274.451f,
-275.491f, 276.53f, 277.57f, 278.609f, 279.649f,
-280.689f, 281.728f, 282.768f, 283.807f, 284.847f,
-285.887f, 286.926f, 287.966f, 289.005f, 290.045f,
-291.084f, 292.124f, 293.164f, 294.203f, 295.243f,
-296.282f, 297.322f, 298.362f, 299.401f, 300.441f,
-301.48f, 302.52f, 303.56f, 304.599f, 305.639f,
-306.678f, 307.718f, 308.757f, 309.797f, 310.837f,
-311.876f, 312.916f, 313.955f, 314.995f, 316.035f,
-317.074f, 318.114f, 319.153f, 320.193f, 321.233f,
-322.272f, 323.312f, 324.351f, 325.391f, 326.43f,
-327.47f, 328.51f, 329.549f, 330.589f, 331.628f,
-332.668f, 333.708f, 334.747f, 335.787f, 336.826f,
-337.866f, 338.906f, 339.945f, 340.985f, 342.024f,
-343.064f, 344.103f, 345.143f, 346.183f, 347.222f,
-348.262f, 349.301f, 350.341f, 351.381f, 352.42f,
-353.46f, 354.499f, 355.539f, 356.579f, 357.618f,
-358.658f, 359.697f, 360.737f, 361.776f, 362.816f,
-363.856f, 364.895f, 365.935f, 366.974f, 368.014f,
-369.054f, 370.093f, 371.133f, 372.172f, 373.212f,
-374.251f, 375.291f, 376.331f, 377.37f, 378.41f,
-379.449f, 380.489f, 381.529f, 382.568f, 383.608f,
-384.647f, 385.687f, 386.727f, 387.766f, 388.806f,
-389.845f, 390.885f, 391.924f, 392.964f, 394.004f,
-395.043f, 396.083f, 397.122f, 398.162f, 399.202f,
-400.241f, 401.281f, 402.32f, 403.36f, 404.4f,
-405.439f, 406.479f, 407.518f, 408.558f, 409.597f,
-410.637f, 411.677f, 412.716f, 413.756f, 414.795f,
-415.835f, 416.875f, 417.914f, 418.954f, 419.993f,
-421.033f, 422.073f, 423.112f, 424.152f, 425.191f,
-426.231f, 427.27f, 428.31f, 429.35f, 430.389f,
-431.429f, 432.468f, 433.508f, 434.548f, 435.587f,
-436.627f, 437.666f, 438.706f, 439.746f, 440.785f,
-441.825f, 442.864f, 443.904f, 444.943f, 445.983f,
-447.023f, 448.062f, 449.102f, 450.141f, 451.181f,
-452.221f, 453.26f, 454.3f, 455.339f, 456.379f,
-457.418f, 458.458f, 459.498f, 460.537f, 461.577f,
-462.616f, 463.656f, 464.696f, 465.735f, 466.775f,
-467.814f, 468.854f, 469.894f, 470.933f, 471.973f,
-473.012f, 474.052f, 475.091f, 476.131f, 477.171f,
-478.21f, 479.25f, 480.289f, 481.329f, 482.369f,
-483.408f, 484.448f, 485.487f, 486.527f, 487.567f,
-488.606f, 489.646f, 490.685f, 491.725f, 492.764f,
-493.804f, 494.844f, 495.883f, 496.923f, 497.962f,
-499.002f, 500.042f, 501.081f, 502.121f, 503.16f,
-504.2f, 505.24f, 506.279f, 507.319f, 508.358f,
-509.398f, 510.437f, 511.477f, 512.517f, 513.556f,
-514.596f, 515.635f, 516.675f, 517.715f, 518.754f,
-519.794f, 520.833f, 521.873f, 522.913f, 523.952f,
-524.992f, 526.031f, 527.071f, 528.11f, 529.15f,
-530.19f, 531.229f, 532.269f, 533.308f, 534.348f,
-535.388f, 536.427f, 537.467f, 538.506f, 539.546f,
-540.585f, 541.625f, 542.665f, 543.704f, 544.744f,
-545.783f, 546.823f, 547.863f, 548.902f, 549.942f,
-550.981f, 552.021f, 553.061f, 554.1f, 555.14f,
-556.179f, 557.219f, 558.258f, 559.298f, 560.338f,
-561.377f, 562.417f, 563.456f, 564.496f, 565.536f,
-566.575f, 567.615f, 568.654f, 569.694f, 570.734f,
-571.773f, 572.813f, 573.852f, 574.892f, 575.931f,
-576.971f, 578.011f, 579.05f, 580.09f, 581.129f,
-582.169f, 583.209f, 584.248f, 585.288f, 586.327f,
-587.367f, 588.407f, 589.446f, 590.486f, 591.525f,
-592.565f, 593.604f, 594.644f, 595.684f, 596.723f,
-597.763f, 598.802f, 599.842f, 600.882f, 601.921f,
-602.961f, 604f, 605.04f, 606.08f, 607.119f,
-608.159f, 609.198f, 610.238f, 611.277f, 612.317f,
-613.357f, 614.396f, 615.436f, 616.475f, 617.515f,
-618.555f, 619.594f, 620.634f, 621.673f, 622.713f,
-623.752f, 624.792f, 625.832f, 626.871f, 627.911f,
-628.95f, 629.99f, 631.03f, 632.069f, 633.109f,
-634.148f, 635.188f, 636.228f, 637.267f, 638.307f,
-639.346f, 640.386f, 641.425f, 642.465f, 643.505f,
-644.544f, 645.584f, 646.623f, 647.663f, 648.703f,
-649.742f, 650.782f, 651.821f, 652.861f, 653.901f,
-654.94f, 655.98f, 657.019f, 658.059f, 659.098f,
-660.138f, 661.178f, 662.217f, 663.257f, 664.296f,
-665.336f, 666.376f, 667.415f, 668.455f, 669.494f,
-670.534f, 671.574f, 672.613f, 673.653f, 674.692f,
-675.732f, 676.771f, 677.811f, 678.851f, 679.89f,
-680.93f, 681.969f, 683.009f, 684.049f, 685.088f,
-686.128f, 687.167f, 688.207f, 689.247f, 690.286f,
-691.326f, 692.365f, 693.405f, 694.444f, 695.484f,
-696.524f, 697.563f, 698.603f, 699.642f, 700.682f,
-701.722f, 702.761f, 703.801f, 704.84f, 705.88f,
-706.919f, 707.959f, 708.999f, 710.038f, 711.078f,
-712.117f, 713.157f, 714.197f, 715.236f, 716.276f,
-717.315f, 718.355f, 719.395f, 720.434f, 721.474f,
-722.513f, 723.553f, 724.592f, 725.632f, 726.672f,
-727.711f, 728.751f, 729.79f, 730.83f, 731.87f,
-732.909f, 733.949f, 734.988f, 736.028f, 737.068f,
-738.107f, 739.147f, 740.186f, 741.226f, 742.265f,
-743.305f, 744.345f, 745.384f, 746.424f, 747.463f,
-748.503f, 749.543f, 750.582f, 751.622f, 752.661f,
-753.701f, 754.741f, 755.78f, 756.82f, 757.859f,
-758.899f, 759.938f, 760.978f, 762.018f, 763.057f,
-764.097f, 765.136f, 766.176f, 767.216f, 768.255f,
-769.295f, 770.334f, 771.374f, 772.414f, 773.453f,
-774.493f, 775.532f, 776.572f, 777.611f, 778.651f,
-779.691f, 780.73f, 781.77f, 782.809f, 783.849f,
-784.889f, 785.928f, 786.968f, 788.007f, 789.047f,
-790.086f, 791.126f, 792.166f, 793.205f, 794.245f,
-795.284f, 796.324f, 797.364f, 798.403f, 799.443f,
-800.482f, 801.522f, 802.562f, 803.601f, 804.641f,
-805.68f, 806.72f, 807.759f, 808.799f, 809.839f,
-810.878f, 811.918f, 812.957f, 813.997f, 815.037f,
-816.076f, 817.116f, 818.155f, 819.195f, 820.235f,
-821.274f, 822.314f, 823.353f, 824.393f, 825.432f,
-826.472f, 827.512f, 828.551f, 829.591f, 830.63f"
diff --git a/graphics/AtlantisJava/configuration/rpsplt_tile.csv b/graphics/AtlantisJava/configuration/rpsplt_tile.csv
deleted file mode 100644
index 213666c43c9..00000000000
--- a/graphics/AtlantisJava/configuration/rpsplt_tile.csv
+++ /dev/null
@@ -1,169 +0,0 @@
-# Real Pulse Shape Plots Lookup Table values for TILE calorimeter
-
-# TILE, time values
-TILE_TIME
-"-75.5f, -75f, -74.5f, -74f, -73.5f,
--73f, -72.5f, -72f, -71.5f, -71f,
--70.5f, -70f, -69.5f, -69f, -68.5f,
--68f, -67.5f, -67f, -66.5f, -66f,
--65.5f, -65f, -64.5f, -64f, -63.5f,
--63f, -62.5f, -62f, -61.5f, -61f,
--60.5f, -60f, -59.5f, -59f, -58.5f,
--58f, -57.5f, -57f, -56.5f, -56f,
--55.5f, -55f, -54.5f, -54f, -53.5f,
--53f, -52.5f, -52f, -51.5f, -51f,
--50.5f, -50f, -49.5f, -49f, -48.5f,
--48f, -47.5f, -47f, -46.5f, -46f,
--45.5f, -45f, -44.5f, -44f, -43.5f,
--43f, -42.5f, -42f, -41.5f, -41f,
--40.5f, -40f, -39.5f, -39f, -38.5f,
--38f, -37.5f, -37f, -36.5f, -36f,
--35.5f, -35f, -34.5f, -34f, -33.5f,
--33f, -32.5f, -32f, -31.5f, -31f,
--30.5f, -30f, -29.5f, -29f, -28.5f,
--28f, -27.5f, -27f, -26.5f, -26f,
--25.5f, -25f, -24.5f, -24f, -23.5f,
--23f, -22.5f, -22f, -21.5f, -21f,
--20.5f, -20f, -19.5f, -19f, -18.5f,
--18f, -17.5f, -17f, -16.5f, -16f,
--15.5f, -15f, -14.5f, -14f, -13.5f,
--13f, -12.5f, -12f, -11.5f, -11f,
--10.5f, -10f, -9.5f, -9f, -8.5f,
--8f, -7.5f, -7f, -6.5f, -6f,
--5.5f, -5f, -4.5f, -4f, -3.5f,
--3f, -2.5f, -2f, -1.5f, -1f,
--0.5f, 0f, 0.5f, 1f, 1.5f,
-2f, 2.5f, 3f, 3.5f, 4f,
-4.5f, 5f, 5.5f, 6f, 6.5f,
-7f, 7.5f, 8f, 8.5f, 9f,
-9.5f, 10f, 10.5f, 11f, 11.5f,
-12f, 12.5f, 13f, 13.5f, 14f,
-14.5f, 15f, 15.5f, 16f, 16.5f,
-17f, 17.5f, 18f, 18.5f, 19f,
-19.5f, 20f, 20.5f, 21f, 21.5f,
-22f, 22.5f, 23f, 23.5f, 24f,
-24.5f, 25f, 25.5f, 26f, 26.5f,
-27f, 27.5f, 28f, 28.5f, 29f,
-29.5f, 30f, 30.5f, 31f, 31.5f,
-32f, 32.5f, 33f, 33.5f, 34f,
-34.5f, 35f, 35.5f, 36f, 36.5f,
-37f, 37.5f, 38f, 38.5f, 39f,
-39.5f, 40f, 40.5f, 41f, 41.5f,
-42f, 42.5f, 43f, 43.5f, 44f,
-44.5f, 45f, 45.5f, 46f, 46.5f,
-47f, 47.5f, 48f, 48.5f, 49f,
-49.5f, 50f, 50.5f, 51f, 51.5f,
-52f, 52.5f, 53f, 53.5f, 54f,
-54.5f, 55f, 55.5f, 56f, 56.5f,
-57f, 57.5f, 58f, 58.5f, 59f,
-59.5f, 60f, 60.5f, 61f, 61.5f,
-62f, 62.5f, 63f, 63.5f, 64f,
-64.5f, 65f, 65.5f, 66f, 66.5f,
-67f, 67.5f, 68f, 68.5f, 69f,
-69.5f, 70f, 70.5f, 71f, 71.5f,
-72f, 72.5f, 73f, 73.5f, 74f,
-74.5f, 75f, 75.5f, 76f, 76.5f,
-77f, 77.5f, 78f, 78.5f, 79f,
-79.5f, 80f, 80.5f, 81f, 81.5f,
-82f, 82.5f, 83f, 83.5f, 84f,
-84.5f, 85f, 85.5f, 86f, 86.5f,
-87f, 87.5f, 88f, 88.5f, 89f,
-89.5f, 90f, 90.5f, 91f, 91.5f,
-92f, 92.5f, 93f, 93.5f, 94f,
-94.5f, 95f, 95.5f, 96f, 96.5f,
-97f, 97.5f, 98f, 98.5f, 99f,
-99.5f, 100f, 100.5f, 101f, 101.5f,
-102f, 102.5f, 103f, 103.5f, 104f,
-104.5f, 105f, 105.5f, 106f, 106.5f,
-107f, 107.5f, 108f, 108.5f, 109f,
-109.5f, 110f, 110.5f, 111f, 111.5f,
-112f, 112.5f, 113f, 113.5f, 114f,
-114.5f, 115f, 115.5f, 116f, 116.5f,
-117f, 117.5f, 118f, 118.5f, 119f,
-119.5f, 120f, 120.5f, 121f, 121.5f,
-122f, 122.5f, 123f, 123.5f, 124f,
-124.5f"
-
-# TILE, amplitude values
-TILE_AMPLITUDE
-"0f, 2.304e-05f, 5.178e-05f, 8.592e-05f, 0.00012515f,
-0.00016918f, 0.0002177f, 0.00027043f, 0.00032705f, 0.00038728f,
-0.00045081f, 0.00051733f, 0.00058656f, 0.00065819f, 0.00073193f,
-0.00080746f, 0.0008845f, 0.00096275f, 0.0010419f, 0.00112166f,
-0.00120172f, 0.00128179f, 0.00136157f, 0.00144076f, 0.00151905f,
-0.00159642f, 0.0016754f, 0.00176001f, 0.00185428f, 0.00196225f,
-0.00208795f, 0.00223542f, 0.00240868f, 0.00261177f, 0.00284873f,
-0.00312358f, 0.00344037f, 0.00380312f, 0.00421586f, 0.00468264f,
-0.00520748f, 0.00579479f, 0.00645263f, 0.00719117f, 0.00802059f,
-0.00895106f, 0.00999278f, 0.0111559f, 0.0124507f, 0.0138872f,
-0.0154757f, 0.0172264f, 0.0191494f, 0.0212549f, 0.0235531f,
-0.0260541f, 0.0287667f, 0.0316991f, 0.0348593f, 0.0382556f,
-0.041896f, 0.0457887f, 0.0499419f, 0.0543637f, 0.0590621f,
-0.0640455f, 0.0693218f, 0.0748993f, 0.0807861f, 0.0869903f,
-0.09352f, 0.100383f, 0.107581f, 0.115115f, 0.122983f,
-0.131184f, 0.139719f, 0.148586f, 0.157786f, 0.167316f,
-0.177177f, 0.187369f, 0.19789f, 0.208739f, 0.219917f,
-0.231423f, 0.243248f, 0.255385f, 0.267822f, 0.28055f,
-0.29356f, 0.306842f, 0.320385f, 0.334181f, 0.348219f,
-0.362489f, 0.376982f, 0.391688f, 0.406597f, 0.421699f,
-0.436986f, 0.452445f, 0.46806f, 0.483808f, 0.499668f,
-0.515617f, 0.531635f, 0.547698f, 0.563786f, 0.579876f,
-0.595946f, 0.611975f, 0.62794f, 0.64382f, 0.659592f,
-0.675236f, 0.69073f, 0.706053f, 0.721186f, 0.736109f,
-0.7508f, 0.76524f, 0.779408f, 0.793285f, 0.806849f,
-0.82008f, 0.832959f, 0.845464f, 0.857576f, 0.869274f,
-0.880538f, 0.891349f, 0.901693f, 0.911564f, 0.920954f,
-0.929854f, 0.938257f, 0.946156f, 0.953541f, 0.960406f,
-0.966742f, 0.972542f, 0.977798f, 0.982501f, 0.986645f,
-0.990222f, 0.993234f, 0.995685f, 0.997581f, 0.998929f,
-0.999733f, 1f, 0.999735f, 0.998944f, 0.997632f,
-0.995806f, 0.99347f, 0.99063f, 0.987293f, 0.983464f,
-0.979148f, 0.974352f, 0.969089f, 0.963376f, 0.957231f,
-0.95067f, 0.943711f, 0.936371f, 0.928666f, 0.920615f,
-0.912235f, 0.903542f, 0.894553f, 0.885287f, 0.875759f,
-0.865988f, 0.855985f, 0.845763f, 0.835332f, 0.824704f,
-0.81389f, 0.8029f, 0.791746f, 0.780439f, 0.768991f,
-0.757412f, 0.745713f, 0.733906f, 0.722002f, 0.710012f,
-0.697947f, 0.685818f, 0.673635f, 0.66141f, 0.649153f,
-0.636873f, 0.624581f, 0.612288f, 0.600004f, 0.587739f,
-0.575503f, 0.563307f, 0.551161f, 0.539076f, 0.527062f,
-0.515129f, 0.503286f, 0.491542f, 0.479906f, 0.468386f,
-0.456991f, 0.445729f, 0.434609f, 0.42364f, 0.412831f,
-0.402189f, 0.391724f, 0.381444f, 0.371358f, 0.361474f,
-0.351802f, 0.342348f, 0.333115f, 0.3241f, 0.315301f,
-0.306715f, 0.298339f, 0.290172f, 0.282211f, 0.274453f,
-0.266897f, 0.259539f, 0.252377f, 0.245409f, 0.238632f,
-0.232044f, 0.225642f, 0.219421f, 0.213379f, 0.207511f,
-0.201813f, 0.196283f, 0.190915f, 0.185707f, 0.180655f,
-0.175755f, 0.171003f, 0.166395f, 0.161928f, 0.157598f,
-0.153402f, 0.149335f, 0.145394f, 0.141575f, 0.137874f,
-0.134288f, 0.130813f, 0.127445f, 0.12418f, 0.121015f,
-0.117947f, 0.11497f, 0.112082f, 0.109278f, 0.106556f,
-0.103911f, 0.10134f, 0.0988427f, 0.0964156f, 0.0940569f,
-0.0917646f, 0.0895367f, 0.0873709f, 0.0852652f, 0.0832176f,
-0.0812259f, 0.0792881f, 0.0774021f, 0.0755657f, 0.0737769f,
-0.0720337f, 0.0703338f, 0.0686753f, 0.0670561f, 0.065474f,
-0.0639269f, 0.0624129f, 0.0609298f, 0.0594755f, 0.0580479f,
-0.0566449f, 0.0552645f, 0.0539046f, 0.052563f, 0.0512377f,
-0.0499268f, 0.0486296f, 0.0473466f, 0.0460778f, 0.0448235f,
-0.0435841f, 0.0423598f, 0.0411508f, 0.0399573f, 0.0387798f,
-0.0376183f, 0.0364732f, 0.0353447f, 0.0342331f, 0.0331386f,
-0.0320615f, 0.0310021f, 0.0299605f, 0.0289372f, 0.0279322f,
-0.0269459f, 0.0259786f, 0.0250305f, 0.0241018f, 0.0231928f,
-0.0223038f, 0.021435f, 0.0205867f, 0.0197591f, 0.0189525f,
-0.0181671f, 0.017403f, 0.01666f, 0.0159379f, 0.0152367f,
-0.0145562f, 0.0138962f, 0.0132567f, 0.0126374f, 0.0120383f,
-0.0114592f, 0.0109f, 0.0103606f, 0.00984081f, 0.00934049f,
-0.00885952f, 0.00839776f, 0.00795509f, 0.00753137f, 0.00712647f,
-0.00674024f, 0.00637256f, 0.0060233f, 0.00569231f, 0.00537947f,
-0.00508463f, 0.00480767f, 0.00454845f, 0.00430684f, 0.0040827f,
-0.00387587f, 0.00368583f, 0.00351191f, 0.00335339f, 0.0032096f,
-0.00307982f, 0.00296336f, 0.00285953f, 0.00276764f, 0.00268698f,
-0.00261686f, 0.00255658f, 0.00250545f, 0.00246277f, 0.00242785f,
-0.00239998f, 0.00237849f, 0.00236265f, 0.00235179f, 0.00234521f,
-0.0023422f, 0.00234208f, 0.00234415f, 0.0023477f, 0.00235206f,
-0.00235651f, 0.00236036f, 0.00236293f, 0.0023635f, 0.00236139f,
-0.00235594f, 0.00234693f, 0.00233436f, 0.00231825f, 0.00229862f,
-0.00227549f, 0.00224886f, 0.00221876f, 0.0021852f, 0.00214819f,
-0.00210775f, 0.0020639f, 0.00201666f, 0.00196603f, 0.00191204f,
-0.0018547f"
diff --git a/graphics/AtlantisJava/events/event.dtd b/graphics/AtlantisJava/events/event.dtd
deleted file mode 100755
index e9937b30976..00000000000
--- a/graphics/AtlantisJava/events/event.dtd
+++ /dev/null
@@ -1,506 +0,0 @@
-<!-- -kine element is alias to barcode resp. to new-style truth association
- using barcodes + numBarcodes (1 hits - to more tracks) at hits
- (2006/08), kine should be removed completely on turn 2006/2007
--->
-
-<!ENTITY % string.Type "CDATA">
-
-<!ENTITY % eventAttributes
- "version %string.Type; #IMPLIED
- runNumber %string.Type; #IMPLIED
- eventNumber %string.Type; #IMPLIED
- dateTime %string.Type; #IMPLIED
- lumiBlock %string.Type; #IMPLIED
- eventProperties %string.Type; #IMPLIED">
-
-
-<!ELEMENT Event
- (BJet|CaloETMis|Cluster|CompositeParticle|CSC|CSCD|Electron|EmTauROI|
- ETMis|FCAL|HEC|IDScan|iPat|Jet|JetROI|LAr|LVL1JetElement|LVL1Result|
- LVL1TriggerTower|MBTS|MDT|MSeg|Muon|MuonETMis|MuonROI|ParticleJet|
- Photon|PixelRDO|RMTr|RPC|RTr|RVx|S3D|SCTRDO|Segment|SiHit|SMTr|STC|STr|
- TauJet|TGC|TILE|Track|TrigS3D|TriggerInfo|TRT|xKal)+>
-<!ATTLIST Event %eventAttributes;>
-
-<!ENTITY % attributes 'count CDATA "" storeGateKey CDATA ""'>
-
-<!ENTITY % type 'type (FLOAT|INT|STRING) #FIXED'>
-<!ENTITY % unit 'unit (NONE | CM | RAD | GEV)'>
-<!ENTITY % integer
- ' %type; "INT"
- multiple CDATA "1"
- %unit; "NONE" '>
-<!ENTITY % float
- ' %type; "FLOAT"
- multiple CDATA "1"
- %unit; "NONE" '>
-<!ENTITY % string
- ' %type; "STRING"
- multiple CDATA "1"
- %unit; "NONE" '>
-
-<!ELEMENT BJet (charge|clusterIndex|clusterKey|clusterLinkCount|energy|
- eta|label|lhSig|mass|phi|pt|secVtxCount|secVtxFitProb|secVtxMass|
- secVtxMult|secVtxRPhiDist|secVtxTagLh|secVtxTagLhErr|
- trackIndex|trackKey|trackLinkCount|weight)+>
-<!ATTLIST BJet %attributes;>
-
-<!ELEMENT CaloETMis (et|etx|ety)+>
-<!ATTLIST CaloETMis %attributes;>
-
-<!ELEMENT Cluster (cells|energy|emfrac|et|eta|id|numCells|phi)+>
-<!ATTLIST Cluster %attributes;>
-
-<!ELEMENT CompositeParticle (author|charge|dataType|daughterIndex|daughterKey|
- daughterPdgId|eta|label|pdgId|phi|pt|typeEV)+>
-<!ATTLIST CompositeParticle %attributes;>
-
-<!ELEMENT CSC (barcode|hitsFull|id|identifier|kine|length|numHits|sigma|
- x|y|z)+>
-<!ATTLIST CSC %attributes;>
-
-<!ELEMENT CSCD (barcode|charge|id|identifier|kine|length|x|y|z)+>
-<!ATTLIST CSCD %attributes;>
-
-<!ELEMENT Electron (author|clusterIndex|clusterKey|clusterLinkCount|dataType|
- emWeight|eOverp|et37|eta|etCone|etCone20|etHad1|f1|fracs1|
- hasTrack|hitsBLayer|hitsHighThresTRT|hitsPixel|hitsSCT|
- hitsTRT|isEM|isEMString|pdgId|phi|pionWeight|pt|trackIndex|trackKey|
- trackLinkCount)+>
-<!ATTLIST Electron %attributes;>
-
-<!ELEMENT EmTauROI (energy|energyEM|energyTAU|eta|phi|roiWord|thrPattern)+>
-<!ATTLIST EmTauROI %attributes;>
-
-<!ELEMENT ETMis (et|etx|ety)+>
-<!ATTLIST ETMis %attributes;>
-
-<!ELEMENT FCAL (adc2Mev|adcCounts|cluster|dx|dy|energy|id|layer|sub|
- x|y|channel|feedThrough|slot)+>
-<!ATTLIST FCAL %attributes;>
-
-<!ELEMENT HEC (adc2Mev|adcCounts|energy|eta|id|layer|phi|sub|
- cluster|channel|feedThrough|slot)+>
-<!ATTLIST HEC %attributes;>
-
-<!ELEMENT IDScan (barcode|chi2|cotTheta|covMatrix|d0|hits|id|numHits|
- phi0|pt|z0)+>
-<!ATTLIST IDScan %attributes;>
-
-<!ELEMENT InDetSegment (hits|numHits|phi|theta|x|y|z)+>
-<!ATTLIST InDetSegment %attributes;>
-
-<!ELEMENT iPat (barcode|chi2|cotTheta|covMatrix|d0|hits|
- id|kine|numHits|numPolyline|phi0|polylineX|polylineY|
- polylineZ|pt|z0)+>
-<!ATTLIST iPat %attributes;>
-
-<!-- cluster should be an array of calo Cluster IDs, but it's not provided in
- the event files nor any processing exists in the Jet handling code -->
-<!ELEMENT Jet (OutOfTimeEfrac|bTagName|bTagValue|cells|cluster|clusterIndex|clusterKey|clusterLinkCount|
- emfrac|et|eta|fcorCell|fcorDotx|fcorJet|fcorJetForCell|fracSamplingMax|hecf|
- isBad|isGood|isUgly|n90cells|n90const|nbadcells|id|jvf|numCells|phi|pt|
- quality|qualityLAr|qualityTile|sMax|tileGap3f|time|timeClusters|trackIndex|trackKey|
- trackLinkCount|mass|px|py|pz)+>
-<!ATTLIST Jet %attributes;>
-
-<!ELEMENT JetROI (energy|eta|phi)+>
-<!ATTLIST JetROI %attributes;>
-
-<!ELEMENT LAr (adc2Mev|adcCounts|BadCell|cellGain|cellPedestal|cellTime|cluster|
- energy|eta|id|layer|phi|sub|channel|feedThrough|slot)+>
-<!ATTLIST LAr %attributes;>
-
-<!ELEMENT LVL1JetElement (energy|eta|phi)+>
-<!ATTLIST LVL1JetElement %attributes;>
-
-<!ELEMENT LVL1Result (ctpItemList|ctpWord0|ctpWord1|ctpWord2|
- energyEtMiss|energyEx|energyEy|energySumEt|
- itemListEF|itemListL2|passedEF|passedL1|passedL2|
- passedTrigger|prescaleListEF|prescaleListL1|prescaleListL2)+>
-<!ATTLIST LVL1Result %attributes;>
-
-<!ELEMENT LVL1TriggerTower (emADC|emBCID|emEnergy|eta|hadADC|hadBCID|hadEnergy|
- isEMSaturated|isHadSaturated|numADC|phi|sumEnergy)+>
-<!ATTLIST LVL1TriggerTower %attributes;>
-
-<!ELEMENT MBTS (channel|energy|eta|label|module|phi|quality|sampling|time|type|
- adcCounts|cellPedestal|cellRawAmplitude|cellRawTime)+>
-<!ATTLIST MBTS %attributes;>
-
-<!ELEMENT MDT (barcode|driftR|id|identifier|kine|length|x|y|z)+>
-<!ATTLIST MDT %attributes;>
-
-<!ELEMENT MSeg (cotTheta|hits|numHits|phi0|x|y|z)+>
-<!ATTLIST MSeg %attributes;>
-
-<!ELEMENT Muon (author|chi2|dataType|eta|etConeIsol|pdgId|phi|pt|
- trackIndex|trackKey|trackLinkCount)+>
-<!ATTLIST Muon %attributes;>
-
-<!ELEMENT MuonETMis (et|etx|ety)+>
-<!ATTLIST MuonETMis %attributes;>
-
-<!ELEMENT MuonROI (energy|eta|phi|roiWord|thrName|thrNumber|thrValue)+>
-<!ATTLIST MuonROI %attributes;>
-
-<!ELEMENT MuonSegment (hits|numHits|phi|theta|x|y|z)+>
-<!ATTLIST MuonSegment %attributes;>
-
-<!ELEMENT ParticleJet (cells|cluster|et|eta|id|numCells|phi|pt)+>
-<!ATTLIST ParticleJet %attributes;>
-
-<!ELEMENT PixCluster (barcode|barcodes|eloss|etaModule|id|numBarcodes|
- phiModule|widthx|widthy|x0|y0|z0)+>
-<!ATTLIST PixCluster %attributes;>
-
-<!ELEMENT Photon (clusterIndex|clusterKey|clusterLinkCount|emWeight|et37|
- eta|etCone|etHad1|f1|fracs1|isEM|isEMString|phi|pionWeight|pt)+>
-<!ATTLIST Photon %attributes;>
-
-<!-- PixelRDO - object derived from S3D -->
-<!ELEMENT PixelRDO (etaModule|id|phiModule|x|y|z)+>
-<!ATTLIST PixelRDO %attributes;>
-
-<!ELEMENT RMTr (barcode|cotTheta|hits|hitsFull|id|kine|numHits|
- numPolyline|phi0|polylineX|polylineY|polylineZ|pt|
- x|y|z)+>
-<!ATTLIST RMTr %attributes;>
-
-<!ELEMENT RPC (barcode|id|identifier|kine|length|width|x|y|z)+>
-<!ATTLIST RPC %attributes;>
-
-<!ELEMENT RTr (barcode|chi2|cotTheta|covMatrix|d0|kine|phi0|pt|z0)+>
-<!ATTLIST RTr %attributes;>
-
-<!ELEMENT RVx (chi2|covMatrix|numTracks|vertexType|primVxCand|
- sgkey|tracks|x|y|z)+>
-<!ATTLIST RVx %attributes;>
-
-<!ELEMENT S3D (barcode|barcodes|clusters|etaModule|kine|numBarcodes|phi|
- phiModule|rho|x|y|z)+>
-<!ATTLIST S3D %attributes;>
-
-<!-- SCTRDO - object derived from STC (SiCluster) -->
-<!ELEMENT SCTRDO (BCIDError|etaModule|firstHitError|formatterError|id|
- lvl1Error|phiModule|preambleError|secondHitError|
- syncError|timeBin|x0|x1|y0|y1|z0|z1)+>
-<!ATTLIST SCTRDO %attributes;>
-
-<!ELEMENT Segment (hits|numHits|phi|theta|x|y|z)+>
-<!ATTLIST Segment %attributes;>
-
-<!ELEMENT SiHit (energyloss|trackid|x|y|z)+>
-<!ATTLIST SiHit %attributes;>
-
-<!ELEMENT SMTr (barcode|cotTheta|id|kine|phi0|pt|x|y|z)+>
-<!ATTLIST SMTr %attributes;>
-
-<!ELEMENT STC (barcode|barcodes|etaModule|id|kine|numBarcodes|
- phiModule|widthside|x0|x1|y0|y1|z0|z1)+>
-<!ATTLIST STC %attributes;>
-
-<!ELEMENT STr (barcode|code|eta|id|phi|phiEndVertex|phiVertex|pt|
- rhoEndVertex|rhoVertex|zVertex|zEndVertex)+>
-<!ATTLIST STr %attributes;>
-
-<!ELEMENT TauJet (author|charge|clusterIndex|clusterKey|clusterLinkCount|
- emRadius|eta|etEMCalib|etHadCalib|isolFrac|isTau|isTauString|
- logLhRatio|numTracks|phi|pt|stripWidth|trackIndex|
- trackKey|trackLinkCount)+>
-<!ATTLIST TauJet %attributes;>
-
-<!ELEMENT TGC (barcode|id|identifier|kine|length|lwidth|swidth|
- x|y|z)+>
-<!ATTLIST TGC %attributes;>
-
-<!ELEMENT TILE (adcCounts1|adcCounts2|BadCell|cluster|energy|eta|id|layer|phi|
- pmt1Chi2|pmt1Energy|pmt1Gain|pmt1Number|pmt1Pedestal|
- pmt1Time|pmt2Chi2|pmt2Energy|pmt2Gain|pmt2Number|
- pmt2Pedestal|pmt2Time|sub|pmt1ADCStatus|pmt2ADCStatus|
- pmt1RawTime|pmt2RawTime|pmt1RawAmplitude|pmt2RawAmplitude)+>
-<!ATTLIST TILE %attributes;>
-
-<!ELEMENT Track (author|barcode|chi2|cotTheta|covMatrix|d0|driftSign|hits|id|
- isOutlier|kine|numHits|numPolyline|numTsos|phi0|polylineX|
- polylineY|polylineZ|pt|tsosDetType|tsosPosR|tsosPullLoc1|
- tsosPullLoc2|tsosResLoc1|tsosResLoc2|trackAuthor|z0|numDoF|
- nBLayerHits|nPixHits|nSCTHits|nTRTHits)+>
-<!ATTLIST Track %attributes;>
-
-<!ELEMENT TrigS3D (barcodes|cluster|dphi|dr|dz|eta|id|layer|numBarcodes|phi|
- r|x|y|z)+>
-<!ATTLIST TrigS3D %attributes;>
-
-<!ELEMENT TriggerInfo (energyEtMiss|energyEx|energyEy|energySumEt|
- trigInfoEF|trigInfoExtL1ID|trigInfoL1|trigInfoL2|
- trigInfoLvl1Type|trigInfoStatus|trigInfoStreamTag)+>
-<!ATTLIST TriggerInfo %attributes;>
-
-<!ELEMENT TRT (barcode|barcodes|driftR|id|kine|numBarcodes|phi|rhoz|sub|
- threshold|noise|bitPattern|timeOverThreshold)+>
-<!ATTLIST TRT %attributes;>
-
-<!ELEMENT xKal (barcode|chi2|cotTheta|covMatrix|d0|hits|
- id|numHits|numPolyline|phi0|polylineX|polylineY|
- polylineZ|pt|z0)+>
-<!ATTLIST xKal %attributes;>
-
-<!ELEMENT OutOfTimeEfrac (#PCDATA)> <!ATTLIST OutOfTimeEfrac %float;>
-<!ELEMENT adc2Mev (#PCDATA)> <!ATTLIST adc2Mev %float;>
-<!ELEMENT adcCounts (#PCDATA)> <!ATTLIST adcCounts %integer;>
-<!ELEMENT adcCounts1 (#PCDATA)> <!ATTLIST adcCounts1 %integer;>
-<!ELEMENT adcCounts2 (#PCDATA)> <!ATTLIST adcCounts2 %integer;>
-<!ELEMENT author (#PCDATA)> <!ATTLIST author %string;>
-<!ELEMENT BadCell (#PCDATA)> <!ATTLIST BadCell %integer;>
-<!ELEMENT barcode (#PCDATA)> <!ATTLIST barcode %integer;>
-<!ELEMENT barcodes (#PCDATA)> <!ATTLIST barcodes %integer;>
-<!ELEMENT bitPattern (#PCDATA)> <!ATTLIST bitPattern %integer;>
-<!ELEMENT BCIDError (#PCDATA)> <!ATTLIST BCIDError %integer;>
-<!ELEMENT bTagName (#PCDATA)> <!ATTLIST bTagName %string;>
-<!ELEMENT bTagValue (#PCDATA)> <!ATTLIST bTagValue %float;>
-<!ELEMENT cellTime (#PCDATA)> <!ATTLIST cellTime %float;>
-<!ELEMENT cellGain (#PCDATA)> <!ATTLIST cellGain %integer;>
-<!ELEMENT cellPedestal (#PCDATA)> <!ATTLIST cellPedestal %float;>
-<!ELEMENT cells (#PCDATA)> <!ATTLIST cells %integer;>
-<!ELEMENT channel (#PCDATA)> <!ATTLIST channel %integer;>
-<!ELEMENT feedThrough (#PCDATA)> <!ATTLIST feedThrough %integer;>
-<!ELEMENT slot (#PCDATA)> <!ATTLIST slot %integer;>
-<!ELEMENT charge (#PCDATA)> <!ATTLIST charge %float;>
-<!ELEMENT chi2 (#PCDATA)> <!ATTLIST chi2 %float;>
-<!ELEMENT cluster (#PCDATA)> <!ATTLIST cluster %integer;>
-<!ELEMENT clusters (#PCDATA)> <!ATTLIST clusters %integer;>
-<!ELEMENT clusterIndex (#PCDATA)> <!ATTLIST clusterIndex %integer;>
-<!ELEMENT clusterKey (#PCDATA)> <!ATTLIST clusterKey %string;>
-<!ELEMENT clusterLinkCount (#PCDATA)> <!ATTLIST clusterKey %integer;>
-<!ELEMENT code (#PCDATA)> <!ATTLIST code %integer;>
-<!ELEMENT cotTheta (#PCDATA)> <!ATTLIST cotTheta %float;>
-<!ELEMENT covMatrix (#PCDATA)> <!ATTLIST covMatrix %float;>
-<!ELEMENT ctpItemList (#PCDATA)> <!ATTLIST ctpItemList %string;>
-<!ELEMENT ctpWord0 (#PCDATA)> <!ATTLIST ctpWord0 %integer;>
-<!ELEMENT ctpWord1 (#PCDATA)> <!ATTLIST ctpWord1 %integer;>
-<!ELEMENT ctpWord2 (#PCDATA)> <!ATTLIST ctpWord2 %integer;>
-<!ELEMENT d0 (#PCDATA)> <!ATTLIST d0 %float;>
-<!ELEMENT dataType (#PCDATA)> <!ATTLIST dataType %integer;>
-<!ELEMENT daughterIndex (#PCDATA)> <!ATTLIST daughterIndex %integer;>
-<!ELEMENT daughterKey (#PCDATA)> <!ATTLIST daughterKey %string;>
-<!ELEMENT daughterPdgId (#PCDATA)> <!ATTLIST daughterPdgId %integer;>
-<!ELEMENT deta (#PCDATA)> <!ATTLIST deta %float;>
-<!ELEMENT dphi (#PCDATA)> <!ATTLIST dphi %float;>
-<!ELEMENT dr (#PCDATA)> <!ATTLIST dr %float;>
-<!ELEMENT driftR (#PCDATA)> <!ATTLIST driftR %float;>
-<!ELEMENT driftSign (#PCDATA)> <!ATTLIST driftSign %integer;>
-<!ELEMENT dx (#PCDATA)> <!ATTLIST dx %float;>
-<!ELEMENT dy (#PCDATA)> <!ATTLIST dy %float;>
-<!ELEMENT dz (#PCDATA)> <!ATTLIST dz %float;>
-<!ELEMENT eloss (#PCDATA)> <!ATTLIST eloss %float;>
-<!ELEMENT emfrac (#PCDATA)> <!ATTLIST emfrac %float;>
-<!ELEMENT emADC (#PCDATA)> <!ATTLIST emADC %integer;>
-<!ELEMENT emBCID (#PCDATA)> <!ATTLIST emBCID %integer;>
-<!ELEMENT emEnergy (#PCDATA)> <!ATTLIST emEnergy %float;>
-<!ELEMENT emRadius (#PCDATA)> <!ATTLIST emRadius %float;>
-<!ELEMENT emWeight (#PCDATA)> <!ATTLIST emWeight %float;>
-<!ELEMENT energy (#PCDATA)> <!ATTLIST energy %float;>
-<!ELEMENT energyEM (#PCDATA)> <!ATTLIST energyEM %float;>
-<!ELEMENT energyTAU (#PCDATA)> <!ATTLIST energyTAU %float;>
-<!ELEMENT energyEtMiss (#PCDATA)> <!ATTLIST energyEtMiss %float;>
-<!ELEMENT energyEx (#PCDATA)> <!ATTLIST energyEx %float;>
-<!ELEMENT energyEy (#PCDATA)> <!ATTLIST energyEy %float;>
-<!ELEMENT energyloss (#PCDATA)> <!ATTLIST energyloss %float;>
-<!ELEMENT energySumEt (#PCDATA)> <!ATTLIST energySumEt %float;>
-<!ELEMENT eOverp (#PCDATA)> <!ATTLIST eOverp %float;>
-<!ELEMENT et (#PCDATA)> <!ATTLIST et %float;>
-<!ELEMENT et37 (#PCDATA)> <!ATTLIST et37 %float;>
-<!ELEMENT eta (#PCDATA)> <!ATTLIST eta %float;>
-<!ELEMENT etaModule (#PCDATA)> <!ATTLIST etaModule %integer;>
-<!ELEMENT etCone (#PCDATA)> <!ATTLIST etCone %float;>
-<!ELEMENT etCone20 (#PCDATA)> <!ATTLIST etCone20 %float;>
-<!ELEMENT etEMCalib (#PCDATA)> <!ATTLIST etEMCalib %float;>
-<!ELEMENT etHad1 (#PCDATA)> <!ATTLIST etHad1 %float;>
-<!ELEMENT etHadCalib (#PCDATA)> <!ATTLIST etHadCalib %float;>
-<!ELEMENT etx (#PCDATA)> <!ATTLIST etx %float;>
-<!ELEMENT ety (#PCDATA)> <!ATTLIST ety %float;>
-<!ELEMENT etConeIsol (#PCDATA)> <!ATTLIST etConeIsol %float;>
-<!ELEMENT f1 (#PCDATA)> <!ATTLIST f1 %float;>
-<!ELEMENT firstHitError (#PCDATA)> <!ATTLIST firstHitError %integer;>
-<!ELEMENT fcorCell (#PCDATA)> <!ATTLIST fcorCell %float;>
-<!ELEMENT fcorDotx (#PCDATA)> <!ATTLIST fcorDotx %float;>
-<!ELEMENT fcorJet (#PCDATA)> <!ATTLIST fcorJet %float;>
-<!ELEMENT fcorJetForCell (#PCDATA)> <!ATTLIST fcorJetForCell %float;>
-<!ELEMENT formatterError (#PCDATA)> <!ATTLIST formatterError %integer;>
-<!ELEMENT fracs1 (#PCDATA)> <!ATTLIST fracs1 %float;>
-<!ELEMENT fracSamplingMax (#PCDATA)> <!ATTLIST fracSamplingMax %float;>
-<!ELEMENT hadADC (#PCDATA)> <!ATTLIST hadADC %integer;>
-<!ELEMENT hadBCID (#PCDATA)> <!ATTLIST hadBCID %integer;>
-<!ELEMENT hadEnergy (#PCDATA)> <!ATTLIST hadEnergy %float;>
-<!ELEMENT hasTrack (#PCDATA)> <!ATTLIST hasTrack %integer;>
-<!ELEMENT hecf (#PCDATA)> <!ATTLIST hecf %float;>
-<!ELEMENT hits (#PCDATA)> <!ATTLIST hits %integer;>
-<!ELEMENT hitsBLayer (#PCDATA)> <!ATTLIST hitsBLayer %integer;>
-<!ELEMENT hitsFull (#PCDATA)> <!ATTLIST hitsFull %string;>
-<!ELEMENT hitsHighThresTRT (#PCDATA)> <!ATTLIST hitsHighThresTRT %integer;>
-<!ELEMENT hitsPixel (#PCDATA)> <!ATTLIST hitsPixel %integer;>
-<!ELEMENT hitsSCT (#PCDATA)> <!ATTLIST hitsSCT %integer;>
-<!ELEMENT hitsTRT (#PCDATA)> <!ATTLIST hitsTRT %integer;>
-<!ELEMENT id (#PCDATA)> <!ATTLIST id %integer;>
-<!ELEMENT identifier (#PCDATA)> <!ATTLIST identifier %string;>
-<!ELEMENT isBad (#PCDATA)> <!ATTLIST isBad %float;>
-<!ELEMENT isEM (#PCDATA)> <!ATTLIST isEM %integer;>
-<!ELEMENT isEMString (#PCDATA)> <!ATTLIST isEMString %string;>
-<!ELEMENT isEMSaturated (#PCDATA)> <!ATTLIST isEMSaturated %integer;>
-<!ELEMENT isGood (#PCDATA)> <!ATTLIST isGood %float;>
-<!ELEMENT isHadSaturated (#PCDATA)> <!ATTLIST isHadSaturated %integer;>
-<!ELEMENT isTau (#PCDATA)> <!ATTLIST isTau %integer;>
-<!ELEMENT isTauString (#PCDATA)> <!ATTLIST isTauString %string;>
-<!ELEMENT isUgly (#PCDATA)> <!ATTLIST isUgly %float;>
-<!ELEMENT isolated (#PCDATA)> <!ATTLIST isolated %integer;>
-<!ELEMENT isolFrac (#PCDATA)> <!ATTLIST isolFrac %float;>
-<!ELEMENT isOutlier (#PCDATA)> <!ATTLIST isOutlier %integer;>
-<!ELEMENT itemListEF (#PCDATA)> <!ATTLIST itemListEF %string;>
-<!ELEMENT itemListL2 (#PCDATA)> <!ATTLIST itemListL2 %string;>
-<!ELEMENT jvf (#PCDATA)> <!ATTLIST jvf %float;>
-<!ELEMENT kine (#PCDATA)> <!ATTLIST kine %integer;>
-<!ELEMENT label (#PCDATA)> <!ATTLIST label %string;>
-<!ELEMENT layer (#PCDATA)> <!ATTLIST layer %integer;>
-<!ELEMENT length (#PCDATA)> <!ATTLIST length %float;>
-<!ELEMENT lhSig (#PCDATA)> <!ATTLIST lhSig %float;>
-<!ELEMENT logLhRatio (#PCDATA)> <!ATTLIST logLhRatio %float;>
-<!ELEMENT lvl1Error (#PCDATA)> <!ATTLIST lvl1Error %integer;>
-<!ELEMENT lwidth (#PCDATA)> <!ATTLIST lwidth %float; >
-<!ELEMENT mass (#PCDATA)> <!ATTLIST mass %float;>
-<!ELEMENT module (#PCDATA)> <!ATTLIST module %integer;>
-<!ELEMENT nbadcells (#PCDATA)> <!ATTLIST nbadcells %integer;>
-<!ELEMENT noise (#PCDATA)> <!ATTLIST noise %integer;>
-<!ELEMENT nBLayerHits (#PCDATA)> <!ATTLIST nBLayerHits %integer;>
-<!ELEMENT nPixHits (#PCDATA)> <!ATTLIST nPixHits %integer;>
-<!ELEMENT nSCTHits (#PCDATA)> <!ATTLIST nSCTHits %integer;>
-<!ELEMENT nTRTHits (#PCDATA)> <!ATTLIST nTRTHits %integer;>
-<!ELEMENT n90cells (#PCDATA)> <!ATTLIST n90cells %integer;>
-<!ELEMENT n90const (#PCDATA)> <!ATTLIST n90const %integer;>
-<!ELEMENT numADC (#PCDATA)> <!ATTLIST numADC %integer;>
-<!ELEMENT numBarcodes (#PCDATA)> <!ATTLIST numBarcodes %integer;>
-<!ELEMENT numCells (#PCDATA)> <!ATTLIST numCells %integer;>
-<!ELEMENT numDoF (#PCDATA)> <!ATTLIST numDoF %integer;>
-<!ELEMENT numHits (#PCDATA)> <!ATTLIST numHits %integer;>
-<!ELEMENT numPolyline (#PCDATA)> <!ATTLIST numPolyline %integer;>
-<!ELEMENT numTracks (#PCDATA)> <!ATTLIST numTracks %integer;>
-<!ELEMENT numTsos (#PCDATA)> <!ATTLIST numTsos %integer;>
-<!ELEMENT passedEF (#PCDATA)> <!ATTLIST passedEF %integer;>
-<!ELEMENT passedL1 (#PCDATA)> <!ATTLIST passedL1 %integer;>
-<!ELEMENT passedL2 (#PCDATA)> <!ATTLIST passedL2 %integer;>
-<!ELEMENT passedTrigger (#PCDATA)> <!ATTLIST passedTrigger %integer;>
-<!ELEMENT pdgId (#PCDATA)> <!ATTLIST pdgId %integer;>
-<!ELEMENT phi (#PCDATA)> <!ATTLIST phi %float;>
-<!ELEMENT phi0 (#PCDATA)> <!ATTLIST phi0 %float;>
-<!ELEMENT phiEndVertex (#PCDATA)> <!ATTLIST phiEndVertex %float;>
-<!ELEMENT phiModule (#PCDATA)> <!ATTLIST phiModule %integer;>
-<!ELEMENT phiVertex (#PCDATA)> <!ATTLIST phiVertex %float;>
-<!ELEMENT pionWeight (#PCDATA)> <!ATTLIST pionWeight %float;>
-<!ELEMENT pmt1Energy (#PCDATA)> <!ATTLIST pmt1Energy %float;>
-<!ELEMENT pmt2Energy (#PCDATA)> <!ATTLIST pmt2Energy %float;>
-<!ELEMENT pmt1Chi2 (#PCDATA)> <!ATTLIST pmt1Chi2 %float;>
-<!ELEMENT pmt2Chi2 (#PCDATA)> <!ATTLIST pmt2Chi2 %float;>
-<!ELEMENT pmt1Time (#PCDATA)> <!ATTLIST pmt1Time %float;>
-<!ELEMENT pmt2Time (#PCDATA)> <!ATTLIST pmt2Time %float;>
-<!ELEMENT cellRawAmplitude (#PCDATA)> <!ATTLIST cellRawAmplitude %float;>
-<!ELEMENT cellRawTime (#PCDATA)> <!ATTLIST cellRawTime %float;>
-<!ELEMENT pmt1RawTime (#PCDATA)> <!ATTLIST pmt1RawTime %float;>
-<!ELEMENT pmt2RawTime (#PCDATA)> <!ATTLIST pmt2RawTime %float;>
-<!ELEMENT pmt1RawAmplitude (#PCDATA)> <!ATTLIST pmt1RawAmplitude %float;>
-<!ELEMENT pmt2RawAmplitude (#PCDATA)> <!ATTLIST pmt2RawAmplitude %float;>
-<!ELEMENT pmt1Gain (#PCDATA)> <!ATTLIST pmt1Gain %integer;>
-<!ELEMENT pmt2Gain (#PCDATA)> <!ATTLIST pmt2Gain %integer;>
-<!ELEMENT pmt1Pedestal (#PCDATA)> <!ATTLIST pmt1Pedestal %float;>
-<!ELEMENT pmt2Pedestal (#PCDATA)> <!ATTLIST pmt2Pedestal %float;>
-<!ELEMENT pmt1Number (#PCDATA)> <!ATTLIST pmt1Number %integer;>
-<!ELEMENT pmt2Number (#PCDATA)> <!ATTLIST pmt2Number %integer;>
-<!ELEMENT pmt1ADCStatus (#PCDATA)> <!ATTLIST pmt1ADCStatus %integer;>
-<!ELEMENT pmt2ADCStatus (#PCDATA)> <!ATTLIST pmt2ADCStatus %integer;>
-<!ELEMENT polylineX (#PCDATA)> <!ATTLIST polylineX %float;>
-<!ELEMENT polylineY (#PCDATA)> <!ATTLIST polylineY %float;>
-<!ELEMENT polylineZ (#PCDATA)> <!ATTLIST polylineZ %float;>
-<!ELEMENT preambleError (#PCDATA)> <!ATTLIST preambleError %integer;>
-<!ELEMENT prescaleListEF (#PCDATA)> <!ATTLIST prescaleListEF %string;>
-<!ELEMENT prescaleListL1 (#PCDATA)> <!ATTLIST prescaleListL1 %string;>
-<!ELEMENT prescaleListL2 (#PCDATA)> <!ATTLIST prescaleListL2 %string;>
-<!ELEMENT vertexType (#PCDATA)> <!ATTLIST vertexType %integer;>
-<!ELEMENT primVxCand (#PCDATA)> <!ATTLIST primVxCand %integer;>
-<!ELEMENT pt (#PCDATA)> <!ATTLIST pt %float;>
-<!ELEMENT px (#PCDATA)> <!ATTLIST px %float;>
-<!ELEMENT py (#PCDATA)> <!ATTLIST py %float;>
-<!ELEMENT pz (#PCDATA)> <!ATTLIST pz %float;>
-<!ELEMENT quality (#PCDATA)> <!ATTLIST quality %float;>
-<!ELEMENT qualityLAr (#PCDATA)> <!ATTLIST qualityLAr %float;>
-<!ELEMENT qualityTile (#PCDATA)> <!ATTLIST qualityTile %float;>
-<!ELEMENT r (#PCDATA)> <!ATTLIST r %float;>
-<!ELEMENT rho (#PCDATA)> <!ATTLIST rho %float;>
-<!ELEMENT rhoEndVertex (#PCDATA)> <!ATTLIST rhoEndVertex %float;>
-<!ELEMENT rhoVertex (#PCDATA)> <!ATTLIST rhoVertex %float;>
-<!ELEMENT rhoz (#PCDATA)> <!ATTLIST rhoz %float;>
-<!ELEMENT roiWord (#PCDATA)> <!ATTLIST roiWord %float;>
-<!ELEMENT sampling (#PCDATA)> <!ATTLIST sampling %integer;>
-<!ELEMENT secondHitError (#PCDATA)> <!ATTLIST secondHitError %integer;>
-<!ELEMENT secVtxCount (#PCDATA)> <!ATTLIST secVtxCount %float;>
-<!ELEMENT secVtxFitProb (#PCDATA)> <!ATTLIST secVtxFitProb %float;>
-<!ELEMENT secVtxMass (#PCDATA)> <!ATTLIST secVtxMass %float;>
-<!ELEMENT secVtxMult (#PCDATA)> <!ATTLIST secVtxMult %integer;>
-<!ELEMENT secVtxRPhiDist (#PCDATA)> <!ATTLIST secVtxRPhiDist %float;>
-<!ELEMENT secVtxTagLh (#PCDATA)> <!ATTLIST secVtxTagLh %float;>
-<!ELEMENT secVtxTagLhErr (#PCDATA)> <!ATTLIST secVtxTagLhErr %float;>
-<!ELEMENT sgkey (#PCDATA)> <!ATTLIST sgkey %string;>
-<!ELEMENT side (#PCDATA)> <!ATTLIST side %integer;>
-<!ELEMENT sigma (#PCDATA)> <!ATTLIST sigma %float;>
-<!ELEMENT sMax (#PCDATA)> <!ATTLIST sMax %float;>
-<!ELEMENT stripWidth (#PCDATA)> <!ATTLIST stripWidth %float;>
-<!ELEMENT sub (#PCDATA)> <!ATTLIST sub %integer;>
-<!ELEMENT sumEnergy (#PCDATA)> <!ATTLIST sumEnergy %float;>
-<!ELEMENT swidth (#PCDATA)> <!ATTLIST swidth %float;>
-<!ELEMENT syncError (#PCDATA)> <!ATTLIST syncError %integer;>
-<!ELEMENT theta (#PCDATA)> <!ATTLIST theta %float;>
-<!ELEMENT threshold (#PCDATA)> <!ATTLIST threshold %integer;>
-<!ELEMENT timeOverThreshold (#PCDATA)> <!ATTLIST timeOverThreshold %float;>
-<!ELEMENT thrName (#PCDATA)> <!ATTLIST thrName %string;>
-<!ELEMENT thrNumber (#PCDATA)> <!ATTLIST thrNumber %float;>
-<!ELEMENT thrValue (#PCDATA)> <!ATTLIST thrValue %float;>
-<!ELEMENT thrPattern (#PCDATA)> <!ATTLIST thrPattern %float;>
-<!ELEMENT tileGap3f (#PCDATA)> <!ATTLIST tileGap3f %float;>
-<!ELEMENT time (#PCDATA)> <!ATTLIST time %float;>
-<!ELEMENT timeClusters (#PCDATA)> <!ATTLIST timeClusters %float;>
-<!ELEMENT timeBin (#PCDATA)> <!ATTLIST timeBin %integer;>
-<!ELEMENT trackAuthor (#PCDATA)> <!ATTLIST trackAuthor %integer;>
-<!ELEMENT trackid (#PCDATA)> <!ATTLIST trackid %integer;>
-<!ELEMENT trackIndex (#PCDATA)> <!ATTLIST trackIndex %integer;>
-<!ELEMENT trackKey (#PCDATA)> <!ATTLIST trackKey %string;>
-<!ELEMENT trackLinkCount (#PCDATA)> <!ATTLIST trackLinkCount %integer;>
-<!ELEMENT tracks (#PCDATA)> <!ATTLIST tracks %integer;>
-<!ELEMENT trigInfoEF (#PCDATA)> <!ATTLIST trigInfoEF %string;>
-<!ELEMENT trigInfoExtL1ID (#PCDATA)> <!ATTLIST trigInfoExtL1ID %string;>
-<!ELEMENT trigInfoL1 (#PCDATA)> <!ATTLIST trigInfoL1 %string;>
-<!ELEMENT trigInfoL2 (#PCDATA)> <!ATTLIST trigInfoL2 %string;>
-<!ELEMENT trigInfoLvl1Type (#PCDATA)> <!ATTLIST trigInfoLvl1Type %string;>
-<!ELEMENT trigInfoStatus (#PCDATA)> <!ATTLIST trigInfoStatus %string;>
-<!ELEMENT trigInfoStreamTag (#PCDATA)> <!ATTLIST trigInfoStreamTag %string;>
-<!ELEMENT tsosDetType (#PCDATA)> <!ATTLIST tsosDetType %string;>
-<!ELEMENT tsosPosR (#PCDATA)> <!ATTLIST tsosPosR %float;>
-<!ELEMENT tsosPullLoc1 (#PCDATA)> <!ATTLIST tsosPullLoc1 %float;>
-<!ELEMENT tsosPullLoc2 (#PCDATA)> <!ATTLIST tsosPullLoc2 %float;>
-<!ELEMENT tsosResLoc1 (#PCDATA)> <!ATTLIST tsosResLoc1 %float;>
-<!ELEMENT tsosResLoc2 (#PCDATA)> <!ATTLIST tsosResLoc2 %float;>
-<!ELEMENT type (#PCDATA)> <!ATTLIST type %integer;>
-<!ELEMENT typeEV (#PCDATA)> <!ATTLIST typeEV %string;>
-<!ELEMENT weight (#PCDATA)> <!ATTLIST weight %float;>
-<!ELEMENT width (#PCDATA)> <!ATTLIST width %float;>
-<!ELEMENT widthside (#PCDATA)> <!ATTLIST widthside %float;>
-<!ELEMENT widthx (#PCDATA)> <!ATTLIST widthx %float;>
-<!ELEMENT widthy (#PCDATA)> <!ATTLIST widthy %float;>
-<!ELEMENT x (#PCDATA)> <!ATTLIST x %float;>
-<!ELEMENT x0 (#PCDATA)> <!ATTLIST x0 %float;>
-<!ELEMENT x1 (#PCDATA)> <!ATTLIST x1 %float;>
-<!ELEMENT y (#PCDATA)> <!ATTLIST y %float;>
-<!ELEMENT y0 (#PCDATA)> <!ATTLIST y0 %float;>
-<!ELEMENT y1 (#PCDATA)> <!ATTLIST y1 %float;>
-<!ELEMENT z (#PCDATA)> <!ATTLIST z %float;>
-<!ELEMENT z0 (#PCDATA)> <!ATTLIST z0 %float;>
-<!ELEMENT z1 (#PCDATA)> <!ATTLIST z1 %float;>
-<!ELEMENT zEndVertex (#PCDATA)> <!ATTLIST zEndVertex %float;>
-<!ELEMENT zVertex (#PCDATA)> <!ATTLIST zVertex %float;>
diff --git a/graphics/AtlantisJava/geometry/AGeometry.xml b/graphics/AtlantisJava/geometry/AGeometry.xml
deleted file mode 100755
index 0d903668879..00000000000
--- a/graphics/AtlantisJava/geometry/AGeometry.xml
+++ /dev/null
@@ -1,233 +0,0 @@
-<?xml version="1.0"?>
-<!DOCTYPE AGeometry [
-<!ELEMENT AGeometry (ADisc | ARectangle | ABarrelCalorimeter |
- AEndcapCalorimeter | AGapCalorimeter |
- ABarrelSiliconDetector | AEndcapSiliconDetector |
- ABarrelTRTDetector | AEndcapTRTDetector)* >
-<!ELEMENT ADisc EMPTY >
-<!ATTLIST ADisc
- p CDATA #REQUIRED
- c CDATA #REQUIRED
- n CDATA #REQUIRED
- rIn CDATA #REQUIRED
- rOut CDATA #REQUIRED
- nIn CDATA "256"
- nOut CDATA "256">
-<!ELEMENT ARectangle EMPTY >
-<!ATTLIST ARectangle
- p CDATA #REQUIRED
- c CDATA #REQUIRED
- n CDATA #REQUIRED
- xMin CDATA #REQUIRED
- xMax CDATA #REQUIRED
- yMin CDATA #REQUIRED
- yMax CDATA #REQUIRED
- xR (YES|NO) "YES"
- yR (YES|NO) "YES">
-<!ELEMENT ABarrelCalorimeter EMPTY >
-<!ATTLIST ABarrelCalorimeter
- c CDATA #REQUIRED
- n CDATA #REQUIRED
- sampling CDATA #REQUIRED
- region CDATA #REQUIRED
- rMin CDATA #REQUIRED
- rMax CDATA #REQUIRED
- zMin CDATA #REQUIRED
- zMax CDATA #REQUIRED
- eta0 CDATA #REQUIRED
- deta CDATA #REQUIRED
- neta CDATA #REQUIRED
- meta CDATA #REQUIRED
- phi0 CDATA #REQUIRED
- nphi CDATA #REQUIRED>
-<!ELEMENT AEndcapCalorimeter EMPTY >
-<!ATTLIST AEndcapCalorimeter
- c CDATA #REQUIRED
- n CDATA #REQUIRED
- sampling CDATA #REQUIRED
- region CDATA #REQUIRED
- rMin CDATA #REQUIRED
- rMax CDATA #REQUIRED
- zMin CDATA #REQUIRED
- zMax CDATA #REQUIRED
- eta0 CDATA #REQUIRED
- deta CDATA #REQUIRED
- neta CDATA #REQUIRED
- meta CDATA #REQUIRED
- phi0 CDATA #REQUIRED
- nphi CDATA #REQUIRED>
-<!ELEMENT AGapCalorimeter EMPTY >
-<!ATTLIST AGapCalorimeter
- c CDATA #REQUIRED
- n CDATA #REQUIRED
- sampling CDATA #REQUIRED
- region CDATA #REQUIRED
- rMin CDATA #REQUIRED
- rMax CDATA #REQUIRED
- zMin CDATA #REQUIRED
- zMax CDATA #REQUIRED
- eta CDATA #REQUIRED
- phi0 CDATA #REQUIRED
- nphi CDATA #REQUIRED>
-<!ELEMENT AEndcapCryostat EMPTY >
-<!ATTLIST AEndcapCryostat
- c CDATA #REQUIRED
- n CDATA #REQUIRED
- sampling CDATA #REQUIRED
- region CDATA #REQUIRED
- rMin CDATA #REQUIRED
- rMax CDATA #REQUIRED
- zMin CDATA #REQUIRED
- zMax CDATA #REQUIRED
- neta CDATA #REQUIRED
- nphi CDATA #REQUIRED>
-<!ELEMENT ABarrelSiliconDetector EMPTY >
-<!ATTLIST ABarrelSiliconDetector
- c CDATA #REQUIRED
- n CDATA #REQUIRED
- layer CDATA #REQUIRED
- length CDATA #REQUIRED
- width CDATA #REQUIRED
- thickness CDATA #REQUIRED
- tilt CDATA #REQUIRED
- nz CDATA #REQUIRED
- nphi CDATA #REQUIRED
- r0 CDATA #REQUIRED
- phi0 CDATA #REQUIRED
- zMin CDATA #REQUIRED
- zMax CDATA #REQUIRED>
-<!ELEMENT AEndcapSiliconDetector EMPTY >
-<!ATTLIST AEndcapSiliconDetector
- c CDATA #REQUIRED
- n CDATA #REQUIRED
- layer CDATA #REQUIRED
- length CDATA #REQUIRED
- width CDATA #REQUIRED
- thickness CDATA #REQUIRED
- nz CDATA #REQUIRED
- nphi CDATA #REQUIRED
- rMin CDATA #REQUIRED
- rMax CDATA #REQUIRED
- phi0 CDATA #REQUIRED
- zMin CDATA #REQUIRED
- zMax CDATA #REQUIRED>
-<!ELEMENT ABarrelTRTDetector EMPTY >
-<!ATTLIST ABarrelTRTDetector
- c CDATA #REQUIRED
- n CDATA #REQUIRED
- layer CDATA #REQUIRED
- nphi CDATA #REQUIRED
- rMin CDATA #REQUIRED
- rMax CDATA #REQUIRED
- phiIn CDATA #REQUIRED
- phiOut CDATA #REQUIRED
- zMin CDATA #REQUIRED
- zMax CDATA #REQUIRED>
-<!ELEMENT AEndcapTRTDetector EMPTY >
-<!ATTLIST AEndcapTRTDetector
- c CDATA #REQUIRED
- n CDATA #REQUIRED
- layer CDATA #REQUIRED
- nphi CDATA #REQUIRED
- rMin CDATA #REQUIRED
- rMax CDATA #REQUIRED
- phi0 CDATA #REQUIRED
- zMin CDATA #REQUIRED
- zMax CDATA #REQUIRED>
-]>
-
-<AGeometry>
-<ABarrelSiliconDetector c="PIX" n="Pixel" layer="0" length="2" width="1.9" thickness="0.270702" tilt="-14.0063" nz="20" nphi="14" r0="3.32803" phi0="22.2819" zMin="-33.6323" zMax="33.6323" />
-<ABarrelSiliconDetector c="PIX" n="Pixel" layer="1" length="6.08" width="1.64" thickness="0.306424" tilt="-19.9962" nz="13" nphi="22" r0="5.10491" phi0="-0.391852" zMin="-40.5702" zMax="40.5702" />
-<ABarrelSiliconDetector c="PIX" n="Pixel" layer="2" length="6.08" width="1.64" thickness="0.307646" tilt="-19.9962" nz="13" nphi="38" r0="8.88103" phi0="-0.12952" zMin="-40.5702" zMax="40.5702" />
-<ABarrelSiliconDetector c="PIX" n="Pixel" layer="3" length="6.08" width="1.64" thickness="0.30793" tilt="-19.9962" nz="13" nphi="52" r0="12.2722" phi0="3.38916" zMin="-40.5702" zMax="40.5702" />
-<AEndcapSiliconDetector c="PIX" n="Pixel" layer="0" length="6.08" width="1.64" thickness="1.51617" nz="1" nphi="48" rMin="8.91479" rMax="14.9795" phi0="3.75" zMin="48.79" zMax="49.79" />
-<AEndcapSiliconDetector c="PIX" n="Pixel" layer="1" length="6.08" width="1.64" thickness="1.51617" nz="1" nphi="48" rMin="8.91479" rMax="14.9795" phi0="3.75" zMin="57.29" zMax="58.29" />
-<AEndcapSiliconDetector c="PIX" n="Pixel" layer="2" length="6.08" width="1.64" thickness="1.51617" nz="1" nphi="48" rMin="8.91479" rMax="14.9795" phi0="3.75" zMin="64.29" zMax="65.29" />
-<ABarrelSiliconDetector c="SIL" n="Silicon" layer="0" length="12.609" width="6.144" thickness="0.83814" tilt="11.0677" nz="6" nphi="32" r0="30.134" phi0="3.24616" zMin="-74.8273" zMax="74.8273" />
-<ABarrelSiliconDetector c="SIL" n="Silicon" layer="1" length="12.609" width="6.144" thickness="0.75531" tilt="11.0546" nz="6" nphi="40" r0="37.2063" phi0="2.63207" zMin="-74.8273" zMax="74.8273" />
-<ABarrelSiliconDetector c="SIL" n="Silicon" layer="2" length="12.609" width="6.144" thickness="0.836751" tilt="11.2967" nz="6" nphi="48" r0="44.4326" phi0="2.10644" zMin="-74.8273" zMax="74.8273" />
-<ABarrelSiliconDetector c="SIL" n="Silicon" layer="3" length="12.609" width="6.144" thickness="0.776445" tilt="11.2902" nz="6" nphi="56" r0="51.4693" phi0="1.80488" zMin="-74.8273" zMax="74.8273" />
-<AEndcapSiliconDetector c="SIL" n="Silicon" layer="0" length="12.1235" width="6.2019" thickness="24.7693" nz="1" nphi="52" rMin="43.8426" rMax="56.2272" phi0="-1.03842" zMin="83.5567" zMax="84.6532" />
-<AEndcapSiliconDetector c="SIL" n="Silicon" layer="0" length="11.77" width="6.31592" thickness="24.099" nz="1" nphi="40" rMin="33.7464" rMax="45.7959" phi0="4.46486" zMin="86.5567" zMax="87.6532" />
-<AEndcapSiliconDetector c="SIL" n="Silicon" layer="1" length="12.1235" width="6.2019" thickness="24.7693" nz="1" nphi="52" rMin="43.8426" rMax="56.2272" phi0="-1.01417" zMin="91.5768" zMax="92.6732" />
-<AEndcapSiliconDetector c="SIL" n="Silicon" layer="1" length="11.77" width="6.31592" thickness="36.6061" nz="2" nphi="40" rMin="27.4929" rMax="45.7959" phi0="4.5" zMin="91.5768" zMax="95.6732" />
-<AEndcapSiliconDetector c="SIL" n="Silicon" layer="2" length="12.1235" width="6.2019" thickness="24.7693" nz="1" nphi="52" rMin="43.8426" rMax="56.2272" phi0="-1.03842" zMin="107.327" zMax="108.423" />
-<AEndcapSiliconDetector c="SIL" n="Silicon" layer="2" length="11.77" width="6.31592" thickness="36.6061" nz="2" nphi="40" rMin="27.4929" rMax="45.7959" phi0="4.46486" zMin="107.327" zMax="111.423" />
-<AEndcapSiliconDetector c="SIL" n="Silicon" layer="3" length="12.1235" width="6.2019" thickness="24.7693" nz="1" nphi="52" rMin="43.8426" rMax="56.2272" phi0="-1.01417" zMin="128.167" zMax="129.263" />
-<AEndcapSiliconDetector c="SIL" n="Silicon" layer="3" length="11.77" width="6.31592" thickness="36.6061" nz="2" nphi="40" rMin="27.4929" rMax="45.7959" phi0="4.5" zMin="128.167" zMax="132.263" />
-<AEndcapSiliconDetector c="SIL" n="Silicon" layer="4" length="12.1235" width="6.2019" thickness="24.7693" nz="1" nphi="52" rMin="43.8426" rMax="56.2272" phi0="-1.03842" zMin="138.147" zMax="139.243" />
-<AEndcapSiliconDetector c="SIL" n="Silicon" layer="4" length="11.77" width="6.31592" thickness="36.6061" nz="2" nphi="40" rMin="27.4929" rMax="45.7959" phi0="4.46486" zMin="138.147" zMax="142.243" />
-<AEndcapSiliconDetector c="SIL" n="Silicon" layer="5" length="12.1235" width="6.2019" thickness="24.7693" nz="1" nphi="52" rMin="43.8426" rMax="56.2272" phi0="-1.01417" zMin="175.317" zMax="176.413" />
-<AEndcapSiliconDetector c="SIL" n="Silicon" layer="5" length="11.77" width="6.31592" thickness="36.6061" nz="2" nphi="40" rMin="27.4929" rMax="45.7959" phi0="4.5" zMin="175.317" zMax="179.413" />
-<AEndcapSiliconDetector c="SIL" n="Silicon" layer="6" length="12.1235" width="6.2019" thickness="24.7693" nz="1" nphi="52" rMin="43.8426" rMax="56.2272" phi0="-1.03842" zMin="209.697" zMax="210.793" />
-<AEndcapSiliconDetector c="SIL" n="Silicon" layer="6" length="11.77" width="6.31592" thickness="24.099" nz="1" nphi="40" rMin="33.7464" rMax="45.7959" phi0="4.46486" zMin="212.697" zMax="213.793" />
-<AEndcapSiliconDetector c="SIL" n="Silicon" layer="7" length="12.1235" width="6.2019" thickness="24.7693" nz="1" nphi="52" rMin="43.8426" rMax="56.2272" phi0="-1.01417" zMin="248.677" zMax="249.773" />
-<AEndcapSiliconDetector c="SIL" n="Silicon" layer="7" length="5.2475" width="6.83547" thickness="11.0247" nz="1" nphi="40" rMin="40.2836" rMax="45.7959" phi0="4.5" zMin="251.677" zMax="252.773" />
-<AEndcapSiliconDetector c="SIL" n="Silicon" layer="8" length="12.1235" width="6.2019" thickness="24.7693" nz="1" nphi="52" rMin="43.8426" rMax="56.2272" phi0="1.01417" zMin="273.747" zMax="274.843" />
-<ABarrelTRTDetector c="TRT" n="TRT" layer="0" nphi="32" rMin="56.7302" rMax="69.8248" phiIn="-6.17382" phiOut="-10.7369" zMin="-70.975" zMax="70.975" />
-<ABarrelTRTDetector c="TRT" n="TRT" layer="1" nphi="32" rMin="70.1346" rMax="86.6458" phiIn="-10.7202" phiOut="-5.99874" zMin="-70.975" zMax="70.975" />
-<ABarrelTRTDetector c="TRT" n="TRT" layer="2" nphi="32" rMin="86.9559" rMax="107.232" phiIn="-6.00171" phiOut="-10.9221" zMin="-70.975" zMax="70.975" />
-<AEndcapTRTDetector c="TRT" n="TRT" layer="0" nphi="34" rMin="64.67" rMax="100.1" phi0="0" zMin="85.85" zMax="98.55" />
-<AEndcapTRTDetector c="TRT" n="TRT" layer="1" nphi="34" rMin="64.67" rMax="100.1" phi0="0" zMin="100.18" zMax="112.88" />
-<AEndcapTRTDetector c="TRT" n="TRT" layer="2" nphi="34" rMin="64.67" rMax="100.1" phi0="0" zMin="114.565" zMax="127.265" />
-<AEndcapTRTDetector c="TRT" n="TRT" layer="3" nphi="34" rMin="64.67" rMax="100.1" phi0="0" zMin="128.86" zMax="141.56" />
-<AEndcapTRTDetector c="TRT" n="TRT" layer="4" nphi="34" rMin="64.67" rMax="100.1" phi0="0" zMin="143.12" zMax="155.82" />
-<AEndcapTRTDetector c="TRT" n="TRT" layer="5" nphi="34" rMin="64.67" rMax="100.1" phi0="0" zMin="157.388" zMax="170.088" />
-<AEndcapTRTDetector c="TRT" n="TRT" layer="6" nphi="34" rMin="64.67" rMax="100.1" phi0="0" zMin="175.008" zMax="185.408" />
-<AEndcapTRTDetector c="TRT" n="TRT" layer="7" nphi="34" rMin="64.67" rMax="100.1" phi0="0" zMin="187.185" zMax="197.585" />
-<AEndcapTRTDetector c="TRT" n="TRT" layer="8" nphi="34" rMin="64.67" rMax="100.1" phi0="0" zMin="199.34" zMax="209.74" />
-<AEndcapTRTDetector c="TRT" n="TRT" layer="9" nphi="34" rMin="64.67" rMax="100.1" phi0="0" zMin="211.49" zMax="221.89" />
-<AEndcapTRTDetector c="TRT" n="TRT" layer="10" nphi="34" rMin="64.67" rMax="100.1" phi0="0" zMin="223.64" zMax="234.04" />
-<AEndcapTRTDetector c="TRT" n="TRT" layer="11" nphi="34" rMin="64.67" rMax="100.1" phi0="0" zMin="235.795" zMax="246.195" />
-<AEndcapTRTDetector c="TRT" n="TRT" layer="12" nphi="34" rMin="64.67" rMax="100.1" phi0="0" zMin="247.96" zMax="258.36" />
-<AEndcapTRTDetector c="TRT" n="TRT" layer="13" nphi="34" rMin="64.67" rMax="100.1" phi0="0" zMin="260.083" zMax="270.483" />
-<ADisc p="YX" c="Sol" n="Solenoid" rIn="122.9" rOut="127.4" />
-<ARectangle p="RZ" c="Sol" n="Solenoid" xMin="-265" xMax="265" yMin="122.9" yMax="127.4" xR="NO" />
-<ABarrelCalorimeter c="ECAL" n="LAr Presampler" sampling="0" region="0" rMin="142.173" rMax="143.858" zMin="0" zMax="325.0" eta0="3.1225e-17" deta="0.025" neta="61" meta="0" phi0="-0.175783" nphi="64" />
-<ABarrelCalorimeter c="ECAL" n="LAr" sampling="1" region="0" rMin="148.175" rMax="158" zMin="0" zMax="325.0" eta0="0.003125" deta="0.003125" neta="447" meta="1" phi0="-0.175783" nphi="64" />
-<ABarrelCalorimeter c="ECAL" n="LAr" sampling="1" region="1" rMin="148.175" rMax="158" zMin="0" zMax="325.0" eta0="1.4" deta="0.025" neta="3" meta="0" phi0="-0.175783" nphi="256" />
-<ABarrelCalorimeter c="ECAL" n="LAr" sampling="2" region="0" rMin="158" rMax="184" zMin="0" zMax="325.0" eta0="0.0" deta="0.025" neta="56" meta="0" phi0="-0.175783" nphi="256" />
-<ABarrelCalorimeter c="ECAL" n="LAr" sampling="2" region="1" rMin="158" rMax="184" zMin="0" zMax="325.0" eta0="1.4" deta="0.075" neta="1" meta="0" phi0="-0.175783" nphi="256" />
-<ABarrelCalorimeter c="ECAL" n="LAr" sampling="3" region="0" rMin="184" rMax="198.47" zMin="0" zMax="325.0" eta0="0.0" deta="0.05" neta="27" meta="0" phi0="-0.175783" nphi="256" />
-<AEndcapCalorimeter c="ECAL" n="LAr Endcap Presampler" sampling="0" region="0" rMin="29.0" rMax="203.4" zMin="368.075" zMax="371.425" eta0="1.50988" deta="0.025" neta="12" meta="0" phi0="-0.234375" nphi="64" />
-<AEndcapCalorimeter c="ECAL" n="LAr Outer Endcap" sampling="1" region="0" rMin="29.0" rMax="203.4" zMin="375.424" zMax="380.073" eta0="1.38444" deta="0.05" neta="1" meta="0" phi0="-0.234375" nphi="64" />
-<AEndcapCalorimeter c="ECAL" n="LAr Outer Endcap" sampling="1" region="1" rMin="29.0" rMax="203.4" zMin="375.424" zMax="380.073" eta0="1.43452" deta="0.025" neta="3" meta="0" phi0="-0.234375" nphi="64" />
-<AEndcapCalorimeter c="ECAL" n="LAr Outer Endcap" sampling="1" region="2" rMin="29.0" rMax="203.4" zMin="375.424" zMax="380.073" eta0="1.50965" deta="0.003125" neta="96" meta="0" phi0="-0.234375" nphi="64" />
-<AEndcapCalorimeter c="ECAL" n="LAr Outer Endcap" sampling="1" region="3" rMin="29.0" rMax="203.4" zMin="375.424" zMax="380.073" eta0="1.81009" deta="0.00416667" neta="48" meta="0" phi0="-0.234375" nphi="64" />
-<AEndcapCalorimeter c="ECAL" n="LAr Outer Endcap" sampling="1" region="4" rMin="29.0" rMax="203.4" zMin="375.424" zMax="380.073" eta0="2.01027" deta="0.00625" neta="64" meta="0" phi0="-0.234375" nphi="64" />
-<AEndcapCalorimeter c="ECAL" n="LAr Outer Endcap" sampling="1" region="5" rMin="29.0" rMax="203.4" zMin="375.424" zMax="380.073" eta0="2.41048" deta="0.025" neta="4" meta="0" phi0="-0.234375" nphi="64" />
-<AEndcapCalorimeter c="ECAL" n="LAr Inner Endcap" sampling="1" region="0" rMin="29.0" rMax="203.4" zMin="375.424" zMax="420.125" eta0="2.51004" deta="0.1" neta="7" meta="0" phi0="-0.234375" nphi="64" />
-<AEndcapCalorimeter c="ECAL" n="LAr Outer Endcap" sampling="2" region="0" rMin="29.0" rMax="203.4" zMin="380.073" zMax="424.326" eta0="1.38381" deta="0.05" neta="7" meta="0" phi0="-0.234375" nphi="256" />
-<AEndcapCalorimeter c="ECAL" n="LAr Outer Endcap" sampling="2" region="1" rMin="29.0" rMax="203.4" zMin="380.073" zMax="415.624" eta0="1.43388" deta="0.025" neta="43" meta="0" phi0="-0.234375" nphi="256" />
-<AEndcapCalorimeter c="ECAL" n="LAr Inner Endcap" sampling="2" region="0" rMin="29.0" rMax="203.4" zMin="420.125" zMax="424.326" eta0="2.5094" deta="0.1" neta="7" meta="0" phi0="-0.234375" nphi="64" />
-<AEndcapCalorimeter c="ECAL" n="LAr Outer Endcap" sampling="3" region="0" rMin="29.0" rMax="203.4" zMin="415.624" zMax="424.326" eta0="1.50867" deta="0.05" neta="20" meta="0" phi0="-0.234375" nphi="256" />
-<AEndcapCalorimeter c="HCAL" n="HEC" sampling="0" region="0" rMin="37.2" rMax="203.4" zMin="435" zMax="463" eta0="1.50824" deta="0.1" neta="10" meta="0" phi0="0" nphi="64" />
-<AEndcapCalorimeter c="HCAL" n="HEC" sampling="0" region="1" rMin="37.2" rMax="203.4" zMin="435" zMax="463" eta0="2.50892" deta="0.2" neta="4" meta="0" phi0="0" nphi="32" />
-<AEndcapCalorimeter c="HCAL" n="HEC" sampling="1" region="0" rMin="48.5" rMax="203.4" zMin="463" zMax="510" eta0="1.50755" deta="0.1" neta="10" meta="0" phi0="0" nphi="64" />
-<AEndcapCalorimeter c="HCAL" n="HEC" sampling="1" region="1" rMin="48.5" rMax="203.4" zMin="463" zMax="510" eta0="2.50817" deta="0.2" neta="3" meta="0" phi0="0" nphi="32" />
-<AEndcapCalorimeter c="HCAL" n="HEC" sampling="2" region="0" rMin="48.5" rMax="203.4" zMin="513" zMax="559" eta0="1.6" deta="0.1" neta="9" meta="1" phi0="0" nphi="64" />
-<AEndcapCalorimeter c="HCAL" n="HEC" sampling="2" region="1" rMin="48.5" rMax="203.4" zMin="513" zMax="559" eta0="2.5" deta="0.2" neta="3" meta="0" phi0="-7.95139e-16" nphi="32" />
-<AEndcapCalorimeter c="HCAL" n="HEC" sampling="3" region="0" rMin="48.5" rMax="203.4" zMin="559" zMax="605" eta0="1.7" deta="0.1" neta="8" meta="2" phi0="-3.97569e-16" nphi="64" />
-<AEndcapCalorimeter c="HCAL" n="HEC" sampling="3" region="1" rMin="48.5" rMax="203.4" zMin="559" zMax="605" eta0="2.5" deta="0.2" neta="4" meta="0" phi0="-7.95139e-16" nphi="32" />
-<ADisc p="YX" c="ECAL" n="FCAL EM" rIn="7.84392" rOut="47.5" />
-<ARectangle p="RZ" c="ECAL" n="FCAL EM" xMin="466.85" xMax="511.85" yMin="7.84392" yMax="47.5" />
-<ADisc p="YX" c="HCAL" n="FCAL HAD 1" rIn="7.90558" rOut="47.5" />
-<ARectangle p="RZ" c="HCAL" n="FCAL HAD 1" xMin="512.3" xMax="557.3" yMin="7.90558" yMax="47.5" />
-<ADisc p="YX" c="HCAL" n="FCAL HAD 2" rIn="7.96007" rOut="47.5" />
-<ARectangle p="RZ" c="HCAL" n="FCAL HAD 2" xMin="559.75" xMax="604.75" yMin="7.96007" yMax="47.5" />
-<ABarrelCalorimeter c="HCAL" n="TILE Barrel" sampling="0" region="0" rMin="229" rMax="260" zMin="0" zMax="282" eta0="0" deta="0.1" neta="10" meta="0" phi0="0" nphi="64" />
-<ABarrelCalorimeter c="HCAL" n="TILE Barrel" sampling="1" region="0" rMin="260" rMax="344" zMin="0" zMax="282" eta0="0" deta="0.1" neta="9" meta="0" phi0="0" nphi="64" />
-<ABarrelCalorimeter c="HCAL" n="TILE Barrel" sampling="2" region="0" rMin="344" rMax="386" zMin="-36.5199" zMax="282" eta0="-0.1" deta="0.2" neta="4" meta="0" phi0="0" nphi="64" />
-<ABarrelCalorimeter c="HCAL" n="Extended TILE" sampling="0" region="0" rMin="229" rMax="260" zMin="355.95" zMax="615" eta0="1.1" deta="0.1" neta="5" meta="11" phi0="0" nphi="64" />
-<ABarrelCalorimeter c="HCAL" n="Extended TILE" sampling="1" region="0" rMin="260" rMax="314" zMin="355.95" zMax="615" eta0="1" deta="0.1" neta="5" meta="10" phi0="0" nphi="64" />
-<ABarrelCalorimeter c="HCAL" n="Extended TILE" sampling="2" region="0" rMin="314" rMax="386" zMin="355.95" zMax="615" eta0="0.9" deta="0.2" neta="2" meta="10" phi0="0" nphi="64" />
-<AGapCalorimeter c="HCAL" n="ITC Gap" sampling="1" region="0" rMin="299" rMax="344" zMin="346.435" zMax="355.92" eta="9" phi0="0" nphi="64" />
-<AGapCalorimeter c="HCAL" n="ITC Gap" sampling="2" region="0" rMin="344" rMax="386" zMin="325.05" zMax="355.95" eta="8" phi0="0" nphi="64" />
-<AGapCalorimeter c="HCAL" n="ITC Gap" sampling="3" region="0" rMin="264.6" rMax="295.9" zMin="354.45" zMax="355.95" eta="10" phi0="0" nphi="64" />
-<AGapCalorimeter c="HCAL" n="ITC Gap" sampling="3" region="0" rMin="230.5" rMax="264.6" zMin="354.45" zMax="355.95" eta="11" phi0="0" nphi="64" />
-<AGapCalorimeter c="HCAL" n="ITC Gap" sampling="3" region="0" rMin="182.7" rMax="230.5" zMin="353.2" zMax="354" eta="13" phi0="0" nphi="64" />
-<AGapCalorimeter c="HCAL" n="ITC Gap" sampling="3" region="0" rMin="146.5" rMax="182.7" zMin="353.2" zMax="354" eta="15" phi0="0" nphi="64" />
-<AEndcapCryostat c="HCAL" n="Minimum Bias Trigger Scintillators" sampling="0" region="0" rMin="15.3" rMax="42.6" zMin="319.187" zMax="321.187" neta="1" nphi="8" />
-<AEndcapCryostat c="HCAL" n="Minimum Bias Trigger Scintillators" sampling="1" region="0" rMin="42.6" rMax="89" zMin="319.187" zMax="321.187" neta="1" nphi="8" />
-</AGeometry>
diff --git a/graphics/AtlantisJava/geometry/AMuonGeometry.xml b/graphics/AtlantisJava/geometry/AMuonGeometry.xml
deleted file mode 100755
index bf6ea122c01..00000000000
--- a/graphics/AtlantisJava/geometry/AMuonGeometry.xml
+++ /dev/null
@@ -1,220 +0,0 @@
-<?xml version="1.0"?>
-<!DOCTYPE AMuonGeometry [
-<!ELEMENT AMuonGeometry (ABox | ATBx | ATrd)*>
-<!ELEMENT ABox EMPTY >
-<!ATTLIST ABox
- n CDATA #REQUIRED
- zi CDATA #REQUIRED
- zo CDATA #REQUIRED
- ri CDATA #REQUIRED
- ro CDATA #REQUIRED
- w CDATA #REQUIRED
- eta CDATA #REQUIRED
- phi CDATA #REQUIRED
- dphi CDATA "0"
- sh CDATA "0"
- RPCi CDATA "0"
- RPCo CDATA "0">
-<!ELEMENT ATBx EMPTY >
-<!ATTLIST ATBx
- n CDATA #REQUIRED
- zi CDATA #REQUIRED
- zo CDATA #REQUIRED
- ri CDATA #REQUIRED
- ro CDATA #REQUIRED
- w CDATA #REQUIRED
- eta CDATA #REQUIRED
- phi CDATA #REQUIRED
- sh CDATA "0"
- dphi CDATA "0"
- RPCi CDATA "0"
- RPCo CDATA "0"
- zis CDATA #REQUIRED
- zos CDATA #REQUIRED
- ws CDATA #REQUIRED
- or CDATA "0">
-<!ELEMENT ATrd EMPTY >
-<!ATTLIST ATrd
- n CDATA #REQUIRED
- zi CDATA #REQUIRED
- zo CDATA #REQUIRED
- ri CDATA #REQUIRED
- ro CDATA #REQUIRED
- wi CDATA #REQUIRED
- wo CDATA #REQUIRED
- eta CDATA #REQUIRED
- phi CDATA #REQUIRED
- dphi CDATA "0"
- sh CDATA "0"
- a CDATA "0">
-]>
-<AMuonGeometry>
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-<ABox n="MDT_BIL" zi="51" zo="124.586" ri="474.091" ro="515.705" w="267.15" eta="1" phi="4" />
-<ABox n="MDT_BIL" zi="56" zo="147.607" ri="525.691" ro="567.305" w="267.15" eta="1" phi="5" />
-<ABox n="MDT_BIL" zi="125" zo="234.628" ri="474.091" ro="515.705" w="267.15" eta="2" phi="1 2 3 4 5 7" />
-<ABox n="MDT_BIL" zi="235" zo="326.607" ri="474.091" ro="515.705" w="267.15" eta="3" phi="1 2 4 5 7" />
-<ABox n="MDT_BIL" zi="235" zo="344.628" ri="474.091" ro="515.705" w="267.15" eta="3" phi="3" />
-<ABox n="MDT_BIL" zi="345" zo="454.628" ri="474.091" ro="515.705" w="267.15" eta="4" phi="1 2 3 4 5" />
-<ABox n="MDT_BIL" zi="345" zo="436.607" ri="474.091" ro="515.705" w="267.15" eta="4" phi="7" />
-<ABox n="MDT_BIL" zi="455" zo="546.607" ri="474.091" ro="515.705" w="267.15" eta="5" phi="1 2 3 4 5" />
-<ABox n="MDT_BIL" zi="437" zo="528.607" ri="474.091" ro="515.705" w="267.15" eta="5" phi="7" />
-<ABox n="MDT_BIL" zi="547" zo="656.628" ri="474.091" ro="515.705" w="267.15" eta="6" phi="1 2 3 5" />
-<ABox n="MDT_BIL" zi="547" zo="638.607" ri="474.091" ro="515.705" w="267.15" eta="6" phi="4 7" />
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-<ABox n="MDT_BIS" zi="203" zo="294.607" ri="440.793" ro="469.207" w="167.15" eta="3" phi="1 2 3 4 5 6 7 8" dphi="22.5" />
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-<ABox n="MDT_BML" zi="15" zo="184.698" ri="675.194" ro="754.205" w="357.6" eta="1" phi="1 2" RPCi="15" RPCo="15" />
-<ABox n="MDT_BML" zi="39" zo="184.67" ri="675.194" ro="754.205" w="357.6" eta="1" phi="3 7" RPCi="15" RPCo="15" />
-<ABox n="MDT_BML" zi="87" zo="184.614" ri="675.194" ro="753.005" w="357.6" eta="1" phi="4 5" RPCi="15" RPCo="15" />
-<ABox n="MDT_BML" zi="63" zo="184.642" ri="675.194" ro="753.005" w="357.6" eta="1" phi="6 8" RPCi="15" RPCo="15" />
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-<ABox n="MDT_BML" zi="525" zo="646.642" ri="675.194" ro="753.005" w="357.6" eta="4" phi="1 2 3 4 5 6 8" RPCi="15" RPCo="15" />
-<ABox n="MDT_BML" zi="647" zo="768.642" ri="675.194" ro="753.005" w="357.6" eta="4" phi="7" RPCi="15" RPCo="15" />
-<ABox n="MDT_BML" zi="647" zo="768.642" ri="675.194" ro="753.005" w="357.6" eta="5" phi="1 2 3 4 5 6 8" RPCi="15" RPCo="15" />
-<ABox n="MDT_BML" zi="769" zo="914.67" ri="675.194" ro="754.205" w="357.6" eta="5" phi="7" RPCi="15" RPCo="15" />
-<ABox n="MDT_BML" zi="769" zo="914.67" ri="675.194" ro="754.205" w="357.6" eta="6" phi="1 2 3 4 5 6 8" RPCi="15" RPCo="15" />
-<ABox n="MDT_BML" zi="918" zo="966" ri="743.8" ro="753.8" w="304" eta="6" phi="7" RPCi="15" RPCo="15" />
-<ABox n="MDT_BML" zi="918" zo="966" ri="743.8" ro="753.8" w="304" eta="7" phi="1 2 3 4 5 6 8" RPCi="15" RPCo="15" />
-<ABox n="MDT_BMS" zi="15" zo="184.698" ri="777.694" ro="842.905" w="309.6" eta="1" phi="1 2 3 4 5 8" dphi="22.5" RPCi="15" RPCo="15" />
-<ABox n="MDT_BMS" zi="185" zo="364.5" ri="777.694" ro="845.705" w="309.6" eta="2" phi="1 2 3 4 5 8" dphi="22.5" RPCi="15" RPCo="15" />
-<ABox n="MDT_BMS" zi="368" zo="513.67" ri="777.694" ro="841.705" w="309.6" eta="3" phi="1 2 3 4 5 8" dphi="22.5" RPCi="15" RPCo="15" />
-<ABox n="MDT_BMS" zi="514" zo="691.35" ri="777.694" ro="851.305" w="309.6" eta="4" phi="1 2 3 4 5 8" dphi="22.5" RPCi="15" RPCo="15" />
-<ABox n="MDT_BMS" zi="692.5" zo="790.114" ri="777.694" ro="841.705" w="309.6" eta="5" phi="1 2 3 4 5 8" dphi="22.5" RPCi="15" RPCo="15" />
-<ABox n="MDT_BMS" zi="790.5" zo="936.17" ri="777.694" ro="842.905" w="309.6" eta="6" phi="1 2 3 4 5 8" dphi="22.5" RPCi="15" RPCo="15" />
-<ABox n="MDT_BOL" zi="15" zo="232.754" ri="924.444" ro="989.055" w="498.6" eta="1" phi="1 2" RPCo="15" />
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-<ABox n="MDT_BOL" zi="87" zo="232.67" ri="924.444" ro="989.055" w="498.6" eta="1" phi="4 5" RPCo="15" />
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-<ABox n="MDT_BOL" zi="233" zo="450.754" ri="924.444" ro="989.055" w="498.6" eta="2" phi="1 2 3 4 5 6 8" RPCo="15" />
-<ABox n="MDT_BOL" zi="233" zo="378.67" ri="924.444" ro="989.055" w="498.6" eta="2" phi="7" RPCo="15" />
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-<ABox n="MDT_BOL" zi="621" zo="838.754" ri="924.444" ro="989.055" w="498.6" eta="4" phi="1 2 3 4 5 6 7 8" RPCo="15" />
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-<ABox n="MDT_BOS" zi="1" zo="218.754" ri="1019.19" ro="1082.46" w="379.6" eta="1" phi="1 2 3 5 8" dphi="22.5" RPCi="15" />
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-<ABox n="MDT_BOS" zi="219" zo="436.754" ri="1019.19" ro="1082.46" w="379.6" eta="2" phi="1 2 3 4 5 8" dphi="22.5" RPCi="15" />
-<ABox n="MDT_BOS" zi="437" zo="654.754" ri="1019.19" ro="1082.46" w="379.6" eta="3" phi="1 2 3 4 5 8" dphi="22.5" RPCi="15" />
-<ABox n="MDT_BOS" zi="655" zo="872.754" ri="1019.19" ro="1082.46" w="379.6" eta="4" phi="1 2 3 4 5 8" dphi="22.5" RPCi="15" />
-<ABox n="MDT_BOS" zi="873" zo="1090.75" ri="1019.19" ro="1082.46" w="379.6" eta="5" phi="1 2 3 4 5 8" dphi="22.5" RPCi="15" />
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-<ABox n="MDT_BEE" zi="877.9" zo="1023.57" ri="433.023" ro="452.33" w="91.15" eta="1" phi="1 2 3 4 5 6 7 8" dphi="22.5" />
-<ABox n="MDT_BEE" zi="1023.9" zo="1169.57" ri="433.023" ro="452.33" w="91.15" eta="2" phi="1 2 3 4 5 6 7 8" dphi="22.5" />
-<ABox n="MDT_BIR" zi="52" zo="143.607" ri="592.407" ro="634.021" w="267.15" eta="1" phi="6" sh="11.65" />
-<ABox n="MDT_BIR" zi="52" zo="143.607" ri="592.407" ro="634.021" w="267.15" eta="1" phi="8" sh="-11.65" />
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-<ABox n="MDT_BIR" zi="616" zo="725.628" ri="594.083" ro="635.697" w="110.55" eta="6" phi="8" sh="-46.85" />
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-<ABox n="MDT_BMF" zi="406" zo="599.726" ri="777.694" ro="841.705" w="309.6" eta="2" phi="6 7" dphi="22.5" RPCi="15" RPCo="15" />
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-<ABox n="MDT_BOF" zi="62.57" zo="280.324" ri="1028.19" ro="1093.06" w="379.6" eta="1" phi="6 7" dphi="22.5" RPCo="15" />
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-<ABox n="MDT_BOF" zi="1002.6" zo="1124.24" ri="1028.19" ro="1106.21" w="379.6" eta="4" phi="6 7" dphi="22.5" RPCo="15" />
-<ABox n="MDT_BOG" zi="-60.821" zo="60.8208" ri="1028.19" ro="1093.06" w="379.6" eta="0" phi="6 7" dphi="22.5" RPCo="15" />
-<ABox n="MDT_BOG" zi="282.07" zo="403.712" ri="1028.19" ro="1093.06" w="379.6" eta="1" phi="6 7" dphi="22.5" RPCo="15" />
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-<ABox n="MDT_BOG" zi="877.14" zo="998.782" ri="1028.19" ro="1106.21" w="379.6" eta="3" phi="6 7" dphi="22.5" RPCo="15" />
-<ABox n="MDT_BOG" zi="1147.2" zo="1268.84" ri="1028.19" ro="1106.21" w="379.6" eta="4" phi="6 7" dphi="22.5" RPCo="15" />
-<ATrd n="MDT_EIL1" zi="749.146" zo="785.86" ri="207.6" ro="317.228" wi="132.15" wo="186.9" eta="1" phi="1 2 3 4 5 6 7 8" />
-<ATrd n="MDT_EIL2" zi="749.146" zo="785.86" ri="319.1" ro="428.728" wi="186.15" wo="240.9" eta="2" phi="1 2 3 4 5 6 7 8" />
-<ATrd n="MDT_EIL3" zi="749.146" zo="785.86" ri="427.23" ro="464.774" wi="207.15" wo="207.15" eta="3" phi="1 2 3 4 5 7" />
-<ATrd n="MDT_EIL3" zi="749.146" zo="785.86" ri="427.535" ro="465.079" wi="174.15" wo="174.15" eta="3" phi="6" sh="-16.5" />
-<ATrd n="MDT_EIL3" zi="749.146" zo="785.86" ri="427.535" ro="465.079" wi="174.15" wo="174.15" eta="3" phi="8" sh="16.5" />
-<ATrd n="MDT_EIL4" zi="745.796" zo="782.51" ri="472" ro="509.544" wi="153.65" wo="153.65" eta="4" phi="1 5" />
-<ATrd n="MDT_EIL4" zi="745.796" zo="782.51" ri="472" ro="635.691" wi="235.15" wo="316.9" eta="4" phi="2 3 7" />
-<ATrd n="MDT_EIL4" zi="745.796" zo="782.51" ri="473.105" ro="636.796" wi="165.15" wo="246.9" eta="4" phi="4" sh="35" />
-<ATrd n="MDT_EIL4" zi="745.796" zo="782.51" ri="511.445" ro="639.094" wi="128.15" wo="191.9" eta="4" phi="6" sh="-62.5" />
-<ATrd n="MDT_EIL4" zi="745.796" zo="782.51" ri="511.445" ro="639.094" wi="128.15" wo="191.9" eta="4" phi="8" sh="62.5" />
-<ATrd n="MDT_EIL5" zi="745.796" zo="782.51" ri="508.04" ro="635.689" wi="253.15" wo="316.9" eta="5" phi="1 5" />
-<ATrd n="MDT_EEL1" zi="1116.5" zo="1148.11" ri="651.3" ro="772.942" wi="336.15" wo="396.9" eta="1" phi="1 2 4 5 6 7 8" />
-<ATrd n="MDT_EEL1" zi="1066.09" zo="1097.7" ri="671.8" ro="817.47" wi="244.65" wo="288.3" eta="1" phi="3" />
-<ATrd n="MDT_EEL2" zi="1116.5" zo="1148.11" ri="774.97" ro="896.612" wi="396.15" wo="456.9" eta="2" phi="1 2 4 5 6 7 8" />
-<ATrd n="MDT_EES1" zi="1011.9" zo="1043.51" ri="589.3" ro="734.97" wi="201.45" wo="245.1" eta="1" phi="1 2 3 4 5 6 7 8" dphi="22.5" />
-<ATrd n="MDT_EES2" zi="1011.9" zo="1043.51" ri="737" ro="858.642" wi="244.65" wo="281.1" eta="2" phi="1 2 3 4 5 6 7 8" dphi="22.5" />
-<ATrd n="MDT_EML1" zi="1411.25" zo="1447.66" ri="177" ro="346.698" wi="118.65" wo="203.4" eta="1" phi="1 2 3 4 5 6 7 8" />
-<ATrd n="MDT_EML2" zi="1411.25" zo="1447.66" ri="348.5" ro="542.226" wi="202.65" wo="299.4" eta="2" phi="1 2 3 4 5 6 7 8" />
-<ATrd n="MDT_EML3" zi="1411.25" zo="1447.66" ri="544" ro="737.726" wi="298.65" wo="395.4" eta="3" phi="1 2 3 4 5 6 7 8" />
-<ATrd n="MDT_EML4" zi="1411.25" zo="1447.66" ri="739.5" ro="933.226" wi="394.65" wo="491.4" eta="4" phi="1 2 3 4 5 6 7 8" />
-<ATrd n="MDT_EML5" zi="1411.25" zo="1447.66" ri="935" ro="1128.73" wi="490.65" wo="587.4" eta="5" phi="1 2 3 4 5 6 7 8" />
-<ATrd n="MDT_EMS1" zi="1369.65" zo="1406.06" ri="177" ro="370.726" wi="83.55" wo="141.6" eta="1" phi="1 2 3 4 5 6 7 8" dphi="22.5" />
-<ATrd n="MDT_EMS2" zi="1369.65" zo="1406.06" ri="372.5" ro="566.226" wi="141.15" wo="199.2" eta="2" phi="1 2 3 4 5 6 7 8" dphi="22.5" />
-<ATrd n="MDT_EMS3" zi="1369.65" zo="1406.06" ri="568" ro="761.726" wi="198.75" wo="256.8" eta="3" phi="1 2 3 4 5 6 7 8" dphi="22.5" />
-<ATrd n="MDT_EMS4" zi="1369.65" zo="1406.06" ri="763.5" ro="957.226" wi="256.35" wo="314.4" eta="4" phi="1 2 3 4 5 6 7 8" dphi="22.5" />
-<ATrd n="MDT_EMS5" zi="1369.65" zo="1406.06" ri="959" ro="1152.73" wi="313.95" wo="372" eta="5" phi="1 2 3 4 5 6 7 8" dphi="22.5" />
-<ATrd n="MDT_EOL1" zi="2124.25" zo="2160.66" ri="277" ro="446.698" wi="168.15" wo="252.9" eta="1" phi="1 2 3 4 5 6 7 8" />
-<ATrd n="MDT_EOL2" zi="2124.25" zo="2160.66" ri="448.5" ro="618.198" wi="264.15" wo="348.9" eta="2" phi="1 2 3 4 5 6 7 8" />
-<ATrd n="MDT_EOL3" zi="2124.25" zo="2160.66" ri="620" ro="765.67" wi="348.15" wo="420.9" eta="3" phi="1 2 3 4 5 6 7 8" />
-<ATrd n="MDT_EOL4" zi="2124.25" zo="2160.66" ri="767.5" ro="913.17" wi="420.15" wo="492.9" eta="4" phi="1 2 3 4 5 6 7 8" />
-<ATrd n="MDT_EOL5" zi="2124.25" zo="2160.66" ri="915" ro="1060.67" wi="492.15" wo="564.9" eta="5" phi="1 2 3 4 5 6 7 8" />
-<ATrd n="MDT_EOL6" zi="2124.25" zo="2160.66" ri="1062.5" ro="1208.17" wi="564.15" wo="636.9" eta="6" phi="1 2 3 4 5 6 7 8" />
-<ATrd n="MDT_EOS1" zi="2165.85" zo="2202.26" ri="277" ro="446.698" wi="124.95" wo="175.8" eta="1" phi="1 2 3 4 5 6 7 8" dphi="22.5" />
-<ATrd n="MDT_EOS2" zi="2165.85" zo="2202.26" ri="448.5" ro="618.198" wi="175.35" wo="226.2" eta="2" phi="1 2 3 4 5 6 7 8" dphi="22.5" />
-<ATrd n="MDT_EOS3" zi="2165.85" zo="2202.26" ri="620" ro="789.698" wi="225.75" wo="276.6" eta="3" phi="1 2 3 4 5 6 7 8" dphi="22.5" />
-<ATrd n="MDT_EOS4" zi="2165.85" zo="2202.26" ri="791.5" ro="937.17" wi="276.15" wo="319.8" eta="4" phi="1 2 3 4 5 6 7 8" dphi="22.5" />
-<ATrd n="MDT_EOS5" zi="2165.85" zo="2202.26" ri="939" ro="1084.67" wi="319.35" wo="363" eta="5" phi="1 2 3 4 5 6 7 8" dphi="22.5" />
-<ATrd n="MDT_EOS6" zi="2165.85" zo="2202.26" ri="1086.5" ro="1232.17" wi="362.55" wo="406.2" eta="6" phi="1 2 3 4 5 6 7 8" dphi="22.5" />
-<ATrd n="TGC_T1F1" zi="1327.15" zo="1334.15" ri="190" ro="397.54" wi="57.69" wo="112.34" eta="1" phi="1 3 5 7 9 11 13 15 17 19 21 23" dphi="7.5" />
-<ATrd n="TGC_T1F1" zi="1345.05" zo="1352.05" ri="190" ro="397.54" wi="57.69" wo="112.34" eta="1" phi="2 4 6 8 10 12 14 16 18 20 22 24" dphi="7.5" />
-<ATrd n="TGC_T1E1" zi="1345.05" zo="1359.95" ri="388" ro="1068.2" wi="64.49" wo="154.85" eta="1" phi="1 3 5 7 9 11 13 15 17 19 21 23 25 27 29 31 33 35 37 39 41 43 45 47" dphi="3.75" />
-<ATrd n="TGC_T1E1" zi="1327.15" zo="1342.05" ri="388" ro="1068.2" wi="64.49" wo="154.85" eta="1" phi="2 4 6 8 10 12 14 16 18 20 22 24 26 28 30 32 34 36 38 40 42 44 46 48" dphi="3.75" />
-<ATrd n="TGC_T2F1" zi="1460.05" zo="1464.42" ri="252.59" ro="432.15" wi="75.51" wo="122.78" eta="1" phi="1 3 5 7 9 11 13 15 17 19 21 23" dphi="7.5" />
-<ATrd n="TGC_T2F1" zi="1475.55" zo="1479.92" ri="252.59" ro="432.15" wi="75.51" wo="122.78" eta="1" phi="2 4 6 8 10 12 14 16 18 20 22 24" dphi="7.5" />
-<ATrd n="TGC_T2E1" zi="1475.55" zo="1485.42" ri="418.4" ro="1191.7" wi="68.47" wo="170.84" eta="1" phi="1 3 5 7 9 11 13 15 17 19 21 23 25 27 29 31 33 35 37 39 41 43 45 47" dphi="3.75" />
-<ATrd n="TGC_T2E1" zi="1460.05" zo="1469.92" ri="418.4" ro="1191.7" wi="68.47" wo="170.84" eta="1" phi="2 4 6 8 10 12 14 16 18 20 22 24 26 28 30 32 34 36 38 40 42 44 46 48" dphi="3.75" />
-<ATrd n="TGC_T3F1" zi="1502.05" zo="1506.42" ri="261" ro="440.56" wi="75.51" wo="122.79" eta="1" phi="1 3 5 7 9 11 13 15 17 19 21 23" dphi="7.5" />
-<ATrd n="TGC_T3F1" zi="1517.55" zo="1521.92" ri="261" ro="440.56" wi="75.51" wo="122.79" eta="1" phi="2 4 6 8 10 12 14 16 18 20 22 24" dphi="7.5" />
-<ATrd n="TGC_T3E1" zi="1517.55" zo="1527.42" ri="436.56" ro="1191.7" wi="70.84" wo="170.84" eta="1" phi="1 3 5 7 9 11 13 15 17 19 21 23 25 27 29 31 33 35 37 39 41 43 45 47" dphi="3.75" />
-<ATrd n="TGC_T3E1" zi="1502.05" zo="1511.92" ri="436.56" ro="1191.7" wi="70.84" wo="170.84" eta="1" phi="2 4 6 8 10 12 14 16 18 20 22 24 26 28 30 32 34 36 38 40 42 44 46 48" dphi="3.75" />
-<ATrd n="TGC_T4F1" zi="698.06" zo="702.43" ri="217" ro="443.4" wi="62.38" wo="121.99" eta="1" phi="1 3 4 6 7 9 10 12 13 15 16 18 19 21 22 24" dphi="7.5" />
-<ATrd n="TGC_T4F1" zi="693.04" zo="697.41" ri="217" ro="433.4" wi="62.38" wo="119.36" eta="1" phi="2 5 8 11 14 17 20 23" dphi="7.5" />
-<ATrd n="TGC_T4E1" zi="730.87" zo="735.24" ri="470" ro="619" wi="83.33" wo="108.09" eta="1" phi="1 4 7" />
-<ATrd n="TGC_T4E1" zi="737.53" zo="741.9" ri="520" ro="619" wi="91.64" wo="108.09" eta="1" phi="2" dphi="-5.5" />
-<ATrd n="TGC_T4E1" zi="737.53" zo="741.9" ri="470" ro="619" wi="83.33" wo="108.09" eta="1" phi="3 6" dphi="5.5" />
-<ATrd n="TGC_T4E1" zi="737.53" zo="741.9" ri="470" ro="619" wi="83.33" wo="108.09" eta="1" phi="5 8" dphi="-5.5" />
-<ATrd n="TGC_T4E1" zi="730.87" zo="735.24" ri="470" ro="619" wi="83.33" wo="108.09" eta="1" phi="9 12" dphi="15" />
-<ATrd n="TGC_T4E1" zi="737.53" zo="741.9" ri="470" ro="619" wi="83.33" wo="108.09" eta="1" phi="10" dphi="9.5" />
-<ATrd n="TGC_T4E1" zi="737.53" zo="741.9" ri="520" ro="619" wi="91.64" wo="108.09" eta="1" phi="11 14" dphi="20.5" />
-<ATrd n="TGC_T4E1" zi="737.53" zo="741.9" ri="520" ro="619" wi="91.64" wo="108.09" eta="1" phi="13" dphi="9.5" />
-<ATrd n="TGC_T4E1" zi="730.87" zo="735.24" ri="520" ro="619" wi="91.64" wo="108.09" eta="1" phi="15" dphi="15" />
-<ATrd n="TGC_T4E1" zi="737.53" zo="741.9" ri="470" ro="619" wi="83.33" wo="108.09" eta="1" phi="16" dphi="35.5" />
-<ATrd n="TGC_T4E1" zi="730.87" zo="735.24" ri="470" ro="619" wi="83.33" wo="108.09" eta="1" phi="17" dphi="30" />
-<ATrd n="TGC_T4E1" zi="737.53" zo="741.9" ri="470" ro="619" wi="83.33" wo="108.09" eta="1" phi="18" dphi="24.5" />
-<ATrd n="TGC_T4E1" zi="730.87" zo="735.24" ri="520" ro="619" wi="91.64" wo="108.09" eta="1" phi="19" dphi="45" />
-<ATrd n="TGC_T4E1" zi="737.53" zo="741.9" ri="520" ro="619" wi="91.64" wo="108.09" eta="1" phi="20" dphi="39.5" />
-<ATrd n="TGC_T4E1" zi="737.53" zo="741.9" ri="520" ro="619" wi="91.64" wo="108.09" eta="1" phi="21" dphi="50.5" />
-<ATrd n="MDT_EIS1" zi="707.746" zo="744.46" ri="207.6" ro="335.249" wi="89.85" wo="128.1" eta="1" phi="1 2 3 4 5 6 7 8" dphi="22.5" />
-<ATrd n="MDT_EIS2" zi="707.746" zo="744.46" ri="337.1" ro="446.728" wi="127.65" wo="160.5" eta="2" phi="1 2 3 4 5 6 7 8" dphi="22.5" />
-<ATrd n="CSC_CSS1" zi="708.102" zo="738.022" ri="86.6016" ro="207.832" wi="40.29" wo="75.7865" eta="1" phi="1 2 3 4 5 6 7 8" dphi="22.5" a="-11.587" />
-<ATrd n="CSC_CSL1" zi="744.539" zo="774.459" ri="92.0422" ro="206.732" wi="61.01" wo="117.027" eta="1" phi="1 2 3 4 5 6 7 8" a="-11.587" />
-<ABox n="MDT_BIM" zi="107" zo="216.628" ri="519.465" ro="561.079" w="153.65" eta="1" phi="6" sh="-56.6" />
-<ABox n="MDT_BIM" zi="107" zo="216.628" ri="519.465" ro="561.079" w="153.65" eta="1" phi="8" sh="56.6" />
-<ABox n="MDT_BIM" zi="217" zo="326.628" ri="519.465" ro="561.079" w="153.65" eta="2" phi="6" sh="-56.6" />
-<ABox n="MDT_BIM" zi="217" zo="326.628" ri="519.465" ro="561.079" w="153.65" eta="2" phi="8" sh="56.6" />
-<ABox n="MDT_BIM" zi="327" zo="436.628" ri="519.465" ro="561.079" w="153.65" eta="3" phi="6" sh="-56.6" />
-<ABox n="MDT_BIM" zi="327" zo="436.628" ri="519.465" ro="561.079" w="153.65" eta="3" phi="8" sh="56.6" />
-<ABox n="MDT_BIM" zi="437" zo="546.628" ri="519.465" ro="561.079" w="153.65" eta="4" phi="6" sh="-56.6" />
-<ABox n="MDT_BIM" zi="437" zo="546.628" ri="519.465" ro="561.079" w="153.65" eta="4" phi="8" sh="56.6" />
-<ABox n="MDT_BIM" zi="547" zo="656.628" ri="519.465" ro="561.079" w="153.65" eta="5" phi="6" sh="-56.6" />
-<ABox n="MDT_BIM" zi="547" zo="656.628" ri="519.465" ro="561.079" w="153.65" eta="5" phi="8" sh="56.6" />
-</AMuonGeometry>
diff --git a/graphics/AtlantisJava/geometry/ATLAS_IDS.xml b/graphics/AtlantisJava/geometry/ATLAS_IDS.xml
deleted file mode 100755
index 81f4d7c3a44..00000000000
--- a/graphics/AtlantisJava/geometry/ATLAS_IDS.xml
+++ /dev/null
@@ -1,27 +0,0 @@
-<?xml version="1.0"?>
-<!DOCTYPE IdDict SYSTEM "IdDict.dtd" [
- <!ENTITY InnerDetector SYSTEM "IdDictInnerDetector.xml">
- <!ENTITY LArCalorimeter SYSTEM "IdDictLArCalorimeter.xml">
- <!ENTITY TileCalorimeter SYSTEM "IdDictTileCalorimeter.xml">
- <!ENTITY Calorimeter SYSTEM "IdDictCalorimeter.xml">
- <!ENTITY MuonSpectrometer SYSTEM "IdDictMuonSpectrometer.xml">
- <!ENTITY ATLAS SYSTEM "IdDictATLAS.xml">
- <!ENTITY LArHighVoltage SYSTEM "IdDictLArHighVoltage.xml">
- <!ENTITY LArElectrode SYSTEM "IdDictLArElectrode.xml">
- <!ENTITY ForwardDetectors SYSTEM "IdDictForwardDetectors.xml">
-]>
-
-<IdDict IdDictVersion="v1">
-
-&InnerDetector;
-&LArCalorimeter;
-&TileCalorimeter;
-&Calorimeter;
-&MuonSpectrometer;
-&ATLAS;
-&LArHighVoltage;
-&LArElectrode;
-&ForwardDetectors;
-
-</IdDict>
-
diff --git a/graphics/AtlantisJava/geometry/IdDict.dtd b/graphics/AtlantisJava/geometry/IdDict.dtd
deleted file mode 100755
index 5077ec98a63..00000000000
--- a/graphics/AtlantisJava/geometry/IdDict.dtd
+++ /dev/null
@@ -1,118 +0,0 @@
-<?xml encoding="US-ASCII"?>
-
-<!-- IdDict: Identifier Dictionary
- ==========================
-
- o This describes the possible identifier ranges.
-
- o One may describe several identifier dictionaries, each by a IdDictionary element.
- A dictionary is identified by its name.
-
- o Each dictionary may describe :
-
- + individual identifier fields ("field").
-
- - This is useful when the field values are individually labelled.
- - purely numeric fields do not need to be explicitly
- described, in which case, their possible ranges will be deduced from the defined
- regions.
-
- + identifier regions ("region").
-
- - they are the alternate identifier ranges for this dictionary.
- - a region specifies a contiguous range of identifiers, complete for the dictionary.
- - it may be labelled with a "name".
- - it may also have a "tag" (see alternate regions)
- - it contains the ordered list of fields with their explicit value range.
- - each entry in this list may be
- - a range assigned to a given field ("range")
- - a reference to a subregion ("reference") (see below)
- - a reference to a complete identifier domain ("identifiers")
- - a list of alternative ranges which are differentiated according
- to their tag ("alternate_ranges")
-
- + alternate regions ("alternate_regions").
-
- - this contains two or more alternate region specifications
- which are differentiated by their "tag". An empty tag is
- default. This allows at generation time to select a specific
- tag.
-
- + subregions ("subregion")
-
- - A subregion speficies a contiguous range of identifiers, describing a
- subset of the identifier fields in the dictionary.
- - it must identified by a name.
- - the role of subregions is to be referenced by regions, and they typically describe
- the parts that are common to several regions.
-
--->
-
-
-
-<!ENTITY % DTD_constraint 'IdDictVersion ( v1 ) #REQUIRED'>
-
-<!ELEMENT IdDict ( IdDictionary )* >
-<!ATTLIST IdDict
- %DTD_constraint;>
-
-<!ELEMENT IdDictionary ( field | subregion | region | alternate_regions )* >
-<!ATTLIST IdDictionary
- name ID #REQUIRED
- version CDATA #IMPLIED
- date CDATA #IMPLIED
- author CDATA #IMPLIED>
-
-
-<!ELEMENT field ( label )* >
-<!ATTLIST field
- name CDATA #REQUIRED >
-
-<!ELEMENT label EMPTY>
-<!ATTLIST label
- name CDATA #REQUIRED
- value CDATA #IMPLIED>
-
-<!ELEMENT alternate_regions ( region )* >
-<!ATTLIST alternate_regions
- name CDATA #IMPLIED>
-
-<!ELEMENT region ( range | reference | dictionary )* >
-<!ATTLIST region
- name CDATA #IMPLIED
- group CDATA #IMPLIED
- tag CDATA #IMPLIED
- next_abs_eta CDATA #IMPLIED
- prev_samp CDATA #IMPLIED
- next_samp CDATA #IMPLIED
- prev_subdet CDATA #IMPLIED
- next_subdet CDATA #IMPLIED
- eta0 CDATA #IMPLIED
- deta CDATA #IMPLIED
- phi0 CDATA #IMPLIED
- dphi CDATA #IMPLIED>
-
-<!ELEMENT range EMPTY>
-<!ATTLIST range
- field CDATA #REQUIRED
- value CDATA #IMPLIED
- minvalue CDATA #IMPLIED
- maxvalue CDATA #IMPLIED
- values CDATA #IMPLIED
- prev_value CDATA #IMPLIED
- next_value CDATA #IMPLIED
- wraparound (TRUE | false) "false">
-
-<!ELEMENT reference EMPTY>
-<!ATTLIST reference
- subregion IDREF #REQUIRED>
-
-<!ELEMENT dictionary EMPTY>
-<!ATTLIST dictionary
- name IDREF #REQUIRED>
-
-<!ELEMENT subregion ( range | reference | dictionary )* >
-<!ATTLIST subregion
- name ID #REQUIRED>
-
-
diff --git a/graphics/AtlantisJava/geometry/IdDictATLAS.xml b/graphics/AtlantisJava/geometry/IdDictATLAS.xml
deleted file mode 100755
index 95314ee2c0d..00000000000
--- a/graphics/AtlantisJava/geometry/IdDictATLAS.xml
+++ /dev/null
@@ -1,56 +0,0 @@
-
-<IdDictionary name="ATLAS">
-
- <field name="subdet">
- <label name="InnerDetector" value="2" />
- <label name="LArCalorimeter" value="4" />
- <label name="TileCalorimeter" value="5" />
- <label name="MuonSpectrometer" value="7" />
- <label name="Calorimeter" value="10" />
- <label name="LArHighVoltage" value="11" />
- <label name="LArElectrode" value="12" />
- <label name="ForwardDetectors" value="13" />
- </field>
-
- <region>
- <range field="subdet" value="InnerDetector" />
- <dictionary name="InnerDetector" />
- </region>
-
- <region>
- <range field="subdet" value="LArCalorimeter" />
- <dictionary name="LArCalorimeter" />
- </region>
-
- <region>
- <range field="subdet" value="TileCalorimeter" />
- <dictionary name="TileCalorimeter" />
- </region>
-
- <region>
- <range field="subdet" value="MuonSpectrometer" />
- <dictionary name="MuonSpectrometer" />
- </region>
-
- <region>
- <range field="subdet" value="Calorimeter" />
- <dictionary name="Calorimeter" />
- </region>
-
- <region>
- <range field="subdet" value="LArHighVoltage" />
- <dictionary name="LArHighVoltage" />
- </region>
-
- <region>
- <range field="subdet" value="LArElectrode" />
- <dictionary name="LArElectrode" />
- </region>
-
- <region>
- <range field="subdet" value="ForwardDetectors" />
- <dictionary name="ForwardDetectors" />
- </region>
-
-</IdDictionary>
-
diff --git a/graphics/AtlantisJava/geometry/IdDictCalorimeter.xml b/graphics/AtlantisJava/geometry/IdDictCalorimeter.xml
deleted file mode 100755
index f94f801d91e..00000000000
--- a/graphics/AtlantisJava/geometry/IdDictCalorimeter.xml
+++ /dev/null
@@ -1,731 +0,0 @@
-
-<IdDictionary name="Calorimeter" >
-
-
-<field name="DetZside" >
- <label name="negative_DMTile_side" value="-5" />
- <label name="negative_DMLar_side" value="-4" />
- <label name="negative_eta_side" value="-2" />
- <label name="negative_lvl1_side" value="-1" />
- <label name="positive_lvl1_side" value="+1" />
- <label name="positive_eta_side" value="+2" />
- <label name="positive_DMLar_side" value="+4" />
- <label name="positive_DMTile_side" value="+5" />
-</field>
-
-
-<!-- Dead Material Types -->
-<!-- xxxxxxxxxxxxxxxxxxxx -->
-
-<!-- 3 types of LAr Dead Material -->
-
- <subregion name="DMLArOutside" >
- <range field="DetZside" values="negative_DMLar_side positive_DMLar_side" />
- <range field="DMvalue" value="1" />
- </subregion>
-
- <subregion name="DMLarInside" >
- <range field="DetZside" values="negative_DMLar_side positive_DMLar_side" />
- <range field="DMvalue" value="2" />
- </subregion>
-
- <subregion name="DMLArBeamTest">
- <range field="DetZside" values="negative_DMLar_side positive_DMLar_side" />
- <range field="DMvalue" value="3" />
- </subregion>
-
-<!-- 2 types of Tile Dead Material -->
-
- <subregion name="DMTileOutside" >
- <range field="DetZside" values="negative_DMTile_side positive_DMTile_side" />
- <range field="DMvalue" value="1" />
- </subregion>
-
- <subregion name="DMTileDefHits" >
- <range field="DetZside" values="negative_DMTile_side positive_DMTile_side" />
- <range field="DMvalue" value="2" />
- </subregion>
-
- <subregion name="DMTileBeamTest" >
- <range field="DetZside" values="negative_DMTile_side positive_DMTile_side" />
- <range field="DMvalue" value="3" />
- </subregion>
-
-
-
-<!-- Dead Material Phi regions -->
-<!-- xxxxxxxxxxxxxxxxxxxxxxxxxx -->
-
-<!-- 3 types of Phi region -->
-
- <subregion name="DMPhi-1" >
- <range field="phivalue" minvalue="0" maxvalue="63" wraparound="TRUE" />
- </subregion>
-
- <subregion name="DMPhi-2" >
- <range field="phivalue" minvalue="0" maxvalue="31" wraparound="TRUE" />
- </subregion>
-
- <subregion name="DMPhi-3" >
- <range field="phivalue" value="0" wraparound="TRUE" />
- </subregion>
-
-
-
-<!-- LAr DM Samplings -->
-<!-- xxxxxxxxxxxxxxxxx -->
-
-
-<!-- 4 sampling region: 0 to 3 -->
-
- <subregion name="DMLArSampling-0" >
- <range field="samplingvalue" value="0" />
- </subregion>
-
- <subregion name="DMLArSampling-1" >
- <range field="samplingvalue" value="1" />
- </subregion>
-
- <subregion name="DMLArSampling-2" >
- <range field="samplingvalue" value="2" />
- </subregion>
-
- <subregion name="DMLArSampling-3" >
- <range field="samplingvalue" value="3" />
- </subregion>
-
-
-<!-- Tile DM Samplings -->
-<!-- xxxxxxxxxxxxxxxxx -->
-
-
-<!-- 4 sampling region: 0 to 3 -->
-
-
- <subregion name="DMTileSampling-0" >
- <range field="samplingvalue" value="0" />
- </subregion>
-
- <subregion name="DMTileSampling-1" >
- <range field="samplingvalue" value="1" />
- </subregion>
-
- <subregion name="DMTileSampling-2" >
- <range field="samplingvalue" value="2" />
- </subregion>
-
- <subregion name="DMTileSampling-3" >
- <range field="samplingvalue" value="3" />
- </subregion>
-
-
-
-<!-- LAr DM regions -->
-<!-- xxxxxxxxxxxxxx -->
-
-<!-- type 1, sampling 0, regions 0 to 5 -->
-
- <region group="DM_Reg" name="DM_4_1_0_0" >
- <reference subregion="DMLArOutside" />
- <reference subregion="DMLArSampling-0" />
- <range field="DMregion" minvalue="0" maxvalue="5" />
- <range field="DMEta" minvalue="0" maxvalue="49" />
- <reference subregion="DMPhi-1" />
- </region>
-
-<!-- type 1, sampling 1, region 0 to 7-->
-
- <region group="DM_Reg" name="DM_4_1_1_0" >
- <reference subregion="DMLArOutside" />
- <reference subregion="DMLArSampling-1" />
- <range field="DMregion" value="0" />
- <range field="DMEta" minvalue="0" maxvalue="14" />
- <reference subregion="DMPhi-1" />
- </region>
-
- <region group="DM_Reg" name="DM_4_1_1_1" >
- <reference subregion="DMLArOutside" />
- <reference subregion="DMLArSampling-1" />
- <range field="DMregion" value="1" />
- <range field="DMEta" minvalue="0" maxvalue="14" />
- <reference subregion="DMPhi-1" />
- </region>
-
- <region group="DM_Reg" name="DM_4_1_1_2" >
- <reference subregion="DMLArOutside" />
- <reference subregion="DMLArSampling-1" />
- <range field="DMregion" value="2" />
- <range field="DMEta" minvalue="0" maxvalue="15" />
- <reference subregion="DMPhi-1" />
- </region>
-
- <region group="DM_Reg" name="DM_4_1_1_3" >
- <reference subregion="DMLArOutside" />
- <reference subregion="DMLArSampling-1" />
- <range field="DMregion" value="3" />
- <range field="DMEta" minvalue="0" maxvalue="15" />
- <reference subregion="DMPhi-1" />
- </region>
-
- <region group="DM_Reg" name="DM_4_1_1_4" >
- <reference subregion="DMLArOutside" />
- <reference subregion="DMLArSampling-1" />
- <range field="DMregion" value="4" />
- <range field="DMEta" value="0" />
- <reference subregion="DMPhi-1" />
- </region>
-
- <region group="DM_Reg" name="DM_4_1_1_5" >
- <reference subregion="DMLArOutside" />
- <reference subregion="DMLArSampling-1" />
- <range field="DMregion" value="5" />
- <range field="DMEta" minvalue="0" maxvalue="2" />
- <reference subregion="DMPhi-1" />
- </region>
-
- <region group="DM_Reg" name="DM_4_1_1_6" >
- <reference subregion="DMLArOutside" />
- <reference subregion="DMLArSampling-1" />
- <range field="DMregion" value="6" />
- <range field="DMEta" minvalue="0" maxvalue="18" />
- <reference subregion="DMPhi-1" />
- </region>
-
- <region group="DM_Reg" name="DM_4_1_1_7" >
- <reference subregion="DMLArOutside" />
- <reference subregion="DMLArSampling-1" />
- <range field="DMregion" value="7" />
- <range field="DMEta" minvalue="0" maxvalue="17" />
- <reference subregion="DMPhi-1" />
- </region>
-
-<!-- type 1, sampling 2, region 0 to 5-->
-
- <region group="DM_Reg" name="DM_4_1_2_0" >
- <reference subregion="DMLArOutside" />
- <reference subregion="DMLArSampling-2" />
- <range field="DMregion" value="0" />
- <range field="DMEta" minvalue="0" maxvalue="9" />
- <reference subregion="DMPhi-1" />
- </region>
-
- <region group="DM_Reg" name="DM_4_1_2_1" >
- <reference subregion="DMLArOutside" />
- <reference subregion="DMLArSampling-2" />
- <range field="DMregion" value="1" />
- <range field="DMEta" minvalue="0" maxvalue="9" />
- <reference subregion="DMPhi-1" />
- </region>
-
- <region group="DM_Reg" name="DM_4_1_2_2" >
- <reference subregion="DMLArOutside" />
- <reference subregion="DMLArSampling-2" />
- <range field="DMregion" value="2" />
- <range field="DMEta" minvalue="0" maxvalue="4" />
- <reference subregion="DMPhi-1" />
- </region>
-
- <region group="DM_Reg" name="DM_4_1_2_3" >
- <reference subregion="DMLArOutside" />
- <reference subregion="DMLArSampling-2" />
- <range field="DMregion" value="3" />
- <range field="DMEta" minvalue="0" maxvalue="17" />
- <reference subregion="DMPhi-1" />
- </region>
-
- <region group="DM_Reg" name="DM_4_1_2_4" >
- <reference subregion="DMLArOutside" />
- <reference subregion="DMLArSampling-2" />
- <range field="DMregion" value="4" />
- <range field="DMEta" minvalue="0" maxvalue="17" />
- <reference subregion="DMPhi-1" />
- </region>
-
- <region group="DM_Reg" name="DM_4_1_2_5" >
- <reference subregion="DMLArOutside" />
- <reference subregion="DMLArSampling-2" />
- <range field="DMregion" value="5" />
- <range field="DMEta" minvalue="0" maxvalue="6" />
- <reference subregion="DMPhi-1" />
- </region>
-
-
-<!-- type 1, sampling 3, region 0 to 2-->
-
- <region group="DM_Reg" name="DM_4_1_3_0" >
- <reference subregion="DMLArOutside" />
- <reference subregion="DMLArSampling-3" />
- <range field="DMregion" value="0" />
- <range field="DMEta" minvalue="0" maxvalue="32" />
- <reference subregion="DMPhi-1" />
- </region>
-
- <region group="DM_Reg" name="DM_4_1_3_1" >
- <reference subregion="DMLArOutside" />
- <reference subregion="DMLArSampling-3" />
- <range field="DMregion" value="1" />
- <range field="DMEta" minvalue="0" maxvalue="14" />
- <reference subregion="DMPhi-1" />
- </region>
-
- <region group="DM_Reg" name="DM_4_1_3_2" >
- <reference subregion="DMLArOutside" />
- <reference subregion="DMLArSampling-3" />
- <range field="DMregion" value="2" />
- <range field="DMEta" value="0" />
- <reference subregion="DMPhi-3" />
- </region>
-
-
-<!-- type 2, sampling [0,3], region 0 to 5-->
-
- <region group="DM_Reg" name="DM_4_2_0_0" >
- <reference subregion="DMLarInside" />
- <reference subregion="DMLArSampling-0" />
- <range field="DMregion" value="0" />
- <range field="DMEta" value="0" />
- <reference subregion="DMPhi-1" />
- </region>
-
- <region group="DM_Reg" name="DM_4_2_0_1" >
- <reference subregion="DMLarInside" />
- <reference subregion="DMLArSampling-0" />
- <range field="DMregion" value="1" />
- <range field="DMEta" value="0" />
- <reference subregion="DMPhi-1" />
- </region>
-
-
- <region group="DM_Reg" name="DM_4_2_0_2" >
- <reference subregion="DMLarInside" />
- <reference subregion="DMLArSampling-0" />
- <range field="DMregion" value="2" />
- <range field="DMEta" minvalue="0" maxvalue="9" />
- <reference subregion="DMPhi-2" />
- </region>
-
- <region group="DM_Reg" name="DM_4_2_0_3" >
- <reference subregion="DMLarInside" />
- <reference subregion="DMLArSampling-0" />
- <range field="DMregion" value="3" />
- <range field="DMEta" minvalue="0" maxvalue="3" />
- <reference subregion="DMPhi-2" />
- </region>
-
- <region group="DM_Reg" name="DM_4_2_0_4" >
- <reference subregion="DMLarInside" />
- <reference subregion="DMLArSampling-0" />
- <range field="DMregion" value="4" />
- <range field="DMEta" value="0" />
- <reference subregion="DMPhi-1" />
- </region>
-
- <region group="DM_Reg" name="DM_4_2_0_5" >
- <reference subregion="DMLarInside" />
- <reference subregion="DMLArSampling-0" />
- <range field="DMregion" value="5" />
- <range field="DMEta" minvalue="0" maxvalue="19" />
- <reference subregion="DMPhi-1" />
- </region>
-
-
- <region group="DM_Reg" name="DM_4_2_1_0" >
- <reference subregion="DMLarInside" />
- <reference subregion="DMLArSampling-1" />
- <range field="DMregion" value="0" />
- <range field="DMEta" value="0" />
- <reference subregion="DMPhi-1" />
- </region>
-
- <region group="DM_Reg" name="DM_4_2_1_1" >
- <reference subregion="DMLarInside" />
- <reference subregion="DMLArSampling-1" />
- <range field="DMregion" value="1" />
- <range field="DMEta" value="0" />
- <reference subregion="DMPhi-1" />
- </region>
-
- <region group="DM_Reg" name="DM_4_2_1_2" >
- <reference subregion="DMLarInside" />
- <reference subregion="DMLArSampling-1" />
- <range field="DMregion" value="2" />
- <range field="DMEta" minvalue="0" maxvalue="9" />
- <reference subregion="DMPhi-2" />
- </region>
-
- <region group="DM_Reg" name="DM_4_2_1_3" >
- <reference subregion="DMLarInside" />
- <reference subregion="DMLArSampling-1" />
- <range field="DMregion" value="3" />
- <range field="DMEta" minvalue="0" maxvalue="3" />
- <reference subregion="DMPhi-2" />
- </region>
-
- <region group="DM_Reg" name="DM_4_2_1_4" >
- <reference subregion="DMLarInside" />
- <reference subregion="DMLArSampling-1" />
- <range field="DMregion" value="4" />
- <range field="DMEta" value="0" />
- <reference subregion="DMPhi-1" />
- </region>
-
- <region group="DM_Reg" name="DM_4_2_1_5" >
- <reference subregion="DMLarInside" />
- <reference subregion="DMLArSampling-1" />
- <range field="DMregion" value="5" />
- <range field="DMEta" minvalue="0" maxvalue="19" />
- <reference subregion="DMPhi-1" />
- </region>
-
-
- <region group="DM_Reg" name="DM_4_2_2_0" >
- <reference subregion="DMLarInside" />
- <reference subregion="DMLArSampling-2" />
- <range field="DMregion" value="0" />
- <range field="DMEta" value="0" />
- <reference subregion="DMPhi-1" />
- </region>
-
- <region group="DM_Reg" name="DM_4_2_2_1" >
- <reference subregion="DMLarInside" />
- <reference subregion="DMLArSampling-2" />
- <range field="DMregion" value="1" />
- <range field="DMEta" value="0" />
- <reference subregion="DMPhi-1" />
- </region>
-
- <region group="DM_Reg" name="DM_4_2_2_2" >
- <reference subregion="DMLarInside" />
- <reference subregion="DMLArSampling-2" />
- <range field="DMregion" value="2" />
- <range field="DMEta" minvalue="0" maxvalue="9" />
- <reference subregion="DMPhi-2" />
- </region>
-
- <region group="DM_Reg" name="DM_4_2_2_3" >
- <reference subregion="DMLarInside" />
- <reference subregion="DMLArSampling-2" />
- <range field="DMregion" value="3" />
- <range field="DMEta" minvalue="0" maxvalue="3" />
- <reference subregion="DMPhi-2" />
- </region>
-
- <region group="DM_Reg" name="DM_4_2_2_4" >
- <reference subregion="DMLarInside" />
- <reference subregion="DMLArSampling-2" />
- <range field="DMregion" value="4" />
- <range field="DMEta" value="0" />
- <reference subregion="DMPhi-1" />
- </region>
-
- <region group="DM_Reg" name="DM_4_2_2_5" >
- <reference subregion="DMLarInside" />
- <reference subregion="DMLArSampling-2" />
- <range field="DMregion" value="5" />
- <range field="DMEta" minvalue="0" maxvalue="19" />
- <reference subregion="DMPhi-1" />
- </region>
-
-
- <region group="DM_Reg" name="DM_4_2_3_0" >
- <reference subregion="DMLarInside" />
- <reference subregion="DMLArSampling-3" />
- <range field="DMregion" value="0" />
- <range field="DMEta" value="0" />
- <reference subregion="DMPhi-1" />
- </region>
-
- <region group="DM_Reg" name="DM_4_2_3_1" >
- <reference subregion="DMLarInside" />
- <reference subregion="DMLArSampling-3" />
- <range field="DMregion" value="1" />
- <range field="DMEta" value="0" />
- <reference subregion="DMPhi-1" />
- </region>
-
- <region group="DM_Reg" name="DM_4_2_3_2" >
- <reference subregion="DMLarInside" />
- <reference subregion="DMLArSampling-3" />
- <range field="DMregion" value="2" />
- <range field="DMEta" minvalue="0" maxvalue="9" />
- <reference subregion="DMPhi-2" />
- </region>
-
- <region group="DM_Reg" name="DM_4_2_3_3" >
- <reference subregion="DMLarInside" />
- <reference subregion="DMLArSampling-3" />
- <range field="DMregion" value="3" />
- <range field="DMEta" minvalue="0" maxvalue="3" />
- <reference subregion="DMPhi-2" />
- </region>
-
- <region group="DM_Reg" name="DM_4_2_3_4" >
- <reference subregion="DMLarInside" />
- <reference subregion="DMLArSampling-3" />
- <range field="DMregion" value="4" />
- <range field="DMEta" value="0" />
- <reference subregion="DMPhi-1" />
- </region>
-
- <region group="DM_Reg" name="DM_4_2_3_5" >
- <reference subregion="DMLarInside" />
- <reference subregion="DMLArSampling-3" />
- <range field="DMregion" value="5" />
- <range field="DMEta" minvalue="0" maxvalue="19" />
- <reference subregion="DMPhi-1" />
- </region>
-
-
-<!-- TILE DM regions -->
-<!-- xxxxxxxxxxxxxxx -->
-
-<!-- type 1, sampling 0, region 0 to 1 -->
-
- <region group="DM_Reg" name="DM_5_1_0_0" >
- <reference subregion="DMTileOutside" />
- <reference subregion="DMTileSampling-0" />
- <range field="DMregion" value="0" />
- <range field="DMEta" minvalue="0" maxvalue="9" />
- <reference subregion="DMPhi-1" />
- </region>
-
- <region group="DM_Reg" name="DM_5_1_0_1" >
- <reference subregion="DMTileOutside" />
- <reference subregion="DMTileSampling-0" />
- <range field="DMregion" value="1" />
- <range field="DMEta" minvalue="0" maxvalue="4" />
- <reference subregion="DMPhi-1" />
- </region>
-
-<!-- type 1, sampling 1, region 0 to 2 -->
-
- <region group="DM_Reg" name="DM_5_1_1_0" >
- <reference subregion="DMTileOutside" />
- <reference subregion="DMTileSampling-1" />
- <range field="DMregion" value="0" />
- <range field="DMEta" minvalue="0" maxvalue="3" />
- <reference subregion="DMPhi-1" />
- </region>
-
- <region group="DM_Reg" name="DM_5_1_1_1" >
- <reference subregion="DMTileOutside" />
- <reference subregion="DMTileSampling-1" />
- <range field="DMregion" value="1" />
- <range field="DMEta" minvalue="0" maxvalue="2" />
- <reference subregion="DMPhi-1" />
- </region>
-
- <region group="DM_Reg" name="DM_5_1_1_2" >
- <reference subregion="DMTileOutside" />
- <reference subregion="DMTileSampling-1" />
- <range field="DMregion" value="2" />
- <range field="DMEta" minvalue="0" maxvalue="3" />
- <reference subregion="DMPhi-1" />
- </region>
-
-
-<!-- type 1, sampling 2, region 0 to 2 -->
-
- <region group="DM_Reg" name="DM_5_1_2_0" >
- <reference subregion="DMTileOutside" />
- <reference subregion="DMTileSampling-2" />
- <range field="DMregion" value="0" />
- <range field="DMEta" minvalue="0" maxvalue="7" />
- <reference subregion="DMPhi-1" />
- </region>
-
- <region group="DM_Reg" name="DM_5_1_2_1" >
- <reference subregion="DMTileOutside" />
- <reference subregion="DMTileSampling-2" />
- <range field="DMregion" value="1" />
- <range field="DMEta" minvalue="0" maxvalue="4" />
- <reference subregion="DMPhi-1" />
- </region>
-
- <region group="DM_Reg" name="DM_5_1_2_2" >
- <reference subregion="DMTileOutside" />
- <reference subregion="DMTileSampling-2" />
- <range field="DMregion" value="2" />
- <range field="DMEta" minvalue="0" maxvalue="1" />
- <reference subregion="DMPhi-1" />
- </region>
-
-<!-- type 1, sampling 3, region 0 -->
-
- <region group="DM_Reg" name="DM_5_1_3_0" >
- <reference subregion="DMTileOutside" />
- <reference subregion="DMTileSampling-3" />
- <range field="DMregion" value="0" />
- <range field="DMEta" minvalue="0" maxvalue="16" />
- <reference subregion="DMPhi-1" />
- </region>
-
-<!-- type 2, sampling 0, region 0 -->
-
- <region group="DM_Reg" name="DM_5_2_0_0" >
- <reference subregion="DMTileDefHits" />
- <reference subregion="DMTileSampling-0" />
- <range field="DMregion" value="0" />
- <range field="DMEta" value="0" />
- <reference subregion="DMPhi-3" />
- </region>
-
-
-<!-- LVL1 part -->
-<!-- xxxxxxxxxxxxxxxxx -->
-
- <field name="LVL1sampling" >
- <label name="EM" value="0" />
- <label name="Hadronic" value="1" />
- </field>
-
- <subregion name="LVL1" >
- <range field="DetZside" values="negative_lvl1_side positive_lvl1_side" />
- <range field="LVL1sampling" values="EM Hadronic" />
- </subregion>
-
-
- <region group="Reg_Lvl1" name="Lvl1_0" >
- <reference subregion="LVL1" />
- <range field="region" value="0" />
- <range field="eta" minvalue="0" maxvalue="24" />
- <range field="phi" minvalue="0" maxvalue="63" wraparound="TRUE" />
- <range field="layer" minvalue="0" maxvalue="3" />
- </region>
-
- <region group="Reg_Lvl1" name="Lvl1_1" >
- <reference subregion="LVL1" />
- <range field="region" value="1" />
- <range field="eta" minvalue="0" maxvalue="2" />
- <range field="phi" minvalue="0" maxvalue="31" wraparound="TRUE" />
- <range field="layer" minvalue="0" maxvalue="3" />
- </region>
-
- <region group="Reg_Lvl1" name="Lvl1_2" >
- <reference subregion="LVL1" />
- <range field="region" value="2" />
- <range field="eta" value="0" />
- <range field="phi" minvalue="0" maxvalue="31" wraparound="TRUE" />
- <range field="layer" minvalue="0" maxvalue="3" />
- </region>
-
-
- <region group="Reg_Lvl1" name="Lvl1_3" >
- <reference subregion="LVL1" />
- <range field="region" value="3" />
- <range field="eta" minvalue="0" maxvalue="3"/>
- <range field="phi" minvalue="0" maxvalue="15" wraparound="TRUE" />
- <range field="layer" minvalue="0" maxvalue="1" />
- </region>
-
-
-
-<!-- xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx -->
-<!-- Online L1 Trigger Tower regions -->
-<!-- xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx -->
-
-
-<!-- Fields used to describe a TTower -->
-
- <field name="barrel_endcap_fcal" >
- <label name="barrel" value="0" />
- <label name="endcap" value="1" />
- <label name="fcal" value="2" />
- </field>
-
- <field name="em_had" >
- <label name="em" value="0" />
- <label name="had" value="1" />
- </field>
-
-
-<!-- Subregion definition -->
-
- <subregion name="OnlineL1-barrel" >
- <range field="DetZside" values="negative_eta_side positive_eta_side" />
- <range field="barrel_endcap_fcal" value="barrel" />
- </subregion>
-
- <subregion name="OnlineL1-endcap" >
- <range field="DetZside" values="negative_eta_side positive_eta_side" />
- <range field="barrel_endcap_fcal" value="endcap" />
- </subregion>
-
- <subregion name="OnlineL1-fcal" >
- <range field="DetZside" values="negative_eta_side positive_eta_side" />
- <range field="barrel_endcap_fcal" value="fcal" />
- </subregion>
-
-
-<!-- Online L1 EM-Barrel -->
-<!-- xxxxxxxxxxxxxxxxxxxx -->
-
-<region group="Online_L1" name="l1_barrel" >
- <reference subregion="OnlineL1-barrel" />
- <range field="em_had" value="em" />
- <range field="tower_eta" minvalue="1" maxvalue="15" />
- <range field="tower_phi" minvalue="1" maxvalue="64" />
- <range field="tower_layer" minvalue="0" maxvalue="3" />
- </region>
-
-
-<!-- Online L1 EM Endcap -->
-<!-- xxxxxxxxxxxxxxxxxxxx -->
-
-<region group="Online_L1" name="l1_emec_region1" >
- <reference subregion="OnlineL1-endcap" />
- <range field="em_had" value="em" />
- <range field="tower_eta" minvalue="1" maxvalue="11" />
- <range field="tower_phi" minvalue="1" maxvalue="64" />
- <range field="tower_layer" minvalue="0" maxvalue="3" />
-</region>
-
-<region group="Online_L1" name="l1_emec_region2" >
- <reference subregion="OnlineL1-endcap" />
- <range field="em_had" value="em" />
- <range field="tower_eta" minvalue="12" maxvalue="15" />
- <range field="tower_phi" minvalue="1" maxvalue="32" />
- <range field="tower_layer" minvalue="0" maxvalue="3" />
-</region>
-
-<!-- Online L1 HEC Endcap -->
-<!-- xxxxxxxxxxxxxxxxxxxxx -->
-
-<region group="Online_L1" name="l1_hec_region1" >
- <reference subregion="OnlineL1-endcap" />
- <range field="em_had" value="had" />
- <range field="tower_eta" minvalue="2" maxvalue="11" />
- <range field="tower_phi" minvalue="1" maxvalue="64" />
- <range field="tower_layer" minvalue="0" maxvalue="3" />
-</region>
-
-<region group="Online_L1" name="l1_hec_region2" >
- <reference subregion="OnlineL1-endcap" />
- <range field="em_had" value="had" />
- <range field="tower_eta" minvalue="12" maxvalue="15" />
- <range field="tower_phi" minvalue="1" maxvalue="32" />
- <range field="tower_layer" minvalue="0" maxvalue="3" />
-</region>
-
-
-<!-- Online L1 FCAL -->
-<!-- xxxxxxxxxxxxxxx -->
-
-<region group="Online_L1" name="l1_fcal_em" >
- <reference subregion="OnlineL1-fcal" />
- <range field="em_had" value="em" />
- <range field="tower_eta" minvalue="1" maxvalue="4" />
- <range field="tower_phi" minvalue="1" maxvalue="16" />
- <range field="tower_layer" value="0" />
-</region>
-
-<region group="Online_L1" name="l1_fcal_had" >
- <reference subregion="OnlineL1-fcal" />
- <range field="em_had" value="had" />
- <range field="tower_eta" minvalue="1" maxvalue="4" />
- <range field="tower_phi" minvalue="1" maxvalue="16" />
- <range field="tower_layer" minvalue="0" maxvalue="1" />
-</region>
-
-
-</IdDictionary>
diff --git a/graphics/AtlantisJava/geometry/IdDictForwardDetectors.xml b/graphics/AtlantisJava/geometry/IdDictForwardDetectors.xml
deleted file mode 100644
index 588eb81db1c..00000000000
--- a/graphics/AtlantisJava/geometry/IdDictForwardDetectors.xml
+++ /dev/null
@@ -1,140 +0,0 @@
-
-
-<!--
-
- The ForwardDetectors identifier is arranged as follows
-
- ForwardDetectors
- part=BCM
- <to be defined>
-
- part=BCM_Online
- <to be defined>
-
- part=LUCID
- <to be defined>
-
- part=LUCID_Online
- <to be defined>
-
- part=ZDC
- side module type channel
-
- part=ZDC_Online
- side module type channel gain delay
-
- -->
-
-<IdDictionary name="ForwardDetectors" >
-
- <!--
- Start by defining some symbolic labels used for some fields
- (other fields will be specified by numeric ranges)
- -->
-
- <field name="part" >
- <label name="ALFA" value="1" />
- <label name="ALFA_Online" value="2" />
- <label name="BCM" value="3" />
- <label name="BCM_Online" value="4" />
- <label name="LUCID" value="5" />
- <label name="LUCID_Online" value="6" />
- <label name="ZDC" value="7" />
- <label name="ZDC_Online" value="8" />
- <label name="Extra" value="9" />
- <label name="Extra_Online" value="10" />
- </field>
-
- <field name="side">
- <label name="negative" value="-1" />
- <label name="positive" value="+1" />
- </field>
-
-
- <!--
-
- ALFA - to do
-
- -->
-
- <region group="ALFA" name = "alfa">
- <range field="part" value="ALFA" />
- </region>
-
- <region group="ALFA_Online" name = "alfa">
- <range field="part" value="ALFA_Online" />
- </region>
-
- <!--
-
- BCM - to do
-
- -->
-
- <region group="BCM" name = "bcm">
- <range field="part" value="BCM" />
- </region>
-
- <region group="BCM_Online" name = "bcm">
- <range field="part" value="BCM_Online" />
- </region>
-
- <!--
-
- LUCID - to do
-
- -->
-
- <region group="LUCID" name = "lucid">
- <range field="part" value="LUCID" />
- </region>
-
- <region group="LUCID_Online" name = "lucid">
- <range field="part" value="LUCID_Online" />
- </region>
-
- <!--
-
- ZDC
-
- -->
-
- <!-- ZDC - offline -->
-
- <region group="ZDC" name = "zdc">
- <range field="part" value="ZDC" />
- <range field="side" values="negative positive"/>
- <range field="module" minvalue="0" maxvalue="3"/>
- <range field="type" minvalue="0" maxvalue="1" />
- <range field="channel" minvalue="0" maxvalue="63" />
- </region>
-
- <!-- ZDC - online -->
-
- <region group="ZDC_Online" name = "zdc_online">
- <range field="part" value="ZDC_Online" />
- <range field="side" values="negative positive"/>
- <range field="module" minvalue="0" maxvalue="3"/>
- <range field="type" minvalue="0" maxvalue="1" />
- <range field="channel" minvalue="0" maxvalue="63" />
- <range field="gain" minvalue="0" maxvalue="1" />
- <range field="delay" minvalue="0" maxvalue="1" />
- </region>
-
- <!--
-
- EXTRA - to do
-
- -->
-
- <region group="EXTRA" name = "extra">
- <range field="part" value="Extra" />
- </region>
-
- <region group="EXTRA_Online" name = "extra">
- <range field="part" value="Extra_Online" />
- </region>
-
-
-</IdDictionary>
-
diff --git a/graphics/AtlantisJava/geometry/IdDictInnerDetector.xml b/graphics/AtlantisJava/geometry/IdDictInnerDetector.xml
deleted file mode 100755
index 98c405c193a..00000000000
--- a/graphics/AtlantisJava/geometry/IdDictInnerDetector.xml
+++ /dev/null
@@ -1,559 +0,0 @@
-
-
-<!--
-
- The InnerDetector identifier is arranged as follows
-
- InnerDetector
- part=Pixel
- side=barrel
- layer phi_module eta_module phi_index eta_index
- side=endcap
- disk phi_module eta_module phi_index eta_index
-
- part=SCT
- side=barrel
- layer phi_module eta_module side strip
- side=endcap
- disk phi_module eta_module side strip
-
- part=TRT
- side=barrel
- layer phi_module straw_layer straw
- side=endcap
- wheel phi_module straw_layer straw
-
-
- -->
-
-<IdDictionary name="InnerDetector" >
-
- <!--
- Start by defining some symbolic labels used for some fields
- (other fields will be specified by numeric ranges)
- -->
-
- <field name="part" >
- <label name="Pixel" value="1" />
- <label name="SCT" value="2" />
- <label name="TRT" value="3" />
- </field>
-
- <field name="barrel_endcap">
- <label name="negative_endcap" value="-2" />
- <label name="negative_barrel" value="-1" />
- <label name="barrel" value="0" />
- <label name="positive_barrel" value="+1" />
- <label name="positive_endcap" value="+2" />
- </field>
-
-
-
- <!--
-
- Pixel
-
- -->
-
- <!-- Dummy region: This forces the bit packing to be the same for all layouts -->
-
- <region group="pixel" name = "dummy">
- <range field="part" value="Pixel" />
- <range field="barrel_endcap" values="negative_endcap barrel positive_endcap"/>
- <range field="layer" minvalue="0" maxvalue="2"/>
- <range field="phi_module" minvalue="0" maxvalue="51" />
- <range field="eta_module" minvalue="-6" maxvalue="+6" />
- <range field="phi_index" minvalue="0" maxvalue="327" />
- <range field="eta_index" minvalue="0" maxvalue="191" />
- </region>
-
-
- <!--
- Define few subregions which are re-used in several id-ranges.
- -->
-
- <subregion name="pixel_barrel">
- <range field="part" value="Pixel" />
- <range field="barrel_endcap" value="barrel" />
- </subregion>
-
- <subregion name="pixel_endcap">
- <range field="part" value="Pixel" />
- <range field="barrel_endcap" values="negative_endcap positive_endcap" />
- </subregion>
-
- <subregion name="pixel_default_eta_module">
- <range field="phi_index" minvalue="0" maxvalue="327" />
- <range field="eta_index" minvalue="0" maxvalue="143" />
- </subregion>
-
- <subregion name="pixel_phi_barrel_module">
- <range field="eta_module" minvalue="-6" maxvalue="+6" />
- <reference subregion="pixel_default_eta_module" />
- </subregion>
-
- <subregion name="pixel_phi_endcap_module">
- <range field="eta_module" value="0" />
- <reference subregion="pixel_default_eta_module" />
- </subregion>
-
- <!--
- Then enumerate all the possible regions of the Pixel subdetector.
- Each region corresponds to an identifier range.
- -->
-
- <!--
- The follow region is the pixel b-layer. Normally, the correct
- phi_index max should be 319, but we set it to 327 as for the other
- layers to allow to calculate the pixel_id from SiDigit, i.e. using
- the G3 numbering which is not completely correct. This should be a
- temporary fix. Correct specif:
- <range field="phi_index" minvalue="0" maxvalue="319" />
- -->
- <alternate_regions>
- <region group="pixel" >
- <reference subregion="pixel_barrel" />
- <range field="layer" value="0" />
- <range field="phi_module" minvalue="0" maxvalue="21" wraparound="TRUE" />
- <range field="eta_module" minvalue="-6" maxvalue="+6" />
- <range field="phi_index" minvalue="0" maxvalue="327" />
- <range field="eta_index" minvalue="0" maxvalue="191" />
- </region>
- <region group="pixel" tag="initial_layout" >
- <reference subregion="pixel_barrel" />
- <range field="layer" value="0" />
- <range field="phi_module" minvalue="0" maxvalue="21" wraparound="TRUE" />
- <reference subregion="pixel_phi_barrel_module" />
- </region>
- <region group="pixel" tag="final_layout" >
- <reference subregion="pixel_barrel" />
- <range field="layer" value="0" />
- <range field="phi_module" minvalue="0" maxvalue="21" wraparound="TRUE" />
- <reference subregion="pixel_phi_barrel_module" />
- </region>
- <region group="pixel" tag="destaged_layout" >
- <reference subregion="pixel_barrel" />
- <range field="layer" value="0" />
- <range field="phi_module" minvalue="0" maxvalue="21" wraparound="TRUE" />
- <reference subregion="pixel_phi_barrel_module" />
- </region>
- </alternate_regions>
-
- <alternate_regions>
- <region group="pixel" >
- <reference subregion="pixel_barrel" />
- <range field="layer" value="1" />
- <range field="phi_module" minvalue="0" maxvalue="37" wraparound="TRUE" />
- <reference subregion="pixel_phi_barrel_module" />
- </region>
- <region group="pixel" tag="initial_layout" />
- <region group="pixel" tag="final_layout" >
- <reference subregion="pixel_barrel" />
- <range field="layer" value="1" />
- <range field="phi_module" minvalue="0" maxvalue="37" wraparound="TRUE" />
- <reference subregion="pixel_phi_barrel_module" />
- </region>
- <region group="pixel" tag="destaged_layout" >
- <reference subregion="pixel_barrel" />
- <range field="layer" value="1" />
- <range field="phi_module" minvalue="0" maxvalue="37" wraparound="TRUE" />
- <reference subregion="pixel_phi_barrel_module" />
- </region>
- </alternate_regions>
-
- <region group="pixel" >
- <reference subregion="pixel_barrel" />
- <range field="layer" value="2" />
- <range field="phi_module" minvalue="0" maxvalue="51" wraparound="TRUE" />
- <reference subregion="pixel_phi_barrel_module" />
- </region>
-
- <alternate_regions>
- <region group="pixel" >
- <reference subregion="pixel_endcap" />
- <range field="disk" minvalue="0" maxvalue="2" />
- <range field="phi_module" minvalue="0" maxvalue="47" wraparound="TRUE" />
- <reference subregion="pixel_phi_endcap_module" />
- </region>
- <region group="pixel" tag="initial_layout" >
- <reference subregion="pixel_endcap" />
- <range field="disk" values="0 2" />
- <range field="phi_module" minvalue="0" maxvalue="47" wraparound="TRUE" />
- <reference subregion="pixel_phi_endcap_module" />
- </region>
- <region group="pixel" tag="final_layout" >
- <reference subregion="pixel_endcap" />
- <range field="disk" minvalue="0" maxvalue="2" />
- <range field="phi_module" minvalue="0" maxvalue="47" wraparound="TRUE" />
- <reference subregion="pixel_phi_endcap_module" />
- </region>
- <region group="pixel" tag="destaged_layout" >
- <reference subregion="pixel_endcap" />
- <range field="disk" minvalue="0" maxvalue="2" />
- <range field="phi_module" minvalue="0" maxvalue="47" wraparound="TRUE" />
- <reference subregion="pixel_phi_endcap_module" />
- </region>
- </alternate_regions>
-
-
-
- <!--
-
- SCT
-
- -->
-
-
- <subregion name="SCT_barrel">
- <range field="part" value="SCT" />
- <range field="barrel_endcap" value="barrel" />
- </subregion>
-
- <subregion name="SCT_endcap">
- <range field="part" value="SCT" />
- <range field="barrel_endcap" values="negative_endcap positive_endcap" />
- </subregion>
-
- <subregion name="SCT_eta_module">
- <range field="side" minvalue="0" maxvalue="1" />
- <range field="strip" minvalue="0" maxvalue="767" />
- </subregion>
-
-
-
-
- <subregion name="SCT_phi_negative_barrel_module">
- <range field="eta_module" minvalue="-6" maxvalue="-1" next_value="1" />
- <reference subregion="SCT_eta_module" />
- </subregion>
-
- <region group="sct" >
- <reference subregion="SCT_barrel" />
- <range field="layer" value="0" />
- <range field="phi_module" minvalue="0" maxvalue="31" wraparound="TRUE" />
- <reference subregion="SCT_phi_negative_barrel_module" />
- </region>
-
- <region group="sct" >
- <reference subregion="SCT_barrel" />
- <range field="layer" value="1" />
- <range field="phi_module" minvalue="0" maxvalue="39" wraparound="TRUE" />
- <reference subregion="SCT_phi_negative_barrel_module" />
- </region>
-
- <region group="sct" >
- <reference subregion="SCT_barrel" />
- <range field="layer" value="2" />
- <range field="phi_module" minvalue="0" maxvalue="47" wraparound="TRUE" />
- <reference subregion="SCT_phi_negative_barrel_module" />
- </region>
-
- <region group="sct" >
- <reference subregion="SCT_barrel" />
- <range field="layer" value="3" />
- <range field="phi_module" minvalue="0" maxvalue="55" wraparound="TRUE"/>
- <reference subregion="SCT_phi_negative_barrel_module" />
- </region>
-
-
-
-
-
- <subregion name="SCT_phi_positive_barrel_module">
- <range field="eta_module" minvalue="+1" maxvalue="+6" prev_value="-1" />
- <reference subregion="SCT_eta_module" />
- </subregion>
-
- <region group="sct" >
- <reference subregion="SCT_barrel" />
- <range field="layer" value="0" />
- <range field="phi_module" minvalue="0" maxvalue="31" wraparound="TRUE" />
- <reference subregion="SCT_phi_positive_barrel_module" />
- </region>
-
- <region group="sct" >
- <reference subregion="SCT_barrel" />
- <range field="layer" value="1" />
- <range field="phi_module" minvalue="0" maxvalue="39" wraparound="TRUE" />
- <reference subregion="SCT_phi_positive_barrel_module" />
- </region>
-
- <region group="sct" >
- <reference subregion="SCT_barrel" />
- <range field="layer" value="2" />
- <range field="phi_module" minvalue="0" maxvalue="47" wraparound="TRUE" />
- <reference subregion="SCT_phi_positive_barrel_module" />
- </region>
-
- <region group="sct" >
- <reference subregion="SCT_barrel" />
- <range field="layer" value="3" />
- <range field="phi_module" minvalue="0" maxvalue="55" wraparound="TRUE" />
- <reference subregion="SCT_phi_positive_barrel_module" />
- </region>
-
- <subregion name="SCT_ring_0">
- <range field="phi_module" minvalue="0" maxvalue="51" wraparound="TRUE" />
- <range field="eta_module" value="0" />
- <reference subregion="SCT_eta_module" />
- </subregion>
-
- <subregion name="SCT_ring_1">
- <range field="phi_module" minvalue="0" maxvalue="39" wraparound="TRUE" />
- <range field="eta_module" value="1" />
- <reference subregion="SCT_eta_module" />
- </subregion>
-
- <subregion name="SCT_ring_1_2">
- <range field="phi_module" minvalue="0" maxvalue="39" wraparound="TRUE" />
- <range field="eta_module" minvalue="1" maxvalue="2" />
- <reference subregion="SCT_eta_module" />
- </subregion>
-
- <region group="sct" name="SCT_endcap_ring0_disks08">
- <reference subregion="SCT_endcap" />
- <range field="disk" minvalue="0" maxvalue="8" />
- <reference subregion="SCT_ring_0" />
- </region>
-
-
- <region group="sct" name="SCT_endcap_ring1_disk0">
- <reference subregion="SCT_endcap" />
- <range field="disk" value="0" />
- <reference subregion="SCT_ring_1" />
- </region>
-
- <region group="sct" name="SCT_endcap_rings12_disks15">
- <reference subregion="SCT_endcap" />
- <range field="disk" minvalue="1" maxvalue="5" />
- <reference subregion="SCT_ring_1_2" />
- </region>
-
- <region group="sct" name="SCT_endcap_ring1_disks67">
- <reference subregion="SCT_endcap" />
- <range field="disk" minvalue="6" maxvalue="7" />
- <reference subregion="SCT_ring_1" />
- </region>
-
- <!--
-
- TRT
-
- -->
-
- <subregion name="TRT_barrel">
- <range field="part" value="TRT" />
- <range field="barrel_endcap" values="negative_barrel positive_barrel" />
- </subregion>
-
- <subregion name="TRT_endcap">
- <range field="part" value="TRT" />
- <range field="barrel_endcap" values="negative_endcap positive_endcap" />
- </subregion>
-
-
-
- <subregion name="TRT_layer_0">
- <reference subregion="TRT_barrel" />
- <range field="phi_sector" minvalue="0" maxvalue="31" wraparound="TRUE" />
- <range field="layer_or_wheel" value="0" />
- </subregion>
-
- <region group="trt" >
- <reference subregion="TRT_layer_0" />
- <range field="straw_layer" value="0" />
- <range field="straw" minvalue="0" maxvalue="14" />
- </region>
-
- <region group="trt" >
- <reference subregion="TRT_layer_0" />
- <range field="straw_layer" minvalue="1" maxvalue="4" />
- <range field="straw" minvalue="0" maxvalue="15" />
- </region>
-
- <region group="trt" >
- <reference subregion="TRT_layer_0" />
- <range field="straw_layer" minvalue="5" maxvalue="9" />
- <range field="straw" minvalue="0" maxvalue="16" />
- </region>
-
- <region group="trt" >
- <reference subregion="TRT_layer_0" />
- <range field="straw_layer" minvalue="10" maxvalue="14" />
- <range field="straw" minvalue="0" maxvalue="17" />
- </region>
-
- <region group="trt" >
- <reference subregion="TRT_layer_0" />
- <range field="straw_layer" minvalue="15" maxvalue="17" />
- <range field="straw" minvalue="0" maxvalue="18" />
- </region>
-
- <region group="trt" >
- <reference subregion="TRT_layer_0" />
- <range field="straw_layer" value="18" />
- <range field="straw" minvalue="0" maxvalue="17" />
- </region>
-
-
-
-
-
- <subregion name="TRT_layer_1">
- <reference subregion="TRT_barrel" />
- <range field="phi_sector" minvalue="0" maxvalue="31" wraparound="TRUE" />
- <range field="layer_or_wheel" value="1" />
- </subregion>
-
- <region group="trt" >
- <reference subregion="TRT_layer_1" />
- <range field="straw_layer" value="0" />
- <range field="straw" minvalue="0" maxvalue="18" />
- </region>
-
- <region group="trt" >
- <reference subregion="TRT_layer_1" />
- <range field="straw_layer" minvalue="1" maxvalue="5" />
- <range field="straw" minvalue="0" maxvalue="19" />
- </region>
-
- <region group="trt" >
- <reference subregion="TRT_layer_1" />
- <range field="straw_layer" minvalue="6" maxvalue="10" />
- <range field="straw" minvalue="0" maxvalue="20" />
- </region>
-
- <region group="trt" >
- <reference subregion="TRT_layer_1" />
- <range field="straw_layer" minvalue="11" maxvalue="15" />
- <range field="straw" minvalue="0" maxvalue="21" />
- </region>
-
- <region group="trt" >
- <reference subregion="TRT_layer_1" />
- <range field="straw_layer" minvalue="16" maxvalue="20" />
- <range field="straw" minvalue="0" maxvalue="22" />
- </region>
-
- <region group="trt" >
- <reference subregion="TRT_layer_1" />
- <range field="straw_layer" minvalue="21" maxvalue="22" />
- <range field="straw" minvalue="0" maxvalue="23" />
- </region>
-
- <region group="trt" >
- <reference subregion="TRT_layer_1" />
- <range field="straw_layer" value="23" />
- <range field="straw" minvalue="0" maxvalue="22" />
- </region>
-
-
-
-
-
- <subregion name="TRT_layer_2">
- <reference subregion="TRT_barrel" />
- <range field="phi_sector" minvalue="0" maxvalue="31" wraparound="TRUE" />
- <range field="layer_or_wheel" value="2" />
- </subregion>
-
- <region group="trt" >
- <reference subregion="TRT_layer_2" />
- <range field="straw_layer" value="0" />
- <range field="straw" minvalue="0" maxvalue="22" />
- </region>
-
- <region group="trt" >
- <reference subregion="TRT_layer_2" />
- <range field="straw_layer" minvalue="1" maxvalue="4" />
- <range field="straw" minvalue="0" maxvalue="23" />
- </region>
-
- <region group="trt" >
- <reference subregion="TRT_layer_2" />
- <range field="straw_layer" minvalue="5" maxvalue="9" />
- <range field="straw" minvalue="0" maxvalue="24" />
- </region>
-
- <region group="trt" >
- <reference subregion="TRT_layer_2" />
- <range field="straw_layer" minvalue="10" maxvalue="14" />
- <range field="straw" minvalue="0" maxvalue="25" />
- </region>
-
- <region group="trt" >
- <reference subregion="TRT_layer_2" />
- <range field="straw_layer" minvalue="15" maxvalue="19" />
- <range field="straw" minvalue="0" maxvalue="26" />
- </region>
-
- <region group="trt" >
- <reference subregion="TRT_layer_2" />
- <range field="straw_layer" minvalue="20" maxvalue="24" />
- <range field="straw" minvalue="0" maxvalue="27" />
- </region>
-
- <region group="trt" >
- <reference subregion="TRT_layer_2" />
- <range field="straw_layer" minvalue="25" maxvalue="28" />
- <range field="straw" minvalue="0" maxvalue="28" />
- </region>
-
- <region group="trt" >
- <reference subregion="TRT_layer_2" />
- <range field="straw_layer" value="29" />
- <range field="straw" minvalue="0" maxvalue="27" />
- </region>
-
-
-
-
- <region group="trt" >
- <reference subregion="TRT_endcap" />
- <range field="phi_sector" minvalue="0" maxvalue="31" wraparound="TRUE" />
- <range field="layer_or_wheel" minvalue="0" maxvalue="5" />
- <range field="straw_layer" minvalue="0" maxvalue="15" />
- <range field="straw" minvalue="0" maxvalue="23" />
- </region>
-
- <region group="trt" >
- <reference subregion="TRT_endcap" />
- <range field="phi_sector" minvalue="0" maxvalue="31" wraparound="TRUE" />
- <range field="layer_or_wheel" minvalue="6" maxvalue="13" />
- <range field="straw_layer" minvalue="0" maxvalue="7" />
- <range field="straw" minvalue="0" maxvalue="23" />
- </region>
-
- <alternate_regions>
- <region group="trt" >
- <reference subregion="TRT_endcap" />
- <range field="phi_sector" minvalue="0" maxvalue="31" wraparound="TRUE" />
- <range field="layer_or_wheel" minvalue="14" maxvalue="17" />
- <range field="straw_layer" minvalue="0" maxvalue="15" />
- <range field="straw" minvalue="0" maxvalue="17" />
- </region>
- <region group="trt" tag="initial_layout" />
- <region group="trt" tag="final_layout" >
- <reference subregion="TRT_endcap" />
- <range field="phi_sector" minvalue="0" maxvalue="31" wraparound="TRUE" />
- <range field="layer_or_wheel" minvalue="14" maxvalue="17" />
- <range field="straw_layer" minvalue="0" maxvalue="15" />
- <range field="straw" minvalue="0" maxvalue="17" />
- </region>
- <region group="trt" tag="destaged_layout" />
- </alternate_regions>
-
- <!-- Dummy region: This forces the bit packing to be the same for all layouts -->
-
- <region group="trt" name = "dummy">
- <range field="part" value="TRT" />
- <range field="barrel_endcap" values="negative_endcap negative_barrel positive_barrel positive_endcap"/>
- <range field="phi_sector" minvalue="0" maxvalue="31" />
- <range field="layer_or_wheel" minvalue="0" maxvalue="17" />
- <range field="straw_layer" minvalue="0" maxvalue="29" />
- <range field="straw" minvalue="0" maxvalue="28" />
- </region>
-
-
-</IdDictionary>
-
diff --git a/graphics/AtlantisJava/geometry/IdDictLArCalorimeter.xml b/graphics/AtlantisJava/geometry/IdDictLArCalorimeter.xml
deleted file mode 100755
index 9eac43e8636..00000000000
--- a/graphics/AtlantisJava/geometry/IdDictLArCalorimeter.xml
+++ /dev/null
@@ -1,694 +0,0 @@
-<IdDictionary name="LArCalorimeter" version="fullAtlas" >
-
- <field name="part" >
- <label name="LArEM" value="1" />
- <label name="LArHEC" value="2" />
- <label name="LArFCAL" value="3" />
- <label name="LArOnline" value="4" />
- <label name="LArOnlineCalib" value="5" />
- <label name="LArEMdisc" value="-1" />
- <label name="LArHECdisc" value="-2" />
- <label name="LArFCALdisc" value="-3" />
- </field>
-
- <field name="barrel-endcap">
- <label name="negative-endcap-inner-wheel" value="-3" />
- <label name="negative-endcap-outer-wheel" value="-2" />
- <label name="negative-barrel" value="-1" />
- <label name="barrel" value="0" />
- <label name="positive-barrel" value="+1" />
- <label name="positive-endcap-outer-wheel" value="+2" />
- <label name="positive-endcap-inner-wheel" value="+3" />
- </field>
-
- <field name="barrel-ec">
- <label name="barrel" value="0" />
- <label name="endcap" value="1" />
- </field>
-
- <field name="pos_neg">
- <label name="negative-side" value="0" />
- <label name="positive-side" value="1" />
- </field>
-
- <subregion name="LArFCAL-module" >
- <range field="phi-fcal" minvalue="0" maxvalue="15" wraparound="TRUE" />
- </subregion>
-
- <subregion name="LArEM-extralarge-module" >
- <range field="phi" minvalue="0" maxvalue="31" wraparound="TRUE" />
- </subregion>
-
- <subregion name="LArEM-large-module" >
- <range field="phi" minvalue="0" maxvalue="63" wraparound="TRUE" />
- </subregion>
-
- <subregion name="LArEM-thin-module" >
- <range field="phi" minvalue="0" maxvalue="255" wraparound="TRUE" />
- </subregion>
-
-
-
- <!-- EM Barrel -->
-
- <subregion name="LArEM-barrel" >
- <range field="part" value="LArEM" />
- <range field="barrel-endcap" values="negative-barrel positive-barrel" />
- </subregion>
-
- <region group="lar_em" name="LArEM-barrel-00"
- next_samp="LArEM-barrel-10 LArEM-barrel-11"
- next_subdet="LArEM-outer-wheel-10 LArEM-outer-wheel-00"
- eta0="0.0" deta="0.025" phi0="0.0" dphi="64" >
- <reference subregion="LArEM-barrel" />
- <range field="sampling" value="0" />
- <range field="region" value="0" />
- <range field="eta" minvalue="0" maxvalue="60" />
- <reference subregion="LArEM-large-module" />
- </region>
-
- <region group="lar_em" name="LArEM-barrel-10" next_abs_eta="LArEM-barrel-11"
- prev_samp="LArEM-barrel-00"
- next_samp="LArEM-barrel-20"
- eta0="0.003125" deta="0.003125" phi0="0.0" dphi="64" >
- <reference subregion="LArEM-barrel" />
- <range field="sampling" value="1" />
- <range field="region" value="0" />
- <range field="eta" minvalue="1" maxvalue="447" />
- <reference subregion="LArEM-large-module" />
- </region>
-
- <region group="lar_em" name="LArEM-barrel-11"
- prev_samp="LArEM-barrel-00"
- next_samp="LArEM-barrel-21"
- eta0="1.4" deta="0.025" phi0="0.0" dphi="256" >
- <reference subregion="LArEM-barrel" />
- <range field="sampling" value="1" />
- <range field="region" value="1" />
- <range field="eta" minvalue="0" maxvalue="2" />
- <reference subregion="LArEM-thin-module" />
- </region>
-
- <region group="lar_em" name="LArEM-barrel-20" next_abs_eta="LArEM-barrel-21"
- prev_samp="LArEM-barrel-10"
- next_samp="LArEM-barrel-30"
- eta0="0.0" deta="0.025" phi0="0.0" dphi="256" >
- <reference subregion="LArEM-barrel" />
- <range field="sampling" value="2" />
- <range field="region" value="0" />
- <range field="eta" minvalue="0" maxvalue="55" />
- <reference subregion="LArEM-thin-module" />
- </region>
-
- <region group="lar_em" name="LArEM-barrel-21"
- prev_samp="LArEM-barrel-11"
- next_subdet="LArEM-outer-wheel-10"
- eta0="1.4" deta="0.075" phi0="0.0" dphi="256" >
- <reference subregion="LArEM-barrel" />
- <range field="sampling" value="2" />
- <range field="region" value="1" />
- <range field="eta" value="0" />
- <reference subregion="LArEM-thin-module" />
- </region>
-
- <region group="lar_em" name="LArEM-barrel-30"
- prev_samp="LArEM-barrel-20" eta0="0.0" deta="0.05" phi0="0.0" dphi="256" >
- <reference subregion="LArEM-barrel" />
- <range field="sampling" value="3" />
- <range field="region" value="0" />
- <range field="eta" minvalue="0" maxvalue="26" />
- <reference subregion="LArEM-thin-module" />
- </region>
-
-
-
- <!-- EM outer wheel -->
-
- <subregion name="LArEM-outer-wheel" >
- <range field="part" value="LArEM" />
- <range field="barrel-endcap" values="negative-endcap-outer-wheel positive-endcap-outer-wheel" />
- </subregion>
-
- <region group="lar_em" name="LArEM-outer-wheel-00"
- next_samp="LArEM-outer-wheel-12"
- prev_subdet="LArEM-barrel-00"
- eta0="1.5" deta="0.025" phi0="0.0" dphi="64" >
- <reference subregion="LArEM-outer-wheel" />
- <range field="sampling" value="0" />
- <range field="region" value="0" />
- <range field="eta" minvalue="0" maxvalue="11" />
- <reference subregion="LArEM-large-module" />
- </region>
-
- <region group="lar_em" name="LArEM-outer-wheel-10" next_abs_eta="LArEM-outer-wheel-11"
- next_samp="LArEM-outer-wheel-20"
- prev_subdet="LArEM-barrel-00 LArEM-barrel-21"
- eta0="1.375" deta="0.05" phi0="0.0" dphi="64" >
- <reference subregion="LArEM-outer-wheel" />
- <range field="sampling" value="1" />
- <range field="region" value="0" />
- <range field="eta" value="0" />
- <reference subregion="LArEM-large-module" />
- </region>
-
- <region group="lar_em" name="LArEM-outer-wheel-11" next_abs_eta="LArEM-outer-wheel-12"
- next_samp="LArEM-outer-wheel-21" eta0="1.425" deta="0.025" phi0="0.0" dphi="64" >
- <reference subregion="LArEM-outer-wheel" />
- <range field="sampling" value="1" />
- <range field="region" value="1" />
- <range field="eta" minvalue="0" maxvalue="2" />
- <reference subregion="LArEM-large-module" />
- </region>
-
- <region group="lar_em" name="LArEM-outer-wheel-12" next_abs_eta="LArEM-outer-wheel-13"
- prev_samp="LArEM-outer-wheel-00"
- next_samp="LArEM-outer-wheel-21" eta0="1.5" deta="0.003125" phi0="0.0" dphi="64" >
- <reference subregion="LArEM-outer-wheel" />
- <range field="sampling" value="1" />
- <range field="region" value="2" />
- <range field="eta" minvalue="0" maxvalue="95" />
- <reference subregion="LArEM-large-module" />
- </region>
-
- <region group="lar_em" name="LArEM-outer-wheel-13" next_abs_eta="LArEM-outer-wheel-14"
- next_samp="LArEM-outer-wheel-21" eta0="1.8" deta="0.0041666666667" phi0="0.0" dphi="64" >
- <reference subregion="LArEM-outer-wheel" />
- <range field="sampling" value="1" />
- <range field="region" value="3" />
- <range field="eta" minvalue="0" maxvalue="47" />
- <reference subregion="LArEM-large-module" />
- </region>
-
- <region group="lar_em" name="LArEM-outer-wheel-14" next_abs_eta="LArEM-outer-wheel-15"
- next_samp="LArEM-outer-wheel-21" eta0="2.0" deta="0.00625" phi0="0.0" dphi="64" >
- <reference subregion="LArEM-outer-wheel" />
- <range field="sampling" value="1" />
- <range field="region" value="4" />
- <range field="eta" minvalue="0" maxvalue="63" />
- <reference subregion="LArEM-large-module" />
- </region>
-
- <region group="lar_em" name="LArEM-outer-wheel-15"
- next_samp="LArEM-outer-wheel-21" eta0="2.4" deta="0.025" phi0="0.0" dphi="64" >
- <reference subregion="LArEM-outer-wheel" />
- <range field="sampling" value="1" />
- <range field="region" value="5" />
- <range field="eta" minvalue="0" maxvalue="3" />
- <reference subregion="LArEM-large-module" />
- </region>
-
- <region group="lar_em" name="LArEM-outer-wheel-20" next_abs_eta="LArEM-outer-wheel-21"
- prev_samp="LArEM-outer-wheel-10" eta0="1.375" deta="0.05" phi0="0.0" dphi="256" >
- <reference subregion="LArEM-outer-wheel" />
- <range field="sampling" value="2" />
- <range field="region" value="0" />
- <range field="eta" value="0" />
- <reference subregion="LArEM-thin-module" />
- </region>
-
- <region group="lar_em" name="LArEM-outer-wheel-21" next_abs_eta="LArEM-inner-wheel-10"
- prev_samp="LArEM-outer-wheel-11 LArEM-outer-wheel-12 LArEM-outer-wheel-13 LArEM-outer-wheel-14 LArEM-outer-wheel-15"
- next_samp="LArEM-outer-wheel-30" eta0="1.425" deta="0.025" phi0="0.0" dphi="256" >
- <reference subregion="LArEM-outer-wheel" />
- <range field="sampling" value="2" />
- <range field="region" value="1" />
- <range field="eta" minvalue="0" maxvalue="42" />
- <reference subregion="LArEM-thin-module" />
- </region>
-
- <region group="lar_em" name="LArEM-outer-wheel-30" next_abs_eta="LArEM-inner-wheel-20"
- prev_samp="LArEM-outer-wheel-21" eta0="1.5" deta="0.05" phi0="0.0" dphi="256" >
- <reference subregion="LArEM-outer-wheel" />
- <range field="sampling" value="3" />
- <range field="region" value="0" />
- <range field="eta" minvalue="0" maxvalue="19" />
- <reference subregion="LArEM-thin-module" />
- </region>
-
-
-
-
-
-
- <!-- EM inner wheel -->
-
- <subregion name="LArEM-inner-wheel" >
- <range field="part" value="LArEM" />
- <range field="barrel-endcap" values="negative-endcap-inner-wheel positive-endcap-inner-wheel" />
- </subregion>
-
- <region group="lar_em" name="LArEM-inner-wheel-10"
- next_samp="LArEM-inner-wheel-20" eta0="2.5" deta="0.1" phi0="0.0" dphi="64" >
- <reference subregion="LArEM-inner-wheel" />
- <range field="sampling" value="1" />
- <range field="region" value="0" />
- <range field="eta" minvalue="0" maxvalue="6" />
- <reference subregion="LArEM-large-module" />
- </region>
-
- <region group="lar_em" name="LArEM-inner-wheel-20"
- prev_samp="LArEM-inner-wheel-10" eta0="2.5" deta="0.1" phi0="0.0" dphi="64" >
- <reference subregion="LArEM-inner-wheel" />
- <range field="sampling" value="2" />
- <range field="region" value="0" />
- <range field="eta" minvalue="0" maxvalue="6" />
- <reference subregion="LArEM-large-module" />
- </region>
-
-
-
-
-
- <!--
-
- LArHEC
-
- -->
-
- <subregion name="LArHEC" >
- <range field="part" value="LArHEC" />
- <range field="barrel-endcap" values="negative-endcap-outer-wheel positive-endcap-outer-wheel" />
- </subregion>
-
- <region group="lar_hec" name="LArHEC-00" next_abs_eta="LArHEC-01"
- next_samp="LArHEC-10" eta0="1.5" deta="0.1" phi0="0.0" dphi="64" >
- <reference subregion="LArHEC" />
- <range field="sampling" value="0" />
- <range field="region" value="0" />
- <range field="eta" minvalue="0" maxvalue="9" />
- <reference subregion="LArEM-large-module" />
- </region>
-
- <region group="lar_hec" name="LArHEC-10" next_abs_eta="LArHEC-11"
- next_samp="LArHEC-20" prev_samp="LArHEC-00" eta0="1.5" deta="0.1" phi0="0.0" dphi="64" >
- <reference subregion="LArHEC" />
- <range field="sampling" value="1" />
- <range field="region" value="0" />
- <range field="eta" minvalue="0" maxvalue="9" />
- <reference subregion="LArEM-large-module" />
- </region>
-
- <region group="lar_hec" name="LArHEC-20" next_abs_eta="LArHEC-21"
- next_samp="LArHEC-30" prev_samp="LArHEC-10" eta0="1.6" deta="0.1" phi0="0.0" dphi="64" >
- <reference subregion="LArHEC" />
- <range field="sampling" values="2" />
- <range field="region" value="0" />
- <range field="eta" minvalue="1" maxvalue="9" />
- <reference subregion="LArEM-large-module" />
- </region>
-
- <region group="lar_hec" name="LArHEC-30" next_abs_eta="LArHEC-31"
- prev_samp="LArHEC-20" eta0="1.7" deta="0.1" phi0="0.0" dphi="64" >
- <reference subregion="LArHEC" />
- <range field="sampling" values="3" />
- <range field="region" value="0" />
- <range field="eta" minvalue="2" maxvalue="9" />
- <reference subregion="LArEM-large-module" />
- </region>
-
- <region group="lar_hec" name="LArHEC-01"
- next_samp="LArHEC-11" eta0="2.5" deta="0.2" phi0="0.0" dphi="32" >
- <reference subregion="LArHEC" />
- <range field="sampling" value="0" />
- <range field="region" value="1" />
- <range field="eta" minvalue="0" maxvalue="3" />
- <reference subregion="LArEM-extralarge-module" />
- </region>
-
- <region group="lar_hec" name="LArHEC-11" next_abs_eta="LArFCAL-1"
- next_samp="LArHEC-21" prev_samp="LArHEC-01" eta0="2.5" deta="0.2" phi0="0.0" dphi="32" >
- <reference subregion="LArHEC" />
- <range field="sampling" value="1" />
- <range field="region" value="1" />
- <range field="eta" minvalue="0" maxvalue="2" />
- <reference subregion="LArEM-extralarge-module" />
- </region>
-
- <region group="lar_hec" name="LArHEC-21"
- next_samp="LArHEC-31" prev_samp="LArHEC-11" eta0="2.5" deta="0.2" phi0="0.0" dphi="32" >
- <reference subregion="LArHEC" />
- <range field="sampling" value="2" />
- <range field="region" value="1" />
- <range field="eta" minvalue="0" maxvalue="2" />
- <reference subregion="LArEM-extralarge-module" />
- </region>
-
- <region group="lar_hec" name="LArHEC-31"
- prev_samp="LArHEC-21" eta0="2.5" deta="0.2" phi0="0.0" dphi="32" >
- <reference subregion="LArHEC" />
- <range field="sampling" value="3" />
- <range field="region" value="1" />
- <range field="eta" minvalue="0" maxvalue="3" />
- <reference subregion="LArEM-extralarge-module" />
- </region>
-
-
-
-
- <!--
-
- LArFCAL
-
- -->
-
- <subregion name="LArFCAL" >
- <range field="part" value="LArFCAL" />
- <range field="barrel-endcap" values="negative-endcap-outer-wheel positive-endcap-outer-wheel" />
- </subregion>
-
- <region group="lar_fcal" name="LArFCAL-1"
- eta0="3.2" deta="0.025" phi0="0.0" dphi="16" >
- <reference subregion="LArFCAL" />
- <range field="module" value="1" />
- <range field="eta-fcal" minvalue="0" maxvalue="62" />
- <reference subregion="LArFCAL-module" />
- </region>
-
- <region group="lar_fcal" name="LArFCAL-2a"
- eta0="3.2" deta="0.05" phi0="0.0" dphi="16" >
- <reference subregion="LArFCAL" />
- <range field="module" value="2" />
- <range field="eta-fcal" minvalue="0" maxvalue="29" />
- <range field="phi-fcal" values="0 7 8 15" />
- </region>
-
- <region group="lar_fcal" name="LArFCAL-2b"
- eta0="3.2" deta="0.05" phi0="0.0" dphi="16" >
- <reference subregion="LArFCAL" />
- <range field="module" value="2" />
- <range field="eta-fcal" minvalue="0" maxvalue="30" />
- <range field="phi-fcal" values="3 4 11 12" />
- </region>
-
- <region group="lar_fcal" name="LArFCAL-2c"
- eta0="3.2" deta="0.05" phi0="0.0" dphi="16" >
- <reference subregion="LArFCAL" />
- <range field="module" value="2" />
- <range field="eta-fcal" minvalue="0" maxvalue="31" />
- <range field="phi-fcal" values="1 2 5 6 9 10 13 14" />
- </region>
-
- <region group="lar_fcal" name="LArFCAL-3a"
- eta0="3.2" deta="0.1" phi0="0.0" dphi="16" >
- <reference subregion="LArFCAL" />
- <range field="module" value="3" />
- <range field="eta-fcal" minvalue="0" maxvalue="14" />
- <range field="phi-fcal" values="2 10" />
- </region>
-
- <region group="lar_fcal" name="LArFCAL-3b"
- eta0="3.2" deta="0.1" phi0="0.0" dphi="16" >
- <reference subregion="LArFCAL" />
- <range field="module" value="3" />
- <range field="eta-fcal" minvalue="0" maxvalue="15" />
- <range field="phi-fcal" values="0 1 3 4 5 6 7 8 9 11 12 13 14 15" />
- </region>
-
-
-
- <!--
-
- Disconnected Channels
-
- -->
-
- <subregion name="LArEM-barreldisc" >
- <range field="part" value="LArEMdisc" />
- <range field="barrel-endcap" values="negative-barrel positive-barrel" />
- </subregion>
-
- <region group="lar_em" name="LArEM-barrel-00disconnected" >
- <reference subregion="LArEM-barreldisc" />
- <range field="sampling" value="0" />
- <range field="region" value="0" />
- <range field="eta" minvalue="61" maxvalue="63" />
- <reference subregion="LArEM-large-module" />
- </region>
-
- <region group="lar_em" name="LArEM-barrel-10disconnected" >
- <reference subregion="LArEM-barreldisc" />
- <range field="sampling" value="1" />
- <range field="region" value="0" />
- <range field="eta" value="0" />
- <reference subregion="LArEM-large-module" />
- </region>
-
- <region group="lar_em" name="LArEM-barrel-30disconnected" >
- <reference subregion="LArEM-barreldisc" />
- <range field="sampling" value="3" />
- <range field="region" value="0" />
- <range field="eta" value="27" />
- <reference subregion="LArEM-thin-module" />
- </region>
-
-
- <subregion name="LArEM-outer-wheeldisc" >
- <range field="part" value="LArEMdisc" />
- <range field="barrel-endcap" values="negative-endcap-outer-wheel positive-endcap-outer-wheel" />
- </subregion>
-
- <region group="lar_em" name="LArEM-outer-wheel-00disconnected" >
- <reference subregion="LArEM-outer-wheeldisc" />
- <range field="sampling" value="0" />
- <range field="region" value="0" />
- <range field="eta" minvalue="12" maxvalue="19" />
- <reference subregion="LArEM-large-module" />
- </region>
-
- <region group="lar_em" name="LArEM-outer-wheel-11disconnected" >
- <reference subregion="LArEM-outer-wheeldisc" />
- <range field="sampling" value="1" />
- <range field="region" value="1" />
- <range field="eta" minvalue="3" maxvalue="6" />
- <reference subregion="LArEM-large-module" />
- </region>
-
- <region group="lar_em" name="LArEM-outer-wheel-13disconnected" >
- <reference subregion="LArEM-outer-wheeldisc" />
- <range field="sampling" value="1" />
- <range field="region" value="3" />
- <range field="eta" minvalue="48" maxvalue="63" />
- <reference subregion="LArEM-large-module" />
- </region>
-
- <region group="lar_em" name="LArEM-outer-wheel-15disconnected" >
- <reference subregion="LArEM-outer-wheeldisc" />
- <range field="sampling" value="1" />
- <range field="region" value="5" />
- <range field="eta" minvalue="4" maxvalue="7" />
- <reference subregion="LArEM-large-module" />
- </region>
-
-
- <subregion name="LArEM-inner-wheeldisc" >
- <range field="part" value="LArEMdisc" />
- <range field="barrel-endcap" values="negative-endcap-inner-wheel positive-endcap-inner-wheel" />
- </subregion>
-
- <region group="lar_em" name="LArEM-inner-wheel-10disconnected" >
- <reference subregion="LArEM-inner-wheeldisc" />
- <range field="sampling" value="1" />
- <range field="region" value="0" />
- <range field="eta" value="7" />
- <reference subregion="LArEM-large-module" />
- </region>
-
- <region group="lar_em" name="LArEM-inner-wheel-20disconnected" >
- <reference subregion="LArEM-inner-wheeldisc" />
- <range field="sampling" value="2" />
- <range field="region" value="0" />
- <range field="eta" value="7" />
- <reference subregion="LArEM-large-module" />
- </region>
-
-
-
- <subregion name="LArHECdisc" >
- <range field="part" value="LArHECdisc" />
- <range field="barrel-endcap" values="negative-endcap-outer-wheel positive-endcap-outer-wheel" />
- </subregion>
-
- <region group="lar_hec" name="LArHEC-20disconnected" >
- <reference subregion="LArHECdisc" />
- <range field="sampling" values="2" />
- <range field="region" value="0" />
- <range field="eta" value="0" />
- <reference subregion="LArEM-large-module" />
- </region>
-
- <region group="lar_hec" name="LArHEC-30disconnected" >
- <reference subregion="LArHECdisc" />
- <range field="sampling" values="3" />
- <range field="region" value="0" />
- <range field="eta" minvalue="0" maxvalue="1" />
- <reference subregion="LArEM-large-module" />
- </region>
-
- <region group="lar_hec" name="LArHEC-11disconnected" >
- <reference subregion="LArHECdisc" />
- <range field="sampling" value="1" />
- <range field="region" value="1" />
- <range field="eta" value="3" />
- <reference subregion="LArEM-extralarge-module" />
- </region>
-
- <region group="lar_hec" name="LArHEC-21disconnected" >
- <reference subregion="LArHECdisc" />
- <range field="sampling" value="2" />
- <range field="region" value="1" />
- <range field="eta" value="3" />
- <reference subregion="LArEM-extralarge-module" />
- </region>
-
-
- <subregion name="LArFCALdisc" >
- <range field="part" value="LArFCALdisc" />
- <range field="barrel-endcap" values="negative-endcap-outer-wheel positive-endcap-outer-wheel" />
- </subregion>
-
- <region group="lar_fcal" name="LArFCAL-1disconnected" >
- <reference subregion="LArFCALdisc" />
- <range field="module" value="1" />
- <range field="eta-fcal" value="63" />
- <reference subregion="LArFCAL-module" />
- </region>
-
- <region group="lar_fcal" name="LArFCAL-2adisconnected" >
- <reference subregion="LArFCALdisc" />
- <range field="module" value="2" />
- <range field="eta-fcal" minvalue="30" maxvalue="31" />
- <range field="phi-fcal" values="0 7 8 15" />
- </region>
-
- <region group="lar_fcal" name="LArFCAL-2bdisconnected"
- eta0="3.2" deta="0.05" phi0="0.0" dphi="0.4" >
- <reference subregion="LArFCALdisc" />
- <range field="module" value="2" />
- <range field="eta-fcal" value="31" />
- <range field="phi-fcal" values="3 4 11 12" />
- </region>
-
- <region group="lar_fcal" name="LArFCAL-3adisconnected" >
- <reference subregion="LArFCALdisc" />
- <range field="module" value="3" />
- <range field="eta-fcal" value="15" />
- <range field="phi-fcal" values="2 10" />
- </region>
-
-
- <!-- LAr Online -->
-
-
- <!-- LArOnline -Barrel -->
-
- <subregion name="LArOnline-Barrel">
- <range field="part" value="LArOnline" />
- <range field="barrel-ec" values="barrel" />
- </subregion>
-
- <region group="LArOnline" name="laronline-barrel">
- <reference subregion="LArOnline-Barrel" />
- <range field="pos_neg" values="negative-side positive-side" />
- <range field="feedthrough" minvalue="0" maxvalue="31" />
- <range field="slot" minvalue="1" maxvalue="14" />
- <range field="channel_in_slot" minvalue="0" maxvalue="127" />
- </region>
-
- <!-- LArOnline-EndCap Standard -->
-
- <subregion name="LArOnline-Endcap">
- <range field="part" value="LArOnline" />
- <range field="barrel-ec" values="endcap" />
- </subregion>
-
- <region group="LArOnline" name="laronline-endcap-standard">
- <reference subregion="LArOnline-Endcap" />
- <range field="pos_neg" values="negative-side positive-side" />
- <range field="feedthrough" values="0 1 4 5 7 8 11 12 13 14 17 18 19 20 23 24" />
- <range field="slot" minvalue="1" maxvalue="13" />
- <range field="channel_in_slot" minvalue="0" maxvalue="127" />
- </region>
-
- <!-- LArOnline-Endcap-Special -->
-
- <region group="LArOnline" name="laronline-endcap-special" >
- <reference subregion="LArOnline-Endcap" />
- <range field="pos_neg" values="negative-side positive-side" />
- <range field="feedthrough" values="2 9 15 21" />
- <range field="slot" minvalue="1" maxvalue="15" />
- <range field="channel_in_slot" minvalue="0" maxvalue="127" />
- </region>
-
- <!-- LArOnline-HEC-->
-
- <region group="LArOnline" name="laronline-hec">
- <reference subregion="LArOnline-Endcap" />
- <range field="pos_neg" values="negative-side positive-side" />
- <range field="feedthrough" values="3 10 16 22" />
- <range field="slot" values="1 2 5 6 7 8 9 10" />
- <range field="channel_in_slot" minvalue="0" maxvalue="127" />
- </region>
-
- <!-- LArOnline-FCAL-->
-
- <region group="LArOnline" name="laronlinefcal" >
- <reference subregion="LArOnline-Endcap" />
- <range field="pos_neg" values="negative-side positive-side" />
- <range field="feedthrough" value="6" />
- <range field="slot" minvalue="1" maxvalue="14" />
- <range field="channel_in_slot" minvalue="0" maxvalue="127" />
- </region>
-
- <!-- LArOnline -Barrel Calib -->
-
- <subregion name="LArOnline-Barrel-Calib">
- <range field="part" value="LArOnlineCalib" />
- <range field="barrel-ec" values="barrel" />
- </subregion>
-
- <region group="LArOnline" name="laronline-barrel-calib">
- <reference subregion="LArOnline-Barrel-Calib" />
- <range field="pos_neg" values="negative-side positive-side" />
- <range field="feedthrough" minvalue="0" maxvalue="31" />
- <range field="slot" value="15" />
- <range field="channel_in_slot" minvalue="0" maxvalue="127" />
- </region>
-
- <!-- LArOnline-EndCap Standard Calib -->
-
- <subregion name="LArOnline-Endcap-Calib">
- <range field="part" value="LArOnlineCalib" />
- <range field="barrel-ec" values="endcap" />
- </subregion>
-
- <region group="LArOnline" name="laronline-endcap-standard">
- <reference subregion="LArOnline-Endcap-Calib" />
- <range field="pos_neg" values="negative-side positive-side" />
- <range field="feedthrough" values="0 1 4 5 7 8 11 12 13 14 17 18 19 20 23 24" />
- <range field="slot" value="15" />
- <range field="channel_in_slot" minvalue="0" maxvalue="127" />
- </region>
-
- <!-- LArOnline-HEC CALIB -->
-
- <region group="LArOnline" name="laronline-hec-calib">
- <reference subregion="LArOnline-Endcap-Calib" />
- <range field="pos_neg" values="negative-side positive-side" />
- <range field="feedthrough" values="3 10 16 22" />
- <range field="slot" values="3 4 12" />
- <range field="channel_in_slot" minvalue="0" maxvalue="127" />
- </region>
-
- <!-- LArOnline-FCAL CALIB -->
-
- <region group="LArOnline" name="laronline-fcal-calib">
- <reference subregion="LArOnline-Endcap-Calib" />
- <range field="pos_neg" values="negative-side positive-side" />
- <range field="feedthrough" values="6" />
- <range field="slot" value="16" />
- <range field="channel_in_slot" minvalue="0" maxvalue="127" />
- </region>
-
-
-</IdDictionary>
-
diff --git a/graphics/AtlantisJava/geometry/IdDictLArElectrode.xml b/graphics/AtlantisJava/geometry/IdDictLArElectrode.xml
deleted file mode 100755
index 948ccf3d099..00000000000
--- a/graphics/AtlantisJava/geometry/IdDictLArElectrode.xml
+++ /dev/null
@@ -1,327 +0,0 @@
-<IdDictionary name="LArElectrode" version="fullAtlas" >
-
- <field name="detector" >
- <label name="EMB" value="0" />
- <label name="EMBPS" value="1" />
- <label name="EMEC" value="2" />
- <label name="EMECPS" value="3" />
- <label name="HEC" value="4" />
- <label name="FCAL" value="5" />
- <label name="EMBPUR" value="6" />
- <label name="ECPUR" value="7" />
- </field>
-
- <field name="configuration" >
- <label name="Atlas" value="1" />
- <label name="TestBeam" value="2" />
- </field>
-
- <field name="zside">
- <label name="A" value="0" />
- <label name="C" value="1" />
- </field>
-
- <field name="module">
- </field>
-
- <field name="hvphi" >
- </field>
-
- <field name="hveta" >
- </field>
-
- <field name="hvgap" >
- </field>
-
- <field name="electrode">
- </field>
-
-
- <!-- LAr Electrodes-->
-
- <subregion name="AtlasLArElectrode">
- <range field="configuration" value="Atlas" />
- </subregion>
-
- <!--EMB-FT=-1 -->
- <region group="LArElec" name="EM-BARREL-ALL">
- <reference subregion="AtlasLArElectrode" />
- <range field="detector" value="EMB" />
- <range field="zside" values="0 1" />
- <range field="module" minvalue="0" maxvalue="15" />
- <range field="hvphi" values="1" />
- <range field="hveta" minvalue="1" maxvalue="7" />
- <range field="hvgap" values="0 1" />
- <range field="electrode" minvalue="0" maxvalue="31" />
- </region>
-
- <!--EMB-FT=0 -->
- <region group="LArElec" name="EM-BARREL-FT0">
- <reference subregion="AtlasLArElectrode" />
- <range field="detector" value="EMB" />
- <range field="zside" values="0 1" />
- <range field="module" minvalue="0" maxvalue="15" />
- <range field="hvphi" values="0" />
- <range field="hveta" minvalue="1" maxvalue="7" />
- <range field="hvgap" values="0 1" />
- <range field="electrode" minvalue="32" maxvalue="63" />
- </region>
-
- <!--EMBPS -->
- <region group="LArElec" name="EM-BARREL-PS">
- <reference subregion="AtlasLArElectrode" />
- <range field="detector" value="EMBPS" />
- <range field="zside" values="0 1" />
- <range field="module" minvalue="0" maxvalue="31" />
- <range field="hvphi" values="0 1" />
- <range field="hveta" minvalue="1" maxvalue="4" />
- <range field="hvgap" values="0 1" />
- <!--note that this value 'electrode' is DUMMY until confirmation by Hostachy-->
- <range field="electrode" value="0" />
- </region>
-
- <!--EMEC-INNER-WHEEL-->
- <region group="LArElec" name="EM-ENDCAP-INNER-S1">
- <reference subregion="AtlasLArElectrode" />
- <range field="detector" value="EMEC" />
- <range field="zside" values="0 1" />
- <range field="module" minvalue="0" maxvalue="7" />
- <range field="hvphi" value="1" />
- <range field="hveta" minvalue="7" maxvalue="8" />
- <range field="hvgap" values="0 1" />
- <range field="electrode" minvalue="0" maxvalue="3" />
- </region>
- <region group="LArElec" name="EM-ENDCAP-INNER-S2">
- <reference subregion="AtlasLArElectrode" />
- <range field="detector" value="EMEC" />
- <range field="zside" values="0 1" />
- <range field="module" minvalue="0" maxvalue="7" />
- <range field="hvphi" value="2" />
- <range field="hveta" minvalue="7" maxvalue="8" />
- <range field="hvgap" values="0 1" />
- <range field="electrode" minvalue="4" maxvalue="7" />
- </region>
- <region group="LArElec" name="EM-ENDCAP-INNER-S3">
- <reference subregion="AtlasLArElectrode" />
- <range field="detector" value="EMEC" />
- <range field="zside" values="0 1" />
- <range field="module" minvalue="0" maxvalue="7" />
- <range field="hvphi" value="3" />
- <range field="hveta" minvalue="7" maxvalue="8" />
- <range field="hvgap" values="0 1" />
- <range field="electrode" minvalue="8" maxvalue="11" />
- </region>
- <region group="LArElec" name="EM-ENDCAP-INNER-S4">
- <reference subregion="AtlasLArElectrode" />
- <range field="detector" value="EMEC" />
- <range field="zside" values="0 1" />
- <range field="module" minvalue="0" maxvalue="7" />
- <range field="hvphi" value="4" />
- <range field="hveta" minvalue="7" maxvalue="8" />
- <range field="hvgap" values="0 1" />
- <range field="electrode" minvalue="12" maxvalue="15" />
- </region>
- <region group="LArElec" name="EM-ENDCAP-INNER-S5">
- <reference subregion="AtlasLArElectrode" />
- <range field="detector" value="EMEC" />
- <range field="zside" values="0 1" />
- <range field="module" minvalue="0" maxvalue="7" />
- <range field="hvphi" value="5" />
- <range field="hveta" minvalue="7" maxvalue="8" />
- <range field="hvgap" values="0 1" />
- <range field="electrode" minvalue="16" maxvalue="19" />
- </region>
- <region group="LArElec" name="EM-ENDCAP-INNER-S6">
- <reference subregion="AtlasLArElectrode" />
- <range field="detector" value="EMEC" />
- <range field="zside" values="0 1" />
- <range field="module" minvalue="0" maxvalue="7" />
- <range field="hvphi" value="6" />
- <range field="hveta" minvalue="7" maxvalue="8" />
- <range field="hvgap" values="0 1" />
- <range field="electrode" minvalue="20" maxvalue="23" />
- </region>
- <region group="LArElec" name="EM-ENDCAP-INNER-S7">
- <reference subregion="AtlasLArElectrode" />
- <range field="detector" value="EMEC" />
- <range field="zside" values="0 1" />
- <range field="module" minvalue="0" maxvalue="7" />
- <range field="hvphi" value="7" />
- <range field="hveta" minvalue="7" maxvalue="8" />
- <range field="hvgap" values="0 1" />
- <range field="electrode" minvalue="24" maxvalue="27" />
- </region>
- <region group="LArElec" name="EM-ENDCAP-INNER-S8">
- <reference subregion="AtlasLArElectrode" />
- <range field="detector" value="EMEC" />
- <range field="zside" values="0 1" />
- <range field="module" minvalue="0" maxvalue="7" />
- <range field="hvphi" value="8" />
- <range field="hveta" minvalue="7" maxvalue="8" />
- <range field="hvgap" values="0 1" />
- <range field="electrode" minvalue="28" maxvalue="31" />
- </region>
-
- <!--EMEC-OUTER-WHEEL-->
- <region group="LArElec" name="EM-ENDCAP-OUTER-S1">
- <reference subregion="AtlasLArElectrode" />
- <range field="detector" value="EMEC" />
- <range field="zside" values="0 1" />
- <range field="module" minvalue="0" maxvalue="7" />
- <range field="hvphi" value="1" />
- <range field="hveta" minvalue="0" maxvalue="6" />
- <range field="hvgap" values="0 1" />
- <range field="electrode" minvalue="0" maxvalue="23" />
- </region>
- <region group="LArElec" name="EM-ENDCAP-OUTER-S2">
- <reference subregion="AtlasLArElectrode" />
- <range field="detector" value="EMEC" />
- <range field="zside" values="0 1" />
- <range field="module" minvalue="0" maxvalue="7" />
- <range field="hvphi" value="2" />
- <range field="hveta" minvalue="0" maxvalue="6" />
- <range field="hvgap" values="0 1" />
- <range field="electrode" minvalue="24" maxvalue="47" />
- </region>
- <region group="LArElec" name="EM-ENDCAP-OUTER-S3">
- <reference subregion="AtlasLArElectrode" />
- <range field="detector" value="EMEC" />
- <range field="zside" values="0 1" />
- <range field="module" minvalue="0" maxvalue="7" />
- <range field="hvphi" value="3" />
- <range field="hveta" minvalue="0" maxvalue="6" />
- <range field="hvgap" values="0 1" />
- <range field="electrode" minvalue="48" maxvalue="71" />
- </region>
- <region group="LArElec" name="EM-ENDCAP-OUTER-S4">
- <reference subregion="AtlasLArElectrode" />
- <range field="detector" value="EMEC" />
- <range field="zside" values="0 1" />
- <range field="module" minvalue="0" maxvalue="7" />
- <range field="hvphi" value="4" />
- <range field="hveta" minvalue="0" maxvalue="6" />
- <range field="hvgap" values="0 1" />
- <range field="electrode" minvalue="72" maxvalue="95" />
- </region>
-
- <!--EMEC-PS-->
- <region group="LArElec" name="EM-ENDCAP-PS">
- <reference subregion="AtlasLArElectrode" />
- <range field="detector" value="EMECPS" />
- <range field="zside" values="0 1" />
- <range field="module" minvalue="0" maxvalue="31" />
- <range field="hvphi" value="0" />
- <range field="hveta" value="0" />
- <range field="hvgap" values="0 1" />
- <range field="electrode" value="0" />
- </region>
-
- <!--HEC-->
- <region group="LArElec" name="HEC-ETA1">
- <reference subregion="AtlasLArElectrode" />
- <range field="detector" value="HEC" />
- <range field="zside" values="0 1" />
- <range field="module" minvalue="0" maxvalue="31" />
- <range field="hvphi" value="0" />
- <range field="hveta" value="1" />
- <range field="hvgap" minvalue="0" maxvalue="3" />
- <range field="electrode" minvalue="1" maxvalue="8" />
- </region>
-
- <region group="LArElec" name="HEC-ETA2">
- <reference subregion="AtlasLArElectrode" />
- <range field="detector" value="HEC" />
- <range field="zside" values="0 1" />
- <range field="module" minvalue="0" maxvalue="31" />
- <range field="hvphi" value="0" />
- <range field="hveta" value="2" />
- <range field="hvgap" minvalue="0" maxvalue="3" />
- <range field="electrode" minvalue="9" maxvalue="24" />
- </region>
-
- <region group="LArElec" name="HEC-ETA3">
- <reference subregion="AtlasLArElectrode" />
- <range field="detector" value="HEC" />
- <range field="zside" values="0 1" />
- <range field="module" minvalue="0" maxvalue="31" />
- <range field="hvphi" value="0" />
- <range field="hveta" value="3" />
- <range field="hvgap" minvalue="0" maxvalue="3" />
- <range field="electrode" minvalue="25" maxvalue="32" />
- </region>
-
- <region group="LArElec" name="HEC-ETA4">
- <reference subregion="AtlasLArElectrode" />
- <range field="detector" value="HEC" />
- <range field="zside" values="0 1" />
- <range field="module" minvalue="0" maxvalue="31" />
- <range field="hvphi" value="0" />
- <range field="hveta" value="4" />
- <range field="hvgap" minvalue="0" maxvalue="3" />
- <range field="electrode" minvalue="33" maxvalue="40" />
- </region>
-
- <!--FCAL-->
-
- <!--FCAL1-->
- <region group="LArElec" name="FCAL-S1">
- <reference subregion="AtlasLArElectrode" />
- <range field="detector" value="FCAL" />
- <range field="zside" values="0 1" />
- <range field="module" minvalue="0" maxvalue="15" />
- <range field="hvphi" value="0" />
- <range field="hveta" value="1" />
- <range field="hvgap" minvalue="0" maxvalue="3" />
- <range field="electrode" value="0" />
- </region>
-
- <region group="LArElec" name="FCAL-S2">
- <reference subregion="AtlasLArElectrode" />
- <range field="detector" value="FCAL" />
- <range field="zside" values="0 1" />
- <range field="module" minvalue="0" maxvalue="7" />
- <range field="hvphi" value="0" />
- <range field="hveta" value="2" />
- <range field="hvgap" minvalue="0" maxvalue="3" />
- <range field="electrode" value="0" />
- </region>
-
- <region group="LArElec" name="FCAL-S3">
- <reference subregion="AtlasLArElectrode" />
- <range field="detector" value="FCAL" />
- <range field="zside" values="0 1" />
- <range field="module" minvalue="0" maxvalue="3" />
- <range field="hvphi" value="0" />
- <range field="hveta" value="3" />
- <range field="hvgap" minvalue="0" maxvalue="3" />
- <range field="electrode" value="0" />
- </region>
-
-
- <!--EMBPUR-->
- <region group="LArElec" name="EMB-PUR">
- <reference subregion="AtlasLArElectrode" />
- <range field="detector" value="EMBPUR" />
- <range field="zside" values="0 1" />
- <range field="module" minvalue="1" maxvalue="5" />
- <range field="hvphi" value="0" />
- <range field="hveta" minvalue="0" />
- <range field="hvgap" minvalue="0" maxvalue="1" />
- <range field="electrode" value="0" />
- </region>
-
- <!--ECPUR-->
- <region group="LArElec" name="EC-PUR">
- <reference subregion="AtlasLArElectrode" />
- <range field="detector" value="ECPUR" />
- <range field="zside" values="0 1" />
- <range field="module" minvalue="1" maxvalue="10" />
- <range field="hvphi" value="0" />
- <range field="hveta" minvalue="0" />
- <range field="hvgap" minvalue="0" maxvalue="1" />
- <range field="electrode" value="0" />
- </region>
-
-
-</IdDictionary>
-
diff --git a/graphics/AtlantisJava/geometry/IdDictLArHighVoltage.xml b/graphics/AtlantisJava/geometry/IdDictLArHighVoltage.xml
deleted file mode 100755
index b0a26c9558e..00000000000
--- a/graphics/AtlantisJava/geometry/IdDictLArHighVoltage.xml
+++ /dev/null
@@ -1,222 +0,0 @@
-
-<IdDictionary name="LArHighVoltage" version="fullAtlas" >
-
- <field name="configuration" >
- <label name="Atlas" value="1" />
- <label name="TestBeam" value="2" />
- </field>
-
- <field name="cannode">
- </field>
-
- <field name="hvline">
- </field>
-
- <field name="partition" >
- </field>
-
- <field name="canline">
- </field>
-
-
- <!-- HighVoltage Lines-->
-
- <subregion name="AtlasHighVoltage">
- <range field="configuration" value="Atlas" />
- </subregion>
-
-
- <!-- LArHV HEC -->
-
- <region group="LArHV" name="LArHV-HEC-A">
- <reference subregion="AtlasHighVoltage" />
- <range field="cannode" minvalue="48" maxvalue="79" />
- <range field="hvline" minvalue="0" maxvalue="15" />
- <range field="partition" value="1" />
- <range field="canline" value="1" />
- </region>
-
- <region group="LArHV" name="LArHV-HEC-C">
- <reference subregion="AtlasHighVoltage" />
- <range field="cannode" minvalue="148" maxvalue="179" />
- <range field="hvline" minvalue="0" maxvalue="15" />
- <range field="partition" value="1" />
- <range field="canline" value="1" />
- </region>
-
- <!-- LArHV FCAL -->
-
- <region group="LArHV" name="LArHV-FCAL-A">
- <reference subregion="AtlasHighVoltage" />
- <range field="cannode" minvalue="80" maxvalue="93" />
- <range field="hvline" minvalue="0" maxvalue="7" />
- <range field="partition" value="1" />
- <range field="canline" value="1" />
- </region>
-
- <region group="LArHV" name="LArHV-FCAL-C">
- <reference subregion="AtlasHighVoltage" />
- <range field="cannode" minvalue="180" maxvalue="193" />
- <range field="hvline" minvalue="0" maxvalue="7" />
- <range field="partition" value="1" />
- <range field="canline" value="1" />
- </region>
-
-
- <!-- LArHV EMB -->
-
- <!-- EMB-A-SIDE-->
- <region group="LArHV" name="LArHV-EMB-A-STD">
- <reference subregion="AtlasHighVoltage" />
- <range field="cannode" minvalue="200" maxvalue="231" />
- <range field="hvline" minvalue="0" maxvalue="15" />
- <range field="partition" value="1" />
- <range field="canline" value="1" />
- </region>
- <region group="LArHV" name="LArHV-EMB-C-STD">
- <reference subregion="AtlasHighVoltage" />
- <range field="cannode" minvalue="232" maxvalue="263" />
- <range field="hvline" minvalue="0" maxvalue="15" />
- <range field="partition" value="1" />
- <range field="canline" value="1" />
- </region>
- <region group="LArHV" name="LArHV-EMB-A-SPE">
- <reference subregion="AtlasHighVoltage" />
- <range field="cannode" values="296 297 306 307" />
- <range field="hvline" minvalue="0" maxvalue="15" />
- <range field="partition" value="1" />
- <range field="canline" value="1" />
- </region>
- <region group="LArHV" name="LArHV-EMB-C-SPE">
- <reference subregion="AtlasHighVoltage" />
- <range field="cannode" values="299 304 305 308 309" />
- <range field="hvline" minvalue="0" maxvalue="15" />
- <range field="partition" value="1" />
- <range field="canline" value="1" />
- </region>
-
-
-
- <!-- LArHV EMBPS -->
-
- <region group="LArHV" name="LArHV-EMBPS-A">
- <reference subregion="AtlasHighVoltage" />
- <range field="cannode" minvalue="264" maxvalue="279" />
- <range field="hvline" minvalue="0" maxvalue="15" />
- <range field="partition" value="1" />
- <range field="canline" value="1" />
- </region>
-
- <region group="LArHV" name="LArHV-EMBPS-C">
- <reference subregion="AtlasHighVoltage" />
- <range field="cannode" minvalue="280" maxvalue="295" />
- <range field="hvline" minvalue="0" maxvalue="15" />
- <range field="partition" value="1" />
- <range field="canline" value="1" />
- </region>
-
-
- <!-- LArHV EMEC -->
-
- <region group="LArHV" name="LArHV-EMEC-A1">
- <reference subregion="AtlasHighVoltage" />
- <range field="cannode" minvalue="0" maxvalue="47" />
- <range field="hvline" minvalue="0" maxvalue="15" />
- <range field="partition" value="1" />
- <range field="canline" value="1" />
- </region>
- <region group="LArHV" name="LArHV-EMEC-A2">
- <reference subregion="AtlasHighVoltage" />
- <range field="cannode" minvalue="320" maxvalue="322" />
- <range field="hvline" minvalue="0" maxvalue="15" />
- <range field="partition" value="1" />
- <range field="canline" value="1" />
- </region>
- <region group="LArHV" name="LArHV-EMEC-C1">
- <reference subregion="AtlasHighVoltage" />
- <range field="cannode" minvalue="100" maxvalue="147" />
- <range field="hvline" minvalue="0" maxvalue="15" />
- <range field="partition" value="1" />
- <range field="canline" value="1" />
- </region>
- <region group="LArHV" name="LArHV-EMEC-C2">
- <reference subregion="AtlasHighVoltage" />
- <range field="cannode" values="324 325" />
- <range field="hvline" minvalue="0" maxvalue="15" />
- <range field="partition" value="1" />
- <range field="canline" value="1" />
- </region>
-
-
- <!-- LArHV EMECPS -->
-
- <region group="LArHV" name="LArHV-EMECPS-A">
- <reference subregion="AtlasHighVoltage" />
- <range field="cannode" minvalue="312" maxvalue="315" />
- <range field="hvline" minvalue="0" maxvalue="15" />
- <range field="partition" value="1" />
- <range field="canline" value="1" />
- </region>
-
- <region group="LArHV" name="LArHV-EMECPS-C">
- <reference subregion="AtlasHighVoltage" />
- <range field="cannode" minvalue="316" maxvalue="319" />
- <range field="hvline" minvalue="0" maxvalue="15" />
- <range field="partition" value="1" />
- <range field="canline" value="1" />
- </region>
-
-
- <!-- LArHV EMPUR -->
-
- <region group="LArHV" name="LArEMBPUR-A">
- <reference subregion="AtlasHighVoltage" />
- <range field="cannode" minvalue="300" maxvalue="303" />
- <range field="hvline" minvalue="0" maxvalue="15" />
- <range field="partition" value="1" />
- <range field="canline" value="1" />
- </region>
-
-
- <!-- All these lines are free to use -->
-
- <region group="LArHV" name="NOCONN-NEW">
- <reference subregion="AtlasHighVoltage" />
- <range field="cannode" values="310 311" />
- <range field="hvline" minvalue="0" maxvalue="15" />
- <range field="partition" value="1" />
- <range field="canline" value="1" />
- </region>
- <region group="LArHV" name="NOCONN-A">
- <reference subregion="AtlasHighVoltage" />
- <range field="cannode" values="323" />
- <range field="hvline" minvalue="0" maxvalue="15" />
- <range field="partition" value="1" />
- <range field="canline" value="1" />
- </region>
- <region group="LArHV" name="NOCONN-C">
- <reference subregion="AtlasHighVoltage" />
- <range field="cannode" values="326 327" />
- <range field="hvline" minvalue="0" maxvalue="15" />
- <range field="partition" value="1" />
- <range field="canline" value="1" />
- </region>
- <region group="LArHV" name="FREE-A">
- <reference subregion="AtlasHighVoltage" />
- <range field="cannode" minvalue="94" maxvalue="99" />
- <range field="hvline" minvalue="0" maxvalue="15" />
- <range field="partition" value="1" />
- <range field="canline" value="1" />
- </region>
- <region group="LArHV" name="FREE-B">
- <reference subregion="AtlasHighVoltage" />
- <range field="cannode" minvalue="194" maxvalue="199" />
- <range field="hvline" minvalue="0" maxvalue="15" />
- <range field="partition" value="1" />
- <range field="canline" value="1" />
- </region>
-
-
-
-</IdDictionary>
-
diff --git a/graphics/AtlantisJava/geometry/IdDictTileCalorimeter.xml b/graphics/AtlantisJava/geometry/IdDictTileCalorimeter.xml
deleted file mode 100755
index 76ab90dd0d5..00000000000
--- a/graphics/AtlantisJava/geometry/IdDictTileCalorimeter.xml
+++ /dev/null
@@ -1,398 +0,0 @@
-<IdDictionary name="TileCalorimeter" version="fullAtlasAndTestBeam" >
-
- <field name="section" >
- <label name="Online" value="0" />
- <label name="Barrel" value="1" />
- <label name="Extended-barrel" value="2" />
- <label name="ITC-gap-scintillator" value="3" />
- <label name="Testbeam" value="4" />
- </field>
-
- <field name="side" >
- <label name="positive" value="+1" />
- <label name="negative" value="-1" />
- </field>
-
- <subregion name="cylinder-pos" >
- <range field="side" value="positive" />
- <range field="module" minvalue="0" maxvalue="63" />
- </subregion>
-
- <subregion name="cylinder-neg" >
- <range field="side" value="negative" />
- <range field="module" minvalue="0" maxvalue="63" />
- </subregion>
-
- <subregion name="cylinder" >
- <range field="side" />
- <range field="module" minvalue="0" maxvalue="63" />
- </subregion>
-
- <subregion name="pmt1" >
- <range field="pmt" value="0" />
- <range field="adc" minvalue="0" maxvalue="1" />
- </subregion>
-
- <subregion name="pmt2" >
- <range field="pmt" minvalue="0" maxvalue="1" />
- <range field="adc" minvalue="0" maxvalue="1" />
- </subregion>
-
- <subregion name="tower0AB" >
- <range field="tower" value="0" />
- <range field="sampling" minvalue="0" maxvalue="1" />
- <reference subregion="pmt2" />
- </subregion>
-
- <subregion name="tower0" >
- <range field="tower" value="0" />
- <range field="sampling" minvalue="0" maxvalue="2" />
- <reference subregion="pmt2" />
- </subregion>
-
- <subregion name="tower1" >
- <range field="tower" value="1" />
- <range field="sampling" minvalue="0" maxvalue="1" />
- <reference subregion="pmt2" />
- </subregion>
-
- <subregion name="tower2" >
- <range field="tower" value="2" />
- <range field="sampling" minvalue="0" maxvalue="2" />
- <reference subregion="pmt2" />
- </subregion>
-
- <subregion name="tower3" >
- <range field="tower" value="3" />
- <range field="sampling" minvalue="0" maxvalue="1" />
- <reference subregion="pmt2" />
- </subregion>
-
- <subregion name="tower4" >
- <range field="tower" value="4" />
- <range field="sampling" minvalue="0" maxvalue="2" />
- <reference subregion="pmt2" />
- </subregion>
-
- <subregion name="tower5" >
- <range field="tower" value="5" />
- <range field="sampling" minvalue="0" maxvalue="1" />
- <reference subregion="pmt2" />
- </subregion>
-
- <subregion name="tower6" >
- <range field="tower" value="6" />
- <range field="sampling" minvalue="0" maxvalue="2" />
- <reference subregion="pmt2" />
- </subregion>
-
- <subregion name="tower7" >
- <range field="tower" value="7" />
- <range field="sampling" minvalue="0" maxvalue="1" />
- <reference subregion="pmt2" />
- </subregion>
-
- <subregion name="tower8" >
- <range field="tower" value="8" />
- <range field="sampling" minvalue="0" maxvalue="1" />
- <reference subregion="pmt2" />
- </subregion>
-
- <subregion name="tower9" >
- <range field="tower" value="9" />
- <range field="sampling" value="0" />
- <reference subregion="pmt2" />
- </subregion>
-
- <subregion name="tower10" >
- <range field="tower" value="10" />
- <range field="sampling" minvalue="1" maxvalue="2" />
- <reference subregion="pmt2" />
- </subregion>
-
- <subregion name="tower11" >
- <range field="tower" value="11" />
- <range field="sampling" minvalue="0" maxvalue="1" />
- <reference subregion="pmt2" />
- </subregion>
-
- <subregion name="tower12" >
- <range field="tower" value="12" />
- <range field="sampling" minvalue="0" maxvalue="2" />
- <reference subregion="pmt2" />
- </subregion>
-
- <subregion name="tower13" >
- <range field="tower" value="13" />
- <range field="sampling" minvalue="0" maxvalue="1" />
- <reference subregion="pmt2" />
- </subregion>
-
- <subregion name="tower14" >
- <range field="tower" value="14" />
- <range field="sampling" minvalue="0" maxvalue="1" />
- <reference subregion="pmt2" />
- </subregion>
-
- <subregion name="tower15" >
- <range field="tower" value="15" />
- <range field="sampling" value="0" />
- <reference subregion="pmt2" />
- </subregion>
-
- <subregion name="D4" >
- <range field="tower" value="8" />
- <range field="sampling" value="2" />
- <reference subregion="pmt2" />
- </subregion>
-
- <subregion name="C10" >
- <range field="tower" value="9" />
- <range field="sampling" value="1" />
- <reference subregion="pmt2" />
- </subregion>
-
- <subregion name="E1" >
- <range field="tower" value="10" />
- <range field="sampling" value="3" />
- <reference subregion="pmt1" />
- </subregion>
-
- <subregion name="E2" >
- <range field="tower" value="11" />
- <range field="sampling" value="3" />
- <reference subregion="pmt1" />
- </subregion>
-
- <subregion name="E3" >
- <range field="tower" value="13" />
- <range field="sampling" value="3" />
- <reference subregion="pmt1" />
- </subregion>
-
- <subregion name="E4" >
- <range field="tower" value="15" />
- <range field="sampling" value="3" />
- <reference subregion="pmt1" />
- </subregion>
-
- <region>
- <range field="section" value="Barrel" />
- <reference subregion="cylinder-neg" />
- <reference subregion="tower0AB" />
- </region>
-
- <region>
- <range field="section" value="Barrel" />
- <reference subregion="cylinder-pos" />
- <reference subregion="tower0" />
- </region>
-
- <region>
- <range field="section" value="Barrel" />
- <reference subregion="cylinder-neg" />
- <reference subregion="tower1" />
- </region>
-
- <region>
- <range field="section" value="Barrel" />
- <reference subregion="cylinder-pos" />
- <reference subregion="tower1" />
- </region>
-
- <region>
- <range field="section" value="Barrel" />
- <reference subregion="cylinder-neg" />
- <reference subregion="tower2" />
- </region>
-
- <region>
- <range field="section" value="Barrel" />
- <reference subregion="cylinder-pos" />
- <reference subregion="tower2" />
- </region>
-
- <region>
- <range field="section" value="Barrel" />
- <reference subregion="cylinder-neg" />
- <reference subregion="tower3" />
- </region>
-
- <region>
- <range field="section" value="Barrel" />
- <reference subregion="cylinder-pos" />
- <reference subregion="tower3" />
- </region>
-
- <region>
- <range field="section" value="Barrel" />
- <reference subregion="cylinder-neg" />
- <reference subregion="tower4" />
- </region>
-
- <region>
- <range field="section" value="Barrel" />
- <reference subregion="cylinder-pos" />
- <reference subregion="tower4" />
- </region>
-
- <region>
- <range field="section" value="Barrel" />
- <reference subregion="cylinder-neg" />
- <reference subregion="tower5" />
- </region>
-
- <region>
- <range field="section" value="Barrel" />
- <reference subregion="cylinder-pos" />
- <reference subregion="tower5" />
- </region>
-
- <region>
- <range field="section" value="Barrel" />
- <reference subregion="cylinder-neg" />
- <reference subregion="tower6" />
- </region>
-
- <region>
- <range field="section" value="Barrel" />
- <reference subregion="cylinder-pos" />
- <reference subregion="tower6" />
- </region>
-
- <region>
- <range field="section" value="Barrel" />
- <reference subregion="cylinder-neg" />
- <reference subregion="tower7" />
- </region>
-
- <region>
- <range field="section" value="Barrel" />
- <reference subregion="cylinder-pos" />
- <reference subregion="tower7" />
- </region>
-
- <region>
- <range field="section" value="Barrel" />
- <reference subregion="cylinder-neg" />
- <reference subregion="tower8" />
- </region>
-
- <region>
- <range field="section" value="Barrel" />
- <reference subregion="cylinder-pos" />
- <reference subregion="tower8" />
- </region>
-
- <region>
- <range field="section" value="Barrel" />
- <reference subregion="cylinder-neg" />
- <reference subregion="tower9" />
- </region>
-
- <region>
- <range field="section" value="Barrel" />
- <reference subregion="cylinder-pos" />
- <reference subregion="tower9" />
- </region>
-
- <region>
- <range field="section" value="Extended-barrel" />
- <reference subregion="cylinder" />
- <reference subregion="tower10" />
- </region>
-
- <region>
- <range field="section" value="Extended-barrel" />
- <reference subregion="cylinder" />
- <reference subregion="tower11" />
- </region>
-
- <region>
- <range field="section" value="Extended-barrel" />
- <reference subregion="cylinder" />
- <reference subregion="tower12" />
- </region>
-
- <region>
- <range field="section" value="Extended-barrel" />
- <reference subregion="cylinder" />
- <reference subregion="tower13" />
- </region>
-
- <region>
- <range field="section" value="Extended-barrel" />
- <reference subregion="cylinder" />
- <reference subregion="tower14" />
- </region>
-
- <region>
- <range field="section" value="Extended-barrel" />
- <reference subregion="cylinder" />
- <reference subregion="tower15" />
- </region>
-
- <region>
- <range field="section" value="ITC-gap-scintillator" />
- <reference subregion="cylinder" />
- <reference subregion="D4" />
- </region>
-
- <region>
- <range field="section" value="ITC-gap-scintillator" />
- <reference subregion="cylinder" />
- <reference subregion="C10" />
- </region>
-
- <region>
- <range field="section" value="ITC-gap-scintillator" />
- <reference subregion="cylinder" />
- <reference subregion="E1" />
- </region>
-
- <region>
- <range field="section" value="ITC-gap-scintillator" />
- <reference subregion="cylinder" />
- <reference subregion="E2" />
- </region>
-
- <region>
- <range field="section" value="ITC-gap-scintillator" />
- <reference subregion="cylinder" />
- <reference subregion="E3" />
- </region>
-
- <region>
- <range field="section" value="ITC-gap-scintillator" />
- <reference subregion="cylinder" />
- <reference subregion="E4" />
- </region>
-
-
- <region>
- <range field="section" value="Online" />
- <range field="ros" minvalue="1" maxvalue="4" />
- <range field="drawer" minvalue="0" maxvalue="63" />
- <range field="channel" minvalue="0" maxvalue="47" />
- <range field="gain" minvalue="0" maxvalue="1" />
- </region>
-
- <region>
- <range field="section" value="Online" />
- <range field="ros" value="0" />
- <range field="drawer" values="0 1 2 3 4 5 6 7 8 9 10 11 16 17 18 19 20 21 22 255" />
- <range field="channel" minvalue="0" maxvalue="15" />
- <range field="gain" minvalue="0" maxvalue="0" />
- </region>
-
- <region>
- <range field="section" value="Testbeam" />
- <range field="type" minvalue="-1" maxvalue="10" />
- <range field="tbmodule" minvalue="0" maxvalue="255" />
- <range field="tbchannel" minvalue="0" maxvalue="63" />
- <range field="tbdummy1" minvalue="0" maxvalue="15" />
- <range field="tbdummy2" minvalue="0" maxvalue="3" />
- <range field="tbdummy3" minvalue="0" maxvalue="3" />
- </region>
-
-</IdDictionary>
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diff --git a/graphics/AtlantisJava/lib/batik-xml.jar b/graphics/AtlantisJava/lib/batik-xml.jar
deleted file mode 100644
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diff --git a/graphics/AtlantisJava/lib/xml-apis-ext.jar b/graphics/AtlantisJava/lib/xml-apis-ext.jar
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diff --git a/graphics/AtlantisJava/share/InteractiveServer.py b/graphics/AtlantisJava/share/InteractiveServer.py
deleted file mode 100755
index 1b1adeb2a9c..00000000000
--- a/graphics/AtlantisJava/share/InteractiveServer.py
+++ /dev/null
@@ -1,483 +0,0 @@
-#!/usr/bin/env python
-
-# InteractiveServer.py
-#
-# author: Zdenek Maxa, UCL HEP group (zdenek.maxa --at-- hep.ucl.ac.uk)
-#
-# CVS location: offline/graphics/AtlantisJava/share/InteractiveServer.py
-#
-# Interface between the Athena Python interactive prompt and the Atlantis
-# event display. This server script takes over the interactive prompt of
-# Athena. The Atlantis user can then type Athena commands directly in the
-# Atlantis dialog from where they are sent to Athena through this server.
-# Commands: e.g. changing/querying job options and executing .initialize(),
-# .execute() and .finalize() methods of algorithms, etc.
-#
-#
-# setting up Atlantis - Interactive Athena:
-# 0) get_files InteractiveServer.py [from 'run' directory]
-# 1) athena -i <job_options.py> [launch Athena in the interactive mode]
-# 2) theApp.initialize()
-# 3) execfile ("InteractiveServer.py")
-# 4) if the server started successfully an info message is printed and
-# denoted string has to be copied into the Atlantis Interactive Athena
-# dialog (Atlantis menu: File -> Interactive Athena)
-#
-# Once the InteractiveServer is started, the Athena prompt is taken over
-# by the server and the user can no longer access it. The server can be
-# shut down by Ctrl+C after which the interactive prompt should be given
-# back to the user.
-#
-#
-# setting up for Athenaeum:
-# argumentInteractiveServerNoAlgTools = True
-# argumentInteractiveServerServerPort = 2323
-# argumentInteractiveServerServerKey = "someKey"
-# execfile ("InteractiveServer.py")
-
-# Multithreaded version, modification made by Julius.Hrivnac -- at -- cern.ch
-# Athenaeum commands can be executed in several parallel threads.
-# Unlike in the single-thread version, all stdout and stderr output
-# goes into system streams, so into the server log file. The result
-# of the "remote script" should be put into answer array so that
-# they are given to the client.
-
-
-# ---------------------------------------------------------------------------
-
-import os, sys, math, traceback, random, time, StringIO, getopt, md5, base64
-import SocketServer
-from SimpleXMLRPCServer import SimpleXMLRPCServer,SimpleXMLRPCRequestHandler
-import cppyy
-
-class AsyncXMLRPCServer(SocketServer.ThreadingMixIn, SimpleXMLRPCServer): pass
-
-# ---------------------------------------------------------------------------
-class InteractiveServer:
- """ """
-
- # <configuration attributes -------->
- debug = False # debug messages to print (False / True)
- keyLength = 15
- minCharValue = 33 # ascii table range (generating key)
- maxCharValue = 126 # ascii table range (generating key)
- minPortNumber = 2000
- maxPortNumber = 20000
- maxAttempts = 5 # number of attempts when creating the server
- resultLengthLimit = 400
- # </configuration attributes -------->
-
- # other attributes
- serverName = ""
- serverPort = 0
- key = ""
- server = None # XMLRPC server instance
-
- vxTool = None # access to vertexing tool (Athena AlgTool)
- visTool = None # access to JiveXML (EventData2XML) (Athena AlgTool)
-
- keyForbiddenChars = ("'", '"', ':')
- noAlgTools = False # if False, AlgTools will be initialised
-
- # answer in a multhreaded invironment are passed in the global array
- global answer
- answer = {}
-
- # -----------------------------------------------------------------------
- def __init__(self, noAlgTools = False, serverPort = 0, key = ""):
- """ """
-
- self.serverName = os.uname()[1]
- self.noAlgTools = noAlgTools
- self.serverPort = serverPort
- self.key = key
- SocketServer.ThreadingTCPServer.daemon_threads = True
-
- # __init__() ------------------------------------------------------------
-
-
- # -----------------------------------------------------------------------
- def makeServer(self):
- """ """
-
- try:
- SimpleXMLRPCServer.allow_reuse_address = 1
- self.server = AsyncXMLRPCServer((self.serverName, self.serverPort), SimpleXMLRPCRequestHandler)
-
- except Exception, why:
- print "\n%s\nCould not create the server on '%s' port: " \
- "'%s'" % (why, self.serverName, self.serverPort)
- if self.debug:
- trace = traceback.format_exception(*sys.exc_info())
- traceString = '\n '.join(trace)
- errorMsg = "ERROR:\n%s\n" % (traceString)
- print errorMsg
- raise
- else:
- print "XMLRPC server created"
-
- # makeServer() ----------------------------------------------------------
-
-
- # -----------------------------------------------------------------------
- def generatePortAndMakeServer(self):
- """ """
-
- alreadyTriedPorts = [] # already tried port numbers
-
- for i in range(self.maxAttempts):
- while 1:
- self.serverPort = random.randint(self.minPortNumber,
- self.maxPortNumber)
- if self.serverPort not in alreadyTriedPorts:
- break
- alreadyTriedPorts.append(self.serverPort)
-
- try:
- self.makeServer()
- except:
- continue
- else:
- break
- else:
- # for loop iterated through exhaustion of the list and wasn't
- # terminated by the break, so the server wasn't created, notify
- # the caller by raising an exception
- raise
-
- # generatePortAndMakeServer() -------------------------------------------
-
-
- # -----------------------------------------------------------------------
- def registerMethod(self, name):
- """ """
-
- methodName = name.__name__
- try:
- self.server.register_function(name)
- except Exception, why:
- print "%s\nCould not register method (%s)" % (why, methodName)
- raise
- else:
- if self.debug:
- print "method '%s()' registered" % methodName
-
- # registerMethod() ------------------------------------------------------
-
-
- # -----------------------------------------------------------------------
- def runServer(self):
- """ """
- # this will probably have to be in a thread if the interactive
- # prompt is to remain at the user's disposal
-
- print "Waiting for requests..."
- try:
- self.server.serve_forever()
- except KeyboardInterrupt:
- try:
- print "Stopped from keyboard, exit"
- print "Closing InteractiveServer:",
- self.server.server_close()
- except:
- print "can't close the server"
- else:
- print "server closed"
- except Exception, why:
- print "%s\nException occured" % why
- raise
-
- # runServer() -----------------------------------------------------------
-
-
- # -----------------------------------------------------------------------
- def execute(self, param = "<empty>"):
-
- print "execute(param = '%s')" % param
- resultMsg = "SUCCESS"
-
- try:
- exec param
- except Exception, why:
- trace = traceback.format_exception(*sys.exc_info())
- traceString = '\n '.join(trace)
- resultMsg = "ERROR:\n%s\n%s\n" % (traceString, why)
- print resultMsg
-
- return str(resultMsg)
-
- # execute() -------------------------------------------------------------
-
-
- # -----------------------------------------------------------------------
- def get(self, name = "<empty>"):
- """ """
-
- print "get(name = '%s')" % name
- resultMsg = "SUCCESS"
-
- try:
- result = eval(name)
- except Exception, why:
- trace = traceback.format_exception(*sys.exc_info())
- traceString = '\n '.join(trace)
- resultMsg = "ERROR:\n%s\n%s\n" % (traceString, why)
- print resultMsg
- return str(resultMsg)
- else:
- return str(result)
-
- # get() -----------------------------------------------------------------
-
-
-
- # -----------------------------------------------------------------------
- def callVertexFit(self, tracksId):
- """Track IDs (tracksId array) are passed to vertex fit algtool"""
-
- print "callVertexFit(tracksId = '%s')" % tracksId
-
- cppyy.loadDictionary('SealSTLDict')
-
- g.std.vector(int)
- vi = g.std.vector(int)(0)
-
- for i in tracksId:
- vi.push_back(i)
-
- print " calling vertexing tool: vxTool.fitAtlantisTracks(",vi,")"
-
- r = self.vxTool.fitAtlantisTracks(vi)
- if r:
- resultMsg = "SUCCESS (get updated event data)"
- else:
- resultMsg = "ERROR while calling vertexing tool"
-
- return resultMsg
-
- # callVertexFit() -------------------------------------------------------
-
-
- # -----------------------------------------------------------------------
- def executeScript(self, param = "<empty>", pid = ""):
- """Execute Python code snippets from Athenaeum plugin"""
-
- errorMsg = "SUCCESS"
- resultMsg = ""
-
- try:
- exec param
- global answer
- try:
- resultMsg = answer[pid]
- del answer[pid]
- except:
- resultMsg = "No resultMsg"
- except Exception, why:
- trace = traceback.format_exception(*sys.exc_info())
- traceString = '\n '.join(trace)
- errorMsg = "ERROR:\n%s\n%s\n" % (traceString, why)
-
- return resultMsg + "\n" + str(errorMsg)
-
- # executeScript() -------------------------------------------------------
-
-
- # -----------------------------------------------------------------------
- # the only method which is exposed (registred) for remote calling
- def process(self, digest = "", request = "<empty>", tracksId = ''):
- """ """
-
- print "\n\n<incoming request> " + 50 * '-'
- if self.debug:
- print "process(request = '%s', tracksId = '%s')" % (request,
- tracksId)
- result = "<empty_result>"
-
- # generate message digest and compare
- md5My = md5.new()
- md5My.update(request)
- md5My.update(self.key)
- myDigest = md5My.digest()
- # received digest is BAE64 encoded, so encode mine as well
- myDigest = base64.encodestring(myDigest)[:-1] # without list '\n'
-
- if digest == myDigest:
- # determine the nature of the request
- # request 'runVertexFit' -> pass tracksId to the algorithm
- if str(request) == "runVertexFit":
- result = self.callVertexFit(tracksId)
-
- # request to process Python code snippet (e.g. from Athenaeum)
- # multiline request
- # tracksId is the client identifier
- elif len(str(request).split('\n')) > 1:
- result = self.executeScript(request, tracksId)
-
- # get event data from JiveXML
- elif str(request) == "eventData":
- self.visTool.execute()
- result = self.visTool.getXML()
-
- # two last characters must be '()' if it's a method to execute
- elif request[-2:] == "()":
- result = self.execute(request)
-
- # if the request contains '=' - it's an assignment to execute
- elif request.find('=') > -1:
- result = self.execute(request)
-
- # it's likely name of a variable to evaluate (or wrong request)
- else:
- result = self.get(request)
- else:
- result = "Request not processed, keys (digests) don't match"
-
-
- # don't print out result messages longer than resultLengthLimit chars
- # in such a case print just the beginning and the end of the message
- limit = self.resultLengthLimit
- print "result to send:"
- if len(result) < limit:
- print "%s" % result
- else:
- print "%s" % result[:limit/2]
- print "\n+++ %s other characters +++\n" % (len(result) - limit)
- print "%s" % result[-limit/2:]
-
- print "</incoming request> " + 50 * '-'
- return result
-
- # process() -------------------------------------------------------------
-
-
- # -----------------------------------------------------------------------
- def generateKey(self):
- """ """
-
- # generate keyLength characters long key
- random.seed()
- while len(self.key) < self.keyLength:
- k = str(chr(random.randint(self.minCharValue, self.maxCharValue)))
- if k in self.keyForbiddenChars:
- continue
- self.key += k
-
- # generateKey() ---------------------------------------------------------
-
- # -----------------------------------------------------------------------
- def printInfo(self):
- """ """
-
- print "String between the quotation marks to copy & paste",
- print "into the dialog:"
- print "\t '%s:%s:%s'" % (self.serverName, self.serverPort, self.key)
-
- # printInfo() -----------------------------------------------------------
-
-
- # -----------------------------------------------------------------------
- def createAlgTools(self):
-
- print "Getting vertexing AlgTool (ToolSvc.VxWrapperTool)"
- # self.vxTool = \
- # theApp.toolsvc().retrieve('ToolSvc.VxWrapperTool')._itool
- self.vxTool = \
- theApp.toolsvc().create('VxWrapperTool','VxWrapperTool',
- cppyy.Pointer(g.IInterface)(0))._itool
-
- print "Getting JiveXML AlgTool (ToolSvc.EventData2XML)"
- # self.visTool = \
- # theApp.toolsvc().retrieve('ToolSvc.EventData2XML')._itool
- self.visTool = \
- theApp.toolsvc().create('EventData2XML','EventData2XML',
- cppyy.Pointer(g.IInterface)(0))._itool
-
- # createAlgTools() ------------------------------------------------------
-
-
- # -----------------------------------------------------------------------
- def start(self):
- """ """
-
- print "Starting Multithreaded InteractiveServer:",
- try:
- # generate key if it wasn't specified as a command line option
- if self.key == "":
- self.generateKey()
-
- # choose random port before creating the server if the port number
- # wasn't specified as a command line option
- if self.serverPort == 0:
- self.generatePortAndMakeServer()
- else:
- self.makeServer()
-
- self.registerMethod(self.process)
- # self.server.register_introspection_functions() # what for?
-
- # don't initialise algtools if --no_algtools command line argument
- if self.noAlgTools == False:
- self.createAlgTools()
-
- self.printInfo()
- self.runServer()
- except Exception, why:
- print "Exception occured."
- print "Reason: %s" % why
-
- # start() ---------------------------------------------------------------
-
-
-# class InteractiveServer ===================================================
-
-
-# ---------------------------------------------------------------------------
-def getArguments():
- """Reading arguments when executing by execfile()"""
-
- # default values
- noAlgTools = False
- serverPort = 0
- serverKey = ""
-
- if globals().has_key("argumentInteractiveServerNoAlgTools"):
- if argumentInteractiveServerNoAlgTools:
- noAlgTools = True
-
- if globals().has_key("argumentInteractiveServerServerPort"):
- port = argumentInteractiveServerServerPort
- try:
- serverPort = int(port)
- except ValueError:
- msg = "Incorrectly specified port number: %s" % port
- raise Exception(msg)
-
- if globals().has_key("argumentInteractiveServerServerKey"):
- serverKey = argumentInteractiveServerServerKey
-
- return (noAlgTools, serverPort, serverKey)
-
-# getArguments() ------------------------------------------------------------
-
-
-# ---------------------------------------------------------------------------
-def main():
-
- try:
- (noAlgTools, serverPort, key) = getArguments()
- except Exception, why:
- print "Exception occured while reading variable arguments, exit"
- print "Reason: %s" % why
- return
-
- server = InteractiveServer(noAlgTools, serverPort, key)
- server.start()
-
-# main() --------------------------------------------------------------------
-
-
-# ---------------------------------------------------------------------------
-if __name__ == "__main__":
- main()
-# ---------------------------------------------------------------------------
diff --git a/graphics/AtlantisJava/share/MINERVA.jnlp b/graphics/AtlantisJava/share/MINERVA.jnlp
deleted file mode 100644
index f3e3897fe74..00000000000
--- a/graphics/AtlantisJava/share/MINERVA.jnlp
+++ /dev/null
@@ -1,84 +0,0 @@
-<?xml version="1.0" encoding="utf-8"?>
-<!-- JNLP webstart file for Atlantis event display for ATLAS -->
-<!-- MINERVA version -->
-<jnlp
- spec="1.0+"
- codebase="@CODEBASE@"
- href="MINERVA.jnlp">
- <information>
- <title>Atlantis event display for ATLAS</title>
- <vendor>Atlantis team</vendor>
- <homepage href=""/> <!-- should be used from codebase -->
- <description>Atlantis event display for ATLAS</description>
- <!-- <icon href="files/goofy_favicon.ico"/>
- <icon kind="splash" href="files/logo.gif"/> -->
- <offline-allowed/>
- <shortcut online="false">
- <desktop/>
- <menu submenu="Atlantis event display"/>
- </shortcut>
- </information>
- <security>
- <all-permissions/>
- </security>
- <resources>
- <j2se version="1.6+" max-heap-size="512m"/>
-
- <jar href="lib/commons-cli-1.0.jar"/>
- <jar href="lib/Jama.jar"/>
- <jar href="lib/jas-aida-dev.jar"/>
- <jar href="lib/jas-aida.jar"/>
- <jar href="lib/jas-freehep-base.jar"/>
- <jar href="lib/jas-freehep-hep.jar"/>
- <jar href="lib/jas-jas-plotter.jar"/>
- <jar href="lib/jas-jel.jar"/>
- <jar href="lib/jas-JMinuit.jar"/>
- <jar href="lib/jogl.jar"/>
- <jar href="lib/jh.jar"/>
- <jar href="lib/oncrpc.jar"/>
- <jar href="lib/log4j-1.2.15.jar"/>
- <jar href="lib/ostermillerutils_1_05_00.jar"/>
- <jar href="lib/wired-base-4.0.beta.3-SNAPSHOT.jar"/>
- <jar href="lib/ws-commons-util-1.0.2.jar"/>
- <jar href="lib/xercesImpl.jar"/>
- <jar href="lib/xml-apis.jar"/>
- <jar href="lib/xmlrpc-client-3.1.jar"/>
- <jar href="lib/xmlrpc-common-3.1.jar"/>
- <jar href="lib/jlibeps.jar"/>
- <jar href="lib/xmlrpc-server-3.1.jar"/>
- <jar href="lib/commons-logging-1.1.jar"/>
- <jar href="lib/commons-codec-1.4.jar"/>
- <jar href="lib/xml-apis-ext.jar"/>
- <jar href="lib/batik-dom.jar"/>
- <jar href="lib/batik-anim.jar"/>
- <jar href="lib/batik-svggen.jar"/>
- <jar href="lib/batik-css.jar"/>
- <jar href="lib/batik-bridge.jar"/>
- <jar href="lib/batik-parser.jar"/>
- <jar href="lib/batik-xml.jar"/>
- <jar href="lib/batik-gui-util.jar"/>
- <jar href="lib/batik-script.jar"/>
- <jar href="lib/batik-transcoder.jar"/>
- <jar href="lib/batik-svg-dom.jar"/>
- <jar href="lib/batik-extension.jar"/>
- <jar href="lib/batik-codec.jar"/>
- <jar href="lib/batik-util.jar"/>
- <jar href="lib/batik-swing.jar"/>
- <jar href="lib/batik-ext.jar"/>
- <jar href="lib/batik-gvt.jar"/>
- <jar href="lib/batik-awt-util.jar"/>
- <jar href="help/help.jar"/>
-
- <jar href="atlantis.jar" main="true"/> <!-- look for main class here -->
- </resources>
-
- <application-desc main-class="atlantis.Atlantis">
- <argument>--config</argument>
- <argument>configuration/config-MINERVA.xml</argument>
- <argument>--debug</argument>
- <argument>DEBUG</argument>
- <argument>--source</argument>
- <argument>http://www.cern.ch/atlas-minerva/MINERVA_tutorial_events.zip</argument>
- </application-desc>
-
-</jnlp>
diff --git a/graphics/AtlantisJava/share/atlantis b/graphics/AtlantisJava/share/atlantis
deleted file mode 100755
index d9e99ce0a1c..00000000000
--- a/graphics/AtlantisJava/share/atlantis
+++ /dev/null
@@ -1,13 +0,0 @@
-#!/bin/sh
-
-# running Atlantis in the Athena environment
-
-# Check JRE version. Workaround because "java -version:1.6+" does not work on lxplus
-JAVAVERSION=`java -version 2>&1 | grep "java version" | awk '{print $3}' | tr -d \" | awk '{split($0, array, ".")} END{print array[2]}'`
-if [[ $JAVAVERSION -lt 6 ]]; then
- echo "Atlantis required Java version 1.6 or greater"
- exit 1
-fi
-
-ATLANTISJAVA_HOME=`dirname $0`/../AtlantisJava
-java -Xms128m -Xmx1024m -jar $ATLANTISJAVA_HOME/atlantis.jar $*
diff --git a/graphics/AtlantisJava/share/atlantis.jnlp b/graphics/AtlantisJava/share/atlantis.jnlp
deleted file mode 100644
index 39612b50c59..00000000000
--- a/graphics/AtlantisJava/share/atlantis.jnlp
+++ /dev/null
@@ -1,81 +0,0 @@
-<?xml version="1.0" encoding="utf-8"?>
-<!-- JNLP webstart file for Atlantis event display for ATLAS -->
-<jnlp
- spec="1.0+"
- codebase="@CODEBASE@"
- href="atlantis.jnlp">
- <information>
- <title>Atlantis event display for ATLAS</title>
- <vendor>Atlantis team</vendor>
- <homepage href=""/> <!-- should be used from codebase -->
- <description>Atlantis event display for ATLAS</description>
- <!-- <icon href="files/goofy_favicon.ico"/>
- <icon kind="splash" href="files/logo.gif"/> -->
- <offline-allowed/>
- <shortcut online="false">
- <desktop/>
- <menu submenu="Atlantis event display"/>
- </shortcut>
- </information>
- <security>
- <all-permissions/>
- </security>
- <resources>
- <j2se version="1.6+" max-heap-size="512m"/>
-
- <jar href="lib/commons-cli-1.0.jar"/>
- <jar href="lib/Jama.jar"/>
- <jar href="lib/jas-aida-dev.jar"/>
- <jar href="lib/jas-aida.jar"/>
- <jar href="lib/jas-freehep-base.jar"/>
- <jar href="lib/jas-freehep-hep.jar"/>
- <jar href="lib/jas-jas-plotter.jar"/>
- <jar href="lib/jas-jel.jar"/>
- <jar href="lib/jas-JMinuit.jar"/>
- <jar href="lib/jogl.jar"/>
- <jar href="lib/jh.jar"/>
- <jar href="lib/oncrpc.jar"/>
- <jar href="lib/log4j-1.2.15.jar"/>
- <jar href="lib/ostermillerutils_1_05_00.jar"/>
- <jar href="lib/wired-base-4.0.beta.3-SNAPSHOT.jar"/>
- <jar href="lib/ws-commons-util-1.0.2.jar"/>
- <jar href="lib/xercesImpl.jar"/>
- <jar href="lib/xml-apis.jar"/>
- <jar href="lib/xmlrpc-client-3.1.jar"/>
- <jar href="lib/xmlrpc-common-3.1.jar"/>
- <jar href="lib/jlibeps.jar"/>
- <jar href="lib/xmlrpc-server-3.1.jar"/>
- <jar href="lib/commons-logging-1.1.jar"/>
- <jar href="lib/commons-codec-1.4.jar"/>
- <jar href="lib/xml-apis-ext.jar"/>
- <jar href="lib/batik-dom.jar"/>
- <jar href="lib/batik-anim.jar"/>
- <jar href="lib/batik-svggen.jar"/>
- <jar href="lib/batik-css.jar"/>
- <jar href="lib/batik-bridge.jar"/>
- <jar href="lib/batik-parser.jar"/>
- <jar href="lib/batik-xml.jar"/>
- <jar href="lib/batik-gui-util.jar"/>
- <jar href="lib/batik-script.jar"/>
- <jar href="lib/batik-transcoder.jar"/>
- <jar href="lib/batik-svg-dom.jar"/>
- <jar href="lib/batik-extension.jar"/>
- <jar href="lib/batik-codec.jar"/>
- <jar href="lib/batik-util.jar"/>
- <jar href="lib/batik-swing.jar"/>
- <jar href="lib/batik-ext.jar"/>
- <jar href="lib/batik-gvt.jar"/>
- <jar href="lib/batik-awt-util.jar"/>
-
- <jar href="help/help.jar"/>
-
- <jar href="atlantis.jar" main="true"/> <!-- look for main class here -->
- </resources>
-
- <application-desc main-class="atlantis.Atlantis">
- <argument>--debug</argument>
- <argument>DEBUG</argument>
- </application-desc>
-
-</jnlp>
-
diff --git a/graphics/AtlantisJava/share/atlantis_online b/graphics/AtlantisJava/share/atlantis_online
deleted file mode 100755
index 1d9cace7cfa..00000000000
--- a/graphics/AtlantisJava/share/atlantis_online
+++ /dev/null
@@ -1,15 +0,0 @@
-#!/bin/sh
-
-# running Atlantis in the TDAQ online environment
-# This requires the TDAQ_JAVA_HOME to be defined in the enviroment
-
-JAVA=$TDAQ_JAVA_HOME/bin/java
-
-# Check JRE version. Workaround because "java -version:1.6+" does not work on lxplus
-JAVAVERSION=`$JAVA -version 2>&1 | grep "java version" | awk '{print $3}' | tr -d \" | awk '{split($0, array, ".")} END{print array[2]}'`
-if [[ $JAVAVERSION -lt 6 ]]; then
- echo "Atlantis required Java version 1.6 or greater"
- exit 1
-fi
-
-exec $JAVA -Xms128m -Xmx1024m -jar $EVENTDISPLAY_SW_INST_PATH/share/AtlantisJava/atlantis.jar $*
diff --git a/graphics/AtlantisJava/share/ntupleXML.h b/graphics/AtlantisJava/share/ntupleXML.h
deleted file mode 100644
index c1282f14004..00000000000
--- a/graphics/AtlantisJava/share/ntupleXML.h
+++ /dev/null
@@ -1,1351 +0,0 @@
-//ntupleXML v1.0 - Tim Martin - Aug 07 - tamartin@cern.ch
-//Classes TopViewXML and EventViewXML to output ntuple
-//events to a Atlantis readable xml file
-
-#include "TXMLEngine.h"
-#include <TChain.h>
-#include <TFriendElement.h>
-#include <TFile.h>
-
-#include <iostream>
-#include <string>
-#include <sstream>
-#include <vector>
-#include <iomanip>
-
-//Main class, TopView and EventView classes inherit from this
-class ntupleXML {
- protected:
- std::string dataTypeCon, etaCon, labelCon, pdgIdCon, phiCon, ptCon, typeEVCon, mainTreeName;
- Bool_t FR_Active, TR_Active, FRA_Active, TRA_Active, TA_Active, isTopView;
- Int_t nParticles, Warn, truthPref, Append;
- TChain* activeFile;
- vector<TChain*> fileStore;
- TTree* activeTree;
- TFriendElement* friendTree;
- TXMLEngine* TVXMLEng;
- XMLNodePointer_t event;
- Int_t FR_eventNumber;
- Int_t FR_runNumber;
- Double_t FR_MET_Final_ex;
- Double_t FR_MET_Final_ey;
- Double_t FR_MET_Final_et;
- Double_t TR_MET_Truth_ex;
- Double_t TR_MET_Truth_ey;
- Double_t TR_MET_Truth_et;
- Int_t FR_El_N;
- vector<double>* FR_El_pdgId;
- vector<double>* FR_El_p_T;
- vector<double>* FR_El_phi;
- vector<double>* FR_El_eta;
- Int_t FR_Mu_N;
- vector<double>* FR_Mu_pdgId;
- vector<double>* FR_Mu_p_T;
- vector<double>* FR_Mu_phi;
- vector<double>* FR_Mu_eta;
- Int_t FR_Tau_N;
- vector<double>* FR_Tau_pdgId;
- vector<double>* FR_Tau_p_T;
- vector<double>* FR_Tau_phi;
- vector<double>* FR_Tau_eta;
- Int_t FR_Ph_N;
- vector<double>* FR_Ph_pdgId;
- vector<double>* FR_Ph_p_T;
- vector<double>* FR_Ph_phi;
- vector<double>* FR_Ph_eta;
- Int_t FR_PJet_N;
- vector<double>* FR_PJet_pdgId;
- vector<double>* FR_PJet_p_T;
- vector<double>* FR_PJet_phi;
- vector<double>* FR_PJet_eta;
- vector<int>* FR_PJet_BTagged;
- Int_t FRA_El_N;
- vector<double>* FRA_El_pdgId;
- vector<double>* FRA_El_p_T;
- vector<double>* FRA_El_phi;
- vector<double>* FRA_El_eta;
- Int_t FRA_Mu_N;
- vector<double>* FRA_Mu_pdgId;
- vector<double>* FRA_Mu_p_T;
- vector<double>* FRA_Mu_phi;
- vector<double>* FRA_Mu_eta;
- Int_t FRA_Nu_N;
- vector<double>* FRA_Nu_pdgId;
- vector<double>* FRA_Nu_p_T;
- vector<double>* FRA_Nu_phi;
- vector<double>* FRA_Nu_eta;
- Int_t FRA_HadW_N;
- vector<double>* FRA_HadW_pdgId;
- vector<double>* FRA_HadW_p_T;
- vector<double>* FRA_HadW_phi;
- vector<double>* FRA_HadW_eta;
- Int_t FRA_LepW_N;
- vector<double>* FRA_LepW_pdgId;
- vector<double>* FRA_LepW_p_T;
- vector<double>* FRA_LepW_phi;
- vector<double>* FRA_LepW_eta;
- Int_t FRA_HadTop_N;
- vector<double>* FRA_HadTop_pdgId;
- vector<double>* FRA_HadTop_p_T;
- vector<double>* FRA_HadTop_phi;
- vector<double>* FRA_HadTop_eta;
- Int_t FRA_LepTop_N;
- vector<double>* FRA_LepTop_pdgId;
- vector<double>* FRA_LepTop_p_T;
- vector<double>* FRA_LepTop_phi;
- vector<double>* FRA_LepTop_eta;
- Int_t FRA_Lepb_N;
- vector<double>* FRA_Lepb_pdgId;
- vector<double>* FRA_Lepb_p_T;
- vector<double>* FRA_Lepb_phi;
- vector<double>* FRA_Lepb_eta;
- Int_t FRA_Hadb_N;
- vector<double>* FRA_Hadb_pdgId;
- vector<double>* FRA_Hadb_p_T;
- vector<double>* FRA_Hadb_phi;
- vector<double>* FRA_Hadb_eta;
- Int_t FRA_Hadj_N;
- vector<double>* FRA_Hadj_pdgId;
- vector<double>* FRA_Hadj_p_T;
- vector<double>* FRA_Hadj_phi;
- vector<double>* FRA_Hadj_eta;
- Int_t TRA_El_N;
- vector<double>* TRA_El_pdgId;
- vector<double>* TRA_El_p_T;
- vector<double>* TRA_El_phi;
- vector<double>* TRA_El_eta;
- Int_t TRA_Mu_N;
- vector<double>* TRA_Mu_pdgId;
- vector<double>* TRA_Mu_p_T;
- vector<double>* TRA_Mu_phi;
- vector<double>* TRA_Mu_eta;
- Int_t TRA_Tau_N;
- vector<double>* TRA_Tau_pdgId;
- vector<double>* TRA_Tau_p_T;
- vector<double>* TRA_Tau_phi;
- vector<double>* TRA_Tau_eta;
- Int_t TRA_HadW_N;
- vector<double>* TRA_HadW_pdgId;
- vector<double>* TRA_HadW_p_T;
- vector<double>* TRA_HadW_phi;
- vector<double>* TRA_HadW_eta;
- Int_t TRA_LepW_N;
- vector<double>* TRA_LepW_pdgId;
- vector<double>* TRA_LepW_p_T;
- vector<double>* TRA_LepW_phi;
- vector<double>* TRA_LepW_eta;
- Int_t TRA_HadTop_N;
- vector<double>* TRA_HadTop_pdgId;
- vector<double>* TRA_HadTop_p_T;
- vector<double>* TRA_HadTop_phi;
- vector<double>* TRA_HadTop_eta;
- Int_t TRA_LepTop_N;
- vector<double>* TRA_LepTop_pdgId;
- vector<double>* TRA_LepTop_p_T;
- vector<double>* TRA_LepTop_phi;
- vector<double>* TRA_LepTop_eta;
- Int_t TRA_Bot_N;
- vector<double>* TRA_Bot_pdgId;
- vector<double>* TRA_Bot_p_T;
- vector<double>* TRA_Bot_phi;
- vector<double>* TRA_Bot_eta;
- Int_t TRA_LQ_N;
- vector<double>* TRA_LQ_pdgId;
- vector<double>* TRA_LQ_p_T;
- vector<double>* TRA_LQ_phi;
- vector<double>* TRA_LQ_eta;
- vector<double>* TA_Tru_p_T;
- vector<double>* TA_Tru_phi;
- vector<double>* TA_Tru_eta;
- vector<double>* TA_Tru_pdgId;
- vector<int>* TA_Tru_barcode;
- TBranch* b_FR_eventNumber;
- TBranch* b_FR_runNumber;
- TBranch* b_FR_MET_Final_ex;
- TBranch* b_FR_MET_Final_ey;
- TBranch* b_FR_MET_Final_et;
- TBranch* b_TR_MET_Truth_ex;
- TBranch* b_TR_MET_Truth_ey;
- TBranch* b_TR_MET_Truth_et;
- TBranch* b_FR_El_N;
- TBranch* b_FR_El_pdgId;
- TBranch* b_FR_El_p_T;
- TBranch* b_FR_El_phi;
- TBranch* b_FR_El_eta;
- TBranch* b_FR_Mu_N;
- TBranch* b_FR_Mu_pdgId;
- TBranch* b_FR_Mu_p_T;
- TBranch* b_FR_Mu_phi;
- TBranch* b_FR_Mu_eta;
- TBranch* b_FR_Tau_N;
- TBranch* b_FR_Tau_pdgId;
- TBranch* b_FR_Tau_p_T;
- TBranch* b_FR_Tau_phi;
- TBranch* b_FR_Tau_eta;
- TBranch* b_FR_Ph_N;
- TBranch* b_FR_Ph_pdgId;
- TBranch* b_FR_Ph_p_T;
- TBranch* b_FR_Ph_phi;
- TBranch* b_FR_Ph_eta;
- TBranch* b_FR_PJet_N;
- TBranch* b_FR_PJet_pdgId;
- TBranch* b_FR_PJet_p_T;
- TBranch* b_FR_PJet_phi;
- TBranch* b_FR_PJet_eta;
- TBranch* b_FR_PJet_BTagged;
- TBranch* b_FRA_El_N;
- TBranch* b_FRA_El_pdgId;
- TBranch* b_FRA_El_p_T;
- TBranch* b_FRA_El_phi;
- TBranch* b_FRA_El_eta;
- TBranch* b_FRA_Mu_N;
- TBranch* b_FRA_Mu_pdgId;
- TBranch* b_FRA_Mu_p_T;
- TBranch* b_FRA_Mu_phi;
- TBranch* b_FRA_Mu_eta;
- TBranch* b_FRA_Nu_N;
- TBranch* b_FRA_Nu_pdgId;
- TBranch* b_FRA_Nu_p_T;
- TBranch* b_FRA_Nu_phi;
- TBranch* b_FRA_Nu_eta;
- TBranch* b_FRA_HadW_N;
- TBranch* b_FRA_HadW_pdgId;
- TBranch* b_FRA_HadW_p_T;
- TBranch* b_FRA_HadW_phi;
- TBranch* b_FRA_HadW_eta;
- TBranch* b_FRA_LepW_N;
- TBranch* b_FRA_LepW_pdgId;
- TBranch* b_FRA_LepW_p_T;
- TBranch* b_FRA_LepW_phi;
- TBranch* b_FRA_LepW_eta;
- TBranch* b_FRA_HadTop_N;
- TBranch* b_FRA_HadTop_pdgId;
- TBranch* b_FRA_HadTop_p_T;
- TBranch* b_FRA_HadTop_phi;
- TBranch* b_FRA_HadTop_eta;
- TBranch* b_FRA_LepTop_N;
- TBranch* b_FRA_LepTop_pdgId;
- TBranch* b_FRA_LepTop_p_T;
- TBranch* b_FRA_LepTop_phi;
- TBranch* b_FRA_LepTop_eta;
- TBranch* b_FRA_Lepb_N;
- TBranch* b_FRA_Lepb_pdgId;
- TBranch* b_FRA_Lepb_p_T;
- TBranch* b_FRA_Lepb_phi;
- TBranch* b_FRA_Lepb_eta;
- TBranch* b_FRA_Hadb_N;
- TBranch* b_FRA_Hadb_pdgId;
- TBranch* b_FRA_Hadb_p_T;
- TBranch* b_FRA_Hadb_phi;
- TBranch* b_FRA_Hadb_eta;
- TBranch* b_FRA_Hadj_N;
- TBranch* b_FRA_Hadj_pdgId;
- TBranch* b_FRA_Hadj_p_T;
- TBranch* b_FRA_Hadj_phi;
- TBranch* b_FRA_Hadj_eta;
- TBranch* b_TRA_El_N;
- TBranch* b_TRA_El_pdgId;
- TBranch* b_TRA_El_p_T;
- TBranch* b_TRA_El_phi;
- TBranch* b_TRA_El_eta;
- TBranch* b_TRA_Mu_N;
- TBranch* b_TRA_Mu_pdgId;
- TBranch* b_TRA_Mu_p_T;
- TBranch* b_TRA_Mu_phi;
- TBranch* b_TRA_Mu_eta;
- TBranch* b_TRA_Tau_N;
- TBranch* b_TRA_Tau_pdgId;
- TBranch* b_TRA_Tau_p_T;
- TBranch* b_TRA_Tau_phi;
- TBranch* b_TRA_Tau_eta;
- TBranch* b_TRA_HadW_N;
- TBranch* b_TRA_HadW_pdgId;
- TBranch* b_TRA_HadW_p_T;
- TBranch* b_TRA_HadW_phi;
- TBranch* b_TRA_HadW_eta;
- TBranch* b_TRA_LepW_N;
- TBranch* b_TRA_LepW_pdgId;
- TBranch* b_TRA_LepW_p_T;
- TBranch* b_TRA_LepW_phi;
- TBranch* b_TRA_LepW_eta;
- TBranch* b_TRA_HadTop_N;
- TBranch* b_TRA_HadTop_pdgId;
- TBranch* b_TRA_HadTop_p_T;
- TBranch* b_TRA_HadTop_phi;
- TBranch* b_TRA_HadTop_eta;
- TBranch* b_TRA_LepTop_N;
- TBranch* b_TRA_LepTop_pdgId;
- TBranch* b_TRA_LepTop_p_T;
- TBranch* b_TRA_LepTop_phi;
- TBranch* b_TRA_LepTop_eta;
- TBranch* b_TRA_Bot_N;
- TBranch* b_TRA_Bot_pdgId;
- TBranch* b_TRA_Bot_p_T;
- TBranch* b_TRA_Bot_phi;
- TBranch* b_TRA_Bot_eta;
- TBranch* b_TRA_LQ_N;
- TBranch* b_TRA_LQ_pdgId;
- TBranch* b_TRA_LQ_p_T;
- TBranch* b_TRA_LQ_phi;
- TBranch* b_TRA_LQ_eta;
- TBranch* b_TA_Tru_p_T;
- TBranch* b_TA_Tru_phi;
- TBranch* b_TA_Tru_eta;
- TBranch* b_TA_Tru_pdgId;
- TBranch* b_TA_Tru_barcode;
- //Protected memeber functions
- template<typename TYPE>
- std::string asString(const TYPE&);
- void SetBranches(void);
- void FillBranches(Int_t entryNumber);
- void SetActiveFile(Int_t fileNumber);
- void GetFullReco(void);
- void GetFullRecoAna(void);
- void GetTruthAll(Bool_t onlyMuons);
- void GetTruthAna(Bool_t onlyMuons);
- void GetMET(Bool_t getTruth);
- void StartXML(void);
- void FillXML_ParticleDump(Char_t* nodeName, Char_t* storeGateKey);
- void FillXML_TruthDump(Char_t* nodeName, Char_t* storeGateKey);
- void FillXML_MET(Char_t* storeGateKey);
- void EndXML(Char_t* outputFilename);
- public:
- Bool_t ntuple2XML(Char_t* outputFilename, UInt_t entryNumber, UInt_t fileNumber);
- void Add(Char_t* fileLocation);
- void Clear(void);
- Int_t GetNfiles(void) { return fileStore.size(); }
- Int_t GetNentries(UInt_t fileNumber);
- Bool_t SetWarnLevel(UInt_t warnLevel);
- Bool_t SetTruthPreference(UInt_t truthPreference);
- Bool_t SetFilenameAppend(UInt_t filenameAppend);
-
-};
-
-struct TopViewXML: public ntupleXML {
- TopViewXML(Char_t* fileLocation);
- TopViewXML(void);
- ~TopViewXML(void) {}
-};
-
-struct EventViewXML: public ntupleXML {
- EventViewXML(Char_t* fileLocation);
- EventViewXML(void);
- ~EventViewXML(void) {}
-};
-
-//Constructors//
-
-TopViewXML::TopViewXML(Char_t* fileLocation) {
- isTopView=1;
- Append=1; Warn=1; truthPref=2;
- mainTreeName = "FullReco0";
- ntupleXML::Add(fileLocation);
-}
-
-TopViewXML::TopViewXML(void) {
- isTopView=1;
- Append=1; Warn=1; truthPref=2;
- mainTreeName = "FullReco0";
-}
-
-EventViewXML::EventViewXML(Char_t* fileLocation) {
- isTopView=0;
- Append=1; Warn=1; truthPref=2;
- mainTreeName = "CollectionTree";
- ntupleXML::Add(fileLocation);
-}
-
-EventViewXML::EventViewXML(void) {
- isTopView=0;
- Append=1; Warn=1; truthPref=2;
- mainTreeName = "CollectionTree";
-}
-
-//Inherited public methods//
-
-//ntuple2XML takes an entry from a file loaded in the internal File Chain and writes an
-//atlantis xml file for the event.
-Bool_t ntupleXML::ntuple2XML(Char_t* outputFilename, UInt_t entryNumber, UInt_t fileNumber) {
-
- if (fileNumber >= fileStore.size()) {
- if (Warn>0) { std::cout << "\nntupleXML: Error cannot access file #" << fileNumber
- << ", " << fileStore.size() << " file(s) currently loaded. ";
- }
- return 0;
- }
-
- //Set the required file as activeFile, main tree as activeTree & associate branches
- ntupleXML::SetActiveFile(fileNumber);
-
- if (entryNumber >= activeTree->GetEntries()) {
- if (Warn>0) { std::cout << "\nntupleXML: Error cannot access entry #" << entryNumber
- << ", file #" << fileNumber << " contains " << activeTree->GetEntries() << " entries. ";
- }
- return 0;
- }
-
- //Cannot proceed without FullReco/CollectionTree branches set
- if (!FR_Active) {
- if (Warn>0) { std::cout << "\nntupleXML: Error unable to access " << mainTreeName << " Tree. "; }
- return 0;
- }
-
- //Retrieve event
- ntupleXML::FillBranches(entryNumber);
- nParticles=0;
-
- //Prepare XML document
- ntupleXML::StartXML();
-
- ntupleXML::GetFullReco();
- if (nParticles) { ntupleXML::FillXML_ParticleDump("CompositeParticle","RecoView"); }
-
- ntupleXML::GetMET(0);
- ntupleXML::FillXML_MET("MET_Final");
- if (TR_Active) {
- ntupleXML::GetMET(1);
- ntupleXML::FillXML_MET("MET_Truth");
- } else if (Warn>1) { std::cout << "\nntupleXML: Warning unable to output MET_Truth. "; }
-
- if (FRA_Active) {
- ntupleXML::GetFullRecoAna();
- if (nParticles) { ntupleXML::FillXML_ParticleDump("CompositeParticle","RecoAnaView"); }
- } else if (Warn>1 && isTopView) { std::cout << "\nntupleXML: Warning unable to output FullRecoAna Tree. "; }
-
- if (TA_Active && truthPref == 1) {
- ntupleXML::GetTruthAll(0);
- if (nParticles) { ntupleXML::FillXML_TruthDump("STr",""); }
- ntupleXML::GetTruthAll(1); //Get only muons
- if (nParticles) { ntupleXML::FillXML_TruthDump("SMTr",""); }
- } else if (TRA_Active && truthPref) {
- ntupleXML::GetTruthAna(0);
- if (nParticles) { ntupleXML::FillXML_TruthDump("STr",""); }
- ntupleXML::GetTruthAna(1);
- if (nParticles) { ntupleXML::FillXML_TruthDump("SMTr",""); }
- } else if (Warn>1 && truthPref && isTopView) {
- std::cout << "\nntupleXML: Warning unable to output TruthAna or TruthAll Tree. ";
- }
-
- //Construct filename
- std::string filenameStr(outputFilename), ext;
- ext = filenameStr.substr(filenameStr.length() - 4, 4);
- if (Append) {
- if (ext == ".xml" || ext == ".Xml" || ext == ".XML") {
- filenameStr = filenameStr.substr(0, filenameStr.length() - 4) ;
- if (Append==1) { filenameStr += "_" + asString(FR_eventNumber) + ext; }
- else { filenameStr += "_" + asString(entryNumber) + ext; }
- } else {
- if (Append==1) { filenameStr += "_" + asString(FR_eventNumber) + ".xml"; }
- else { filenameStr += "_" + asString(entryNumber) + ".xml"; }
- }
- } else {
- if (!(ext == ".xml" || ext == ".Xml" || ext == ".XML")) {
- filenameStr += ".xml";
- }
- }
-
- //Write .xml file
- ntupleXML::EndXML((Char_t*) filenameStr.c_str());
- if (Warn>1) { std::cout << "\nntupleXML: Output to " << filenameStr; }
-
- //Return success
- return 1;
-}
-
-Bool_t ntupleXML::SetWarnLevel(UInt_t warnLevel) {
- if (warnLevel <= 2) {
- Warn=warnLevel;
- return 1;
- } else { return 0; }
-}
-
-Bool_t ntupleXML::SetTruthPreference(UInt_t truthPreference) {
- if (truthPreference <= 2) {
- truthPref=truthPreference;
- return 1;
- } else { return 0; }
-}
-
-Bool_t ntupleXML::SetFilenameAppend(UInt_t filenameAppend) {
- if (filenameAppend <= 2) {
- Append=filenameAppend;
- return 1;
- } else { return 0; }
-}
-
-Int_t ntupleXML::GetNentries(UInt_t fileNumber) {
- if (fileNumber >= fileStore.size()) {
- if (Warn>0) { std::cout << "\nntupleXML: Error cannot access file #" << fileNumber
- << ", " << fileStore.size() << " file(s) currently loaded. ";
- }
- return 0;
- } else {
- ntupleXML::SetActiveFile(fileNumber);
- return activeTree->GetEntries();
- }
-}
-
-void ntupleXML::Add(Char_t* fileLocation) {
- TChain* tf;
- if (isTopView) {
- tf = new TChain("FullReco0");
- tf->Add(fileLocation);
- tf->AddFriend("FullRecoAna0");
- tf->AddFriend("TruthAna0");
- tf->AddFriend("TruthAll0");
- tf->AddFriend("Truth0");
- if ( tf->LoadTree(0) < 0 ) {
- if (Warn>0) { std::cout << "\nntupleXML: Error, file was not added. "; }
- return;
- }
- } else {
- tf = new TChain("CollectionTree");
- tf->Add(fileLocation);
- if ( tf->LoadTree(0) < 0 ) {
- if (Warn>0) { std::cout << "\nntupleXML: Error, file was not added. "; }
- return;
- }
-
- }
- fileStore.push_back(tf);
-}
-
-void ntupleXML::Clear(void) {
- for (UInt_t i=0; i<fileStore.size(); i++) {
- delete fileStore[i];
- }
- fileStore.clear();
- activeFile = NULL;
-}
-
-//XML File Construction Members//
-
-void ntupleXML::StartXML(void) {
- //Create XML engine
- TVXMLEng = new TXMLEngine();
- event = TVXMLEng->NewChild(0, 0, "Event");
- TVXMLEng->NewAttr(event, 0, "version", "ntuple");
- TVXMLEng->NewIntAttr(event, "runNumber", FR_runNumber);
- TVXMLEng->NewIntAttr(event, "eventNumber", FR_eventNumber);
- TDatime* makeTime = new TDatime();
- Char_t makeTimeStr[26];
- makeTime->AsString(makeTimeStr); //This 'AsString' is member of TDatime
- delete makeTime;
- TVXMLEng->NewAttr(event, 0, "dateTime", makeTimeStr);
-}
-
-void ntupleXML::FillXML_ParticleDump(Char_t* nodeName, Char_t* storeGateKey) {
- //Create Composite particle subnode
- XMLNodePointer_t compPart = TVXMLEng->NewChild(event, 0, nodeName);
- TVXMLEng->NewIntAttr(compPart, "count", nParticles);
- TVXMLEng->NewAttr(compPart, 0, "storeGateKey", storeGateKey);
- TVXMLEng->NewChild(compPart, 0, "dataType", dataTypeCon.c_str());
- TVXMLEng->NewChild(compPart, 0, "eta", etaCon.c_str());
- TVXMLEng->NewChild(compPart, 0, "label", labelCon.c_str());
- TVXMLEng->NewChild(compPart, 0, "pdgId", pdgIdCon.c_str());
- TVXMLEng->NewChild(compPart, 0, "phi", phiCon.c_str());
- TVXMLEng->NewChild(compPart, 0, "pt", ptCon.c_str());
- TVXMLEng->NewChild(compPart, 0, "typeEV", typeEVCon.c_str());
- dataTypeCon=""; etaCon=""; phiCon=""; labelCon=""; pdgIdCon=""; ptCon=""; typeEVCon="";
- nParticles=0;
-}
-
-void ntupleXML::FillXML_TruthDump(Char_t* nodeName, Char_t* storeGateKey) {
- //Create truth subnode
- XMLNodePointer_t truBlock = TVXMLEng->NewChild(event, 0, nodeName);
- TVXMLEng->NewIntAttr(truBlock, "count", nParticles);
- TVXMLEng->NewAttr(truBlock, 0, "storeGateKey", storeGateKey);
- TVXMLEng->NewChild(truBlock, 0, "code", pdgIdCon.c_str());
- TVXMLEng->NewChild(truBlock, 0, "eta", etaCon.c_str());
- TVXMLEng->NewChild(truBlock, 0, "id", labelCon.c_str());
- TVXMLEng->NewChild(truBlock, 0, "phi", phiCon.c_str());
- TVXMLEng->NewChild(truBlock, 0, "phiVertex", dataTypeCon.c_str());
- TVXMLEng->NewChild(truBlock, 0, "pt", ptCon.c_str());
- TVXMLEng->NewChild(truBlock, 0, "rhoVertex", dataTypeCon.c_str());
- TVXMLEng->NewChild(truBlock, 0, "zVertex", dataTypeCon.c_str());
- dataTypeCon=""; etaCon=""; phiCon=""; labelCon=""; pdgIdCon=""; ptCon="";
- nParticles=0;
-}
-
-void ntupleXML::FillXML_MET(Char_t* storeGateKey) {
- //Create MET subnode
- XMLNodePointer_t MET = TVXMLEng->NewChild(event, 0, "ETMis");
- TVXMLEng->NewIntAttr(MET, "count", 1);
- TVXMLEng->NewAttr(MET, 0, "storeGateKey", storeGateKey);
- TVXMLEng->NewChild(MET, 0, "et", etaCon.c_str());
- TVXMLEng->NewChild(MET, 0, "etx", phiCon.c_str());
- TVXMLEng->NewChild(MET, 0, "ety", ptCon.c_str());
- etaCon=""; phiCon=""; ptCon="";
-}
-
-void ntupleXML::EndXML(Char_t* outputFilename) {
- //Create document
- XMLDocPointer_t xmldoc = TVXMLEng->NewDoc();
- TVXMLEng->DocSetRootElement(xmldoc, event);
- TVXMLEng->AddDocRawLine(xmldoc, "<?ATLAS Release: \"RELEASE#\"?>");
- TVXMLEng->AddDocRawLine(xmldoc, "<!DOCTYPE Event SYSTEM \"event.dtd\">");
- // Save document to file
- TVXMLEng->SaveDoc(xmldoc, outputFilename);
- // Release memory before exit
- TVXMLEng->FreeDoc(xmldoc);
- delete TVXMLEng;
-}
-
-//String Filling Members//
-
-void ntupleXML::GetFullReco(void) {
- std::string id;
- if (isTopView) { id = "FR_"; }
- else { id = "EV_"; }
- for (Int_t i=0; i<FR_El_N; i++) {
- nParticles++;
- dataTypeCon += "1 ";
- typeEVCon += "EVElectron ";
- labelCon += id + "Electron ";
- etaCon += asString(FR_El_eta->at(i)) + " ";
- phiCon += asString(FR_El_phi->at(i)) + " ";
- ptCon += asString(FR_El_p_T->at(i)/1000.) + " ";
- pdgIdCon += asString((Int_t)FR_El_pdgId->at(i)) + " ";
- }
- for (Int_t i=0; i<FR_Mu_N; i++) {
- nParticles++;
- dataTypeCon += "1 ";
- typeEVCon += "EVMuon ";
- labelCon += id + "Muon ";
- etaCon += asString(FR_Mu_eta->at(i)) + " ";
- phiCon += asString(FR_Mu_phi->at(i)) + " ";
- ptCon += asString(FR_Mu_p_T->at(i)/1000.) + " ";
- pdgIdCon += asString((Int_t)FR_Mu_pdgId->at(i)) + " ";
- }
- for (Int_t i=0; i<FR_Tau_N; i++) {
- nParticles++;
- dataTypeCon += "1 ";
- typeEVCon += "EVTauJet ";
- labelCon += id + "Tau ";
- etaCon += asString(FR_Tau_eta->at(i)) + " ";
- phiCon += asString(FR_Tau_phi->at(i)) + " ";
- ptCon += asString(FR_Tau_p_T->at(i)/1000.) + " ";
- pdgIdCon += asString((Int_t)FR_Tau_pdgId->at(i)) + " ";
- }
- for (Int_t i=0; i<FR_Ph_N; i++) {
- nParticles++;
- dataTypeCon += "1 ";
- typeEVCon += "EVPhoton ";
- labelCon += id + "Photon ";
- etaCon += asString(FR_Ph_eta->at(i)) + " ";
- phiCon += asString(FR_Ph_phi->at(i)) + " ";
- ptCon += asString(FR_Ph_p_T->at(i)/1000.) + " ";
- pdgIdCon += asString((Int_t)FR_Ph_pdgId->at(i)) + " ";
- }
- for (Int_t i=0; i<FR_PJet_N; i++) {
- if (isTopView) {
- if (FR_PJet_BTagged->at(i)) {
- typeEVCon += "EVBJet ";
- labelCon += id + "BTaggedJet ";
- pdgIdCon += "5 ";
- } else {
- typeEVCon += "EVParticleJet ";
- labelCon += id + "ParticleJet ";
- pdgIdCon += "0 ";
- }
- } else {
- typeEVCon += "EVParticleJet ";
- labelCon += id + "ParticleJet ";
- pdgIdCon += "5 ";
- }
- nParticles++;
- dataTypeCon += "1 ";
- etaCon += asString(FR_PJet_eta->at(i)) + " ";
- phiCon += asString(FR_PJet_phi->at(i)) + " ";
- ptCon += asString(FR_PJet_p_T->at(i)/1000.) + " ";
- }
-}
-
-void ntupleXML::GetMET(Bool_t getTruth) {
- if (!getTruth) {
- etaCon += asString(FR_MET_Final_et/1000.) + " ";
- phiCon += asString(FR_MET_Final_ex/1000.) + " ";
- ptCon += asString(FR_MET_Final_ey/1000.) + " ";
- } else {
- etaCon += asString(TR_MET_Truth_et/1000.) + " ";
- phiCon += asString(TR_MET_Truth_ex/1000.) + " ";
- ptCon += asString(TR_MET_Truth_ey/1000.) + " ";
- }
-}
-
-void ntupleXML::GetFullRecoAna(void) {
- for (Int_t i=0; i<FRA_El_N; i++) {
- nParticles++;
- dataTypeCon += "1 ";
- typeEVCon += "EVElectron ";
- labelCon += "FRA_Electron ";
- etaCon += asString(FRA_El_eta->at(i)) + " ";
- phiCon += asString(FRA_El_phi->at(i)) + " ";
- ptCon += asString(FRA_El_p_T->at(i)/1000.) + " ";
- pdgIdCon += asString((Int_t)FRA_El_pdgId->at(i)) + " ";
- }
- for (Int_t i=0; i<FRA_Mu_N; i++) {
- nParticles++;
- dataTypeCon += "1 ";
- typeEVCon += "EVMuon ";
- labelCon += "FRA_Muon ";
- etaCon += asString(FRA_Mu_eta->at(i)) + " ";
- phiCon += asString(FRA_Mu_phi->at(i)) + " ";
- ptCon += asString(FRA_Mu_p_T->at(i)/1000.) + " ";
- pdgIdCon += asString((Int_t)FRA_Mu_pdgId->at(i)) + " ";
- }
- for (Int_t i=0; i<FRA_Nu_N; i++) {
- nParticles++;
- dataTypeCon += "1 ";
- typeEVCon += "EVNeutrino ";
- labelCon += "FRA_Neutrino ";
- etaCon += asString(FRA_Nu_eta->at(i)) + " ";
- phiCon += asString(FRA_Nu_phi->at(i)) + " ";
- ptCon += asString(FRA_Nu_p_T->at(i)/1000.) + " ";
- pdgIdCon += asString((Int_t)FRA_Nu_pdgId->at(i)) + " ";
- }
- for (Int_t i=0; i<FRA_HadW_N; i++) {
- nParticles++;
- dataTypeCon += "0 ";
- typeEVCon += "EVCompositeParticle ";
- labelCon += "FRA_HadronicW ";
- etaCon += asString(FRA_HadW_eta->at(i)) + " ";
- phiCon += asString(FRA_HadW_phi->at(i)) + " ";
- ptCon += asString(FRA_HadW_p_T->at(i)/1000.) + " ";
- pdgIdCon += asString((Int_t)FRA_HadW_pdgId->at(i)) + " ";
- }
- for (Int_t i=0; i<FRA_LepW_N; i++) {
- nParticles++;
- dataTypeCon += "0 ";
- typeEVCon += "EVCompositeParticle ";
- labelCon += "FRA_LeptonicW ";
- etaCon += asString(FRA_LepW_eta->at(i)) + " ";
- phiCon += asString(FRA_LepW_phi->at(i)) + " ";
- ptCon += asString(FRA_LepW_p_T->at(i)/1000.) + " ";
- pdgIdCon += asString((Int_t)FRA_LepW_pdgId->at(i)) + " ";
- }
- for (Int_t i=0; i<FRA_HadTop_N; i++) {
- nParticles++;
- dataTypeCon += "0 ";
- typeEVCon += "EVCompositeParticle ";
- labelCon += "FRA_HadronicTop ";
- etaCon += asString(FRA_HadTop_eta->at(i)) + " ";
- phiCon += asString(FRA_HadTop_phi->at(i)) + " ";
- ptCon += asString(FRA_HadTop_p_T->at(i)/1000.) + " ";
- pdgIdCon += asString((Int_t)FRA_HadTop_pdgId->at(i)) + " ";
- }
- for (Int_t i=0; i<FRA_LepTop_N; i++) {
- nParticles++;
- dataTypeCon += "0 ";
- typeEVCon += "EVCompositeParticle ";
- labelCon += "FRA_LeptonicTop ";
- etaCon += asString(FRA_LepTop_eta->at(i)) + " ";
- phiCon += asString(FRA_LepTop_phi->at(i)) + " ";
- ptCon += asString(FRA_LepTop_p_T->at(i)/1000.) + " ";
- pdgIdCon += asString((Int_t)FRA_LepTop_pdgId->at(i)) + " ";
- }
- for (Int_t i=0; i<FRA_Lepb_N; i++) {
- nParticles++;
- dataTypeCon += "1 ";
- typeEVCon += "EVBJet ";
- labelCon += "FRA_LeptonicBJet ";
- etaCon += asString(FRA_Lepb_eta->at(i)) + " ";
- phiCon += asString(FRA_Lepb_phi->at(i)) + " ";
- ptCon += asString(FRA_Lepb_p_T->at(i)/1000.) + " ";
- pdgIdCon += "5 ";
- }
- for (Int_t i=0; i<FRA_Hadb_N; i++) {
- nParticles++;
- dataTypeCon += "1 ";
- typeEVCon += "EVBJet ";
- labelCon += "FRA_HadronicBJet ";
- etaCon += asString(FRA_Hadb_eta->at(i)) + " ";
- phiCon += asString(FRA_Hadb_phi->at(i)) + " ";
- ptCon += asString(FRA_Hadb_p_T->at(i)/1000.) + " ";
- pdgIdCon += "5 ";
- }
- for (Int_t i=0; i<FRA_Hadj_N; i++) {
- nParticles++;
- dataTypeCon += "1 ";
- typeEVCon += "EVParticleJet ";
- labelCon += "FRA_HadronicParticleJet ";
- etaCon += asString(FRA_Hadj_eta->at(i)) + " ";
- phiCon += asString(FRA_Hadj_phi->at(i)) + " ";
- ptCon += asString(FRA_Hadj_p_T->at(i)/1000.) + " ";
- pdgIdCon += "0 ";
- }
-}
-
-//onlyMouns is set true when filling SMTr
-void ntupleXML::GetTruthAna(Bool_t onlyMuons) {
- Int_t sign;
- for (Int_t i=0; i<TRA_Mu_N; i++) {
- nParticles++;
- etaCon += asString(TRA_Mu_eta->at(i)) + " ";
- phiCon += asString(TRA_Mu_phi->at(i)) + " ";
- ptCon += asString(TRA_Mu_p_T->at(i)/1000.) + " ";
- pdgIdCon += asString((Int_t)TRA_Mu_pdgId->at(i)) + " ";
- labelCon += "0 "; //Barcode
- dataTypeCon += "0.000001 "; //Used to fill vertexes
- }
-
- if (onlyMuons) { return; }
-
- for (Int_t i=0; i<TRA_El_N; i++) {
- nParticles++;
- etaCon += asString(TRA_El_eta->at(i)) + " ";
- phiCon += asString(TRA_El_phi->at(i)) + " ";
- ptCon += asString(TRA_El_p_T->at(i)/1000.) + " ";
- pdgIdCon += asString((Int_t)TRA_El_pdgId->at(i)) + " ";
- labelCon += "0 ";
- dataTypeCon += " 0.000001 ";
- }
- for (Int_t i=0; i<TRA_Tau_N; i++) {
- nParticles++;
- etaCon += asString(TRA_Tau_eta->at(i)) + " ";
- phiCon += asString(TRA_Tau_phi->at(i)) + " ";
- ptCon += asString(TRA_Tau_p_T->at(i)/1000.) + " ";
- pdgIdCon += asString((Int_t)TRA_Tau_pdgId->at(i)) + " ";
- labelCon += "0 ";
- dataTypeCon += "0.000001 ";
- }
- for (Int_t i=0; i<TRA_HadW_N; i++) {
- nParticles++;
- etaCon += asString(TRA_HadW_eta->at(i)) + " ";
- phiCon += asString(TRA_HadW_phi->at(i)) + " ";
- ptCon += asString(TRA_HadW_p_T->at(i)/1000.) + " ";
- pdgIdCon += asString((Int_t)TRA_HadW_pdgId->at(i)) + " ";
- labelCon += "0 ";
- dataTypeCon += "0.000001 ";
- }
- for (Int_t i=0; i<TRA_LepW_N; i++) {
- nParticles++;
- etaCon += asString(TRA_LepW_eta->at(i)) + " ";
- phiCon += asString(TRA_LepW_phi->at(i)) + " ";
- ptCon += asString(TRA_LepW_p_T->at(i)/1000.) + " ";
- pdgIdCon += asString((Int_t)TRA_LepW_pdgId->at(i)) + " ";
- labelCon += "0 ";
- dataTypeCon += "0.000001 ";
- }
- for (Int_t i=0; i<TRA_HadTop_N; i++) {
- nParticles++;
- etaCon += asString(TRA_HadTop_eta->at(i)) + " ";
- phiCon += asString(TRA_HadTop_phi->at(i)) + " ";
- ptCon += asString(TRA_HadTop_p_T->at(i)/1000.) + " ";
- sign = (Int_t) (fabs(TRA_HadTop_pdgId->at(i))/TRA_HadTop_pdgId->at(i));
- pdgIdCon += asString((Int_t)(TRA_HadTop_pdgId->at(i)+(600*sign))) + " ";
- labelCon += "0 ";
- dataTypeCon += "0.000001 ";
- }
- for (Int_t i=0; i<TRA_LepTop_N; i++) {
- nParticles++;
- etaCon += asString(TRA_LepTop_eta->at(i)) + " ";
- phiCon += asString(TRA_LepTop_phi->at(i)) + " ";
- ptCon += asString(TRA_LepTop_p_T->at(i)/1000.) + " ";
- sign = (Int_t) (fabs(TRA_LepTop_pdgId->at(i))/TRA_LepTop_pdgId->at(i));
- pdgIdCon += asString((Int_t)(TRA_LepTop_pdgId->at(i)+(600*sign))) + " ";
- labelCon += "0 ";
- dataTypeCon += "0.000001 ";
- }
- for (Int_t i=0; i<TRA_Bot_N; i++) {
- nParticles++;
- etaCon += asString(TRA_Bot_eta->at(i)) + " ";
- phiCon += asString(TRA_Bot_phi->at(i)) + " ";
- ptCon += asString(TRA_Bot_p_T->at(i)/1000.) + " ";
- sign = (Int_t) (fabs(TRA_Bot_pdgId->at(i))/TRA_Bot_pdgId->at(i));
- pdgIdCon += asString((Int_t)(TRA_Bot_pdgId->at(i)+(600*sign))) + " ";
- labelCon += "0 ";
- dataTypeCon += "0.000001 ";
- }
- for (Int_t i=0; i<TRA_LQ_N; i++) { //LQ - Light Quarks
- nParticles++;
- etaCon += asString(TRA_LQ_eta->at(i)) + " ";
- phiCon += asString(TRA_LQ_phi->at(i)) + " ";
- ptCon += asString(TRA_LQ_p_T->at(i)/1000.) + " ";
- sign = (Int_t) (fabs(TRA_LQ_pdgId->at(i))/TRA_LQ_pdgId->at(i));
- pdgIdCon += asString((Int_t)(TRA_LQ_pdgId->at(i)+(600*sign))) + " ";
- labelCon += "0 ";
- dataTypeCon += "0.000001 ";
- }
-}
-
-void ntupleXML::GetTruthAll(Bool_t onlyMuons) {
- //Loop over entire truth block (if present)
- Int_t id, sign;
- for (UInt_t i=0; i<TA_Tru_p_T->size(); i++) {
- if (!onlyMuons || (onlyMuons && fabs(TA_Tru_pdgId->at(i)) == 13)) {
- nParticles++;
- etaCon += asString(TA_Tru_eta->at(i)) + " ";
- phiCon += asString(TA_Tru_phi->at(i)) + " ";
- ptCon += asString(TA_Tru_p_T->at(i)/1000.) + " ";
- id = (Int_t) TA_Tru_pdgId->at(i);
- sign = (Int_t) (fabs(TA_Tru_pdgId->at(i))/TA_Tru_pdgId->at(i));
- //Atlantis' True Particle Simulation ignores quarks, however with TopView
- //we are interested in t and b quarks, 6 special pdgIds have therefore
- //been set up in Atlantis (601-606) so as to display quarks from ntuples
- if (abs(id) <= 6) { id += (600 * sign); }
- pdgIdCon += asString(id) + " ";
- labelCon += asString(TA_Tru_barcode->at(i)) + " ";
- dataTypeCon += "0.000001 "; //If zero, Atlantis crashes on eta-phi plot due to rhoVertex
- }
- }
-}
-
-//Branch Association//
-
-void ntupleXML::SetBranches(void) {
- FR_El_pdgId = 0;
- FR_El_p_T = 0;
- FR_El_phi = 0;
- FR_El_eta = 0;
- FR_Mu_pdgId = 0;
- FR_Mu_p_T = 0;
- FR_Mu_phi = 0;
- FR_Mu_eta = 0;
- FR_Tau_pdgId = 0;
- FR_Tau_p_T = 0;
- FR_Tau_phi = 0;
- FR_Tau_eta = 0;
- FR_Ph_pdgId = 0;
- FR_Ph_p_T = 0;
- FR_Ph_phi = 0;
- FR_Ph_eta = 0;
- FR_PJet_pdgId = 0;
- FR_PJet_p_T = 0;
- FR_PJet_phi = 0;
- FR_PJet_eta = 0;
- FR_PJet_BTagged = 0;
- FRA_El_pdgId = 0;
- FRA_El_p_T = 0;
- FRA_El_phi = 0;
- FRA_El_eta = 0;
- FRA_Mu_pdgId = 0;
- FRA_Mu_p_T = 0;
- FRA_Mu_phi = 0;
- FRA_Mu_eta = 0;
- FRA_Nu_pdgId = 0;
- FRA_Nu_p_T = 0;
- FRA_Nu_phi = 0;
- FRA_Nu_eta = 0;
- FRA_HadW_pdgId = 0;
- FRA_HadW_p_T = 0;
- FRA_HadW_phi = 0;
- FRA_HadW_eta = 0;
- FRA_LepW_pdgId = 0;
- FRA_LepW_p_T = 0;
- FRA_LepW_phi = 0;
- FRA_LepW_eta = 0;
- FRA_HadTop_pdgId = 0;
- FRA_HadTop_p_T = 0;
- FRA_HadTop_phi = 0;
- FRA_HadTop_eta = 0;
- FRA_LepTop_pdgId = 0;
- FRA_LepTop_p_T = 0;
- FRA_LepTop_phi = 0;
- FRA_LepTop_eta = 0;
- FRA_Lepb_pdgId = 0;
- FRA_Lepb_p_T = 0;
- FRA_Lepb_phi = 0;
- FRA_Lepb_eta = 0;
- FRA_Hadb_pdgId = 0;
- FRA_Hadb_p_T = 0;
- FRA_Hadb_phi = 0;
- FRA_Hadb_eta = 0;
- FRA_Hadj_pdgId = 0;
- FRA_Hadj_p_T = 0;
- FRA_Hadj_phi = 0;
- FRA_Hadj_eta = 0;
- TRA_El_pdgId = 0;
- TRA_El_p_T = 0;
- TRA_El_phi = 0;
- TRA_El_eta = 0;
- TRA_Mu_pdgId = 0;
- TRA_Mu_p_T = 0;
- TRA_Mu_phi = 0;
- TRA_Mu_eta = 0;
- TRA_Tau_pdgId = 0;
- TRA_Tau_p_T = 0;
- TRA_Tau_phi = 0;
- TRA_Tau_eta = 0;
- TRA_HadW_pdgId = 0;
- TRA_HadW_p_T = 0;
- TRA_HadW_phi = 0;
- TRA_HadW_eta = 0;
- TRA_LepW_pdgId = 0;
- TRA_LepW_p_T = 0;
- TRA_LepW_phi = 0;
- TRA_LepW_eta = 0;
- TRA_HadTop_pdgId = 0;
- TRA_HadTop_p_T = 0;
- TRA_HadTop_phi = 0;
- TRA_HadTop_eta = 0;
- TRA_LepTop_pdgId = 0;
- TRA_LepTop_p_T = 0;
- TRA_LepTop_phi = 0;
- TRA_LepTop_eta = 0;
- TRA_Bot_pdgId = 0;
- TRA_Bot_p_T = 0;
- TRA_Bot_phi = 0;
- TRA_Bot_eta = 0;
- TRA_LQ_pdgId = 0;
- TRA_LQ_p_T = 0;
- TRA_LQ_phi = 0;
- TRA_LQ_eta = 0;
- TA_Tru_p_T = 0;
- TA_Tru_phi = 0;
- TA_Tru_eta = 0;
- TA_Tru_pdgId = 0;
- TA_Tru_barcode = 0;
- FR_Active=0;
- TR_Active=0;
- FRA_Active=0;
- TRA_Active=0;
- TA_Active=0;
-
- activeTree = activeFile->GetTree();
-
- if (activeTree) {
- FR_Active = 1;
- activeTree->SetBranchAddress("eventNumber", &FR_eventNumber, &b_FR_eventNumber);
- activeTree->SetBranchAddress("runNumber", &FR_runNumber, &b_FR_runNumber);
- activeTree->SetBranchAddress("MET_Final_ex", &FR_MET_Final_ex, &b_FR_MET_Final_ex);
- activeTree->SetBranchAddress("MET_Final_ey", &FR_MET_Final_ey, &b_FR_MET_Final_ey);
- activeTree->SetBranchAddress("MET_Final_et", &FR_MET_Final_et, &b_FR_MET_Final_et);
- if (!isTopView) {
- //With EventView ntuples, MET Truth is in the CollectionTree
- activeTree->SetBranchAddress("MET_Truth_ex", &TR_MET_Truth_ex, &b_TR_MET_Truth_ex);
- activeTree->SetBranchAddress("MET_Truth_ey", &TR_MET_Truth_ey, &b_TR_MET_Truth_ey);
- activeTree->SetBranchAddress("MET_Truth_et", &TR_MET_Truth_et, &b_TR_MET_Truth_et);
- TR_Active=1;
- }
- activeTree->SetBranchAddress("El_N", &FR_El_N, &b_FR_El_N);
- activeTree->SetBranchAddress("El_p_T", &FR_El_p_T, &b_FR_El_p_T);
- activeTree->SetBranchAddress("El_pdgId", &FR_El_pdgId, &b_FR_El_pdgId);
- activeTree->SetBranchAddress("El_phi", &FR_El_phi, &b_FR_El_phi);
- activeTree->SetBranchAddress("El_eta", &FR_El_eta, &b_FR_El_eta);
- activeTree->SetBranchAddress("Mu_N", &FR_Mu_N, &b_FR_Mu_N);
- activeTree->SetBranchAddress("Mu_p_T", &FR_Mu_p_T, &b_FR_Mu_p_T);
- activeTree->SetBranchAddress("Mu_pdgId", &FR_Mu_pdgId, &b_FR_Mu_pdgId);
- activeTree->SetBranchAddress("Mu_phi", &FR_Mu_phi, &b_FR_Mu_phi);
- activeTree->SetBranchAddress("Mu_eta", &FR_Mu_eta, &b_FR_Mu_eta);
- activeTree->SetBranchAddress("Tau_N", &FR_Tau_N, &b_FR_Tau_N);
- activeTree->SetBranchAddress("Tau_p_T", &FR_Tau_p_T, &b_FR_Tau_p_T);
- activeTree->SetBranchAddress("Tau_pdgId", &FR_Tau_pdgId, &b_FR_Tau_pdgId);
- activeTree->SetBranchAddress("Tau_phi", &FR_Tau_phi, &b_FR_Tau_phi);
- activeTree->SetBranchAddress("Tau_eta", &FR_Tau_eta, &b_FR_Tau_eta);
- activeTree->SetBranchAddress("Ph_N", &FR_Ph_N, &b_FR_Ph_N);
- activeTree->SetBranchAddress("Ph_p_T", &FR_Ph_p_T, &b_FR_Ph_p_T);
- activeTree->SetBranchAddress("Ph_pdgId", &FR_Ph_pdgId, &b_FR_Ph_pdgId);
- activeTree->SetBranchAddress("Ph_phi", &FR_Ph_phi, &b_FR_Ph_phi);
- activeTree->SetBranchAddress("Ph_eta", &FR_Ph_eta, &b_FR_Ph_eta);
- activeTree->SetBranchAddress("PJet_N", &FR_PJet_N, &b_FR_PJet_N);
- activeTree->SetBranchAddress("PJet_p_T", &FR_PJet_p_T, &b_FR_PJet_p_T);
- activeTree->SetBranchAddress("PJet_pdgId", &FR_PJet_pdgId, &b_FR_PJet_pdgId);
- activeTree->SetBranchAddress("PJet_phi", &FR_PJet_phi, &b_FR_PJet_phi);
- activeTree->SetBranchAddress("PJet_eta", &FR_PJet_eta, &b_FR_PJet_eta);
- if (isTopView) { activeTree->SetBranchAddress("PJet_BTagged", &FR_PJet_BTagged, &b_FR_PJet_BTagged); }
- } else if (Warn>1) { std::cout << "\nntupleXML: Warning cannot find " << mainTreeName << " tree. "; }
-
- //Stop here with EventView
- if (!isTopView) { return; }
-
- friendTree = (TFriendElement*) (activeFile->GetListOfFriends()->FindObject("FullRecoAna0"));
- activeTree = friendTree->GetTree();
- if (activeTree) {
- FRA_Active=1;
- activeTree->SetBranchAddress("El_N", &FRA_El_N, &b_FRA_El_N);
- activeTree->SetBranchAddress("El_p_T", &FRA_El_p_T, &b_FRA_El_p_T);
- activeTree->SetBranchAddress("El_pdgId", &FRA_El_pdgId, &b_FRA_El_pdgId);
- activeTree->SetBranchAddress("El_phi", &FRA_El_phi, &b_FRA_El_phi);
- activeTree->SetBranchAddress("El_eta", &FRA_El_eta, &b_FRA_El_eta);
- activeTree->SetBranchAddress("Mu_N", &FRA_Mu_N, &b_FRA_Mu_N);
- activeTree->SetBranchAddress("Mu_p_T", &FRA_Mu_p_T, &b_FRA_Mu_p_T);
- activeTree->SetBranchAddress("Mu_pdgId", &FRA_Mu_pdgId, &b_FRA_Mu_pdgId);
- activeTree->SetBranchAddress("Mu_phi", &FRA_Mu_phi, &b_FRA_Mu_phi);
- activeTree->SetBranchAddress("Mu_eta", &FRA_Mu_eta, &b_FRA_Mu_eta);
- activeTree->SetBranchAddress("Nu_N", &FRA_Nu_N, &b_FRA_Nu_N);
- activeTree->SetBranchAddress("Nu_p_T", &FRA_Nu_p_T, &b_FRA_Nu_p_T);
- activeTree->SetBranchAddress("Nu_pdgId", &FRA_Nu_pdgId, &b_FRA_Nu_pdgId);
- activeTree->SetBranchAddress("Nu_phi", &FRA_Nu_phi, &b_FRA_Nu_phi);
- activeTree->SetBranchAddress("Nu_eta", &FRA_Nu_eta, &b_FRA_Nu_eta);
- activeTree->SetBranchAddress("HadW_N", &FRA_HadW_N, &b_FRA_HadW_N);
- activeTree->SetBranchAddress("HadW_p_T", &FRA_HadW_p_T, &b_FRA_HadW_p_T);
- activeTree->SetBranchAddress("HadW_pdgId", &FRA_HadW_pdgId, &b_FRA_HadW_pdgId);
- activeTree->SetBranchAddress("HadW_phi", &FRA_HadW_phi, &b_FRA_HadW_phi);
- activeTree->SetBranchAddress("HadW_eta", &FRA_HadW_eta, &b_FRA_HadW_eta);
- activeTree->SetBranchAddress("LepW_N", &FRA_LepW_N, &b_FRA_LepW_N);
- activeTree->SetBranchAddress("LepW_p_T", &FRA_LepW_p_T, &b_FRA_LepW_p_T);
- activeTree->SetBranchAddress("LepW_pdgId", &FRA_LepW_pdgId, &b_FRA_LepW_pdgId);
- activeTree->SetBranchAddress("LepW_phi", &FRA_LepW_phi, &b_FRA_LepW_phi);
- activeTree->SetBranchAddress("LepW_eta", &FRA_LepW_eta, &b_FRA_LepW_eta);
- activeTree->SetBranchAddress("HadTop_N", &FRA_HadTop_N, &b_FRA_HadTop_N);
- activeTree->SetBranchAddress("HadTop_p_T", &FRA_HadTop_p_T, &b_FRA_HadTop_p_T);
- activeTree->SetBranchAddress("HadTop_pdgId", &FRA_HadTop_pdgId, &b_FRA_HadTop_pdgId);
- activeTree->SetBranchAddress("HadTop_phi", &FRA_HadTop_phi, &b_FRA_HadTop_phi);
- activeTree->SetBranchAddress("HadTop_eta", &FRA_HadTop_eta, &b_FRA_HadTop_eta);
- activeTree->SetBranchAddress("LepTop_N", &FRA_LepTop_N, &b_FRA_LepTop_N);
- activeTree->SetBranchAddress("LepTop_p_T", &FRA_LepTop_p_T, &b_FRA_LepTop_p_T);
- activeTree->SetBranchAddress("LepTop_pdgId", &FRA_LepTop_pdgId, &b_FRA_LepTop_pdgId);
- activeTree->SetBranchAddress("LepTop_phi", &FRA_LepTop_phi, &b_FRA_LepTop_phi);
- activeTree->SetBranchAddress("LepTop_eta", &FRA_LepTop_eta, &b_FRA_LepTop_eta);
- activeTree->SetBranchAddress("Lepb_N", &FRA_Lepb_N, &b_FRA_Lepb_N);
- activeTree->SetBranchAddress("Lepb_p_T", &FRA_Lepb_p_T, &b_FRA_Lepb_p_T);
- activeTree->SetBranchAddress("Lepb_pdgId", &FRA_Lepb_pdgId, &b_FRA_Lepb_pdgId);
- activeTree->SetBranchAddress("Lepb_phi", &FRA_Lepb_phi, &b_FRA_Lepb_phi);
- activeTree->SetBranchAddress("Lepb_eta", &FRA_Lepb_eta, &b_FRA_Lepb_eta);
- activeTree->SetBranchAddress("Hadb_N", &FRA_Hadb_N, &b_FRA_Hadb_N);
- activeTree->SetBranchAddress("Hadb_p_T", &FRA_Hadb_p_T, &b_FRA_Hadb_p_T);
- activeTree->SetBranchAddress("Hadb_pdgId", &FRA_Hadb_pdgId, &b_FRA_Hadb_pdgId);
- activeTree->SetBranchAddress("Hadb_phi", &FRA_Hadb_phi, &b_FRA_Hadb_phi);
- activeTree->SetBranchAddress("Hadb_eta", &FRA_Hadb_eta, &b_FRA_Hadb_eta);
- activeTree->SetBranchAddress("Hadj_N", &FRA_Hadj_N, &b_FRA_Hadj_N);
- activeTree->SetBranchAddress("Hadj_p_T", &FRA_Hadj_p_T, &b_FRA_Hadj_p_T);
- activeTree->SetBranchAddress("Hadj_pdgId", &FRA_Hadj_pdgId, &b_FRA_Hadj_pdgId);
- activeTree->SetBranchAddress("Hadj_phi", &FRA_Hadj_phi, &b_FRA_Hadj_phi);
- activeTree->SetBranchAddress("Hadj_eta", &FRA_Hadj_eta, &b_FRA_Hadj_eta);
- } else if (Warn>1) { std::cout << "\nntupleXML: Warning, cannot find FullRecoAna tree. "; }
-
- friendTree = (TFriendElement*) (activeFile->GetListOfFriends()->FindObject("TruthAna0"));
- activeTree = friendTree->GetTree();
- if (activeTree) {
- TRA_Active=1;
- activeTree->SetBranchAddress("El_N", &TRA_El_N, &b_TRA_El_N);
- activeTree->SetBranchAddress("El_p_T", &TRA_El_p_T, &b_TRA_El_p_T);
- activeTree->SetBranchAddress("El_pdgId", &TRA_El_pdgId, &b_TRA_El_pdgId);
- activeTree->SetBranchAddress("El_phi", &TRA_El_phi, &b_TRA_El_phi);
- activeTree->SetBranchAddress("El_eta", &TRA_El_eta, &b_TRA_El_eta);
- activeTree->SetBranchAddress("Mu_N", &TRA_Mu_N, &b_TRA_Mu_N);
- activeTree->SetBranchAddress("Mu_p_T", &TRA_Mu_p_T, &b_TRA_Mu_p_T);
- activeTree->SetBranchAddress("Mu_pdgId", &TRA_Mu_pdgId, &b_TRA_Mu_pdgId);
- activeTree->SetBranchAddress("Mu_phi", &TRA_Mu_phi, &b_TRA_Mu_phi);
- activeTree->SetBranchAddress("Mu_eta", &TRA_Mu_eta, &b_TRA_Mu_eta);
- activeTree->SetBranchAddress("Tau_N", &TRA_Tau_N, &b_TRA_Tau_N);
- activeTree->SetBranchAddress("Tau_p_T", &TRA_Tau_p_T, &b_TRA_Tau_p_T);
- activeTree->SetBranchAddress("Tau_pdgId", &TRA_Tau_pdgId, &b_TRA_Tau_pdgId);
- activeTree->SetBranchAddress("Tau_phi", &TRA_Tau_phi, &b_TRA_Tau_phi);
- activeTree->SetBranchAddress("Tau_eta", &TRA_Tau_eta, &b_TRA_Tau_eta);
- activeTree->SetBranchAddress("HadW_N", &TRA_HadW_N, &b_TRA_HadW_N);
- activeTree->SetBranchAddress("HadW_p_T", &TRA_HadW_p_T, &b_TRA_HadW_p_T);
- activeTree->SetBranchAddress("HadW_pdgId", &TRA_HadW_pdgId, &b_TRA_HadW_pdgId);
- activeTree->SetBranchAddress("HadW_phi", &TRA_HadW_phi, &b_TRA_HadW_phi);
- activeTree->SetBranchAddress("HadW_eta", &TRA_HadW_eta, &b_TRA_HadW_eta);
- activeTree->SetBranchAddress("LepW_N", &TRA_LepW_N, &b_TRA_LepW_N);
- activeTree->SetBranchAddress("LepW_p_T", &TRA_LepW_p_T, &b_TRA_LepW_p_T);
- activeTree->SetBranchAddress("LepW_pdgId", &TRA_LepW_pdgId, &b_TRA_LepW_pdgId);
- activeTree->SetBranchAddress("LepW_phi", &TRA_LepW_phi, &b_TRA_LepW_phi);
- activeTree->SetBranchAddress("LepW_eta", &TRA_LepW_eta, &b_TRA_LepW_eta);
- activeTree->SetBranchAddress("HadTop_N", &TRA_HadTop_N, &b_TRA_HadTop_N);
- activeTree->SetBranchAddress("HadTop_p_T", &TRA_HadTop_p_T, &b_TRA_HadTop_p_T);
- activeTree->SetBranchAddress("HadTop_pdgId", &TRA_HadTop_pdgId, &b_TRA_HadTop_pdgId);
- activeTree->SetBranchAddress("HadTop_phi", &TRA_HadTop_phi, &b_TRA_HadTop_phi);
- activeTree->SetBranchAddress("HadTop_eta", &TRA_HadTop_eta, &b_TRA_HadTop_eta);
- activeTree->SetBranchAddress("LepTop_N", &TRA_LepTop_N, &b_TRA_LepTop_N);
- activeTree->SetBranchAddress("LepTop_p_T", &TRA_LepTop_p_T, &b_TRA_LepTop_p_T);
- activeTree->SetBranchAddress("LepTop_pdgId", &TRA_LepTop_pdgId, &b_TRA_LepTop_pdgId);
- activeTree->SetBranchAddress("LepTop_phi", &TRA_LepTop_phi, &b_TRA_LepTop_phi);
- activeTree->SetBranchAddress("LepTop_eta", &TRA_LepTop_eta, &b_TRA_LepTop_eta);
- activeTree->SetBranchAddress("Bot_N", &TRA_Bot_N, &b_TRA_Bot_N);
- activeTree->SetBranchAddress("Bot_p_T", &TRA_Bot_p_T, &b_TRA_Bot_p_T);
- activeTree->SetBranchAddress("Bot_pdgId", &TRA_Bot_pdgId, &b_TRA_Bot_pdgId);
- activeTree->SetBranchAddress("Bot_phi", &TRA_Bot_phi, &b_TRA_Bot_phi);
- activeTree->SetBranchAddress("Bot_eta", &TRA_Bot_eta, &b_TRA_Bot_eta);
- activeTree->SetBranchAddress("LQ_N", &TRA_LQ_N, &b_TRA_LQ_N);
- activeTree->SetBranchAddress("LQ_p_T", &TRA_LQ_p_T, &b_TRA_LQ_p_T);
- activeTree->SetBranchAddress("LQ_pdgId", &TRA_LQ_pdgId, &b_TRA_LQ_pdgId);
- activeTree->SetBranchAddress("LQ_phi", &TRA_LQ_phi, &b_TRA_LQ_phi);
- activeTree->SetBranchAddress("LQ_eta", &TRA_LQ_eta, &b_TRA_LQ_eta);
- } else if (Warn>1) { std::cout << "\nntupleXML: Warning, cannot find TruthAna tree. "; }
-
- friendTree = (TFriendElement*) (activeFile->GetListOfFriends()->FindObject("TruthAll0"));
- activeTree = friendTree->GetTree();
- if (activeTree) {
- TA_Active=1;
- activeTree->SetBranchAddress("Tru_p_T", &TA_Tru_p_T, &b_TA_Tru_p_T);
- activeTree->SetBranchAddress("Tru_phi", &TA_Tru_phi, &b_TA_Tru_phi);
- activeTree->SetBranchAddress("Tru_eta", &TA_Tru_eta, &b_TA_Tru_eta);
- activeTree->SetBranchAddress("Tru_pdgId", &TA_Tru_pdgId, &b_TA_Tru_pdgId);
- activeTree->SetBranchAddress("Tru_barcode", &TA_Tru_barcode, &b_TA_Tru_barcode);
- } else if (Warn>1) { std::cout << "\nntupleXML: Warning, cannot find TruthAll tree. "; }
-
- //If using TopView ntuples, MET_Truth must be fetched from Truth0
- friendTree = (TFriendElement*) (activeFile->GetListOfFriends()->FindObject("Truth0"));
- activeTree = friendTree->GetTree();
- if (activeTree) {
- TR_Active=1;
- activeTree->SetBranchAddress("MET_Truth_ex", &TR_MET_Truth_ex, &b_TR_MET_Truth_ex);
- activeTree->SetBranchAddress("MET_Truth_ey", &TR_MET_Truth_ey, &b_TR_MET_Truth_ey);
- activeTree->SetBranchAddress("MET_Truth_et", &TR_MET_Truth_et, &b_TR_MET_Truth_et);
- } else if (Warn>1) { std::cout << "\nntupleXML: Warning, cannot find Truth tree. "; }
-}
-
-void ntupleXML::FillBranches(Int_t entryNumber) {
- if (FR_Active) {
- b_FR_eventNumber->GetEntry(entryNumber);
- b_FR_runNumber->GetEntry(entryNumber);
- b_FR_MET_Final_ex->GetEntry(entryNumber);
- b_FR_MET_Final_ey->GetEntry(entryNumber);
- b_FR_MET_Final_et->GetEntry(entryNumber);
- if (TR_Active) {
- b_TR_MET_Truth_ex->GetEntry(entryNumber);
- b_TR_MET_Truth_ey->GetEntry(entryNumber);
- b_TR_MET_Truth_et->GetEntry(entryNumber);
- }
- b_FR_El_N->GetEntry(entryNumber);
- b_FR_El_pdgId->GetEntry(entryNumber);
- b_FR_El_p_T->GetEntry(entryNumber);
- b_FR_El_phi->GetEntry(entryNumber);
- b_FR_El_eta->GetEntry(entryNumber);
- b_FR_Mu_N->GetEntry(entryNumber);
- b_FR_Mu_pdgId->GetEntry(entryNumber);
- b_FR_Mu_p_T->GetEntry(entryNumber);
- b_FR_Mu_phi->GetEntry(entryNumber);
- b_FR_Mu_eta->GetEntry(entryNumber);
- b_FR_Tau_N->GetEntry(entryNumber);
- b_FR_Tau_pdgId->GetEntry(entryNumber);
- b_FR_Tau_p_T->GetEntry(entryNumber);
- b_FR_Tau_phi->GetEntry(entryNumber);
- b_FR_Tau_eta->GetEntry(entryNumber);
- b_FR_Ph_N->GetEntry(entryNumber);
- b_FR_Ph_pdgId->GetEntry(entryNumber);
- b_FR_Ph_p_T->GetEntry(entryNumber);
- b_FR_Ph_phi->GetEntry(entryNumber);
- b_FR_Ph_eta->GetEntry(entryNumber);
- b_FR_PJet_N->GetEntry(entryNumber);
- b_FR_PJet_pdgId->GetEntry(entryNumber);
- b_FR_PJet_p_T->GetEntry(entryNumber);
- b_FR_PJet_phi->GetEntry(entryNumber);
- b_FR_PJet_eta->GetEntry(entryNumber);
- }
-
- if (!isTopView) { return; }
-
- if (FR_Active) { b_FR_PJet_BTagged->GetEntry(entryNumber); }
-
- if (FRA_Active) {
- b_FRA_El_N->GetEntry(entryNumber);
- b_FRA_El_pdgId->GetEntry(entryNumber);
- b_FRA_El_p_T->GetEntry(entryNumber);
- b_FRA_El_phi->GetEntry(entryNumber);
- b_FRA_El_eta->GetEntry(entryNumber);
- b_FRA_Mu_N->GetEntry(entryNumber);
- b_FRA_Mu_pdgId->GetEntry(entryNumber);
- b_FRA_Mu_p_T->GetEntry(entryNumber);
- b_FRA_Mu_phi->GetEntry(entryNumber);
- b_FRA_Mu_eta->GetEntry(entryNumber);
- b_FRA_Nu_N->GetEntry(entryNumber);
- b_FRA_Nu_pdgId->GetEntry(entryNumber);
- b_FRA_Nu_p_T->GetEntry(entryNumber);
- b_FRA_Nu_phi->GetEntry(entryNumber);
- b_FRA_Nu_eta->GetEntry(entryNumber);
- b_FRA_HadW_N->GetEntry(entryNumber);
- b_FRA_HadW_pdgId->GetEntry(entryNumber);
- b_FRA_HadW_p_T->GetEntry(entryNumber);
- b_FRA_HadW_phi->GetEntry(entryNumber);
- b_FRA_HadW_eta->GetEntry(entryNumber);
- b_FRA_LepW_N->GetEntry(entryNumber);
- b_FRA_LepW_pdgId->GetEntry(entryNumber);
- b_FRA_LepW_p_T->GetEntry(entryNumber);
- b_FRA_LepW_phi->GetEntry(entryNumber);
- b_FRA_LepW_eta->GetEntry(entryNumber);
- b_FRA_HadTop_N->GetEntry(entryNumber);
- b_FRA_HadTop_pdgId->GetEntry(entryNumber);
- b_FRA_HadTop_p_T->GetEntry(entryNumber);
- b_FRA_HadTop_phi->GetEntry(entryNumber);
- b_FRA_HadTop_eta->GetEntry(entryNumber);
- b_FRA_LepTop_N->GetEntry(entryNumber);
- b_FRA_LepTop_pdgId->GetEntry(entryNumber);
- b_FRA_LepTop_p_T->GetEntry(entryNumber);
- b_FRA_LepTop_phi->GetEntry(entryNumber);
- b_FRA_LepTop_eta->GetEntry(entryNumber);
- b_FRA_Lepb_N->GetEntry(entryNumber);
- b_FRA_Lepb_pdgId->GetEntry(entryNumber);
- b_FRA_Lepb_p_T->GetEntry(entryNumber);
- b_FRA_Lepb_phi->GetEntry(entryNumber);
- b_FRA_Lepb_eta->GetEntry(entryNumber);
- b_FRA_Hadb_N->GetEntry(entryNumber);
- b_FRA_Hadb_pdgId->GetEntry(entryNumber);
- b_FRA_Hadb_p_T->GetEntry(entryNumber);
- b_FRA_Hadb_phi->GetEntry(entryNumber);
- b_FRA_Hadb_eta->GetEntry(entryNumber);
- b_FRA_Hadj_N->GetEntry(entryNumber);
- b_FRA_Hadj_pdgId->GetEntry(entryNumber);
- b_FRA_Hadj_p_T->GetEntry(entryNumber);
- b_FRA_Hadj_phi->GetEntry(entryNumber);
- b_FRA_Hadj_eta->GetEntry(entryNumber);
- }
- if (TRA_Active) {
- b_TRA_El_N->GetEntry(entryNumber);
- b_TRA_El_pdgId->GetEntry(entryNumber);
- b_TRA_El_p_T->GetEntry(entryNumber);
- b_TRA_El_phi->GetEntry(entryNumber);
- b_TRA_El_eta->GetEntry(entryNumber);
- b_TRA_Mu_N->GetEntry(entryNumber);
- b_TRA_Mu_pdgId->GetEntry(entryNumber);
- b_TRA_Mu_p_T->GetEntry(entryNumber);
- b_TRA_Mu_phi->GetEntry(entryNumber);
- b_TRA_Mu_eta->GetEntry(entryNumber);
- b_TRA_Tau_N->GetEntry(entryNumber);
- b_TRA_Tau_pdgId->GetEntry(entryNumber);
- b_TRA_Tau_p_T->GetEntry(entryNumber);
- b_TRA_Tau_phi->GetEntry(entryNumber);
- b_TRA_Tau_eta->GetEntry(entryNumber);
- b_TRA_HadW_N->GetEntry(entryNumber);
- b_TRA_HadW_pdgId->GetEntry(entryNumber);
- b_TRA_HadW_p_T->GetEntry(entryNumber);
- b_TRA_HadW_phi->GetEntry(entryNumber);
- b_TRA_HadW_eta->GetEntry(entryNumber);
- b_TRA_LepW_N->GetEntry(entryNumber);
- b_TRA_LepW_pdgId->GetEntry(entryNumber);
- b_TRA_LepW_p_T->GetEntry(entryNumber);
- b_TRA_LepW_phi->GetEntry(entryNumber);
- b_TRA_LepW_eta->GetEntry(entryNumber);
- b_TRA_HadTop_N->GetEntry(entryNumber);
- b_TRA_HadTop_pdgId->GetEntry(entryNumber);
- b_TRA_HadTop_p_T->GetEntry(entryNumber);
- b_TRA_HadTop_phi->GetEntry(entryNumber);
- b_TRA_HadTop_eta->GetEntry(entryNumber);
- b_TRA_LepTop_N->GetEntry(entryNumber);
- b_TRA_LepTop_pdgId->GetEntry(entryNumber);
- b_TRA_LepTop_p_T->GetEntry(entryNumber);
- b_TRA_LepTop_phi->GetEntry(entryNumber);
- b_TRA_LepTop_eta->GetEntry(entryNumber);
- b_TRA_Bot_N->GetEntry(entryNumber);
- b_TRA_Bot_pdgId->GetEntry(entryNumber);
- b_TRA_Bot_p_T->GetEntry(entryNumber);
- b_TRA_Bot_phi->GetEntry(entryNumber);
- b_TRA_Bot_eta->GetEntry(entryNumber);
- b_TRA_LQ_N->GetEntry(entryNumber);
- b_TRA_LQ_pdgId->GetEntry(entryNumber);
- b_TRA_LQ_p_T->GetEntry(entryNumber);
- b_TRA_LQ_phi->GetEntry(entryNumber);
- b_TRA_LQ_eta->GetEntry(entryNumber);
- }
- if (TA_Active) {
- b_TA_Tru_p_T->GetEntry(entryNumber);
- b_TA_Tru_phi->GetEntry(entryNumber);
- b_TA_Tru_eta->GetEntry(entryNumber);
- b_TA_Tru_pdgId->GetEntry(entryNumber);
- b_TA_Tru_barcode->GetEntry(entryNumber);
- }
-}
-
-void ntupleXML::SetActiveFile(Int_t fileNumber) {
- if (activeFile != fileStore[fileNumber]) {
- activeFile = fileStore[fileNumber];
- if (Warn>1) { std::cout << "\nntupleXML: Setting New Active Tree. "; }
- //Associates branches with their variables
- ntupleXML::SetBranches();
- }
-}
-
-template<typename TYPE>
-std::string ntupleXML::asString(const TYPE& x) {
- std::ostringstream o;
- o << std::setiosflags(ios::fixed);
- if (!(o << x)) {
- if (Warn>0) { std::cout << "\nntupleXML: Error in toString Conversion Function. "; }
- return "ERROR";
- }
- return o.str();
-}
-
diff --git a/graphics/AtlantisJava/share/specificconfig.jnlp b/graphics/AtlantisJava/share/specificconfig.jnlp
deleted file mode 100644
index 46f896703ee..00000000000
--- a/graphics/AtlantisJava/share/specificconfig.jnlp
+++ /dev/null
@@ -1,83 +0,0 @@
-<?xml version="1.0" encoding="utf-8"?>
-<!-- Template JNLP webstart file for Atlantis event display for ATLAS
- with specific configuration file. -->
-<jnlp
- spec="1.0+"
- codebase="@CODEBASE@"
- href="@HREF@">
- <information>
- <title>Atlantis event display for ATLAS</title>
- <vendor>Atlantis team</vendor>
- <homepage href=""/> <!-- should be used from codebase -->
- <description>Atlantis event display for ATLAS</description>
- <!-- <icon href="files/goofy_favicon.ico"/>
- <icon kind="splash" href="files/logo.gif"/> -->
- <offline-allowed/>
- <shortcut online="false">
- <desktop/>
- <menu submenu="Atlantis event display"/>
- </shortcut>
- </information>
- <security>
- <all-permissions/>
- </security>
- <resources>
- <j2se version="1.6+" max-heap-size="512m"/>
-
- <jar href="lib/commons-cli-1.0.jar"/>
- <jar href="lib/Jama.jar"/>
- <jar href="lib/jas-aida-dev.jar"/>
- <jar href="lib/jas-aida.jar"/>
- <jar href="lib/jas-freehep-base.jar"/>
- <jar href="lib/jas-freehep-hep.jar"/>
- <jar href="lib/jas-jas-plotter.jar"/>
- <jar href="lib/jas-jel.jar"/>
- <jar href="lib/jas-JMinuit.jar"/>
- <jar href="lib/jogl.jar"/>
- <jar href="lib/jh.jar"/>
- <jar href="lib/oncrpc.jar"/>
- <jar href="lib/log4j-1.2.15.jar"/>
- <jar href="lib/ostermillerutils_1_05_00.jar"/>
- <jar href="lib/wired-base-4.0.beta.3-SNAPSHOT.jar"/>
- <jar href="lib/ws-commons-util-1.0.2.jar"/>
- <jar href="lib/xercesImpl.jar"/>
- <jar href="lib/xml-apis.jar"/>
- <jar href="lib/xmlrpc-client-3.1.jar"/>
- <jar href="lib/xmlrpc-common-3.1.jar"/>
- <jar href="lib/jlibeps.jar"/>
- <jar href="lib/xmlrpc-server-3.1.jar"/>
- <jar href="lib/commons-logging-1.1.jar"/>
- <jar href="lib/commons-codec-1.4.jar"/>
- <jar href="lib/xml-apis-ext.jar"/>
- <jar href="lib/batik-dom.jar"/>
- <jar href="lib/batik-anim.jar"/>
- <jar href="lib/batik-svggen.jar"/>
- <jar href="lib/batik-css.jar"/>
- <jar href="lib/batik-bridge.jar"/>
- <jar href="lib/batik-parser.jar"/>
- <jar href="lib/batik-xml.jar"/>
- <jar href="lib/batik-gui-util.jar"/>
- <jar href="lib/batik-script.jar"/>
- <jar href="lib/batik-transcoder.jar"/>
- <jar href="lib/batik-svg-dom.jar"/>
- <jar href="lib/batik-extension.jar"/>
- <jar href="lib/batik-codec.jar"/>
- <jar href="lib/batik-util.jar"/>
- <jar href="lib/batik-swing.jar"/>
- <jar href="lib/batik-ext.jar"/>
- <jar href="lib/batik-gvt.jar"/>
- <jar href="lib/batik-awt-util.jar"/>
- <jar href="help/help.jar"/>
-
- <jar href="atlantis.jar" main="true"/> <!-- look for main class here -->
- </resources>
-
- <application-desc main-class="atlantis.Atlantis">
- <argument>--config</argument>
- <argument>configuration/@CONFIG@</argument>
- <argument>--debug</argument>
- <argument>DEBUG</argument>
- </application-desc>
-
-</jnlp>
-
diff --git a/graphics/AtlantisJava/src/atlantis/ACommandLine.java b/graphics/AtlantisJava/src/atlantis/ACommandLine.java
deleted file mode 100644
index 3c87dcf9106..00000000000
--- a/graphics/AtlantisJava/src/atlantis/ACommandLine.java
+++ /dev/null
@@ -1,399 +0,0 @@
-package atlantis;
-
-import atlantis.event.AEpsImageProducer;
-import atlantis.event.AImageProducer;
-import atlantis.event.AEventSource;
-import atlantis.event.APngImageProducer;
-import atlantis.event.ASvgImageProducer;
-import atlantis.globals.AGlobals;
-import atlantis.gui.AGUI;
-import atlantis.utils.ALogger;
-import atlantis.utils.AMath;
-import java.awt.Dimension;
-import org.apache.commons.cli.CommandLineParser;
-import org.apache.commons.cli.GnuParser;
-import org.apache.commons.cli.HelpFormatter;
-import org.apache.commons.cli.Option;
-import org.apache.commons.cli.OptionBuilder;
-import org.apache.commons.cli.Options;
-import org.apache.commons.cli.CommandLine;
-import org.apache.commons.cli.ParseException;
-
-/**
- * This package-private class holds all the command line options
- * as well as providing verification
- * @author Sebastian Boeser
- */
-class ACommandLine {
-
- //A help formatter
- private final HelpFormatter formatter = new HelpFormatter();
-
- private AGlobals globals = AGlobals.instance();
-
- //The set of command-line options
- private final Options options = new Options();
-
- //The usage line
- private static final String usage = "Atlantis [OPTIONS] [[-s]SOURCE]";
-
- //The help message header and footer
- private final String headerMsg;
- private final String footerMsg;
-
-
- /**
- * Create all the options in the constructor. Options are sorted alphabetically in here.
- */
- ACommandLine(){
-
- //show HLTAutokey tracks
- options.addOption(new Option("a", false, "show HLTAutoKey tracks"));
-
- //configuration file
- options.addOption(OptionBuilder.withArgName("file")
- .hasArg()
- .withDescription("read configuration from specified file")
- .withLongOpt("config")
- .create("c")
- );
-
-
- //debug
- String debugDescr = "log messages of level to " +
- "'stdout', optionally to file destination. " +
- "Message levels are "+ ALogger.getStringLevels() + " (INFO is default)";
- options.addOption(OptionBuilder
- .hasArg()
- .hasOptionalArg()
- .withArgName("level [destination]")
- .withDescription(debugDescr)
- .withLongOpt("debug")
- .create('d')
- );
-
-
- //help/usage
- options.addOption(new Option("h", "help", false, "display this help message"));
-
- //demo mode
- options.addOption(OptionBuilder.withArgName("projections")
- .hasOptionalArg()
- .withDescription("colon seperated list of projections for the demo mode (e.g \"-j YX:VP\"). "
- + "Available projections/actions are YX, "
- + "VP(" + AMath.PHI + AMath.ETA + "), "
- + "RZ(" + AMath.RHO + "Z), "
- + "FR(" + AMath.PHI + AMath.RHO + "), "
- + "FZ(" + AMath.PHI + "Z), "
- + "XZ(X'Z), "
- + "YZ(Y'Z), "
- + "LegoPlot, "
- + "NE(next event)")
- .withLongOpt("projection")
- .create("j")
- );
-
- //loop mode
- String loopDescr = "Set event navigation mode, supported values are "
- +AEventSource.NavigationMode.LOOP.toString()+", "
- +AEventSource.NavigationMode.RANDOM.toString()+", "
- +AEventSource.NavigationMode.SEQUENTIAL.toString();
- options.addOption(OptionBuilder.withArgName("mode")
- .hasArg()
- .withDescription(loopDescr)
- .withLongOpt("loop")
- .create("l")
- );
-
- //color map
- options.addOption(OptionBuilder.withArgName("file")
- .hasArg()
- .withDescription("read colourmap from specified file")
- .withLongOpt("colormap")
- .create("m")
- );
-
- // output image files
- String outputDescr = "Output event image " +
- "into directory dir (default: current directory) "+
- "of dimensions width x height (default: 800x828). "+
- "If height is not specified the aspect ratio of the canvas is used. " +
- "If scale is given, images will be scaled by that factor (use for thumbnails). "+
- "If a filename is given, that file will be overwritten, "+
- "otherwise a new file will be created for each event. "+
- "The output format may be specified as PNG (the default) or EPS using" +
- "the --outputformat option.";
- options.addOption(OptionBuilder.hasOptionalArgs(4)
- .withArgName("[dir] [width[xheight]] [scale] [filename]")
- .withDescription(outputDescr)
- .withLongOpt("output")
- .create('o')
- );
-
- String outputFormatDescr = "output format for -o option (eps or png, default is png)";
- options.addOption(OptionBuilder.hasArg()
- .withArgName("format")
- .withDescription(outputFormatDescr)
- .withLongOpt("outputformat")
- .create('f')
- );
-
- //event loop intervall
- options.addOption(OptionBuilder.withArgName("seconds")
- .hasArg()
- .withDescription("pause inbetween events and/or projections options")
- .withLongOpt("pause")
- .create("p")
- );
-
- //default source
- String sourceDescr = "Set initial event source, e.g\n"+
- "* [file://]<filename>\n"+
- "* http://<url>\n"+
- "* xmlrpc://<server>:<port>\n"+
- "* oncrpc://<server>[:port][:stream]";
- options.addOption(OptionBuilder.withArgName("source")
- .hasArg()
- .withDescription(sourceDescr)
- .withLongOpt("source")
- .create("s")
- );
-
- //update config
- options.addOption(new Option("x", "updateconfig", false, "update user's configuration file"));
-
- //max GUI width
- options.addOption(OptionBuilder.withArgName("maxwidth")
- .hasArg()
- .withDescription("maximum screen width used by Atlantis")
- .withLongOpt("maxwidth")
- .create("w")
- );
-
-
- //image server
- options.addOption(OptionBuilder.hasArgs(1)
- .withArgName("port")
- .withDescription("Run a server on port <port> which accepts " +
- "event data from a client and returns images")
- .withLongOpt("imgserver")
- .create('I')
- );
-
-
- /**
- * Now create header and footer Messages
- */
- headerMsg = "\nMandatory arguments to long options are " +
- "mandatory for short options too.\n";
- footerMsg = "\nAtlFast objects were supported up to " +
- "AtlantisJava-09-05-28 via \"Fast\" option.\n" +
- "Beginner simplified GUI was supported up to " +
- "AtlantisJava-09-05-28 via \"Beginner\" option.\n" +
- "CTB 2004 geometry was supported up to " +
- "AtlantisJava-09-07-42 via -t, --testbeam option.\n";
-
- }
-
- /**
- * Parse and validate the command line options
- */
- void process(String[] args){
-
- //Create GNU style parse
- CommandLineParser parser = new GnuParser();
-
- //Now try parsing the options
- try {
-
- //invoke GNU parser
- CommandLine cmdLine = parser.parse(options, args);
-
- /**
- * Now validate and process all options
- */
-
- //auto-keys
- if(cmdLine.hasOption('a')) globals.setHLTAutoKeys(true);
-
- //config
- if(cmdLine.hasOption('c')){
- Atlantis.configCommandLine = cmdLine.getOptionValue('c', null);
- }
-
- //debug
- if(cmdLine.hasOption('d')){
- //Get option values
- String[] vals = cmdLine.getOptionValues('d');
- //this arg will always be there
- String level = vals[0];
- if (! ALogger.getStringLevels().contains(level))
- throw new ParseException("Invalid logging level "+level);
- //Check if there was also another argument
- String destination = null;
- if(vals.length == 2) destination = vals[1];
-
- //Finally initialize the logger
- ALogger.initialize(level,destination);
- }
-
- //help
- if(cmdLine.hasOption('h')) {
- formatter.printHelp(usage, headerMsg, options, footerMsg);
- System.exit(0);
- }
-
- //image server
- if(cmdLine.hasOption('I')){
- Atlantis.imageServerPort = Integer.parseInt(cmdLine.getOptionValue('I'));
- if (Atlantis.imageServerPort < 0)
- throw new ParseException("Port number "+cmdLine.getOptionValue('I')+
- " is not valid for -I option");
- //Check for other mutual exclusive options
- if (cmdLine.hasOption('j') || cmdLine.hasOption('p'))
- throw new ParseException("Can not use option -I with -j or -p options");
- }
-
- //demo mode projections
- if(cmdLine.hasOption('j')){
- //NOTE: default is not null but "", so we can distinguish inbetween
- //this flag being set or not w/o introducing more parameters
- Atlantis.selectedProjections = cmdLine.getOptionValue('j', "");
- }
-
- //navigation mode
- if(cmdLine.hasOption('l')){
- //Get arguments
- String loopMode = cmdLine.getOptionValue('l',null);
- if (loopMode == null)
- throw new ParseException("Option -l needs an argument");
- Atlantis.initialMode = AEventSource.NavigationMode.valueOf(loopMode);
- }
-
-
- //color map
- if(cmdLine.hasOption('m')){
- // retrieve the argument for options or assign default value
- Atlantis.colormapCommandLine = cmdLine.getOptionValue('m', null);
- }
-
- // generate PNG/EPS output files
- if(cmdLine.hasOption('o'))
- {
- String format = "PNG";
- if (cmdLine.hasOption('f')) {
- String formatVal = cmdLine.getOptionValue('f');
- format = formatVal.toUpperCase();
- if (!("EPS".equals(format)||"PNG".equals(format))) {
- throw new ParseException("Invalid output format "+formatVal);
- }
- }
- String[] vals = cmdLine.getOptionValues('o');
- this.processImageOutputOptions(vals,format);
- }
-
- // generate PNG output files
- if(cmdLine.hasOption('e'))
- {
- String[] vals = cmdLine.getOptionValues('e');
- this.processImageOutputOptions(vals,"EPS");
- }
-
- //source
- if (cmdLine.hasOption('s')){
- //Simply set this as default event source
- Atlantis.initialEventSource = cmdLine.getOptionValue('s');
- }
-
- //pause
- if (cmdLine.hasOption('p')){
- //Check for integer value
- String val = cmdLine.getOptionValue('p', null);
- try {
- Atlantis.loopInterval = Integer.parseInt(val);
- } catch (NumberFormatException nfe) {
- throw new ParseException("Invalid seconds value "+val+" for -p option");
- }
- }
-
- //GUI width
- if(cmdLine.hasOption('w')){
- String val = cmdLine.getOptionValue('w', null);
- try {
- int maxWidth = Integer.parseInt(val);
- AGUI.getGUI().setMaxWidth(maxWidth);
- } catch (NumberFormatException e) {
- throw new ParseException("Invalid width value "+val+" for -w option");
- }
- }
-
- //update config
- if(cmdLine.hasOption('x')) Atlantis.updateConfig = true;
-
- //finally check for positional options (i.e w/o --opt)
- String[] unspecifiedOpts=cmdLine.getArgs();
- if (unspecifiedOpts.length > 0){
- //We accept only one, which is a single string for the event source
- if ((unspecifiedOpts.length != 1)
- || cmdLine.hasOption('s')
- || cmdLine.hasOption('I')){
- throw new ParseException("Can only specify one event source");
- }
- Atlantis.initialEventSource = unspecifiedOpts[0];
- }
-
- } catch(ParseException ex) {
- //Every error above should have thrown a parse exception
- //Show help message and exit
- System.err.println("\n" + ex.getMessage() + "\n");
- formatter.printHelp(usage, headerMsg, options, footerMsg);
- System.exit(1);
- }
-
- }
-
- private void processImageOutputOptions(String[] vals, String fileFormat) throws ParseException {
- try
- {
- //vals[0] - directory to store events and png into
- //Use current directory as default
- String dir=System.getProperty("user.dir");
- if ((vals!=null)&&(vals.length > 0)) dir = vals[0];
- // vals[1] - WidthxHeight string
- Dimension dim=new Dimension(800,828);
- if ((vals!=null)&&(vals.length > 1)){
- short width = Short.parseShort(vals[1].split("x")[0]);
- short height =-1;
- if (vals[1].split("x").length > 1)
- height = Short.parseShort(vals[1].split("x")[1]);
- dim = new Dimension(width,height);
- }
- // vals[2] - scale factor, default is one
- double scale = 1;
- if ((vals!=null)&&(vals.length > 2)) scale = Double.parseDouble(vals[2]);
- // vals[3] - fixed filename, default is null
- String fixedFile = null;
- if ((vals!=null)&&(vals.length > 3)) fixedFile = vals[3];
- //Now create a new image generator
- if ("EPS".equals(fileFormat)) {
- Atlantis.imageProducer = new AEpsImageProducer(dir,dim,scale,fixedFile);
- }
- else if ("PNG".equals(fileFormat)) {
- Atlantis.imageProducer = new APngImageProducer(dir,dim,scale,fixedFile);
- }
- else if ("SVG".equals(fileFormat)) {
- Atlantis.imageProducer = new ASvgImageProducer(dir,dim,scale,fixedFile);
- }
- else {
- throw new Error("Invalid file format for output: "+fileFormat);
- }
- } catch (NumberFormatException nfe){
- throw new ParseException("Invalid parameters to option -o");
- } catch (IndexOutOfBoundsException iob){
- throw new ParseException("Invalid dimension parameter to option -o");
- } catch (AImageProducer.InstantiationException iex){
- throw new ParseException("Invalid configuration for option -o: "+iex.getMessage());
- }
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/AOpenGLTools.java b/graphics/AtlantisJava/src/atlantis/AOpenGLTools.java
deleted file mode 100644
index 02cbf863cc9..00000000000
--- a/graphics/AtlantisJava/src/atlantis/AOpenGLTools.java
+++ /dev/null
@@ -1,22 +0,0 @@
-package atlantis;
-
-import javax.media.opengl.GLCanvas;
-import javax.media.opengl.GLCapabilities;
-
-/**
- * Provides utility method to check if OpenGL is available.
- * @author Adam
- */
-public class AOpenGLTools {
-
- public static boolean isOpenGLAvailable() {
- try {
- GLCapabilities cap = new GLCapabilities();
- GLCanvas canv = new GLCanvas(cap);
- } catch (Error e) {
- // Expect some kind of hard exception if the class can't be loaded
- return false;
- }
- return true;
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/Atlantis.java b/graphics/AtlantisJava/src/atlantis/Atlantis.java
deleted file mode 100644
index e54be406c3a..00000000000
--- a/graphics/AtlantisJava/src/atlantis/Atlantis.java
+++ /dev/null
@@ -1,770 +0,0 @@
-package atlantis;
-
-import java.awt.Toolkit;
-import java.io.File;
-import java.io.InputStream;
-import java.lang.reflect.InvocationTargetException;
-
-import javax.swing.SwingUtilities;
-import javax.swing.UIManager;
-import javax.xml.parsers.DocumentBuilder;
-import javax.xml.parsers.DocumentBuilderFactory;
-
-import org.w3c.dom.Node;
-import org.w3c.dom.Document;
-
-import atlantis.canvas.ACanvas;
-import atlantis.config.ADefaultValues;
-import atlantis.config.AConfigUpdater;
-import atlantis.event.AEventManager;
-import atlantis.event.AEventSource.InvalidEventSourceException;
-import atlantis.event.AEventSource.NoMoreEventsException;
-import atlantis.event.AEventSource.ReadEventException;
-
-import atlantis.geometry.AAtlasDetector;
-import atlantis.geometry.ADetectorSystem;
-import atlantis.globals.AGlobals;
-import atlantis.graphics.colormap.AColorMap;
-import atlantis.gui.ADemoDialog;
-import atlantis.gui.AEventQueue;
-import atlantis.gui.AGUI;
-import atlantis.gui.AStartupWindow;
-import atlantis.gui.AEventLoopDialog;
-import atlantis.output.AExceptionHandler;
-import atlantis.parameters.APar;
-import atlantis.projection.AProjectionsManager;
-import atlantis.utils.AAtlantisException;
-import atlantis.utils.AUtilities;
-import atlantis.utils.xml.AXMLErrorHandler;
-import atlantis.utils.xml.AXMLEntityResolver;
-import atlantis.utils.xml.AXMLUtils;
-import atlantis.event.AImageProducer;
-import atlantis.event.AEventSource;
-import atlantis.utils.ALogger;
-import atlantis.event.xmlrpc.AServerXMLRPC;
-import atlantis.event.xmlrpc.AServerXMLRPCEventSource;
-import atlantis.gui.ACrashReporter;
-import atlantis.gui.ADemoLoop;
-import atlantis.interactions.AInteractionsConfigReader;
-import atlantis.utils.ANewIdHelper;
-import atlantis.utils.xml.AXMLEntityResolver;
-
-import java.util.Arrays;
-import java.util.Vector;
-import javax.swing.JOptionPane;
-
-
-/**
- * Main class of Atlantis application.
- * Initialises the application's main components and provides access to them.
- */
-public class Atlantis
-{
- // The main class logger gets initialized after command line options
- // are processed. All other classes will just do
- // logger = ALogger.getLogger(Class.class) in their attribute definitions
- private static ALogger logger = null;
-
- /** Store for Atlantis global state. */
- private static AGlobals globals = AGlobals.instance();
-
- // expands into SVN tag
- private static String versionAtlantisJava = "$HeadURL: file:///atlas/scratch0/graemes/ao-mirror/graphics/AtlantisJava/tags/AtlantisJava-09-16-05-18/src/atlantis/Atlantis.java $";
-
- private static final String FILE_SEPAR = System.getProperty("file.separator");
- private static final String USER_HOME_DIR = System.getProperty("user.home");
-
- // This is the URL that is used as default for "Read events from URL"
- // The stream is set to "Default" as this is the only one guaranteed to be there.
- private static final String LIVE_POINT_1_EVENTS_URL =
- "http://atlas-live.cern.ch/event_files/Default";
-
- // expected file name of the user customised configuration file
- // (stored in the user's home directory)
- private static final String USER_CONFIG_FILE_PATH =
- USER_HOME_DIR + FILE_SEPAR + ".Atlantis-config.xml";
-
- // configuration file from the Atlantis distribution (default config)
- private static final String DISTRIB_DEFAULT_CONFIG_FILE =
- "configuration" + FILE_SEPAR + "config.xml";
-
- // this is checksum file of the distribution's main configuration file
- // if it doesn't match, Atlantis tries to update user's configuration
- // or the --config <configfile> configuration
- // it is an indicator that the master config.xml changed
- private static final String CONFIG_CHECKSUM_FILE_PATH =
- USER_HOME_DIR + FILE_SEPAR + ".Atlantis-config.chk";
-
- // limit the total width of Atlantis to this number of pixels (0 = screen width)
- private static int MAX_WIDTH = 0;
-
- /**
- * The list of parameters that can be set from the command line
- */
- // force Atlantis to update the personal configuration file
- protected static boolean updateConfig = false;
- // configuration file specified as command line argument
- protected static String configCommandLine = null;
- // colormap file specified as command line argument
- protected static String colormapCommandLine = null;
- // selected projections specified as command line argument for demo mode
- protected static String selectedProjections = null;
- // timer delay from command line for reading events in a loop
- protected static Integer loopInterval = null;
- // navigation mode from command line
- protected static AEventSource.NavigationMode initialMode = null;
- // initial event source, may be specified from command line
- protected static String initialEventSource = "events"+FILE_SEPAR+"test_events.zip";
- // Object for saving event images in a directory
- protected static AImageProducer imageProducer = null;
- // Port number for image server from command line
- protected static int imageServerPort = -1;
-
- private static final boolean atlantisWithOpenGL = false;
-
- private static final String INIT_ERROR_MSG =
- "Error during Atlantis initialization.\n" +
- "(configuration file related issues might be\n" +
- "corrected by running with -x (updating customised configuration)).\n" +
- "See console output for more information.";
-
- // main Atlantis components
- private static APar parameterStore = null;
- private static AEventManager eventManager = null;
- private static ADetectorSystem detector = null;
- private static ACanvas canvas = null;
- private static AGUI gui = null;
-
- /**
- * Returns the delay for timer for automatic event reading from server
- * when this option was specified as command line argument
- * @return the delay in seconds
- */
- private static Integer getLoopInterval()
- {
- return loopInterval;
- }
-
-
- /**
- * Set the default java look and feel ("metal")
- */
- private static void setLookAndFeel()
- {
- try {
- UIManager.setLookAndFeel("javax.swing.plaf.metal.MetalLookAndFeel");
- } catch(Exception e) {
- AExceptionHandler.processException("Error setting default Look and Feel", e);
- }
- }
-
-
- /**
- * Check if the checksum file CONFIG_CHECKSUM_FILE_PATH is up-to-date.
- * Create one if it does not exist or update it if it is not up-to-date.
- */
- private static void checkAndUpdateConfigCheckSumFile(String distribFile)
- throws AAtlantisException
- {
- if(Atlantis.updateConfig)
- {
- logger.info("Checksum not checked, run with -x, configuration update " +
- "forced anyway.");
- return;
- }
-
- logger.info("Checking if the used configuration is up-to-date ...");
-
- logger.debug("Checking checksum of the configuration file from the " +
- "Atlantis distribution: " + distribFile);
- logger.debug("Checksum file: " + CONFIG_CHECKSUM_FILE_PATH);
-
- boolean checkSumExists = new File(CONFIG_CHECKSUM_FILE_PATH).exists();
-
- if(checkSumExists)
- {
- boolean comparison = AConfigUpdater.compareChecksums(distribFile,
- CONFIG_CHECKSUM_FILE_PATH);
- if(comparison)
- {
- logger.debug("Checksum file - checksum match, no update necessary.");
- Atlantis.updateConfig = false;
- return;
- }
- }
-
- // doesn't match, force update of custom configuration
- // and re-generate checksum
- AConfigUpdater.createChecksumFile(distribFile, CONFIG_CHECKSUM_FILE_PATH);
- logger.debug("Checksum didn't match, updating customised " +
- "configuration forced.");
- Atlantis.updateConfig = true;
-
- } // checkAndUpdateConfigCheckSumFile() ---------------------------------
-
-
-
- /**
- * Returns InputStream to read XML application configuration from.
- *
- * Evaluates sources from which Atlantis XML configuration is
- * possibly loaded from (prioritised):
- * 1) -c, --config <configfile.xml> specified on the command line
- * here available in configCommandLine variable
- * 2) if USER_CONFIG_FILE_PATH exists, read that one
- * 3) or eventually read <ATLANTIS_DIRECTORY>/DISTRIB_DEFAULT_CONFIG_FILE
- *
- * User's customised (in the home directory) or --config <configfile> are
- * also tried to be updated when the checksum configuration file doesn't
- * match. Atlantis calculates checksum of the main distribution
- * configuration file and stores that checksum in CONFIG_CHECKSUM_FILE_PATH.
- * If this checksum doesn't match when Atlantis is run on the user's
- * home directory configuration or --config <configfile> configuration,
- * automatic configuration file update process is executed.
- *
- * Updating means that config.xml (main, base) contains some changes
- * which are not consistent with the user's config or custom config
- * and they need to be propagated there.
- * Update process:
- * AConfigUpdater.updateConfigurationFile(distribFilePath, configToUse)
- * is then executed.
- *
- * Do not try to update custom configuration which is located in the same
- * directory as the base config file - it means that such custom config
- * comes with AtlantisJava distribution - no need updating this one.
- */
- private static InputStream getXMLConfigAsStream() throws Exception
- {
- String configToUse = null;
-
- logger.info("Reading the XML configuration ...");
-
- // configuration file from the Atlantis distribution
- String distribFilePath = getHomeDirectory() + DISTRIB_DEFAULT_CONFIG_FILE;
-
- // distribution config file checksum only taken into account when having
- // --config command line argument or when running from user's (home
- // directory) configuration
-
- // option / source 1) - command line argument - highest priority
- if(configCommandLine != null)
- {
- logger.info("Using configuration file specified on the command " +
- "line: " + configCommandLine);
- // sets Atlantis.updateConfig = true; accordingly
- checkAndUpdateConfigCheckSumFile(distribFilePath);
- configToUse = configCommandLine;
- }
- else
- {
- // check if we can read the user configuration file (in home dir.)
- // option / source 2)
- if(new File(USER_CONFIG_FILE_PATH).exists())
- {
- logger.info("Using user's configuration file: " +
- USER_CONFIG_FILE_PATH);
- // sets Atlantis.updateConfig = true; accordingly
- checkAndUpdateConfigCheckSumFile(distribFilePath);
- configToUse = USER_CONFIG_FILE_PATH;
- }
- else
- {
- // // option / source 3)
- logger.info("Using distribution configuration file: " +
- distribFilePath);
- if(Atlantis.updateConfig)
- {
- logger.warn("Update custom configuration flag is set, " +
- "that doesn't make sence - no custom config " +
- "file available, ignored.");
- Atlantis.updateConfig = false;
- }
- configToUse = distribFilePath;
- }
- }
-
-
- try
- {
- // try to update custom configuration before loading it
- if(Atlantis.updateConfig)
- {
- logger.info("Updating customised configuration file ...");
- // check if configToUse comes from atlantis home directory, if
- // so, then configToUse is from AtlantisJava distribution, should
- // already be up-to-date and no automatic update will be performed
- String atlantisHome = Atlantis.getHomeDirectory();
- String customConfigDir = new File(configToUse).getAbsolutePath();
-
- logger.info("Updating configuration - customised config directory: " +
- customConfigDir);
- // if configToUse comes from AtlantisJava distribution, customConfigDir
- // path start with atlantisHome path plus 'configuration' directory
- // (does not filter off webstart since .getHomeDirectory()
- // returns user's home directory when running via webstart,
- // the condition below should be improved to cover webstart situation
- // as well ...)
- if(customConfigDir.startsWith(atlantisHome))
- {
- logger.debug("Updating configuration - Atlantis home: " + atlantisHome);
- logger.info("Updating configuration - customised config directory " +
- "is in the Atlantis home, no need updating it.");
- }
- else
- {
- AConfigUpdater.updateConfigurationFile(distribFilePath,
- configToUse);
- }
- }
- }
- catch(AAtlantisException aae)
- {
- logger.error(aae.getMessage());
- }
-
-
- InputStream isConfig = null; // configuration file input stream
- try
- {
- isConfig = AUtilities.getFileAsStream(configToUse);
- }
- catch(AAtlantisException aae)
- {
- String m = "Could not read " + configToUse + " reason: " +
- aae.getMessage();
- throw new Exception(m);
- }
-
- logger.info("Going to parse XML configuration: " + configToUse);
- return isConfig;
-
- } // getXMLConfigAsStream() ---------------------------------------------
-
-
-
- private static void initAtlantis() {
-
- String homeDirectory = Atlantis.getHomeDirectory();
- globals.setHomeDirectory(homeDirectory);
-
- //Create startup window and set how often
- //the progress bar will get update below
- AStartupWindow startupWin = new AStartupWindow(9);
-
- try {
- System.setProperty("sun.awt.exception.handler",
- "AExceptionHandler");
-
- startupWin.updateText("Atlantis initialisation");
-
- //Show atlantis home
- logger.info("Atlantis home: "+homeDirectory);
-
- //Create an event manager
- eventManager = AEventManager.instance();
-
- // reading Atlantis runtime configuration (text file in the home directory)
- logger.info("Reading Atlantis runtime configuration, file: " +
- ADefaultValues.CONFIGFILE);
- ADefaultValues.readRuntimeValues();
-
-
- // read the configuration xml files -------------------------
- startupWin.updateText("Reading Atlantis configuration");
-
- // evaluate configuration sources options and get the configuration
- InputStream isConfig = getXMLConfigAsStream();
-
- // prepare XML parser for parsing the XML configuration
- DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance();
- factory.setValidating(true);
- DocumentBuilder parser = factory.newDocumentBuilder();
- parser.setErrorHandler(new AXMLErrorHandler());
- parser.setEntityResolver(new AXMLEntityResolver());
-
- // parse the XML configuration
- String configBase = homeDirectory + FILE_SEPAR + "configuration" + FILE_SEPAR;
- Document xmlConfigDoc = parser.parse(isConfig, configBase);
- Node rootNode = xmlConfigDoc.getDocumentElement();
- // read the XML initialization node, and performs initialization
- Node initializationNode = AXMLUtils.getChild(rootNode, "Initialization");
-
- // parse the ID dictionary
- String geometryBase = homeDirectory + FILE_SEPAR + "geometry" + FILE_SEPAR;
- InputStream isIdDict = AUtilities.getFileAsStream(geometryBase+"ATLAS_IDS.xml");
- Document xmlDictDoc = parser.parse(isIdDict, geometryBase);
- ANewIdHelper.construct(xmlDictDoc.getDocumentElement());
-
-
- // read colour map (colormap.xml) configuration -----------------
- startupWin.updateText( "Reading colour map");
- AColorMap.readColorMap(Atlantis.colormapCommandLine);
-
-
- // creating canvas ----------------------------------------------
- startupWin.updateText("Building canvas and projections");
- Node canvasNode = AXMLUtils.getChild(initializationNode, "Canvas");
- canvas = ACanvas.construct(canvasNode);
-
- // reading parameters ------------------------------------------
- logger.info("Building parameters");
- parameterStore = APar.construct(AXMLUtils.getChild(rootNode, "Parameters"));
- parameterStore.update(AXMLUtils.getChild(rootNode, "ParameterDifferences"));
- eventManager.addNewEventListener(parameterStore);
- // creating the Projections Manager (reading the projections)
- Node interactionsNode =
- AXMLUtils.getChild(initializationNode, "Interactions");
- AInteractionsConfigReader.readInteractions(interactionsNode);
- AProjectionsManager.initialise();
-
- //set the output flag: 0 normal 1 eta/phi/pt 2 px/py/pz 3 eta/phi/pt/px/py/pz
- if(parameterStore.get("Minerva","alternativesimpleoutput").getStatus()){
- if(parameterStore.get("Minerva","simpleoutput").getStatus()){
- globals.setSimpleOutput(3);
- }else{
- globals.setSimpleOutput(2);
- }
- }else if(parameterStore.get("Minerva","simpleoutput").getStatus()){
- globals.setSimpleOutput(1);
- }
-
- // reading the geometry ----------------------------------------
- startupWin.updateText("Reading geometry");
- String geomPrefix = Atlantis.getHomeDirectory() + "geometry" +
- Atlantis.FILE_SEPAR;
- String geomName = ADefaultValues.get("GeometryName");
- if (!"".equals(geomName)) {
- // name of the geometry considered after underscore
- geomName = "_" + geomName;
-
- // do the geometry files exist - just try loading the files
- String geomNameFull1 = geomPrefix + "AGeometry" + geomName + ".xml";
- String geomNameFull2 = geomPrefix + "AMuonGeometry" + geomName + ".xml";
- try {
- // just accessibility test
- @SuppressWarnings("unused")
- InputStream i = AUtilities.getFileAsStream(geomNameFull1);
- i = AUtilities.getFileAsStream(geomNameFull2);
- i = null;
- } catch (AAtlantisException ae) {
- geomName = ""; // will fall back to default geometry
- }
- }
- String geomIdCalo = geomPrefix + "AGeometry" + geomName + ".xml";
- String geomMuon = geomPrefix + "AMuonGeometry" + geomName + ".xml";
- detector = new AAtlasDetector(geomIdCalo, geomMuon);
- AAtlasDetector.setDetector(detector);
-
- canvas.finalizeConstruction();
- canvas.readCorners(AXMLUtils.getChild(rootNode, "WindowCorners"));
- // This is needed here, design should be changed to remove this problem
- canvas.setCurrentWindow(canvas.getCurrentWindowName());
-
- //Add the canvas as a NewEvent event listener
- eventManager.addNewEventListener(canvas);
-
- // reading the first event --------------------------------------
- startupWin.updateText("Reading initial event");
- getInitialEvent();
-
- // displaying GUI, Canvas ---------------------------------------
- startupWin.updateText("Displaying GUI and Canvas");
-
- // update colors to those selected in the config file
- AColorMap.setColorMap(parameterStore.get("Prefs", "ColorMap").getI());
- // NB: must calculate the size of GUI after calling
- // canvas.setVisible(true), in which the real final size of Canvas
- // will be calculated
- canvas.setCanvasVisible(true);
-
- // Now the canvas is on the screen and have a size, check if we need
- // to rework the aspect ratio on YX projections at all as is the case
- // when going to control room projectors for example - AD
- canvas.correctAspectRatios();
-
- //Create the GUI
- gui = AGUI.getGUI();
-
- //If we got one, show it (e.g. not in headless mode)
- if (gui != null){
- gui.setMaxWidth(MAX_WIDTH);
- gui.setName("Atlantis GUI"); // Name is used by JUnit/FEST tests
- // Tell the parameter store about the GUI so it can inform the GUI of parameter changes
- parameterStore.addParameterChangeListener(gui);
- //Display it
- gui.setVisible(true);
- // and register as a layout change listener
- canvas.addOverlay();
- canvas.addLayoutChangeListener(gui);
- }
-
- //Before starting any loops, inform user we are ready to go
- startupWin.updateText("Atlantis Ready");
-
- // Set the navigation mode if given on the command line.
- // Use SwingUtilities.invokeLater() to "defer until all pending events
- // have been processed", avoiding the deadlock that otherwise occurs.
- if (Atlantis.initialMode != null){
- SwingUtilities.invokeLater(new Runnable() {
- @Override
- public void run() {
- try {
- eventManager.setNavigationMode(initialMode);
- } catch (InvalidEventSourceException e) {
- logger.error("Invalid event source", e);
- }
- }
- });
- }
-
- //Set up event loop if requested
- if ((Atlantis.loopInterval != null)
- && (Atlantis.selectedProjections == null )
- && (!AGlobals.isAtlantisHeadless()) ) {
- // A loop interval has been given, but no projections -
- // so create an event loop dialog, but not in headless mode
- AEventLoopDialog dialog = AEventLoopDialog.getInstance();
-
- //set all properties
- dialog.setUpdateInterval(getLoopInterval());
- dialog.showDialog();
- dialog.startEventLoop();
- }
-
- //setup demo loop if requested
- if (Atlantis.selectedProjections != null) {
- //If user just gave -j, use default settings
- if (Atlantis.selectedProjections.equals(""))
- ADemoDialog.getInstance().setDefaultSequence();
- //User may also give the update interval
- if (getLoopInterval() != null)
- ADemoDialog.getInstance().setTimerInterval(getLoopInterval());
- ADemoDialog.getInstance().setVisible(true);
- ADemoDialog.getInstance().startDemo();
- }
-
- //Add an image server if requested on the command line
- if (imageServerPort >= 0) {
- AServerXMLRPC serv = new AServerXMLRPC(imageServerPort, AServerXMLRPCEventSource.class);
- serv.start();
- }
-
- //If we have a image saver, add it now as new event listener
- if (imageProducer != null){
- eventManager.addNewEventListener(imageProducer);
- //if we are also running in headless mode, add an automatic event loop
- if (AGlobals.isAtlantisHeadless()){
- //Check whether the event source is a file or an ONCRPC server
- //For a server, start the loop in a "try hard" mode, i.e only stop on ReadEventException
- boolean stopOnFailure = !(eventManager.getEventSource() instanceof atlantis.event.oncrpc.AONCRPCEventSource );
- //If a loop interval is given on the command line, use it,
- //otherwise, run in "as fast as can mode"
- int sleepTime = (Atlantis.loopInterval != null) ? Atlantis.loopInterval*1000 : 0;
- //Show warning in case of "as fast as we can mode"
- if (sleepTime == 0) logger.info("No loop intervall given - processing events as fast as possible");
- //Now create the loop
- ADemoLoop loop = new ADemoLoop(sleepTime,new Vector<String>(Arrays.asList("NE")),stopOnFailure);
- //And start it right away
- loop.startDemoLoop();
- //also wait for it to finish before the program finishes
- synchronized (loop) { loop.wait(); }
- }
- }
-
- } catch (Exception e) {
- logger.fatal(INIT_ERROR_MSG);
- logger.fatal(e.getMessage(), e);
- AExceptionHandler.processException(INIT_ERROR_MSG, e);
- } finally {
- if (startupWin != null) {
- startupWin.dispose();
- }
- }
-
- } // initAtlantis() -----------------------------------------------------
-
-
- protected static String getHomeDirectory()
- {
- // where was this class loaded from
- String temp = Atlantis.class.getResource("Atlantis.class").getFile();
-
- // remove "file://" or "file:"
- if (temp.startsWith("file://")) {
- temp = temp.substring(7);
- } else if (temp.startsWith("file:")) {
- temp = temp.substring(5);
- }
-
- if(temp.indexOf("!") > -1)
- {
- // atlantis is in a .jar file
- temp = temp.substring(0, temp.indexOf("!"));
- temp = temp.replaceAll("%20", " ");
- return temp.substring(0, temp.lastIndexOf('/') + 1);
- }
- // must be the current working directory of the user
- return System.getProperty("user.dir") + FILE_SEPAR;
-
- } // getHomeDirectory() -------------------------------------------------
-
- /**
- * Process the options passed on the command line
- * @param args the command line arguments
- */
- private static void processCommandLineParameters(String args[])
- {
-
- //echo the given command line options
- System.out.println("Command line arguments:");
- for(String arg : args) System.out.print(arg + " ");
- System.out.println("\n");
-
- //Then go and process the command line
- (new ACommandLine()).process(args);
-
- } // processCommandLineParameters() -------------------------------------
-
-
- /**
- * Try to read the initial event
- * - from the given event source
- * - from the default event
- */
- private static void getInitialEvent()
- {
- //Get the file where the default event is stored
- //if not a special source
- String eventPath = Atlantis.initialEventSource;
-
- // if this is not a special source then consider it
- // a) to be a file with relative or absolute path
- // b) to be a file relative to the Atlantis directory
- if (! eventPath.contains("://") ) {
- //This should be a file, see if it exists
- if(! new File(eventPath).exists()) {
- //try prepending atlantis home directory
- logger.info("File "+eventPath+" does not exist - trying in "+Atlantis.getHomeDirectory());
- eventPath = Atlantis.getHomeDirectory()+eventPath;
- }
-
- //All non specified sources are assumed to be files
- eventPath = "file://" + eventPath;
- }
-
- //be verbose
- logger.info("Reading the default event from " + eventPath);
- //set the event source and read an event
- try {
- eventManager.setEventSource(eventPath);
- eventManager.nextEvent();
- } catch (InvalidEventSourceException ies){
- //Write error message
- String msg = "Can not access "+eventPath+": "+ies.getMessage();
- logger.error(msg);
- //Show error dialog
- if (AGlobals.isAtlantisHeadless()) return;
- JOptionPane.showMessageDialog(ACanvas.getCanvas(), msg,
- "Invalid Event Source",JOptionPane.ERROR_MESSAGE);
- } catch (NoMoreEventsException nme){
- String msg = "No events in "+eventPath+": "+nme.getMessage();
- logger.error(msg);
- //Show error dialog
- if (AGlobals.isAtlantisHeadless()) return;
- JOptionPane.showMessageDialog(ACanvas.getCanvas(), msg,
- "No Events found",JOptionPane.ERROR_MESSAGE);
- } catch (ReadEventException rex){
- String msg = "Can not read events from "+eventPath+": "+rex.getMessage();
- logger.error(msg);
- //Show error dialog
- if (AGlobals.isAtlantisHeadless()) return;
- JOptionPane.showMessageDialog(ACanvas.getCanvas(), msg,
- "Can not read event",JOptionPane.ERROR_MESSAGE);
- }
- }
-
- /**
- * Get the SVN tag version from the HeadURL, which is automatically
- * substituted by SVN.
- */
- private static void setSVNTagInfo()
- {
- // SVN expands into $HeadURL: file:///atlas/scratch0/graemes/ao-mirror/graphics/AtlantisJava/tags/AtlantisJava-09-16-05-18/src/atlantis/Atlantis.java $,
- // we only want the tag name
- String s = Atlantis.versionAtlantisJava;
- // 0) Check we are in a tagged version
- if (!s.contains("tags")){
- Atlantis.versionAtlantisJava = "AtlantisJava (SVN tag n/a)";
- return;
- }
- // 1) Replace anything after src
- s=s.substring(0,s.indexOf("/src"));
- // 2) Next find the "tags" subdir and cut after that
- s=s.substring(s.indexOf("tags/")+5);
- //this should be the version
- Atlantis.versionAtlantisJava = s;
- }
-
- public static void main(String[] args)
- {
-
- /**
- * First thing always: say hello with a version number
- */
- //Retrieve the SVN version tag number
- setSVNTagInfo();
- globals.setVersion(versionAtlantisJava);
- globals.setLivePoint1EventsURL(LIVE_POINT_1_EVENTS_URL);
- globals.setUserConfigFile(USER_CONFIG_FILE_PATH);
- globals.setUseOpenGL(atlantisWithOpenGL);
- System.out.println("AtlantisJava version (SVN tag): " + Atlantis.versionAtlantisJava);
-
- // Any uncaught exception should be reported to the developers
- Thread.setDefaultUncaughtExceptionHandler(new ACrashReporter());
-
- /**
- * Now run all the checks for system properties
- */
-
- //Now set the default look and feel
- setLookAndFeel();
-
- // Disable rename file/make new directory from the file chooser
- UIManager.put("FileChooser.readOnly", Boolean.TRUE);
-
- /**
- * Process the command line parameters
- */
- //process args
- processCommandLineParameters(args);
-
- //Logger can be created only after cmdl opts to catch settings
- logger = ALogger.getLogger(Atlantis.class);
-
- //Do some OGL checks
- if (Atlantis.atlantisWithOpenGL) {
- logger.info("Testing for OpenGL");
- logger.info(AOpenGLTools.isOpenGLAvailable() ? "Open GL Available" : "Open GL Unavailable");
- }
-
- /**
- * Now go and create the manifold Atlantis classes and singletons.
- * Has to run on main thread so display is updated during initialization.
- */
- initAtlantis();
- // Replace event queue by AEventQueue, but only after initialization.
- try {
- SwingUtilities.invokeAndWait(new Runnable() {
- @Override
- public void run() {
- logger.debug("Waiting for AWT event queue to be empty.");
- }
- });
- } catch (InterruptedException e) {
- logger.error("Interrupted while waiting for event queue.", e);
- } catch (InvocationTargetException e) {
- logger.error("Error while waiting for event queue.",e);
- }
- Toolkit.getDefaultToolkit().getSystemEventQueue().push(new AEventQueue());
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/canvas/ACanvas.java b/graphics/AtlantisJava/src/atlantis/canvas/ACanvas.java
deleted file mode 100755
index 41b32a59cbc..00000000000
--- a/graphics/AtlantisJava/src/atlantis/canvas/ACanvas.java
+++ /dev/null
@@ -1,1113 +0,0 @@
-package atlantis.canvas;
-
-import atlantis.event.AEvent;
-import atlantis.event.ANewEventListener;
-import java.awt.BorderLayout;
-import java.awt.Color;
-import java.awt.Component;
-import java.awt.Dimension;
-import java.awt.Rectangle;
-import java.awt.Insets;
-import java.awt.Toolkit;
-import java.awt.geom.Point2D;
-import java.util.Enumeration;
-import java.util.Hashtable;
-import java.util.Stack;
-import java.util.Vector;
-import java.util.Set;
-
-import javax.swing.JFrame;
-import javax.swing.JLabel;
-import javax.swing.JLayeredPane;
-
-import org.w3c.dom.NamedNodeMap;
-import org.w3c.dom.Node;
-import org.w3c.dom.NodeList;
-
-import atlantis.globals.AGlobals;
-import atlantis.graphics.ACursorFactory;
-import atlantis.graphics.AIcon;
-import atlantis.graphics.layout.AGridLayout;
-import atlantis.parameters.APar;
-import atlantis.projection.AProjectionLegoPlot;
-import atlantis.utils.xml.AXMLUtils;
-import atlantis.gui.AClosingConfirmationDialog;
-import atlantis.gui.AInteractionToolBar;
-import atlantis.gui.APreferencesControl;
-import atlantis.interactions.AZMRInteraction;
-import atlantis.projection.AProjection;
-import atlantis.projection.AProjection2D;
-import atlantis.projection.AProjectionEventInfo;
-import atlantis.utils.ALogger;
-import java.awt.Graphics;
-import java.awt.event.WindowFocusListener;
-import java.util.Iterator;
-import javax.swing.JMenuBar;
-import javax.swing.JPanel;
-import javax.swing.event.ChangeEvent;
-import javax.swing.event.ChangeListener;
-
-/**
- * ACanvas is a singleton class that acts as a sort of WindowManager It knows the currentLayout (of the
- * windows), their history and the currentWindow. It also contains the title (Menu Bar).
- * Window changes are given via two letter commands e.g. "W5" inserted into the
- * CommandProcessor (static). The command processor informs ACanvas.
- * Each window also has its own layer that is stored in a JLayeredPane object.
- */
-public class ACanvas extends JPanel implements ANewEventListener {
-
- //Singleton instance
- private static ACanvas instance;
-
- private final static ALogger logger = ALogger.getLogger(ACanvas.class);
-
- /** The fraction of the screen width used by default. */
- public final double SCREEN_USAGE = 0.73;
- /** Temporary flag to set the window corners from config file. */
- protected boolean customisedCorner = false;
-
- //the layeredPane
- private JLayeredPane layeredPane;
- //from some reason we count or layers from 1000 on?
- private final int baseLayer = 1000;
-
- //A list of layout names and layouts
- private Hashtable<String, ALayout> layouts = new Hashtable<String, ALayout>();
- //The current canvas layout
- private ALayout currentLayout;
- //The name of the startup layout
- private String startupLayoutName;
- //Everyone that should get informed if the layout is changed
- private Vector<ALayoutChangeListener> layoutChangeListeners = new Vector<ALayoutChangeListener>();
-
- //Save a history of the windows layouts
- // - this is used for "Zoom/Unzoom colorimters" in VPlot
- private Stack<ALayout> windowLayoutHistory = new Stack<ALayout>(); //History of ALayout objects
- private Stack<String> windowNameHistory = new Stack<String>(); //History of the selected window
- private Stack<Vector<String>> windowsActive = new Stack<Vector<String>>(); //History of active (i.e. visible windows)
-
- private Hashtable<String,AWindow> windowsList; // A list of all window <name,object> pairs
- private AWindow currentWindow; // The currently selected window
- private AWindow paintingWindow; // The window we are currently painting in
- //Everyone that should get informed about changes of the active window
- private Vector<ChangeListener> windowChangeListeners = new Vector<ChangeListener>();
- //Everyone that should get informed about window freeze/unfreeze changes
- private Vector<ChangeListener> lockChangeListeners = new Vector<ChangeListener>();
-
- //The title bar showing Event/Run numbers etc.
- private ATitleMenuBar title;
-
- //If constructed from a config file, this stores the aspect ratio of the
- //canvas layout which was saved into the config file, this is then used
- //later to correct if the current screen is different
- private double oldaspect = 1.0;
-
- private JFrame parentWindow = null;
-
- private APar parameterStore;
-
- /**
- * Get the singleton instance.
- * @return
- */
- public static synchronized ACanvas getCanvas() {
- if (instance==null) throw new Error("Attempted to access ACanvas instance before initialization.");
- return instance;
- }
-
- /**
- * Create and return the singleton instance.
- * @param parameters
- */
- public static synchronized ACanvas construct(Node node) {
- instance = new ACanvas(node);
- return instance;
- }
-
- /**
- * Constructs the singleton instance by reading the config file.
- */
- private ACanvas(Node node) {
-
- if (!AGlobals.isAtlantisHeadless()) {
- // Create parent window
- parentWindow = new JFrame("Atlantis Canvas");
- parentWindow.add(this);
- }
-
- //Create the title bar
- title = new ATitleMenuBar();
-
- if (!AGlobals.isAtlantisHeadless()) {
- parentWindow.setJMenuBar(title);
- }
-
- //instanciate instance pointer for singleton class
- instance = this;
-
- if (!AGlobals.isAtlantisHeadless()) {
- // AClosingConfirmationDialog class handles closing Atlantis
- parentWindow.setDefaultCloseOperation(JFrame.DO_NOTHING_ON_CLOSE);
- parentWindow.addWindowListener(new AClosingConfirmationDialog(parentWindow));
-
- //Set the window icon
- AIcon.setIconImage(parentWindow);
- }
-
- // building the Layered Pane
- layeredPane = new JLayeredPane();
-
- // reading all the content of Canvas configuration node
- windowsList = new Hashtable<String,AWindow>();
- // Allow null Node to generate partially initialized instance for unit tests of
- // other classes that depend on ACanvas.
- if (node!=null) readConfig(node);
-
- } // ACanvas() ----------------------------------------------------------
-
- /**
- * For testing only: create instance without initializing.
- * @return
- */
- public static synchronized ACanvas constructDummyForTesting() {
- instance = new ACanvas(null);
- return instance;
- }
-
- void addParentWindowFocusListener(WindowFocusListener wfl) {
- if (parentWindow != null) {
- parentWindow.addWindowFocusListener(wfl);
- }
- }
-
- public void setCanvasVisible(boolean v) {
- if (parentWindow != null) {
- parentWindow.setVisible(v);
- } else {
- setVisible(v);
- }
- }
-
- public Rectangle getScreenSize() {
- if (parentWindow != null) {
- return parentWindow.getGraphicsConfiguration().getBounds();
- } else {
- // If we're headless then make up a size!
- return new Rectangle(1024, 768);
- }
- }
-
- public Rectangle getStartupCanvasSize() {
- if (parentWindow == null) {
- return null;
- }
- Rectangle canvpos = parentWindow.getBounds();
- Dimension canvlayoutdim = parentWindow.getPreferredSize();
- Rectangle canvbound = new Rectangle(canvpos.x, canvpos.y,
- canvlayoutdim.width, canvlayoutdim.height);
-
- return canvbound;
- }
-
- public JMenuBar getTitleBar() {
- if (parentWindow == null) {
- return null;
- }
- return parentWindow.getJMenuBar();
- }
-
- public void bringToFront() {
- if (parentWindow != null) {
- parentWindow.toFront();
- }
- }
-
- /*public JFrame getParentWindow() {
- return parentWindow;
- }*/
-
- private void readConfig(Node node){
-
- //Get a list of subnodes
- NodeList children = node.getChildNodes();
-
- //Loop over all subnodes
- for (int i = 0; i < children.getLength(); i++) {
- Node child = children.item(i);
- //Check wether subnode is a Window or a Layout
- if (child.getNodeType() == Node.ELEMENT_NODE) {
- String nodeName = child.getNodeName();
- //Add a Window or a layout
- if (nodeName.equals("UsedWindow")) readWindow(child);
- else if (nodeName.equals("Layout")) readLayout(child);
- }
- }
-
- // reading all the attributes of Canvas node
- NamedNodeMap attributes = node.getAttributes();
- // The startupLayout:
- startupLayoutName = attributes.getNamedItem("startupLayout").getNodeValue().trim();
-
- // Aspect ratio stuff:
- oldaspect = Double.NaN;
- Node n = attributes.getNamedItem("aspectRatio");
-
- if (n != null) {
- oldaspect = Double.parseDouble(
- attributes.getNamedItem("aspectRatio").getNodeValue().trim());
- }
-
- logger.debug("Read config file with aspectRatio: " + oldaspect);
- }
-
- //Read window configuration
- private void readWindow(Node node) {
- AWindow w = AWindow.createFromXMLConfigNode(node, getWindowsCount());
-
- if (!windowsList.containsKey(w.getName())) {
- windowsList.put(w.getName(), w);
- } else
- throw new Error("Redefinition of window: " + w.getName());
- }
-
- //Read layout configuration
- private void readLayout(Node node) {
- ALayout layout = new ALayout(node);
-
- if (!layouts.containsKey(layout.getName()))
- layouts.put(layout.getName(), layout);
- else
- throw new Error("Redefinition of layout: " + layout.getName());
- }
-
- //Read window corners
- public void readCorners(Node corners) {
- if (corners == null)
- return;
- //Set flag to set default corners
- customisedCorner = true;
- //Get list of corners
- NodeList children = corners.getChildNodes();
- //Loop over corners
- for (int i = 0; i < children.getLength(); i++) {
- Node corner = children.item(i);
- if (corner.getNodeType() == Node.ELEMENT_NODE) {
- //Get corner attributes
- NamedNodeMap attributes = corner.getAttributes();
- String windowName = AXMLUtils.tryAttribut(attributes, "windowName");
- double x0 = Double.parseDouble(AXMLUtils.tryAttribut(attributes, "x0"));
- double y0 = Double.parseDouble(AXMLUtils.tryAttribut(attributes, "y0"));
- double x1 = Double.parseDouble(AXMLUtils.tryAttribut(attributes, "x1"));
- double y1 = Double.parseDouble(AXMLUtils.tryAttribut(attributes, "y1"));
- double x2 = Double.parseDouble(AXMLUtils.tryAttribut(attributes, "x2"));
- double y2 = Double.parseDouble(AXMLUtils.tryAttribut(attributes, "y2"));
- //Create an array with new window corners
- Point2D.Double[] c = new Point2D.Double[] { new Point2D.Double(x0, y0), new Point2D.Double(x1, y1), new Point2D.Double(x2, y2) };
- //Set the corners for this window
-
- getWindow(windowName).setUserCorners(c);
- }
- }
- customisedCorner = false;
- }
-
-
- //Finalize the canvas construction
- public void finalizeConstruction() {
- parameterStore = APar.instance();
-
- if (!parameterStore.get("Prefs", "CanvasTitle").getStatus()) {
- title.setVisible(false);
- }
-
- //Bring the startup layout on screen
- setCurrentLayout(startupLayoutName);
- }
-
- public void addOverlay() {
-
- AOverlay overlay = new AOverlay();
- if(parentWindow != null)
- parentWindow.setGlassPane(overlay);
- overlay.setVisible(true);
- }
-
- public void correctAspectRatios() {
-
- // If we didn't have a saved aspect ratio or didn't know it when
- // the config was written
- if (Double.isNaN(oldaspect)) {
- return;
- }
-
- // Only correct aspect ratio for the full screen layout, the other
- // layouts have fixed aspect ratios and should always be okay
- if (!currentLayout.getName().equals("FULL SCREEN")) {
- return;
- }
-
- // If aspect ratios are the same, we can stop
- if (java.lang.Math.abs(getAspectRatio() - oldaspect) < 1e-2) {
- logger.debug("Aspect ratio of config file same as this display, no correction required");
- return;
- }
-
- logger.info("Aspect ratio of config file (" + oldaspect + ") does not match this display (" + getAspectRatio() + ") attempting to correct");
-
- // Else, iterate over all windows
- Iterator<AWindow> it = windowsList.values().iterator();
- while(it.hasNext()) {
- AWindow w = (AWindow)(it.next());
- AProjection p = w.getProjection();
- if (p instanceof AProjection2D) {
- ((AProjection2D)p).aspectRatioChange(w, oldaspect, getAspectRatio());
- }
- }
- }
-
- /**
- * Mimics the behavior of a normal canvas paint, but with the canvas scaled to a predefined size.
- * @param g Graphics object to draw on
- * @param imageWidth width of the image
- * @param imageHeight height of the image
- * @param type extension of image
- */
- public void drawScaledCanvas(Graphics g, int imageWidth, int imageHeight, String type)
- {
- //hide red ZMR center dot
- AZMRInteraction.setPaintCenterDot(false);
-
- //anti-alias pictures by default
- boolean aastatus = APreferencesControl.getAliasMenuItem();
- if(!aastatus)
- APreferencesControl.setAliasMenuItem(true);
-
- // Calculate the scale factors.
- double factorX = ((double)imageWidth) / (double)getWidth();
- double factorY = ((double)imageHeight) / (double)getHeight();
-
- // Add the title bar, if required.
- if (title != null && parameterStore.get("Prefs", "CanvasTitle").getStatus()) {
-
- //Get old dimensions
- int titleWidth = title.getWidth();
- int titleHeight = title.getHeight();
-
- if (AGlobals.isAtlantisHeadless()) {
- Dimension d = title.getLayout().preferredLayoutSize(title);
- titleWidth = (int)d.getWidth();
- titleHeight = (int)d.getHeight();
- }
-
- //Scale to image width (height is constant) and draw
- title.setSize(imageWidth, titleHeight);
- title.paint(g);
- //restore old
- title.setSize(titleWidth, titleHeight);
- g.translate(0, titleHeight);
- //Re-adjust y-scale for title height
- factorY = ((double)(imageHeight-titleHeight))/(double)getHeight();
- }
-
- // Loop over all windows.
- String[] windows = getCurrentLayout().getWindowNames();
- for (int i=0; i<windows.length; i++)
- {
- AWindow window = getWindow(windows[i]);
- int x = window.getX();
- int y = window.getY();
- int width = window.getWidth();
- int height = window.getHeight();
- // If the window is visible resize it temporarily and then draw it.
- if (isReallyOnScreen(window)){
-
- g.translate((int)(factorX*x), (int)(factorY*y));
-
- // Perhaps I should override window.setSize to automatically validate
- // This is because AWindow is now a container with a view inside
- // - Adam
- window.setSize((int)(factorX*width), (int)(factorY*height));
- window.validate();
-
- // Needed in headless mode because normally components don't
- // do layout until they're really drawn
- if (AGlobals.isAtlantisHeadless()) {
- window.getLayout().layoutContainer(window);
- window.invalidateQuietly();
- }
-
- //Now print the actual windows
- window.print(g);
-
- // Show ATLAS logo only on the top left window if there's
- // enough room and if the checkbox is selected
- if(x == 0 && y == 0 && (imageWidth > 300 || imageHeight > 250) &&
- APreferencesControl.getAtlasLogoMenuItem()){
- g.drawImage(ACursorFactory.getInstance().getAtlasLogo(),32,4,null);
- }
- //reset old dimensions
- window.setSize(width, height);
- window.validate();
- g.translate(-(int)(factorX*x), -(int)(factorY*y));
- }
- }
-
- // Overlay does not work in XMLRPC mode (no parentWindow)
- if (this.parentWindow != null) {
- //get the overlay, resize to our desired canvas size, draw it, then set it back to normal
- AOverlay overlay = (AOverlay) this.parentWindow.getGlassPane();
- int width = overlay.getWidth();
- int height = overlay.getHeight();
- overlay.setSize(imageWidth, imageHeight);
- overlay.paintComponent(g);
- overlay.setSize(width, height);
- }
-
- //do reset
- AZMRInteraction.setPaintCenterDot(true);
- if(!aastatus)
- APreferencesControl.setAliasMenuItem(aastatus);
- }
-
-
- //Restore canvas defaults
- public void restoreDefaults() {
- //Current layout should never be null
- if (currentLayout != null) {
- if (!currentLayout.getName().equals(startupLayoutName)) {
- setCurrentLayout(startupLayoutName);
- }
- String[] frontWindows = currentLayout.getStartupSequence();
- String[] windows = this.getKnownWindowNames();
- for (String window : windows) windowsList.get(window).restoreDefaults();
- for (String window : frontWindows) this.moveToFrontWindow(window);
- setCurrentWindow(currentLayout.getStartupWindow());
- } else
- throw new Error("Current layout is not defined");
-
- // If an aspect ratio correction took place when we loaded this config
- // make sure it is reapplied on a reset - AD
- correctAspectRatios();
- }
-
- /*
- * Return a string containing the list of currently visible windows
- * that is then written to the config file by AConfigWriter
- */
- public String getStartupString() {
- StringBuilder s = new StringBuilder();
- //Loop over all windows in all layers
- int maxLayer = baseLayer + currentLayout.getWindowNames().length;
- for (int i = baseLayer; i <= maxLayer; i++) {
- Component[] c = layeredPane.getComponentsInLayer(i);
- for (int j = 0; j < c.length; j++)
- if (c[j] instanceof AWindow)
- if (isReallyOnScreen((AWindow) c[j]))
- s.append(((AWindow) c[j]).getName());
- }
- return s.toString();
- }
-
- /*
- * Bring this window to the front, i.e. make it the topmost window
- */
- public void moveToFrontWindow(String windowName) {
- //Make sure the window exists
- if (windowsList.containsKey(windowName)) {
- //Get the window
- AWindow w = windowsList.get(windowName);
- //Get the current layer of the window
- int layer = JLayeredPane.getLayer(w);
- //Get the other components int the same layer
- Component[] cc = layeredPane.getComponentsInLayer(layer);
- //Check for the current uppermost window
- int maxLayer = baseLayer + currentLayout.getWindowNames().length;
-
- //Now loop over all layers above the one the object is in
- for (int i = layer + 1; i <= maxLayer; i++) {
- //Get all components from this layers
- Component[] c = layeredPane.getComponentsInLayer(i);
- //Move them down one layer
- for (int j = 0; j < c.length; j++)
- layeredPane.setLayer(c[j], i - 1);
- }
- //Finaly move all component from the current layer to the top
- for (int j = 0; j < cc.length; j++)
- layeredPane.setLayer(cc[j], maxLayer);
- //validate and repaint
- this.validate();
- if (!w.isVisible()) {
- w.setVisible(true);
- }
- hideNonVisible();
- w.repaintFromScratch();
- } else
- throw new Error("Cannot find window: " + windowName);
- }
-
- /*
- * Return window by name
- */
- public AWindow getWindow(String windowName) {
- //Search for the window in the list an return it
- if (windowsList.containsKey(windowName))
- return (AWindow) windowsList.get(windowName);
- else
- throw new Error("Cannot find window: " + windowName);
- }
-
- /*
- * Repaint all but the current window
- * Used to update SynchroCursor in all windows.
- */
- public void repaintOthers(Component current) {
- //Fill all windows in an enumeration object
- Enumeration<AWindow> myenum = windowsList.elements();
-
- //Loop over windows
- while (myenum.hasMoreElements()) {
- AWindow window = (AWindow) myenum.nextElement();
- //repaint those that are visible
- if ((window != current) && this.isReallyOnScreen(window))
- window.repaint();
- }
- }
-
- private void hideNonVisible() {
- for (AWindow window : windowsList.values()) {
- if (this.isValidWindowName(window.getName())) {
- if (!this.isReallyOnScreen(window)) {
- if (window.isVisible()) {
- window.setVisible(false);
- }
- }
- }
- }
- }
-
- /*
- * Repaint all windows from Scratch
- */
- public void repaintAllFromScratch() {
- Enumeration<AWindow> myenum = windowsList.elements();
-
- hideNonVisible();
-
- while (myenum.hasMoreElements()) {
- AWindow window = (AWindow) myenum.nextElement();
-
- if (this.isReallyOnScreen(window)) {
- if (!window.isVisible()) {
- window.setVisible(true);
- }
- window.repaintFromScratch();
- }
- }
- title.repaint();
- }
-
- /*
- * Return a string will the names of all layouts
- * to be shown in the layout dialog
- */
- public String[] getLayoutNames() {
- Enumeration<String> myenum = layouts.keys();
- String[] s = new String[layouts.size()];
- //Loop over all layouts and concatenate their names
- for (int i = 0; i < s.length; i++)
- s[i] = (String) myenum.nextElement();
-
- return s;
- }
-
- /*
- * Get Layout by name
- */
- public ALayout getLayout(String name) {
- if (layouts.containsKey(name))
- return layouts.get(name);
- else
- throw new Error("getLayout, unknown: " + name);
- }
-
- /*
- * Return the current layout
- */
- public ALayout getCurrentLayout() {
- return currentLayout;
- }
-
- /*
- * Set the current layout and apply the changes right away
- */
- public void setCurrentLayout(String newLayout) {
- //Make sure the new layout exists
- if (layouts.containsKey(newLayout)) {
-
- //get current layout and its dimension
- currentLayout = layouts.get(newLayout);
- Dimension dim = currentLayout.getSize();
-
- // clear the frame
- setLayout(null);
- removeAll();
- layeredPane.removeAll();
-
- //Toolkit is not aware of multi-screens, but "adds them all together".
- // Dimension ScreenSize = Toolkit.getDefaultToolkit().getScreenSize();
- //getMaxWindowBounds gets max bounds, again added up over multiple screens. In contrast to the above,
- //it will account for MenuBars, StatusBars, etc from the the WindowManager
- // Rectangle ScreenSize = GraphicsEnvironment.getLocalGraphicsEnvironment().getMaximumWindowBounds();
- //This is how to get the default screen, we should rather use the one we are on
- // GraphicsEnvironment genv = GraphicsEnvironment.getLocalGraphicsEnvironment();
- // GraphicsDevice gscreen = genv.getDefaultScreenDevice();
- // GraphicsConfiguration gconf = gscreen.getDefaultConfiguration();
-
- //Final total Width, Height and position of the Canvas
- int W, H, X, Y;
-
- //First get the screen size of the current screen
- Rectangle ScreenSize = getScreenSize();
-
- //This is not a real full screen mode, rather a maximised Window mode.
- //In proper full screen, some window managers (such as Cacao) will allow
- //to have the title bar/menues disappear, etc.
- if(newLayout.equals("FULL SCREEN")) {
- //Really take the full screen in this mode
- W = ScreenSize.width;
- H = ScreenSize.height;
- X = ScreenSize.x;
- Y = ScreenSize.y;
- } else {
- //if not full screen then have to take account of task bars
- //First gets the insets (borders) from all sides
- Insets borders = new Insets(0, 0, 0, 0);
- if (!AGlobals.isAtlantisHeadless()) {
- borders = Toolkit.getDefaultToolkit()
- .getScreenInsets(parentWindow.getGraphicsConfiguration());
- }
- //calculate new usable screen size
- ScreenSize.width -= borders.left+borders.right;
- ScreenSize.height -= borders.top+borders.bottom;
- ScreenSize.x += borders.left;
- ScreenSize.y += borders.top;
-
- W = (int) (ScreenSize.width * SCREEN_USAGE);
- H = ScreenSize.height;
- X = ScreenSize.x;
- Y = ScreenSize.y;
- }
-
- //Apply the new layout dimensions
- layeredPane.setLayout(new AGridLayout(dim, null));
-
- //Now check for the existing windows
- String[] usedWindowNames = currentLayout.getWindowNames();
-
- //Loop over windows and add them to the new layout
- for (int i = 0; i < usedWindowNames.length; i++) {
- //Get the window dimensions
- Rectangle constraint = currentLayout.getWindowConstraints(usedWindowNames[i]);
- //Get the window itself
- AWindow window = windowsList.get(usedWindowNames[i]);
- //Make sure its finalized
- if (!window.finalized) {
- window.finalizeConstruction();
- }
- //Add window to a new layer with the given dimensions
- layeredPane.setLayer(window, baseLayer + i);
- layeredPane.add(window, constraint);
- }
- // adding the layeredPane to the frame
- setLayout(new BorderLayout());
- add(layeredPane);
-
- if (parentWindow != null) {
- //Set the new window dimensions and position
- parentWindow.setLocation(X, Y);
- parentWindow.setSize(W, H);
-
- //Validate and update
- parentWindow.validate();
- parentWindow.repaint();
-
- } else {
-
- // This is real voodoo to make the canvas lay itself out in the
- // right way in headless mode
- // It seems that because there's no repaint events things like
- // layouts often don't work in the way you expect. I'm fully
- // willing to believe I don't understand the best way to do this.
- // This is rather a scattergun approach that seems to work...
- // - Adam
-
- setSize(W, H);
- layeredPane.setSize(W, H);
-
- Dimension d = layeredPane.getLayout().preferredLayoutSize(layeredPane);
-
- validate();
- repaint();
-
- setSize(d);
- layeredPane.setSize(d);
- layeredPane.getLayout().layoutContainer(layeredPane);
- }
-
- fireLayoutChange();
-
- //Now apply window ordering
- String[] ss = currentLayout.getStartupSequence();
- for (int i = 0; i < ss.length; i++) this.moveToFrontWindow(ss[i]);
-
- //Finally set the current window to the same it was before, if it exists
- if ((currentWindow != null) && (currentLayout.hasWindow(currentWindow.getName())))
- setCurrentWindow(currentWindow.getName());
- else
- setCurrentWindow(currentLayout.getStartupWindow());
- } else
- throw new Error("setCurrentLayout: unknown layout name !?");
- }
-
- /*
- * Inform everyone on the LayoutChangeListener list about the layout change
- */
- private void fireLayoutChange() {
- for (ALayoutChangeListener changeListener : layoutChangeListeners) {
- changeListener.layoutChanged(getCanvas());
- }
- }
-
- /*
- * Store the current layout in the stack
- * This is need for layout history, used by e.g. "Zoom/Unzoom LAr/Calorimeters"
- */
- public void saveLayout() {
- //Add the current layout and active window name
- windowLayoutHistory.push(getCurrentLayout());
- windowNameHistory.push(currentWindow.getName());
-
- //Also store all windows that are actually on screen
- Vector<String> windowsOnScreen = new Vector<String>();
- String[] usedWindowNames = currentLayout.getWindowNames();
- for (String windowName : usedWindowNames) {
- AWindow window = windowsList.get(windowName);
- if(isReallyOnScreen(window)) {
- windowsOnScreen.add(windowName);
- }
- }
- windowsActive.push(windowsOnScreen);
- }
-
- /*
- * Revert to the previous layout in the layout history
- */
- void unlayout() {
- //Make sure there is a previous one
- if(windowLayoutHistory.size() > 0) {
- //Get the old layout and active window
- ALayout newLayout=windowLayoutHistory.pop();
- String windowName=windowNameHistory.pop();
- //Only change layout if it has actually changed
- if(!newLayout.getName().equals(currentLayout.getName())) {
- //Set new layout and current window
- setCurrentLayout(newLayout.getName());
- setCurrentWindow(windowName);
- }
- //now bring windows in the proper order
- Vector<String> windowsOnScreen = windowsActive.pop();
-
- for (String winName : windowsOnScreen) {
- this.moveToFrontWindow(winName);
- }
- }
- }
-
- /*
- * Add objects that shall be informed if there is a change in the lock status
- */
- public void addLockChangeListener(ChangeListener listener) {
- lockChangeListeners.addElement(listener);
- listener.stateChanged(new ChangeEvent(this));
- }
- /*
- * Add objects that shall be informed if there is a change in the layout
- */
- public void addLayoutChangeListener(ALayoutChangeListener listener) {
- layoutChangeListeners.addElement(listener);
- listener.layoutChanged(getCanvas());
- }
-
- /*
- * Add objects that shall be informed if there is a
- * change in the current window
- */
- public void addWindowChangeListener(ChangeListener listener) {
- windowChangeListeners.addElement(listener);
- listener.stateChanged(new ChangeEvent(this));
- }
-
- /*
- * Check if the given window name exists in the list of windows
- */
- public boolean isValidWindowName(String name) {
- return windowsList.containsKey(name);
- }
-
- /*
- * Get a string with all the existing windows
- */
- public String[] getKnownWindowNames() {
- Set<String> windowNames = windowsList.keySet();
- return windowNames.toArray(new String[windowNames.size()]);
- }
-
- /*
- * Returns the name of the current window
- */
- public String getCurrentWindowName() {
- return currentWindow.getName();
- }
-
- /*
- * Return the current window
- */
- public AWindow getCurrentWindow() {
- return currentWindow;
- }
-
- /*
- * Return the window we are currently painting in
- */
- public AWindow getPaintingWindow() {
- return paintingWindow;
- }
-
- /*
- * Notify everyone about a change in the active window
- */
- private void fireWindowChange() {
- ChangeEvent changeEvent = new ChangeEvent(this);
- for (ChangeListener changeListener : windowChangeListeners) {
- changeListener.stateChanged(changeEvent);
- }
- }
-
- /*
- * Notify everyone about a change in the lock status
- */
- void fireLockChange() {
- ChangeEvent changeEvent = new ChangeEvent(this);
- for (ChangeListener changeListener : lockChangeListeners) {
- changeListener.stateChanged(changeEvent);
- }
- }
-
- /*
- * Get number of windows
- */
- public int getWindowsCount() {
- return windowsList.size();
- }
-
- /**
- * Sets the current window. Informs all registered listeners.
- *
- * @param newWindowName The name of the window to be set to current.
- */
- public void setCurrentWindow(String newWindowName) {
- //Make sure window does exist
- if (windowsList.containsKey(newWindowName)) {
- //Deselect the current window
- if (currentWindow != null) currentWindow.deselect();
- //Get the new window
- currentWindow = (AWindow) windowsList.get(newWindowName);
- //Select it
- currentWindow.select();
- //Inform APar class about the new current window
- parameterStore.setCurrentWindowIndex(currentWindow.getIndex());
- //Move the current window on top of all others
- moveToFrontWindow(currentWindow.getName());
- //Inform everyone about the change
- fireWindowChange();
- } else
- throw new Error("setCurrentWindow, window: " + newWindowName + " , doesn't exist !?");
- }
-
- /**
- * Sets the currently window currently being painted
- *
- * @param window the window being painted
- */
- public void setPaintingWindow(AWindow window) {
- paintingWindow = window;
- }
-
- /**
- * Copy settings from one window to another window
- *
- * @param from the window to copy settings from
- * @param to the window to copy settings to
- */
- public void copyWindowSettings(String from, String to) {
- AWindow fromW = getWindow(from);
- AWindow toW = getWindow(to);
-
- parameterStore.copyParameters(from, to);
-
- // IMPORTANT! Do not change the order
- // setCurrentWindow() should be always before setProjection()
- setCurrentWindow(to);
-
- // copy the projection, group and scales
- toW.setProjection(fromW.getProjection());
- toW.setGroup(fromW.getGroupName());
- toW.setScaleStatus(fromW.getScaleStatus());
-
- // copy the interaction (no interactions valid for EventInfo projection)
- if(!(fromW.getProjection() instanceof AProjectionEventInfo))
- {
- AInteractionToolBar fromI = fromW.getInteractionToolBar();
- AInteractionToolBar toI = toW.getInteractionToolBar();
-
- toI.setSelectedGroup(fromI.getSelectedGroupName());
- // copy the state of the panel
- toI.getSelectedGroup().setGroupState(fromI.getSelectedGroup());
- }
- // for LegoPlot windows we need to set the (x,y,z)-corners from the projection
- // TODO: Check and understand this. Previously there was no check that toW was
- // an instance of AProjectionLegoPlot, put perhaps this works because only
- // ever copy settings from one projection to another of the same type?
- if(fromW.getProjection() instanceof AProjectionLegoPlot
- && toW.getProjection() instanceof AProjectionLegoPlot) {
- AProjectionLegoPlot.setxz(toW.getIndex(), AProjectionLegoPlot.getxz(fromW.getIndex()));
- AProjectionLegoPlot.setyz(toW.getIndex(), AProjectionLegoPlot.getyz(fromW.getIndex()));
- //reset the center of detector dot on ZMR
- toW.getInteractionManager().setContext(toW.getInteractionToolBar().getSelectedGroup());
- }
- //copy the user corners
- toW.setUserCorners(fromW.getUserCorners());
- }
-
- /**
- * As each window has its own layer, find the window that is in this window
- *
- * @param layer the layer which the window is in
- */
- private AWindow getWindowForLayer(int layer) {
- //Get all the components in this layer
- Component[] c = layeredPane.getComponentsInLayer(layer);
- //Return the first instance of AWindow
- for (int i = 0; i < c.length; i++)
- if (c[i] instanceof AWindow) return (AWindow) c[i];
- //Otherwise return 0
- return null;
- }
-
- /**
- * Get the associated tile menu bar
- */
- public ATitleMenuBar getATitle() {
- return title;
- }
-
- /**
- * Get the top-most window at a certain point
- *
- * @param x x-coordinate in pixels
- * @param y y-coordinate in pixels
- */
- private AWindow getWindowForPoint(double x, double y) {
- //Loop over all layers
- int maxLayer = baseLayer + currentLayout.getWindowNames().length;
- for (int lay = maxLayer; lay >= 0; lay--) {
- //Get the window that is in this layer
- AWindow w = getWindowForLayer(lay);
- if (w == null || currentLayout == null) {
- continue;
- }
- //Get the window rectangle
- Rectangle r = currentLayout.getWindowConstraints(w.getName());
- //Check if x,y is inside the rectangle
- if (r.contains(x, y))
- return w;
- }
-
- return null;
- }
-
- /**
- * Check if a given window is partially visible
- *
- * @param window the window to check
- */
- public boolean isReallyOnScreen(AWindow window) {
- //The full area covered by the canvas
- Dimension layoutSize = currentLayout.getSize();
-
- //Run over every single point on the canvas
- //until we hit one that belongs to the window -- aaaaaarrrrggghhh!!! (SB?)
-
- //This function almost always exits on the first pixel
- //Profiling indicates it takes only a few miliseconds
- //even in very rare worst cases - AD
- for (int j = 0; j < layoutSize.height; j++)
- for (int i = 0; i < layoutSize.width; i++)
- if (getWindowForPoint(i + 0.5, j + 0.5).equals(window))
- return true;
-
- return false;
- }
-
- /**
- * Implementation of the new event listener: gets called for each new event
- * and repaints all the windows.
- *
- * @param evt the new event
- */
- @Override
- public void newEvent(AEvent evt) {
- repaintAllFromScratch();
- }
-
- /** Return the aspect ratio of the canvas drawing area (hopefully) as h/w.
- * Sorry if this is usually defined as w/h? - AD */
- public double getAspectRatio() {
- Dimension d = layeredPane.getSize();
- return d.getHeight() / d.getWidth();
- }
-
- /**
- * Calculates the image height that will result if one resizes the current canvas to the given width.
- * @param width target width
- * @return corresponding height
- */
- public int getRespectiveHeight(int width){
-
- //Get rootpane dimensions
- int canvasWidth = getWidth();
- int canvasHeight = getHeight();
-
- //calculate factor
- double factor = ((double)width) / canvasWidth;
-
- //Account for menu bar if its there
- if (title != null && parameterStore.get("Prefs", "CanvasTitle").getStatus()) {
- //if (getTitleBar() != null && getTitleBar().isVisible()){
- int height = title.getHeight();
-
- if (AGlobals.isAtlantisHeadless()) {
- // In headless mode the menu bar isn't really enabled
- // So get the size it would be if it was
- height = (int) (title.getLayout().preferredLayoutSize(title).getHeight());
- }
-
- return (int) (factor * canvasHeight) + height;
-
- }
-
- //Otherwise just scale
- return (int)(factor*canvasHeight);
- }
-
-} //ACanvas
diff --git a/graphics/AtlantisJava/src/atlantis/canvas/ADrawCalorimeterSummedEndcaps.java b/graphics/AtlantisJava/src/atlantis/canvas/ADrawCalorimeterSummedEndcaps.java
deleted file mode 100755
index c7b6a307a49..00000000000
--- a/graphics/AtlantisJava/src/atlantis/canvas/ADrawCalorimeterSummedEndcaps.java
+++ /dev/null
@@ -1,937 +0,0 @@
-package atlantis.canvas;
-
-import java.awt.Color;
-
-import atlantis.data.ACalorimeterData;
-import atlantis.geometry.ACalorimeterDetector;
-import atlantis.graphics.ACoord;
-import atlantis.graphics.ADrawParameters;
-import atlantis.graphics.AGraphics;
-import atlantis.graphics.colormap.AColorMap;
-import atlantis.parameters.APar;
-import atlantis.parameters.AParameter;
-import atlantis.projection.AProjection2D;
-import atlantis.projection.AProjectionFR;
-import atlantis.utils.AMath;
-import atlantis.utils.APolygon;
-
-/**
- * Contains the function for drawing the summed LAr and HEC endcaps
- *
- * @author Mark Stockton
- */
-public class ADrawCalorimeterSummedEndcaps
-{
- static int minEtaIndex,minPhiIndex,maxEtaIndex,maxPhiIndex,numCombinedCells,binvalue=1,SmallestEtaBinNumber,LargestEtaBinNumber;
- static double etaBin, phiBin, SmallestZMin,maxCellEnergy,minCellEnergy;
- static String name;
-
- protected static APar parameterStore = APar.instance();
-
- /**
- * Draws the summed endcaps. This method is called
- * from drawCalorimeters and should not be used directly.
- *
- * @param window AWindow window to use
- * @param ag AGraphics graphics object to draw onto
- * @param projection AProjection2D current projection
- * @param calorimeter ACalorimeterData current calorimeter
- * @param etaIndex short[] index of eta values
- * @param phiIndex short[] index of phi values
- * @param side byte[] side of detector
- */
- public static void drawCalorimeterSummedEndcaps(AWindow window, AGraphics ag, AProjection2D projection, ACalorimeterData calorimeter, short[] etaIndex, short[] phiIndex, byte[] side)
- {
- resetGlobalValues(calorimeter.getName());
- ACoord data;
- double[][] EndcapBinnedEnergy = new double[(36/binvalue)][(64/binvalue)];
- calorimeter.makeDrawList();
- //loop over drawlist to find z of first plane and smallest and largest eta
- setSmallestAndLargest(calorimeter);
- //now loop over drawlist to draw
- for (int k = 0; k < calorimeter.getNumDraw(); k++)
- {
- int j = calorimeter.getDrawIndex(k);
- short detectorIndex = (short) ACalorimeterDetector.getDetectorIndex(calorimeter.getIdFromIndex(j));
- ACalorimeterDetector currentDetector=ACalorimeterDetector.get(detectorIndex);
- if (detectorIndex >= 0)
- {
- ACoord coord = currentDetector.getCell(projection, etaIndex[j], phiIndex[j], side[j]);
- if (coord.hv[0].length > 0)
- {
- //has a cell so get its energy
- double cellEnergy=calorimeter.getEnergy(j);
- //find the eta min and max of each cell
- double[] etaminmax=findEtaMinAndMax(currentDetector,etaIndex[j],side[j]);
- //test to see if the cell overlaps the eta border
- if(etaminmax[2]==1)
- {
- //Only want cells upto the eta split
- double middle=parameterStore.get("YX", "SplitEta").getD()-(0.5*etaBin);
- //find the min and max of each cell
- double[] minmax1=findMinAndMax(currentDetector,etaminmax[0],middle,phiIndex[j]);
- //has to find out how many cells overlap new binning border
- int totNumOfCells1 =findNumberOfCells(minmax1);
- //Only want cells above the eta split
- middle=parameterStore.get("YX", "SplitEta").getD()+(0.5*etaBin);
- //find the min and max of each cell
- double[] minmax2=findMinAndMax(currentDetector,middle,etaminmax[1],phiIndex[j]);
- //has to find out how many cells overlap new binning border
- int totNumOfCells2 =findNumberOfCells(minmax1);
- //check found positive number of cells
- int NumOfCellsTotal=0;
- if(totNumOfCells1>0)
- NumOfCellsTotal+=totNumOfCells1;
- else
- System.out.println("Found negative amount of cells!?!");
- if(totNumOfCells2>0)
- NumOfCellsTotal+=totNumOfCells2;
- else
- System.out.println("Found negative amount of cells!?!");
- if(NumOfCellsTotal>0)
- {
- //split energy between the cells
- cellEnergy/=NumOfCellsTotal;
- //now add on energy
- if(totNumOfCells1>0)
- {
- EndcapBinnedEnergy=AddOnToEnergy(EndcapBinnedEnergy, cellEnergy, minmax1);
- }
- if(totNumOfCells2>0)
- {
- EndcapBinnedEnergy=AddOnToEnergy(EndcapBinnedEnergy, cellEnergy, minmax2);
- }
- }
- }
- else
- {
- //find the min and max of each cell
- double[] minmax=findMinAndMax(currentDetector,etaminmax[0],etaminmax[1],phiIndex[j]);
- //has to find out how many cells overlap new binning border
- int totNumOfCells =findNumberOfCells(minmax);
- //if found cells
- if(totNumOfCells>0)
- {
- //split energy between the cells
- cellEnergy/=totNumOfCells;
- //not overlapping eta split so just add on energy
- EndcapBinnedEnergy=AddOnToEnergy(EndcapBinnedEnergy, cellEnergy, minmax);
- }
- else
- System.out.println("Found negative amount of cells!?!");
- }
- }
- }
- }
- //if no cells then don't need to draw
- if(numCombinedCells==0)
- return;
- //now need to order energy into a list aswell as get the geometry of cells with energy
- double[] EndcapBinnedEnergyList;
- double[] YXBinnedEnergyList=new double[numCombinedCells];//needed as could be FR projection
- double[][][] YXhv=new double[2][numCombinedCells][0];
- int currentCount=0;
- for(int a=minEtaIndex; a<=maxEtaIndex;a++)
- {
- for(int b=minPhiIndex; b<=maxPhiIndex;b++)
- {
- if(EndcapBinnedEnergy[a][b]>0.0)
- {
- //has an energy so store its cell coordinates
- ACoord coord = calculateCellGeometry(a,b);
- YXhv[0][currentCount]=coord.hv[0][0];
- YXhv[1][currentCount]=coord.hv[1][0];
- //sorts energy into a list less blank cells
- YXBinnedEnergyList[currentCount]=EndcapBinnedEnergy[a][b];
- currentCount++;
- //check if is largest/smallest cell energy
- if(EndcapBinnedEnergy[a][b]>maxCellEnergy)
- maxCellEnergy=EndcapBinnedEnergy[a][b];
- if(EndcapBinnedEnergy[a][b]<minCellEnergy)
- minCellEnergy=EndcapBinnedEnergy[a][b];
- }
- }
- }
- //store coords and scale for display
- ACoord YXData = new ACoord(YXhv);
- //now need to alter to FR projection if needed otherwise will continue with temp
- if(projection instanceof AProjectionFR)
- {
- //convert data to FR and add data to loop in phi
- data=convertToFR(YXData, window);
- //now need to loop the energies
- EndcapBinnedEnergyList=new double[3*numCombinedCells];
- for(int j=0; j<numCombinedCells;j++)
- {
- EndcapBinnedEnergyList[j]=YXBinnedEnergyList[j];
- EndcapBinnedEnergyList[j+numCombinedCells]=YXBinnedEnergyList[j];
- EndcapBinnedEnergyList[j+(2*numCombinedCells)]=YXBinnedEnergyList[j];
- }
- numCombinedCells*=3;//now have 3 lots of cells
- }
- else
- {
- //If not FR then the YX values are correct
- EndcapBinnedEnergyList=YXBinnedEnergyList;
- data=YXData;
- }
- data = window.calculateDisplay(projection.nonLinearTransform(data));
- // Draw the cell frames
- boolean drawCells = parameterStore.get( name, "Cells").getStatus();
- if (drawCells)
- drawCells(window, ag, data, EndcapBinnedEnergyList);
- // Draw the histograms.
- ACalorimeterData.drawEndcapHistogram(calorimeter, window, ag, projection);
- }
-
- /**
- * Resets gobal values
- * @param CalName name of calorimeter
- */
- protected static void resetGlobalValues(String CalName)
- {
- name=CalName;
- minEtaIndex=999;
- minPhiIndex=999;
- maxEtaIndex=0;
- maxPhiIndex=0;
- numCombinedCells=0;
- SmallestZMin = 99999.0;
- SmallestEtaBinNumber = 99999;
- LargestEtaBinNumber = 0;
- maxCellEnergy=0.0;
- minCellEnergy = 99999.0;
- //check if using 0.1 binning or 0.2 binning
- if(name.equals("HEC"))
- binvalue = parameterStore.get("YX", "HECBin").getI();
- else
- binvalue = parameterStore.get("YX", "LArBin").getI();
- if(binvalue==3)
- {
- etaBin=0.1;
- phiBin=(2*Math.PI/64);
- binvalue=1;
- }
- else
- {
- etaBin=0.1*binvalue;
- phiBin=(2*Math.PI/64)*binvalue;//(2*Math.PI/64)=0.098
- }
- }
-
- /**
- * Set the smallest Z, smallest and largest eta
- *
- * @param calorimeter ACalorimeterData current calorimeter
- */
- protected static void setSmallestAndLargest(ACalorimeterData calorimeter)
- {
- double largestRho=0.0,smallestRho=99999.0;
- double largestEtaValue=0.0,smallestEtaValue=99999.0;
- //to shorten detectors to loop over
- short prevDetectorIndex=999;
- //loop over drawlist
- for (int k = 0; k < calorimeter.getNumDraw(); k++)
- {
- int j = calorimeter.getDrawIndex(k);
- short detectorIndex = (short) ACalorimeterDetector.getDetectorIndex(calorimeter.getIdFromIndex(j));
- ACalorimeterDetector currentDetector=ACalorimeterDetector.get(detectorIndex);
- String detectorName=currentDetector.getName();
- if (detectorIndex!=prevDetectorIndex && detectorIndex >= 0
- && (detectorName.indexOf("Endcap")>0 || detectorName.indexOf("EC")>=0 || detectorName.equals("HEC")))
- {
- //in a different detector
- prevDetectorIndex=detectorIndex;
- //find z of the first plane
- if(currentDetector.getZMin()<SmallestZMin)
- {
- SmallestZMin=currentDetector.getZMin();
- }
- //find smallest rho
- if(currentDetector.getRMin()<smallestRho)
- {
- smallestRho=currentDetector.getRMin();
- largestEtaValue=AMath.etaAbs(currentDetector.getZMin(), smallestRho);
- }
- //find largest rho
- if(currentDetector.getRMax()>largestRho)
- {
- largestRho=currentDetector.getRMax();
- smallestEtaValue=AMath.etaAbs(currentDetector.getZMin(), largestRho);
- }
- }
- }
- //if drawing cell outlines then this will have already been done
- if (splitBinning() && !parameterStore.getUnknown("Det", "CaloDetail").getStatus())
- ACalorimeterDetector.setEtaSplit();
- //if using split binning and eta is in inner section
- if(splitBinning() && smallestEtaValue>=parameterStore.get("YX", "SplitEta").getD())
- {
- double belowSplit=parameterStore.get("YX", "SplitEta").getD()/0.1;
- double aboveSplit=(smallestEtaValue-parameterStore.get("YX", "SplitEta").getD())/0.2;
- SmallestEtaBinNumber=(int)Math.floor(belowSplit+aboveSplit);
- }
- else
- {
- SmallestEtaBinNumber=(int)Math.floor(smallestEtaValue/etaBin);
- }
- if(splitBinning() && largestEtaValue>=parameterStore.get("YX", "SplitEta").getD())
- {
- double belowSplit=parameterStore.get("YX", "SplitEta").getD()/0.1;
- double aboveSplit=(largestEtaValue-parameterStore.get("YX", "SplitEta").getD())/0.2;
- LargestEtaBinNumber=(int)Math.floor(belowSplit+aboveSplit);
- }
- else
- {
- LargestEtaBinNumber=(int)Math.floor(largestEtaValue/etaBin);
- }
- }
-
- /**
- * Test to see if using split binning
- *
- * @return Status of if using split binning
- */
- protected static boolean splitBinning()
- {
- int test=0;
- if(name.equals("HEC"))
- test = parameterStore.get("YX", "HECBin").getI();
- else
- test = parameterStore.get("YX", "LArBin").getI();
- if(test==3)
- return true;
- else
- return false;
- }
-
- /**
- * Finds the max and min values of the hit cell
- * Also tests and sets the min and max indicies for eta and phi
- *
- * @param currentDetector ACalorimeterDetector current detector
- * @param etaIndex short index of eta values
- * @param side byte side of detector
- *
- * @return minAndMax[0] double minEta of cell
- * @return minAndMax[1] double maxEta of cell
- * @return minAndMax[2] double status of if is an overlapping cell
- */
- protected static double[] findEtaMinAndMax(ACalorimeterDetector currentDetector, short etaIndex, byte side)
- {
- double realEtaBin=etaBin;
- //if using split binning and eta is in outer section
- if(splitBinning() && Math.abs(currentDetector.getEtaMin(etaIndex, side))>=parameterStore.get("YX", "SplitEta").getD())
- {
- realEtaBin=0.2;
- }
- //used for x when taking arsinh(x)=ln(x+sqrt(x*x+1))
- double asinhOf;
- //have to alter eta so can be drawn at the front layer
- double zFactor = SmallestZMin/currentDetector.getZMin();
- //do for minimum of cell
- double calcEtaMin=Math.abs(currentDetector.getEtaMin(etaIndex, side));
- asinhOf = zFactor*Math.sinh(calcEtaMin);
- calcEtaMin = Math.log(asinhOf + Math.sqrt(asinhOf*asinhOf+1));
- //do for center of cell
- double calcEta=Math.abs(currentDetector.getEta(etaIndex, side));
- asinhOf = zFactor*Math.sinh(calcEta);
- calcEta= Math.log(asinhOf + Math.sqrt(asinhOf*asinhOf+1));
- //find cell size in eta and phi
- double deta=currentDetector.getDeltaEta();
- double minEta,maxEta;
- //check for overlaping cells in eta and phi
- if(deta>realEtaBin)
- {
- minEta=calcEtaMin;
- maxEta=minEta+deta;
- }
- else
- {
- minEta=calcEta;
- maxEta=minEta;//there is only 1 cell
- }
-
- //make minEta in detector otherwise causes problems if SplitEta=SmallestEtaBinNumber*0.1
- if(minEta<SmallestEtaBinNumber*0.1)
- {
- minEta=SmallestEtaBinNumber*0.1;
- }
-
- //now store in variable to return
- double[] minAndMax=new double[3];
- minAndMax[0]= minEta;
- minAndMax[1]= maxEta;
-
- if(splitBinning())
- {
- if(minEta<parameterStore.get("YX", "SplitEta").getD() &&
- maxEta>parameterStore.get("YX", "SplitEta").getD())
- {
- minAndMax[2]=1;//overlapping cell
- }
- else
- minAndMax[2]=0;
- }
- else
- minAndMax[2]=0;
- return minAndMax;
- }
-
- /**
- * Finds the max and min values of the hit cell
- * Also tests and sets the min and max indicies for eta and phi
- *
- * @param currentDetector ACalorimeterDetector current detector
- * @param minEta double min eta of cell to draw
- * @param maxEta double max eta of cell to draw
- * @param phiIndex short index of phi values
- *
- * @return minAndMax[0] double minEta of cell
- * @return minAndMax[1] double maxEta of cell
- * @return minAndMax[2] double minPhi of cell
- * @return minAndMax[3] double maxPhi of cell
- */
- protected static double[] findMinAndMax(ACalorimeterDetector currentDetector, double minEta, double maxEta, short phiIndex)
- {
- double realEtaBin=etaBin, realPhiBin=phiBin;
- //if using split binning
- if(splitBinning())
- {
- //if eta is in inner section
- if(minEta>=parameterStore.get("YX", "SplitEta").getD())
- {
- realEtaBin=0.2;
- realPhiBin=(2*Math.PI/32);
- }
- }
- //find cell size in eta and phi
- double deta=currentDetector.getDeltaEta();
- double dphi=currentDetector.getDeltaPhi();
- double minPhi,maxPhi;
- //check for overlaping cells in eta and phi
- if(deta>realEtaBin)
- {
- if(realEtaBin==etaBin)
- {
- minEta=Math.floor(minEta/realEtaBin);
- maxEta=Math.floor(maxEta/realEtaBin);
- }
- else
- {
- //inside split binning
- double belowSplit=parameterStore.get("YX", "SplitEta").getD()/0.1;
- double aboveSplit=(minEta-parameterStore.get("YX", "SplitEta").getD())/0.2;
- minEta=Math.floor(belowSplit+aboveSplit);
- aboveSplit=(maxEta-parameterStore.get("YX", "SplitEta").getD())/0.2;
- maxEta=Math.floor(belowSplit+aboveSplit);
- }
- }
- else
- {
- if(realEtaBin==etaBin)
- {
- minEta=Math.floor(minEta/realEtaBin);
- }
- else
- {
- //split binning
- double belowSplit=parameterStore.get("YX", "SplitEta").getD()/0.1;
- double aboveSplit=(minEta-parameterStore.get("YX", "SplitEta").getD())/0.2;
- minEta=Math.floor(belowSplit+aboveSplit);
- }
- maxEta=minEta;//there is only 1 cell
- }
- if(dphi>realPhiBin)
- {
- minPhi=Math.abs(currentDetector.getPhiMin(phiIndex));
- minPhi=Math.floor(minPhi/realPhiBin);
- maxPhi=Math.floor(minPhi+(dphi/realPhiBin));
- }
- else
- {
- minPhi=Math.abs(currentDetector.getPhi(phiIndex));
- minPhi=Math.floor(minPhi/realPhiBin);
- maxPhi=minPhi;//there is only 1 cell
- }
- //check for exceeding array limits
- if(maxPhi>=(64/binvalue))
- {
- maxPhi=(64/binvalue)-1;
- if(minPhi>=(64/binvalue)-1)
- minPhi=(64/binvalue)-1;
- }
- if(minPhi<0)
- {
- minPhi=0;
- if(maxPhi<0)
- maxPhi=0;
- }
- //check not out of eta array size range
- if(maxEta>=(36/binvalue))
- {
- maxEta=(36/binvalue)-1;
- if(minEta>=(36/binvalue))
- minEta=(36/binvalue)-1;
- }
- //check physical eta conditions
- if(maxEta>LargestEtaBinNumber)
- {
- maxEta=LargestEtaBinNumber;
- if(minEta>LargestEtaBinNumber)
- minEta=LargestEtaBinNumber;
- }
- if(minEta<SmallestEtaBinNumber)
- {
- minEta=SmallestEtaBinNumber;
- if(maxEta<SmallestEtaBinNumber)
- maxEta=SmallestEtaBinNumber;
- }
- //find min and max eta and phi indices
- if(minEta<minEtaIndex)
- minEtaIndex=(int)minEta;
- if(maxEta>maxEtaIndex)
- maxEtaIndex=(int)maxEta;
- if(minPhi<minPhiIndex)
- minPhiIndex=(int)minPhi;
- if(maxPhi>maxPhiIndex)
- maxPhiIndex=(int)maxPhi;
- //now store in variable to return
- double[] minAndMax=new double[4];
- minAndMax[0]= minEta;
- minAndMax[1]= maxEta;
- minAndMax[2]= minPhi;
- minAndMax[3]= maxPhi;
- return minAndMax;
- }
-
- /**
- * Finds the number of cells in the new binning
- *
- * @param minmax array containing: minEta, maxEta, minPhi, maxPhi
- */
- protected static int findNumberOfCells(double[] minmax)
- {
- int numOfEtaCells=0;
- int numOfPhiCells=0;
- double minEta=minmax[0];
- double maxEta=minmax[1];
- double minPhi=minmax[2];
- double maxPhi=minmax[3];
- //calculate the number of cells
- //add one as difference in index is 1 less than number of cells
- numOfEtaCells+=maxEta-minEta+1;
- numOfPhiCells+=maxPhi-minPhi+1;
- //get total number of cells
- int totNumOfCells = numOfEtaCells*numOfPhiCells;
- return totNumOfCells;
- }
-
- /**
- * Adds on the energy to EndcapBinnedEnergy and then returns it
- *
- * @param EndcapBinnedEnergy double[][] energy listing of cells [eta][phi]
- * @param cellEnergy double energy of each new cell
- * @param minmax double[] min and max of cell in eta and phi
- *
- * @return EndcapBinnedEnergy double[][] altered energy listing of cells [eta][phi]
- */
- protected static double[][] AddOnToEnergy(double[][] EndcapBinnedEnergy, double cellEnergy, double[] minmax)
- {
- //now loop over the min to max for eta and phi
- for(int a= (int) minmax[0]; a<=(int) minmax[1]; a++)
- {
- for(int b=(int) minmax[2]; b<=(int) minmax[3]; b++)
- {
- //add to cell count if no energy already stored in cell
- if(EndcapBinnedEnergy[a][b]==0.0)
- numCombinedCells++;
- //add energy to cell
- EndcapBinnedEnergy[a][b]+= cellEnergy;
- }
- }
- return EndcapBinnedEnergy;
- }
-
- /**
- * Calculates the cell geometry from its eta and phi bin numbers
- *
- * @param a int eta bin number
- * @param b int phi bin number
- *
- * @return coord Acoord cell coords
- */
- protected static ACoord calculateCellGeometry(int a, int b)
- {
- double realEtaBin=etaBin, realPhiBin=phiBin;
- double eta=a*etaBin;
- double phi=b*phiBin;
- //if using split binning and eta is in inner section
- if(splitBinning() && eta>=parameterStore.get("YX", "SplitEta").getD())
- {
- realEtaBin=0.2;
- realPhiBin=(2*Math.PI/32);
- double belowSplit=parameterStore.get("YX", "SplitEta").getD()/0.1;
- double aboveSplit=a-belowSplit;
- eta=aboveSplit*0.2+belowSplit*0.1;
- phi=b*realPhiBin;
- }
- double[][] temphv = new double[2][];
-
- //all drawn on the front plane of the detector
- double newrMax=SmallestZMin/Math.sinh(eta);
- double newrMin=SmallestZMin/Math.sinh(eta+realEtaBin);
- //store the cell coords
- temphv[0] = new double[] {newrMax*Math.cos(phi), newrMax*Math.cos(phi+realPhiBin),
- newrMin*Math.cos(phi+realPhiBin), newrMin*Math.cos(phi)};
- temphv[1] = new double[] {newrMax*Math.sin(phi), newrMax*Math.sin(phi+realPhiBin),
- newrMin*Math.sin(phi+realPhiBin), newrMin*Math.sin(phi)};
- return new ACoord(temphv);
- }
-
- /**
- * Converts cells to FR using normal convertYXtoFR
- * Then adds on data above and below so loops in phi
- *
- * @param YXData ACoord data in YX projection
- * @param window AWindow current window
- *
- * @return coord Acoord cell coords
- */
- protected static ACoord convertToFR(ACoord YXData, AWindow window)
- {
- //convert to FR then have to loop data
- YXData.convertYXToFR();
- //new hv to store the values at + and - 2pi
- double[][][] FRhv=new double[2][3*numCombinedCells][YXData.hv[0][0].length];
- //get corners and then shift data to be inside corners
- double phiTop = window.getUserCorners()[0].y;
- double phiBottom = window.getUserCorners()[2].y;
- int factor=0;
- if(phiTop>720.0)
- //-2 as already draws upto 720 so doensn't need this extra 2*360
- factor=(int) Math.ceil(phiTop/360.0)-2;
- if(phiBottom<-360.0)
- //-1 as already draws down to -360 so doensn't need this extra -1*360
- factor=(int) Math.floor(phiBottom/360.0)-1;
- for(int j=0; j<numCombinedCells;j++)
- for(int k=0; k<YXData.hv[0][j].length; k++)
- {
- FRhv[1][j][k]=YXData.hv[1][j][k]+360.0*(factor-1);
- FRhv[1][numCombinedCells+j][k]=YXData.hv[1][j][k]+360.0*factor;
- FRhv[1][(2*numCombinedCells)+j][k]=YXData.hv[1][j][k]+360.0*(factor+1);
- FRhv[0][j][k]=YXData.hv[0][j][k];
- FRhv[0][numCombinedCells+j][k]=YXData.hv[0][j][k];
- FRhv[0][(2*numCombinedCells)+j][k]=YXData.hv[0][j][k];
- }
- //now store into data to be used to draw
- return new ACoord(FRhv);
- }
-
- /**
- * Draws the cells
- *
- * @param ag AGraphics graphics to draw on
- * @param data ACoord cell geometries
- * @param EndcapBinnedEnergyList double[] energy of each cell
- */
- protected static void drawCells(AWindow window, AGraphics ag, ACoord data, double[] EndcapBinnedEnergyList)
- {
- //Storage of parameters to be used later
- Color[] colorMap = AColorMap.getColors();
- //AParameter frame = parameterStore.get(name, "Frame");
- boolean drawFrame = parameterStore.get(name, "Frame").getStatus();
- int frameColor = parameterStore.get(name, "Frame").getI();
- //only draw frames for Grey/BW color maps if is selected to draw frames
- if(drawFrame && AColorMap.drawFrames())
- drawFrame=true;
- else
- drawFrame=false;
- AParameter cellGeometry = parameterStore.get(name, "CellGeometry");
- // Draw frames for the filled cells.
- if (drawFrame && cellGeometry.getStatus())
- {
- for (int j = 0; j < numCombinedCells; j++)
- {
- ag.setColor(colorMap[frameColor]);
- ag.drawPolygon(data.hv[0][j], data.hv[1][j], data.hv[0][j].length);
- }
- }
- // Draw the cell geometry.
- AParameter cellOutline = parameterStore.get(name, "CellOutline");
- // Draw filled cells.
- if (cellGeometry.getStatus())
- {
- for (int j = 0; j < numCombinedCells; j++)
- {
- ag.setColor(colorMap[cellGeometry.getI()]);
- ag.fillPolygon(data.hv[0][j], data.hv[1][j], data.hv[0][j].length);
- }
- }
- // Draw cell outlines.
- if (cellOutline.getStatus())
- {
- ag.updateDrawParameters(new ADrawParameters(true, cellOutline.getI(), 0, 1, 0, 0, false, 1, 0));
- for (int j = 0; j < numCombinedCells; ++j)
- {
- ag.drawPolygon(data.hv[0][j], data.hv[1][j], data.hv[0][j].length);
- }
- }
- //Scale the cell polygons.
- data = scaleEndcapPolygons(EndcapBinnedEnergyList, data, minCellEnergy, maxCellEnergy);
- //Get the colours of the cells
- byte[] EndcapColor= internalEndcapColor(EndcapBinnedEnergyList, minCellEnergy, maxCellEnergy);
- // And draw them.
- AParameter colorFunction = parameterStore.get(name, "ColorFunction");
- if (colorFunction.getI() == ACalorimeterData.COLOR_FUNC_ENERGY)
- {
- switch (AColorMap.getColorMap())
- {
- case AColorMap.COLOR_MAP_DEFAULT1:
- case AColorMap.COLOR_MAP_DEFAULT2:
- case AColorMap.COLOR_MAP_M4M5:
- case AColorMap.COLOR_MAP_GRAYDET:
- case AColorMap.COLOR_MAP_ORIGINAL:
- // Use colors.
- colorMap = AColorMap.getColors(AColorMap.COLOR_MAP_HITCOL);
- break;
- case AColorMap.COLOR_MAP_GRAY:
- case AColorMap.COLOR_MAP_BW:
- // Use grayscale.
- colorMap = AColorMap.getColors(AColorMap.COLOR_MAP_GRAY_HITCOL);
- break;
- }
- //draw the legend
- if(ALegendWindow.exists())
- {
- if (AColorMap.getColorMap() != AColorMap.COLOR_MAP_BW)
- {
- double[] colorEnergy = energyOfEndcapColor(minCellEnergy,maxCellEnergy);
- ALegendWindow.getInstance().addEnergyText(window, colorEnergy,maxCellEnergy, colorMap);
- }
- else
- ALegendWindow.getInstance().addEnergyText(window, minCellEnergy,maxCellEnergy);
- }
- }
- else if(ALegendWindow.exists())
- ALegendWindow.getInstance().clearText(window);
- //draw filled cell
- for (int j = 0; j < numCombinedCells; j++)
- {
- ag.setColor(colorMap[EndcapColor[j]]);
- ag.fillPolygon(data.hv[0][j],data.hv[1][j], data.hv[0][j].length);
- }
- //draw frame around cell
- if (drawFrame && !cellGeometry.getStatus())
- {
- for (int j = 0; j < numCombinedCells; j++)
- {
- ag.setColor(colorMap[frameColor]);
- ag.drawPolygon(data.hv[0][j], data.hv[1][j], data.hv[0][j].length);
- }
- }
- }
-
- /**
- * Scales a series of polygons according to the user settings.
- * Used for summing over layer in the Endcaps in the YX projection
- *
- * @param cellEnergy double[] list of each cells energy
- * @param coord ACoord polygons to be scaled
- * @param minEnergy double min Energy in a cell
- * @param maxEnergy double max Energy in a cell
- *
- * @return ACoord scaled polygons
- */
- protected static ACoord scaleEndcapPolygons(double[] cellEnergy, ACoord coord, double minEnergy, double maxEnergy)
- {
- int energyMode = parameterStore.get(name, "EnergyMode").getI();
-
- for (int i = 0; i < cellEnergy.length; i++)
- {
- if (cellEnergy[i] == 0)
- continue;
-
- double factor;
- if (parameterStore.get(name, "ColorFunction").getI() != ACalorimeterData.COLOR_FUNC_ENERGY)
- {
- // The user has (implicitly) selected energy scaling.
-
- //each cell is scaled to the new 0.1*0.1 binning so
- //density for each just depends on energy
- double density = cellEnergy[i];
- double minDensity = minEnergy;
- double maxDensity = maxEnergy;
-
- switch (energyMode)
- {
- case ACalorimeterData.ENERGY_MODE_MAX_LIN:
- case ACalorimeterData.ENERGY_MODE_SUM_LIN:
- factor = Math.sqrt(density / maxDensity);
- break;
-
- case ACalorimeterData.ENERGY_MODE_MAX_LOG:
- case ACalorimeterData.ENERGY_MODE_SUM_LOG:
- double magnitude = Math.floor(Math.log10(Math.sqrt(maxDensity / minDensity)) + 1.0);
- factor = (Math.log10(Math.sqrt(density / maxDensity)) + magnitude) / magnitude;
- break;
-
- case ACalorimeterData.ENERGY_MODE_MAX_SQRT:
- case ACalorimeterData.ENERGY_MODE_SUM_SQRT:
- factor = Math.sqrt(Math.sqrt(density / maxDensity));
- break;
-
- default:
- factor = ACalorimeterData.getNonScalingFactor();
- }
- }
- else
- {
- // No energy scaling, scale all cells by the same factor.
- factor = ACalorimeterData.getNonScalingFactor();
- }
-
- if (factor <= 1.0)
- {
- APolygon.scale(coord.hv[0][i], coord.hv[1][i], factor);
- }
- }
- return coord;
- }
-
- /**
- * Determines the color for each hit according to the color function set by
- * the user. Used for summing over layer in the Endcaps in the YX projection
- *
- * @param cellEnergy double[] list of each cells energy
- * @param minEnergy double min Energy in a cell
- * @param maxEnergy double max Energy in a cell
- *
- * @return byte[] colors for each energy
- */
- protected static byte[] internalEndcapColor(double[] cellEnergy, double minEnergy, double maxEnergy)
- {
- byte[] EndcapColor= new byte[cellEnergy.length];
-
- int colorFunction = parameterStore.get(name, "ColorFunction").getI();
- int constantColor = parameterStore.get(name, "Constant").getI();
- switch (colorFunction)
- {
- case ACalorimeterData.COLOR_FUNC_CONSTANT:
- //colorByConstant();
- for(int i = 0; i < cellEnergy.length; i++)
- EndcapColor[i] = (byte) constantColor;
- break;
-/* case COLOR_FUNC_SUBDET:
- colorBy(sub);
- break;
-
- case COLOR_FUNC_CLUSTER:
- colorBy(getClusters());
- break;
-
- case COLOR_FUNC_SAMPLING:
- colorBy(sampling);
- break;
-*/
- case ACalorimeterData.COLOR_FUNC_ENERGY:
- EndcapColor=colorEndcapByEnergy( cellEnergy, minEnergy, maxEnergy);
- break;
-/*
- case COLOR_FUNC_JET:
- colorBy(getJets());
- break;
-*/
- default:
- for(int i = 0; i < cellEnergy.length; i++)
- EndcapColor[i] = (byte) constantColor;
- }
-
- return EndcapColor;
- }
-
- /**
- * Color cells by energy.
- * Used for summing over layer in the Endcaps in the YX projection
- *
- * @param cellEnergy double[] list of each cells energy
- * @param minEnergy double min Energy in a cell
- * @param maxEnergy double max Energy in a cell
- *
- * @return byte[] colors for each energy
- */
- protected static byte[] colorEndcapByEnergy(double[] cellEnergy, double minEnergy, double maxEnergy)
- {
- byte[] EndcapColor= new byte[cellEnergy.length];
- int numColors = 17;
- for (int i = 0; i < cellEnergy.length; i++)
- {
- if (AColorMap.getColorMap() == AColorMap.COLOR_MAP_BW)
- {
- // Black and white colormap.
- EndcapColor[i] = AColorMap.BK;
- }
- else
- {
- // We have numColors colors available.
- switch (parameterStore.get(name, "EnergyMode").getI())
- {
- case ACalorimeterData.ENERGY_MODE_MAX_LIN:
- case ACalorimeterData.ENERGY_MODE_SUM_LIN:
- EndcapColor[i] = (byte) (numColors * (cellEnergy[i] - minEnergy) / (maxEnergy - minEnergy));
- break;
- case ACalorimeterData.ENERGY_MODE_MAX_LOG:
- case ACalorimeterData.ENERGY_MODE_SUM_LOG:
- EndcapColor[i] = (byte) (numColors * (Math.log(cellEnergy[i]) - Math.log(minEnergy)) / (Math.log(maxEnergy) - Math.log(minEnergy)));
- break;
- case ACalorimeterData.ENERGY_MODE_MAX_SQRT:
- case ACalorimeterData.ENERGY_MODE_SUM_SQRT:
- EndcapColor[i] = (byte) (numColors * Math.sqrt((cellEnergy[i] - minEnergy) / (maxEnergy - minEnergy)));
- break;
- }
- if (EndcapColor[i] >= numColors)
- EndcapColor[i] = (byte) (numColors - 1);
- }
- }
- return EndcapColor;
- }
-
- /**
- * Energy of each color.
- * Used for summing over layer in the Endcaps in the YX projection
- *
- * @param minEnergy double min Energy in a cell
- * @param maxEnergy double max Energy in a cell
- *
- * @return byte[] colors for each energy
- */
- protected static double[] energyOfEndcapColor(double minEnergy, double maxEnergy)
- {
- int numColors = 17;
- double[] colorEnergy= new double[numColors];
- for (int i = 0; i < numColors; i++)
- {
- // We have numColors colors available.
- switch (parameterStore.get(name, "EnergyMode").getI())
- {
- case ACalorimeterData.ENERGY_MODE_MAX_LIN:
- case ACalorimeterData.ENERGY_MODE_SUM_LIN:
- colorEnergy[i] = ((i * (maxEnergy - minEnergy))/numColors)+minEnergy;
- break;
- case ACalorimeterData.ENERGY_MODE_MAX_LOG:
- case ACalorimeterData.ENERGY_MODE_SUM_LOG:
- colorEnergy[i] = Math.exp(((i * (Math.log(maxEnergy) - Math.log(minEnergy)))/numColors)+Math.log(minEnergy));
- break;
- case ACalorimeterData.ENERGY_MODE_MAX_SQRT:
- case ACalorimeterData.ENERGY_MODE_SUM_SQRT:
- colorEnergy[i] = (Math.pow(i/numColors,2) * (maxEnergy - minEnergy))+minEnergy;
- break;
- }
- //may need check to see if lower or higher than min or max
- if (colorEnergy[i] >= numColors)
- colorEnergy[i] = (byte) (numColors -1);
- }
- return colorEnergy;
- }
-
-}
\ No newline at end of file
diff --git a/graphics/AtlantisJava/src/atlantis/canvas/AGLGraphics.java b/graphics/AtlantisJava/src/atlantis/canvas/AGLGraphics.java
deleted file mode 100644
index ee0c032ad05..00000000000
--- a/graphics/AtlantisJava/src/atlantis/canvas/AGLGraphics.java
+++ /dev/null
@@ -1,486 +0,0 @@
-package atlantis.canvas;
-
-import atlantis.graphics.AAbstractGraphics2D;
-import com.sun.opengl.util.BufferUtil;
-import java.awt.*;
-import java.awt.RenderingHints.Key;
-import java.awt.color.ColorSpace;
-import java.awt.geom.AffineTransform;
-import java.awt.geom.PathIterator;
-import java.awt.geom.Rectangle2D;
-import java.awt.image.BufferedImage;
-import java.awt.image.ComponentColorModel;
-import java.awt.image.DataBuffer;
-import java.awt.image.DataBufferByte;
-import java.awt.image.ImageObserver;
-import java.awt.image.Raster;
-import java.awt.image.WritableRaster;
-import java.nio.ByteBuffer;
-import java.nio.IntBuffer;
-import java.text.AttributedCharacterIterator;
-import javax.media.opengl.*;
-
-/**
- *
- * This class is an implementation of Graphics2D (although it actually subclasses
- * AAbstractGraphics2D). It wraps a GLAutoDrawable object to allow Swing based
- * components to paint and have their calls translated into OpenGL calls on the
- * underlying context.
- *
- * Obviously emulating all the functionality of Graphics2D is a challenge
- * so expect some visual issues initially...
- *
- * @author Adam Davison
- */
-public class AGLGraphics extends AAbstractGraphics2D {
-
- private int m_clipx = 0;
- private int m_clipy = 0;
- private int m_clipw = 0;
- private int m_cliph = 0;
- private Color m_color = Color.BLACK;
- private GLAutoDrawable m_d;
- private GL m_gl;
- private int m_depth = 1;
- private ComponentColorModel m_colorModel =
- new ComponentColorModel(ColorSpace.getInstance(ColorSpace.CS_sRGB),
- new int[]{8, 8, 8, 8}, true, false, ComponentColorModel.TRANSLUCENT,
- DataBuffer.TYPE_BYTE);
-
- public AGLGraphics(AGLGraphics old) {
- m_d = old.m_d;
- m_gl = m_d.getGL();
- }
-
- /*
- * Draw shapes, don't actually implement cubic or quadratic curves yet.
- * For now we only draw straight lines.
- * Having said that Atlantis uses such a huge number of segments that this
- * doesn't seem to be an issue for visual quality as of yet...
- */
- @Override
- public void draw(Shape z) {
- PathIterator pi = z.getPathIterator(null);
- float[] c = new float[6];
- float xpos = 0.0f;
- float ypos = 0.0f;
- while (!pi.isDone()) {
- int type = pi.currentSegment(c);
- switch (type) {
- case PathIterator.SEG_MOVETO:
- xpos = c[0];
- ypos = c[1];
- break;
- case PathIterator.SEG_CLOSE:
- // Ignoring close lines for now I guess...
- break;
- case PathIterator.SEG_CUBICTO:
- drawLine(c[2], c[3], c[4], c[5]);
- case PathIterator.SEG_QUADTO:
- drawLine(c[0], c[1], c[2], c[3]);
- case PathIterator.SEG_LINETO:
- // Just do lines...
- drawLine(xpos, ypos, c[0], c[1]);
- xpos = c[0];
- ypos = c[1];
- break;
- }
- pi.next();
- }
- //super.draw(z);
- }
-
- public AGLGraphics(GLAutoDrawable d) {
- m_d = d;
- m_gl = m_d.getGL();
- }
-
- /*
- * This implementation of create()/dispose() is highly thread unsafe
- * Since it's not trivial to duplicate the GL context we do the best we can
- * and hopefully it's ok for Atlantis.
- *
- * Essentially where Java2D would create a whole new object which would then
- * have it's own state, we push the modelview stack. This means that
- * we can perform transformations and then pop the modelview stack in dispose
- * to emulate this functionality.
- *
- * Obviously if you call create twice in two separate threads then one of
- * you is destroying the other one's modelview matrix...
- */
- @Override
- public Graphics create() {
- m_gl.glMatrixMode(GL.GL_MODELVIEW_MATRIX);
- m_gl.glPushMatrix();
- m_depth++;
- //System.err.println("PUSH: " + depth);
- //return new AGLGraphics(this); //?????
- return this;
- }
-
- @Override
- public void translate(int x, int y) {
- m_gl.glMatrixMode(GL.GL_MODELVIEW_MATRIX);
- m_gl.glTranslatef(x, y, 0.0f);
- return;
- }
-
- @Override
- public Color getColor() {
- return m_color;
- }
-
- @Override
- public void setColor(Color c) {
- m_color = c;
- //System.out.println(c.toString());
- float r = ((float) c.getRed()) / 255.0f;
- float g = ((float) c.getGreen()) / 255.0f;
- float b = ((float) c.getBlue()) / 255.0f;
- float a = ((float) c.getAlpha()) / 255.0f;
- m_d.getGL().glColor4f(r, g, b, a);
- }
-
- @Override
- public void setPaintMode() {
- throw new UnsupportedOperationException("Not supported yet.");
- }
-
- @Override
- public void setXORMode(Color c1) {
- throw new UnsupportedOperationException("Not supported yet.");
- }
-
- private Font m_font = Font.decode("Arial-BOLD-18");
-
- @Override
- public Font getFont() {
- return m_font;
- }
-
- @Override
- public void setFont(Font font) {
- m_font = font;
- }
-
- @Override
- public FontMetrics getFontMetrics(Font f) {
- throw new UnsupportedOperationException("Not supported yet.");
- }
-
- @Override
- public Rectangle getClipBounds() {
- return new Rectangle(m_clipx, m_clipy, m_clipw, m_cliph);
- }
-
- @Override
- public void clipRect(int x, int y, int width, int height) {
- throw new UnsupportedOperationException("Not supported yet.");
- }
-
- /*
- * Sort of ignoring clip here...
- */
- @Override
- public void setClip(int x, int y, int width, int height) {
- m_clipx = x;
- m_clipy = y;
- m_clipw = width;
- m_cliph = height;
- //System.out.println("Who cares about clip for now??");
- //throw new UnsupportedOperationException("Not supported yet.");
- }
-
- @Override
- public Shape getClip() {
- throw new UnsupportedOperationException("Not supported yet.");
- }
-
- @Override
- public void setClip(Shape clip) {
- throw new UnsupportedOperationException("Not supported yet.");
- }
-
- @Override
- public void copyArea(int x, int y, int width, int height, int dx, int dy) {
- throw new UnsupportedOperationException("Not supported yet.");
- }
-
- @Override
- public void drawLine(int x1, int y1, int x2, int y2) {
- drawLine((float) x1, (float) y1, (float) x2, (float) y2);
- }
-
- public void drawLine(float x1, float y1, float x2, float y2) {
- m_gl.glBegin(m_gl.GL_LINES);
- m_gl.glVertex2f(x1, y1);
- m_gl.glVertex2f(x2, y2);
- m_gl.glEnd();
- }
-
- @Override
- public void fillRect(int x, int y, int width, int height) {
- GL gl = m_d.getGL();
-
- gl.glPolygonMode(gl.GL_FRONT_AND_BACK, gl.GL_FILL);
-
- gl.glBegin(gl.GL_QUADS);
- gl.glVertex2f(x, y);
- gl.glVertex2f(x + width, y);
- gl.glVertex2f(x + width, y + height);
- gl.glVertex2f(x, y + height);
- gl.glEnd();
- }
-
- @Override
- public void clearRect(int x, int y, int width, int height) {
- throw new UnsupportedOperationException("Not supported yet.");
- }
-
- @Override
- public void drawRoundRect(int x, int y, int width, int height, int arcWidth, int arcHeight) {
- throw new UnsupportedOperationException("Not supported yet.");
- }
-
- @Override
- public void fillRoundRect(int x, int y, int width, int height, int arcWidth, int arcHeight) {
- throw new UnsupportedOperationException("Not supported yet.");
- }
-
- @Override
- public void drawOval(int x, int y, int width, int height) {
- throw new UnsupportedOperationException("Not supported yet.");
-
- }
-
- @Override
- public void fillOval(int x, int y, int width, int height) {
- //throw new UnsupportedOperationException("Not supported yet.");
- return;
- }
-
- @Override
- public void drawArc(int x, int y, int width, int height, int startAngle, int arcAngle) {
- throw new UnsupportedOperationException("Not supported yet.");
- }
-
- @Override
- public void fillArc(int x, int y, int width, int height, int startAngle, int arcAngle) {
- throw new UnsupportedOperationException("Not supported yet.");
- }
-
- @Override
- public void drawPolyline(int[] xPoints, int[] yPoints, int nPoints) {
- throw new UnsupportedOperationException("Not supported yet.");
- }
-
- @Override
- public void drawPolygon(int[] xPoints, int[] yPoints, int nPoints) {
- m_gl.glPolygonMode(m_gl.GL_FRONT_AND_BACK, m_gl.GL_LINE);
-
- m_gl.glBegin(m_gl.GL_POLYGON);
-
- for (int i = 0; i < nPoints; i++) {
- m_gl.glVertex2f(xPoints[i], yPoints[i]);
- }
-
- m_gl.glEnd();
- }
-
- public void fillPolygon(double[] xPoints, double[] yPoints, int nPoints) {
-
- m_gl.glPolygonMode(m_gl.GL_FRONT_AND_BACK, m_gl.GL_FILL);
-
- m_gl.glBegin(m_gl.GL_POLYGON);
-
- for (int i = 0; i < nPoints; i++) {
- m_gl.glVertex2d(xPoints[i], yPoints[i]);
- }
-
- m_gl.glEnd();
- }
-
- /*
- * Bear in mind that although Java2D is capable of filling arbitrary
- * polygons, OpenGL/graphics cards in general use a very simple fill
- * algorithm which is only guaranteed to be valid for convex polygons
- * If you want to render a concave polygon you have to tessellate it down
- * into convex ones.
- *
- * So far I've been able to do this by modifying the way geometry is
- * represented but you can also have a go at tessellating automatically
- * using GLUT if you really need to...
- */
- @Override
- public void fillPolygon(int[] xPoints, int[] yPoints, int nPoints) {
-
- // Prototype code for vertex arrays, actually slower for single polys
- // but will definitely improve importance if we start passing in big
- // arrays of polygons, say for complex geometry
- if (false) {
- IntBuffer ib = BufferUtil.newIntBuffer(nPoints * 2);
- for (int i = 0; i < nPoints; i++) {
- ib.put(xPoints[i]);
- ib.put(yPoints[i]);
- }
- ib.rewind();
- m_gl.glEnableClientState(GL.GL_VERTEX_ARRAY);
- m_gl.glVertexPointer(2, GL.GL_INT, 0, ib);
- m_gl.glDrawArrays(GL.GL_POLYGON, 0, nPoints);
- } else {
- // Draw the simple way
-
- m_gl.glPolygonMode(m_gl.GL_FRONT_AND_BACK, m_gl.GL_FILL);
- m_gl.glBegin(m_gl.GL_POLYGON);
-
- for (int i = 0; i < nPoints; i++) {
- m_gl.glVertex2f(xPoints[i], yPoints[i]);
- }
-
- m_gl.glEnd();
- }
- }
-
- @Override
- public Stroke getStroke() {
- return null;
- }
-
- @Override
- public void setStroke(Stroke z) {
- //super.setStroke(z);
- }
-
- @Override
- public void drawString(String str, int x, int y) {
- //FontRenderContext frc = new FontRenderContext(null, true, true);
- //GlyphVector gv = m_font.layoutGlyphVector(frc, str.toCharArray(),
- // 0, str.length(), Font.LAYOUT_LEFT_TO_RIGHT);
- //int ng = gv.getNumGlyphs();
- //Rectangle2D r = gv.getVisualBounds();
- //m_gl.glColor3f(1.0f, 0.0f, 0.0f);
- //this.fillRect((int) r.getX(), (int) r.getY(), (int) r.getWidth(), (int) r.getHeight());
- //this.setColor(m_color);
-
- WritableRaster test = Raster.createInterleavedRaster(DataBuffer.TYPE_BYTE,
- 32, 32, 4, null);
- BufferedImage testi = new BufferedImage(m_colorModel, test, false, null);
- Graphics testg = testi.getGraphics();
- FontMetrics fm = testg.getFontMetrics(m_font);
- Rectangle2D r = fm.getStringBounds(str, testg);
-
- WritableRaster raster =
- Raster.createInterleavedRaster(DataBuffer.TYPE_BYTE,
- (int)r.getWidth(), (int)r.getHeight(), 4, null);
-
- BufferedImage bi = new BufferedImage(m_colorModel, raster, false, null);
-
- Graphics big = bi.getGraphics();
- //big.setColor(Color.GREEN);
- //big.fillRect(0, 0, bi.getWidth(), bi.getHeight());
- big.setColor(m_color);
- big.setFont(m_font);
- big.drawString(str, -(int)r.getX(), -(int)r.getY());
- drawImage(bi, x, (int)(y - r.getHeight()), null);
- }
-
- @Override
- public void drawString(AttributedCharacterIterator iterator, int x, int y) {
- //throw new UnsupportedOperationException("Not supported yet.");
- }
-
- @Override
- public boolean drawImage(Image img, int x, int y, ImageObserver observer) {
- WritableRaster raster =
- Raster.createInterleavedRaster(DataBuffer.TYPE_BYTE,
- img.getWidth(observer), img.getHeight(observer), 4, null);
-
- BufferedImage bi = new BufferedImage(m_colorModel, raster, false, null);
-
- Graphics2D g = bi.createGraphics();
- //g.setColor(Color.WHITE);
- //g.drawLine(0, 0, bi.getWidth(), bi.getHeight());
- AffineTransform gt = new AffineTransform();
- gt.translate(0, img.getHeight(observer));
- gt.scale(1, -1d);
- g.transform(gt);
- g.drawImage(img, null, null);
-
- DataBufferByte imgbuf = (DataBufferByte) raster.getDataBuffer();
-
- m_gl.glRasterPos2i(x, y + bi.getHeight());
- //System.out.println(img.getWidth(observer) + ":" + img.getHeight(observer));
- m_gl.glDrawPixels(img.getWidth(observer), img.getHeight(observer),
- m_gl.GL_RGBA, m_gl.GL_UNSIGNED_BYTE, ByteBuffer.wrap(imgbuf.getData()));
-
- //System.out.println("Ignoring drawImage for now...");
- return true;
- //throw new UnsupportedOperationException("Not supported yet.");
- }
-
- @Override
- public boolean drawImage(Image img, int x, int y, int width, int height, ImageObserver observer) {
- throw new UnsupportedOperationException("Not supported yet.");
- }
-
- @Override
- public boolean drawImage(Image img, int x, int y, Color bgcolor, ImageObserver observer) {
- throw new UnsupportedOperationException("Not supported yet.");
- }
-
- @Override
- public boolean drawImage(Image img, int x, int y, int width, int height, Color bgcolor, ImageObserver observer) {
- throw new UnsupportedOperationException("Not supported yet.");
- }
-
- @Override
- public boolean drawImage(Image img, int dx1, int dy1, int dx2, int dy2, int sx1, int sy1, int sx2, int sy2, ImageObserver observer) {
- // Needed to render JComponent backgrounds
- //throw new UnsupportedOperationException("Not supported yet.");
- return true;
- }
-
- @Override
- public Object getRenderingHint(Key z) {
- return null;
- }
-
- @Override
- public void setRenderingHint(Key a, Object z) {
- return;
- }
-
- @Override
- public boolean drawImage(Image img, int dx1, int dy1, int dx2, int dy2, int sx1, int sy1, int sx2, int sy2, Color bgcolor, ImageObserver observer) {
- throw new UnsupportedOperationException("Not supported yet.");
- }
-
- @Override
- public void dispose() {
- m_depth--;
- if (m_depth == 0) {
- m_depth = 1;
- // This happens when the object is really finally destroyed...
- // When this is actually happening if we pop we'll cause a crash...
- //System.err.println("DISPOSE CALLED TWICE ON ONE OBJECT!!!");
- //(new Exception()).printStackTrace();
- } else {
- m_gl.glMatrixMode(GL.GL_MODELVIEW_MATRIX);
- m_gl.glPopMatrix();
- }
- return;
- // We didn't create so no need to dispose... probably bad...
- //throw new UnsupportedOperationException("Not supported yet.");
- }
-
- @Override
- public void rotate(double a, double b, double z) {
- super.rotate(a, b, z);
- }
-
- @Override
- public void rotate(double z) {
- m_gl.glMatrixMode(GL.GL_MODELVIEW_MATRIX);
- m_gl.glRotated(z * 360 / (2 * Math.PI), 0.0, 0.0, 1.0);
- }
-}
\ No newline at end of file
diff --git a/graphics/AtlantisJava/src/atlantis/canvas/ALayout.java b/graphics/AtlantisJava/src/atlantis/canvas/ALayout.java
deleted file mode 100755
index 7710aff90f8..00000000000
--- a/graphics/AtlantisJava/src/atlantis/canvas/ALayout.java
+++ /dev/null
@@ -1,231 +0,0 @@
-package atlantis.canvas;
-
-
-import java.util.Hashtable;
-import java.util.Enumeration;
-import java.awt.Rectangle;
-import java.awt.Dimension;
-import org.w3c.dom.*;
-
-
-/**
- * This class is not an Layout Manager! It contains the possible window
- * configuration - i.e. the possible subdivision of the canvas area in windows.
- * Layouts are identified by names such as "SQUARE","FULL_SCREEN".
- * Windows are identified by single characters such as "W","1", etc.
- * Windows are furthermore grouped in pages such that they do not overlap.
- * Pages are identified by the sum of the windows they contain, such as "Full","Vert"
- * This class is used mainly by ACanvas and AWindowControl.
- */
-
-public class ALayout {
- //The name of the layout
- private String name;
- //A table of the window constraints (i.e. corners) for all windows
- private Hashtable windowConstraints;
- //A table of the pages
- private Hashtable pages;
- //The default top window for this layout
- private String startupWindow;
- //The list of window names that by default are
- //on the top in this layout
- private String[] startupSequence;
-
-
- /**
- * Default constructor
- *
- * @param node XML node with the configuration
- */
- public ALayout(Node node) {
- //Create new hashtables for window corners and pages
- windowConstraints=new Hashtable();
- pages=new Hashtable();
-
- // reading the layout attributes
- NamedNodeMap attributes=node.getAttributes();
- name=attributes.getNamedItem("name").getNodeValue();
- startupWindow=attributes.getNamedItem("startupWindow").getNodeValue();
- startupSequence=decompose(attributes.getNamedItem("startup").getNodeValue());
-
- // reading all the content of Layout node
- // - i.e pages and window settings
- NodeList childrens=node.getChildNodes();
- for(int i=0; i<childrens.getLength(); i++) {
- //get the subnode
- Node child=childrens.item(i);
- //read in window or page information
- if(child.getNodeType()==Node.ELEMENT_NODE) {
- //check wether it is a window or page configuration
- String nodeName=child.getNodeName();
- if(nodeName.equals("Window"))
- readWindow(child);
- else if(nodeName.equals("Page"))
- readPage(child);
- }
- }
- }
-
- /**
- * Read the window configuration (name/size/position) from an XML node
- *
- * @param node XML node with the configuration
- */
- private void readWindow(Node child) {
- //Get the nodes attributes
- NamedNodeMap attributes=child.getAttributes();
- //retrieve window information
- String name=attributes.getNamedItem("name").getNodeValue();
- int hPos=Integer.parseInt(attributes.getNamedItem("hPos").getNodeValue());
- int vPos=Integer.parseInt(attributes.getNamedItem("vPos").getNodeValue());
- int width=Integer.parseInt(attributes.getNamedItem("width").getNodeValue());
- int height=Integer.parseInt(attributes.getNamedItem("height").getNodeValue());
- //Check if this is a valid window name
- if(!ACanvas.getCanvas().isValidWindowName(name))
- throw new Error("Undefined window name: "+name);
- //Check if this window has been defined before
- if(windowConstraints.containsKey(name))
- throw new Error("Multiple usage of window name: "+name);
- //Validate window size and position
- if((hPos<0)||(vPos<0)||(width<0)||(height<0))
- throw new Error("Wrong window constraints");
- //Add window constraints to the list
- windowConstraints.put(name, new Rectangle(hPos, vPos, width, height));
- }
-
- /**
- * Read the page configuration (windows it contains) from the XML node
- */
- private void readPage(Node child) {
- //get the attributes
- NamedNodeMap attributes=child.getAttributes();
- //retrieve page configuration
- String name=attributes.getNamedItem("name").getNodeValue();
- String content=attributes.getNamedItem("content").getNodeValue();
-
- //Check if this page exists before
- if(pages.containsKey(name))
- throw new Error("Redefinition of page: "+name);
- //Split the list of windows in single window names
- //('S789' -> 'S','7','8','9')
- String[] wContent=decompose(content);
-
- //Check that each of this is a valid window
- for(int i=0; i<wContent.length; i++)
- if(!ACanvas.getCanvas().isValidWindowName(wContent[i]))
- throw new Error("Unknown window name: "+wContent[i]);
- //Add this page
- pages.put(name, wContent);
- }
-
- /**
- * Break up a string of window names into a list of single window names
- *
- * @param s the string to break up
- */
- private String[] decompose(String s) {
- String[] strings=new String[s.length()];
- char[] characters=s.toCharArray();
-
- for(int i=0; i<characters.length; i++)
- strings[i]=new String(new char[] {characters[i]});
-
- return strings;
- }
-
- /**
- * Return the layout name
- */
- public String getName() {
- return name;
- }
-
- /**
- * Return the window selected on startup
- */
- public String getStartupWindow() {
- return startupWindow;
- }
-
- /**
- * Return the list of window names that are on top by default
- */
- public String[] getStartupSequence() {
- return startupSequence;
- }
-
- /**
- * Check if window is part of this layout
- */
- public boolean hasWindow(String wName) {
- return windowConstraints.containsKey(wName);
- }
-
- /**
- * Return window names in this layout
- */
- public String[] getWindowNames() {
- // Loop over the window constraints and retrieve
- // window names.
- Enumeration wn=windowConstraints.keys();
- int size=windowConstraints.size();
- String[] names=new String[size];
- //Add them all to the array
- for(int i=0; i<size; i++)
- names[i]=(String)wn.nextElement();
-
- return names;
- }
-
- /**
- * Return the constraints (i.e. position and size)
- * for a particular window
- *
- * @param wName the name of the window
- */
- public Rectangle getWindowConstraints(String wName) {
- return(Rectangle)windowConstraints.get(wName);
- }
-
- /**
- * Calculate the size of the layout from all its subwindows
- */
- public Dimension getSize() {
-
- Enumeration myenum=windowConstraints.elements();
- int w=0, h=0;
- //Loop over all windows
- while(myenum.hasMoreElements()) {
- Rectangle r=(Rectangle)myenum.nextElement();
- //Check if they exceed the current size
- if(r.x+r.width>w)
- w=r.x+r.width;
- if(r.y+r.height>h)
- h=r.y+r.height;
- }
-
- return new Dimension(w, h);
- }
-
- /**
- * Return a list of the page names
- */
- public String[] getPageNames() {
- Enumeration myenum=pages.keys();
- int size=pages.size();
- String[] names=new String[size];
-
- for(int i=0; i<size; i++)
- names[i]=(String)myenum.nextElement();
-
- return names;
- }
-
- /**
- * Return a list of the windows that a certain page consists of
- */
- public String[] getPageContent(String pageName) {
- return(String[])pages.get(pageName);
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/canvas/ALayoutChangeListener.java b/graphics/AtlantisJava/src/atlantis/canvas/ALayoutChangeListener.java
deleted file mode 100644
index 521e31440d1..00000000000
--- a/graphics/AtlantisJava/src/atlantis/canvas/ALayoutChangeListener.java
+++ /dev/null
@@ -1,16 +0,0 @@
-package atlantis.canvas;
-
-/**
- * Interface for all LayoutChangeListener classes. Each time the layout is
- * changed, the layoutChanged method is called with the layout as an argument
- * @author maillard
- */
-public interface ALayoutChangeListener {
-
- /**
- * This method gets called each time the layout is changed.
- * @param canvas the canvas
- */
- abstract public void layoutChanged(ACanvas canvas);
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/canvas/ALegendWindow.java b/graphics/AtlantisJava/src/atlantis/canvas/ALegendWindow.java
deleted file mode 100755
index b6397cf61f9..00000000000
--- a/graphics/AtlantisJava/src/atlantis/canvas/ALegendWindow.java
+++ /dev/null
@@ -1,197 +0,0 @@
-package atlantis.canvas;
-
-import java.awt.Color;
-import java.awt.Component;
-import java.awt.GridLayout;
-import java.awt.Toolkit;
-
-import javax.swing.JFrame;
-import javax.swing.JTextField;
-
-import atlantis.globals.AGlobals;
-import atlantis.graphics.AIcon;
-import atlantis.graphics.colormap.AColorMap;
-
-/**
- * The legend window appears when selected in the preferences menu
- * It displays the energy scale for the summed endcaps as these do not
- * have the pick interaction.
- *
- * Moved from package atlantis.gui to atlantis.canvas because of closer
- * coupling with classes in atlantis.canvas and atlantis.data. Could move
- * back later if can be decoupled. (Ben Waugh, 2011-10-01)
- *
- * @author Mark Stockton
- */
-public class ALegendWindow extends JFrame
-{
- private static JTextField[] titleField = new JTextField[2];
- private static JTextField[] textField;
- private static ALegendWindow instance = null;
-
- public static ALegendWindow getInstance()
- {
- if (instance == null)
- instance = new ALegendWindow();
- return instance;
- }
-
- /**
- * Check if ALegendWindow instance exists, without creating it if not.
- * @return true if ALegendWindow instance exists
- */
- public static boolean exists() {
- return (instance != null);
- }
-
- public void addEnergyText(AWindow window, double[] Energies, double Energy, Color[] colorMap)
- {
- if(window.equals(ACanvas.getCanvas().getCurrentWindow()))
- {
- getContentPane().removeAll();
- validate();
- getContentPane().setLayout(new GridLayout(Energies.length+titleField.length,1));
-
- titleField[0].setText("Color Energy thresholds:");
- getContentPane().add(titleField[0]);
- if(titleField[1]==null)
- titleField[1]=new JTextField();
- titleField[1].setEditable(false);
- titleField[1].setBackground(Color.white);
- titleField[1].setForeground(Color.black);
- titleField[1].setText("Maximum Cell Energy: " + (Math.rint(1000. * Energy)/1000) + " GeV ");
- getContentPane().add(titleField[1]);
-
- String s="";
- for(int i=Energies.length-1;i>=0;i--)
- {
- if(textField[i]==null)
- textField[i]=new JTextField();
- textField[i].setEditable(false);
- //to even out the line spacing
- if(i<10)
- s="0" + i;
- else
- s="" + i;
- s ="Color " + s + " Energy from: " + (Math.rint(1000. * Energies[i])/1000) + " GeV";
- textField[i].setText(s);
- textField[i].setBackground(colorMap[i]);
- //find out if too dark for black text
- if( colorMap[i].getRed() + colorMap[i].getGreen() +
- colorMap[i].getBlue()<=128)
- textField[i].setForeground(Color.white);
- else
- textField[i].setForeground(Color.black);
- getContentPane().add(textField[i]);
- }
- invalidate();
- pack();
- setVisible(true);
- }
- }
-
- public void addEnergyText(AWindow window, double minEnergy, double maxEnergy)
- {
- if(window.equals(ACanvas.getCanvas().getCurrentWindow()))
- {
- getContentPane().removeAll();
- validate();
- getContentPane().setLayout(new GridLayout(3,1));
- titleField[0].setText("Color Energy thresholds:");
- getContentPane().add(titleField[0]);
- if(titleField[1]==null)
- titleField[1]=new JTextField();
- titleField[1].setEditable(false);
- titleField[1].setBackground(Color.white);
- titleField[1].setForeground(Color.black);
- titleField[1].setText("Maximum Cell Energy: " + (Math.rint(1000. * maxEnergy)/1000) + " GeV ");
- getContentPane().add(titleField[1]);
-
- if(textField[0]==null)
- textField[0]=new JTextField();
- textField[0].setEditable(false);
- textField[0].setText("Minimum Cell Energy: " + (Math.rint(1000. * minEnergy)/1000) + " GeV ");
- textField[0].setBackground(Color.white);
- textField[0].setForeground(Color.black);
- getContentPane().add(textField[0]);
- invalidate();
- pack();
- setVisible(true);
- }
- }
-
- public void clearText(AWindow window)
- {
- if(!titleField[0].getText().equals("Select colour by Energy to bring up scale")
- && window.equals(ACanvas.getCanvas().getCurrentWindow()))
- {
- getContentPane().removeAll();
- validate();
- getContentPane().setLayout(new GridLayout(1,1));
- titleField[0].setText("Select colour by Energy to bring up scale");
- getContentPane().add(titleField[0]);
- invalidate();
- pack();
- setVisible(true);
- }
- }
-
- public void nothingToDisplay(AWindow window)
- {
- if(!titleField[0].getText().equals("Select LAr/HEC Summed and colour by Energy to bring up scale")
- && window.equals(ACanvas.getCanvas().getCurrentWindow()))
- {
- getContentPane().removeAll();
- validate();
- getContentPane().setLayout(new GridLayout(1,1));
- titleField[0].setText("Select LAr/HEC Summed and colour by Energy to bring up scale");
- getContentPane().add(titleField[0]);
- invalidate();
- pack();
- setVisible(true);
- }
-
- }
-
- private ALegendWindow()
- {
- this.setTitle("Legend");
- AIcon.setIconImage(this);
- this.setResizable(false);
- setDefaultCloseOperation(DISPOSE_ON_CLOSE);
- int numColors = AColorMap.getNumColors();
- getContentPane().setLayout(new GridLayout(1,1));
- textField = new JTextField[numColors];
- titleField[0] =new JTextField();
- titleField[0].setEditable(false);
- titleField[0].setBackground(Color.white);
- titleField[0].setForeground(Color.black);
- titleField[0].setText("Select LAr/HEC Summed and colour by Energy to bring up scale");
- getContentPane().add(titleField[0]);
-
- // set the initial location
- Component gui = AGlobals.instance().getGuiFrame();
- int guiWidth = gui.getWidth();
- int guiHeight = gui.getHeight();
- int guiX = gui.getX();
- int dialogWidth = (int) this.getPreferredSize().getWidth();
- int dialogHeight = (int) this.getPreferredSize().getHeight();
- int screenWidth = Math.round((float) Toolkit.getDefaultToolkit()
- .getScreenSize().getWidth());
- if (guiX + guiWidth + (dialogWidth - guiWidth) / 2 > screenWidth)
- this.setLocation(Math.max(0, screenWidth - dialogWidth), Math.max(
- 0, (guiHeight - dialogHeight) / 3));
- else
- this.setLocation(Math.max(0, guiX + (guiWidth - dialogWidth) / 2),
- Math.max(0, (guiHeight - dialogHeight) / 3));
-
- pack();
- setVisible(true);
- }
-
- public void dispose()
- {
- instance = null;
- super.dispose();
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/canvas/AOverlay.java b/graphics/AtlantisJava/src/atlantis/canvas/AOverlay.java
deleted file mode 100644
index f4147695a91..00000000000
--- a/graphics/AtlantisJava/src/atlantis/canvas/AOverlay.java
+++ /dev/null
@@ -1,193 +0,0 @@
-package atlantis.canvas;
-
-import java.awt.Color;
-import java.awt.Font;
-import java.awt.FontMetrics;
-import java.awt.Graphics;
-
-import javax.swing.ImageIcon;
-import javax.swing.JPanel;
-
-import atlantis.event.AEvent;
-import atlantis.event.AEventManager;
-import atlantis.globals.AGlobals;
-import atlantis.graphics.AGraphics;
-import atlantis.parameters.APar;
-import atlantis.utils.AUtilities;
-
-/**
- * AOverlay should be used within a GlassPane in the ACanvas.
- * The overlay acts as a canvas on which images can be drawn over the existing display.
- * This is currently only used to draw the ATLAS logo and Run/Event info as a floating image.
- * Any drawing should be done with the paintComponent method, which is called as the Canvas is drawn.
- * @author Tom McLaughlan
- */
-public class AOverlay extends JPanel {
-
- protected static APar parameterStore = APar.instance();
-
- public AOverlay() {
- setOpaque(false);
- }
-
- /**
- * When the ACanvas GlassPane contains an Overlay instance, this is called
- * after the Canvas is drawn.
- */
- @Override public void paintComponent(Graphics g) {
- super.paintComponent(g);
- if(parameterStore.get("Logo","ShowATLAS").getStatus())
- drawATLASLogo(g);
- }
-
- /**
- * Draws a scaled version of the ATLAS PNG in the Overlay
- * @param g The Graphics instance to draw to
- */
- protected void drawATLASLogo(Graphics g) {
-
- int windowWidth = getWidth();
- int windowHeight = getHeight();
-
- int logoWidth = 0;
- int logoHeight = 0;
-
- double size = parameterStore.get("Logo", "LogoSize").getD();
-
- logoWidth = (int) (windowWidth*size);
- logoHeight = (int) (logoWidth*0.6);
-
- int logoX = 0;
- int logoY = 0;
-
- double hpos = parameterStore.get("Logo", "LogoHPos").getD();
- logoX = (int) ((hpos * (windowWidth-logoWidth)));
-
- double vpos = parameterStore.get("Logo", "LogoVPos").getD();
-
- int heightOffset = 0;
- if(parameterStore.get("Prefs", "CanvasTitle").getStatus()) {
- windowHeight = this.getParent().getHeight() - 40;
- heightOffset = 40;
- }
- logoY = (int) ((vpos * (windowHeight-logoHeight))) + heightOffset;
-
-
- long EventNumber = 0;
- long RunNumber = 0;
- String DateTime = "";
- Color textColor = Color.white,
- backgroundColor = Color.black;
-
- AEvent event = AEventManager.instance().getCurrentEvent();
-
- if (event != null) {
- RunNumber = event.getRunNumber();
- EventNumber = event.getEventNumber();
- DateTime = event.getDateTime();
- }
-
- // Begin drawing
- AGraphics ag = AGraphics.makeAGraphics(g);
- // Fill the background
- ag.setColor(backgroundColor);
- //ag.fillRect(logoX, logoY, logoWidth, logoHeight);
-
- String iconPath = AGlobals.instance().getHomeDirectory() + "img" + System.getProperty("file.separator");
-
- ImageIcon i = AUtilities.getFileAsImageIcon(iconPath + "atlas_logo_shadow.png");
-
-
- // Determine height and width of current window, and width of ATLAS logo
- // These are then used to determine a scaling factor which is used in the
- // scale function.
- //
-
- int iwidth = i.getIconWidth();
- double factor = (double) logoWidth / (double) iwidth;
-
- // Call scale function to scale image to window size
- ImageIcon iscale = AUtilities.scale(i.getImage(), factor, parameterStore.get("Prefs", "AntiAlias").getStatus());
- // x, y calculated to position image exactly centred
- int x = (logoWidth / 2) - (iscale.getIconWidth() / 2);
- int y = (logoHeight / 2) - ((3 * iscale.getIconHeight()) / 4);
-
- x += logoX;
- y += logoY;
-
- int dpi = 72;
-
- // Set a scaling font size with window width
- int fontSize = (int) Math.round(3.0 * logoWidth / (double) dpi) - 2;
-
- Font f = new Font("SansSerif", Font.PLAIN, fontSize);
-
- ag.drawImage(iscale.getImage(), x, y);
-
- ag.setColor(textColor); // Set colour for text
- ag.updateColor(); // Update current colour for drawing
-
- String DateString = "", RunEventString = "";
- if (event != null) {
- DateString = "Date: " + DateTime;
- RunEventString = "Run Number: " + RunNumber + ", Event Number: " + EventNumber;
- } else {
- RunEventString = "No event data available";
- }
-
- FontMetrics fm = g.getFontMetrics(f);
- int DateWidth = fm.stringWidth(DateString);
- int RunEventWidth = fm.stringWidth(RunEventString);
-
- // Check if font is wider than the window and scale down til it fits.
- while ((RunEventWidth > logoWidth - 20) || (DateWidth > logoWidth - 20))
- {
-
- fontSize = fontSize - 1;
- f = new Font("SansSerif", Font.PLAIN, fontSize);
- fm = g.getFontMetrics(f);
- RunEventWidth = fm.stringWidth(RunEventString);
- DateWidth = fm.stringWidth(DateString);
- }
-
- ag.setFont(f); // set font as defined above
-
- if (event != null) {
- drawStrokedString(ag, RunEventString, logoX + (logoWidth / 2) - RunEventWidth / 2, (int) (y + (1.1 * iscale.getIconHeight())), Color.WHITE, Color.BLACK);
- //ag.drawString(RunEventString,
- // logoX + (logoWidth / 2) - RunEventWidth / 2, y + (1.1 * iscale.getIconHeight()));
-
- if(!DateTime.equals("") && !DateTime.equals("n/a")) {
- // If event contains Date/Time data, draw Run Number, Event Number and Date/Time
- // and position text in centre of window
- drawStrokedString(ag, DateString, logoX + (logoWidth / 2) - DateWidth / 2, (int) (y + (1.3 * iscale.getIconHeight())), Color.WHITE, Color.BLACK);
-
- //ag.drawString(DateString,
- // logoX + (logoWidth / 2) - DateWidth / 2, y + (1.3 * iscale.getIconHeight()));
- }
- }
- }
-
- /**
- * Draws text with an outline, crudely.
- * @param ag The AGraphics instance to draw to
- * @param str The String to draw
- * @param x x position of the string
- * @param y y position of the string
- * @param fg Text foreground colour
- * @param bg Text outline colour
- */
- protected void drawStrokedString(AGraphics ag, String str, int x, int y, Color fg, Color bg) {
- ag.setColor(Color.BLACK);
- ag.updateColor();
- ag.drawString(str, x-1, y-1);
- ag.drawString(str, x+1, y+1);
- ag.drawString(str, x+1, y-1);
- ag.drawString(str, x-1, y+1);
- ag.setColor(fg);
- ag.updateColor();
- ag.drawString(str, x, y);
- }
-
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/canvas/AScale.java b/graphics/AtlantisJava/src/atlantis/canvas/AScale.java
deleted file mode 100644
index 8359fe7cc7c..00000000000
--- a/graphics/AtlantisJava/src/atlantis/canvas/AScale.java
+++ /dev/null
@@ -1,356 +0,0 @@
-package atlantis.canvas;
-
-import java.awt.geom.GeneralPath;
-
-import atlantis.projection.AProjection2D;
-import atlantis.projection.AProjection;
-
-/**
- * This class contains static methods which are useful for the
- * AScaleBorder class and any potential subclasses.
- *
- * @author Charles Loomis, Ben Waugh
- **/
-public class AScale {
- final GeneralPath primaryTicks;
- final GeneralPath secondaryTicks;
- final double[] labelValues; // units are cm
- final double[] labelPositions; // after transform
-
- final static public int LEFT_TICKS=0;
- final static public int RIGHT_TICKS=1;
- final static public int BOTH_TICKS=2;
-
- /**
- * The size in pixels of the primary tick marks. This is a global
- * property for all scales. */
- private static float primaryTickSize=8.f;
-
- /**
- * The size in pixels of the secondary tick marks. This is a
- * global property for all scales. */
- private static float secondaryTickSize=5.f;
-
- private AScale(GeneralPath primaryTicks, GeneralPath secondaryTicks,
- double[] label, double[] position) {
- this.primaryTicks = primaryTicks;
- this.secondaryTicks = secondaryTicks;
- this.labelValues = label;
- this.labelPositions = position;
- }
-
- /**
- * Set the tick sizes (in pixels) for the primary and secondary
- * tick marks. */
- static public void setTickSizes(float primaryTickSize,
- float secondaryTickSize) {
- AScale.primaryTickSize=primaryTickSize;
- AScale.secondaryTickSize=secondaryTickSize;
- }
-
- /**
- * Get the primary tick size (in pixels). */
- static public float getPrimaryTickSize() {
- return AScale.primaryTickSize;
- }
-
- /**
- * Get the secondary tick size (in pixels). */
- static public float getSecondaryTickSize() {
- return AScale.secondaryTickSize;
- }
-
- /**
- * A utility method to add a tick mark to the given GeneralPath at
- * the given position. */
- static private void addTickMark(GeneralPath gp,
- int location,
- float tickPosition,
- float tickLength) {
-
- switch(location) {
-
- case(AScale.RIGHT_TICKS):
- gp.moveTo(tickPosition, 0.f);
- gp.lineTo(tickPosition, tickLength);
- break;
-
- case(AScale.LEFT_TICKS):
- gp.moveTo(tickPosition, 0.f);
- gp.lineTo(tickPosition, -tickLength);
- break;
-
- case(AScale.BOTH_TICKS):
- gp.moveTo(tickPosition, -tickLength);
- gp.lineTo(tickPosition, tickLength);
- break;
- }
- }
-
- /**
- * Get scale with given parameters.
- *
- * @param minValueTransformed min value after (fish-eye) transformation
- * @param maxValueTransformed max value after (fish-eye) transformation
- * @param scaleSize length of the scale border
- * @param minPrimary minimum number of primary tick marks
- * @param minSeparation minimum separation between tick marks
- * @param location left,right,top,bottom
- * @param isVertical whether this is a horizontal or vertical scale
- * @param proj the projection this scale is drawn for
- * @return
- */
- public static AScale calculateScale(
- double minValueTransformed,
- double maxValueTransformed,
- int scaleSize,
- int minPrimary,
- int minSeparation,
- int location,
- int isVertical,
- AProjection proj
- ){
- // Setup the two paths which will contain the primary and secondary tick marks.
- GeneralPath primaryTicks = new GeneralPath();
- GeneralPath secondaryTicks = new GeneralPath();
- resetScale(primaryTicks,scaleSize);
- resetScale(secondaryTicks,scaleSize);
-
- double minValue = invertTransformation(minValueTransformed,proj,isVertical);
- double maxValue = invertTransformation(maxValueTransformed,proj,isVertical);
-
- double[] labelValues;
- double[] labelPositions;
- double[] intervals = getScaleIntervals(minValue,maxValue);
- if (intervals!=null) {
- double labelInterval = intervals[0];
- double primarySpacing = intervals[1];
- double secondarySpacing = intervals[2];
- addTickMarks(primaryTicks, proj, minValue, maxValue, primarySpacing, isVertical, location, primaryTickSize, scaleSize);
- addTickMarks(secondaryTicks, proj, minValue, maxValue, secondarySpacing, isVertical, location, secondaryTickSize, scaleSize);
-
- // Now the labels with the correct precision must be made.
- labelValues = getScaleValues(minValue,maxValue,labelInterval);
- int numLabels = labelValues.length;
- labelPositions = new double[numLabels];
- int ndigits=(int)(Math.floor(Math.log10(primarySpacing)));
- ndigits=-Math.min(ndigits, 0);
-
- for (int i=0; i<labelValues.length; ++i) {
- double valueTrans = applyTransformation(labelValues[i],proj,isVertical);
- labelPositions[i] = (double) interpolate(valueTrans, scaleSize, minValueTransformed, maxValueTransformed);
- }
- } else {
- labelValues = new double[] {};
- labelPositions = new double[] {};
- }
-
- return new AScale(primaryTicks,secondaryTicks,labelValues,labelPositions);
- }
-
- /**
- * Add tick marks at multiples of given spacing.
- *
- * @param path
- * @param proj
- * @param min
- * @param max
- * @param spacing
- * @param isVertical
- * @param location
- * @param tickSize
- * @param scaleSize
- */
- private static void addTickMarks(GeneralPath path,
- AProjection proj, double min, double max, double spacing, int isVertical, int location, float tickSize, double scaleSize) {
- int minMultiplier = (int) Math.ceil(min/spacing);
- int maxMultiplier = (int) Math.floor(max/spacing);
- double minTrans = applyTransformation(min,proj,isVertical);
- double maxTrans = applyTransformation(max,proj,isVertical);
- for (int i=minMultiplier; i<=maxMultiplier; ++i) {
- double value = i * spacing;
- double valTrans = applyTransformation(value,proj,isVertical);
- float tickPosition=interpolate(valTrans, scaleSize, minTrans, maxTrans);
- addTickMark(path, location, tickPosition, tickSize);
- }
-
- }
-
- private static void resetScale(GeneralPath path, double length) {
- path.reset();
- path.moveTo(0.f, 0.f);
- path.lineTo((float)length, 0.f);
- }
-
- /**
- * Convert from physical detector coordinate to transformed (fish-eye) coordinate.
- *
- * @param value
- * @param proj
- * @param isVertical
- * @return
- */
- private static double applyTransformation(double value, AProjection proj, int isVertical) {
- double valueTransformed = value;
- //Apply non-linear transforms if necessary
- if (proj instanceof AProjection2D) {
- if (isVertical==1) {
- valueTransformed = ((AProjection2D)proj).nonLinearTransform(0,value).getY();
- } else {
- valueTransformed = ((AProjection2D)proj).nonLinearTransform(value,0).getX();
- }
- }
- return valueTransformed;
- }
-
- /**
- * Convert from transformed (fish-eye) coordinate back to physical detector coordinate.
- *
- * @param valueTransformed
- * @param proj
- * @param isVertical
- * @return
- */
- private static double invertTransformation(double valueTransformed, AProjection proj, int isVertical) {
- double value = valueTransformed;
- //Apply non-linear transforms if necessary
- if (proj instanceof AProjection2D) {
- if (isVertical==1) {
- value = ((AProjection2D)proj).inverseNonLinearTransform(0,valueTransformed).getY();
- } else {
- value = ((AProjection2D)proj).inverseNonLinearTransform(valueTransformed,0).getX();
- }
- }
- return value;
- }
-
- static float interpolate(double value, double size,
- double value0, double value1) {
- return(float)(size*(value-value0)/(value1-value0));
- }
-
- /**
- * Title is put between last two value labels on axis.
- * @return the position for the title on the scale
- */
- public double getTitlePosition() {
- double axisPosition;
- int numLabels = labelPositions.length;
- if (numLabels>=2) {
- axisPosition = 0.5 * (labelPositions[numLabels-1] + labelPositions[numLabels-2]);
- } else {
- axisPosition = 0.0; // default to 0 if only one label (shouldn't happen)
- }
- return axisPosition;
- }
-
- /**
- * Get array of three intervals to use on scale.
- * @param min minimum value on scale
- * @param max maximum value on scale
- * @return intervals to use for [labels, primary tick marks, secondary tick marks]
- */
- static double[] getScaleIntervals(double min, double max) {
- if (min>=max) return null;
- boolean rangeIncludesZero = (min<0.0 && max>0.0);
- double labelInterval;
- double labelIntervalUnit;
- int labelIntervalMultiplier;
- if (rangeIncludesZero) {
- double maxAbsValue = Math.max(Math.abs(min), Math.abs(max));
- double m=Math.floor(Math.log10(maxAbsValue));
- labelIntervalUnit = Math.pow(10., m);
- labelInterval = getRoundNumber(maxAbsValue);
- labelIntervalMultiplier = (int) Math.round(labelInterval / labelIntervalUnit);
- if (labelIntervalMultiplier==2 && 2*labelInterval<maxAbsValue) {
- labelIntervalMultiplier = 4;
- labelInterval = labelIntervalMultiplier * labelIntervalUnit;
- }
- } else {
- double range = Math.abs(max-min);
- labelInterval = getRoundNumber(range);
- int minMultiplier = (int) Math.ceil(min/labelInterval);
- int maxMultiplier = (int) Math.floor(max/labelInterval);
- while (maxMultiplier==minMultiplier) {
- labelInterval = getRoundNumber(labelInterval*0.99);
- minMultiplier = (int) Math.ceil(min/labelInterval);
- maxMultiplier = (int) Math.floor(max/labelInterval);
- }
- double m=Math.floor(Math.log10(labelInterval));
- labelIntervalUnit = Math.pow(10., m);
- minMultiplier = (int) Math.ceil(min/labelInterval);
- maxMultiplier = (int) Math.floor(max/labelInterval);
- labelIntervalMultiplier = (int) (labelInterval/labelIntervalUnit);
- }
-
- double primaryInterval, secondaryInterval;
- switch (labelIntervalMultiplier) {
- case 1:
- primaryInterval = labelIntervalUnit * 0.5;
- secondaryInterval = labelIntervalUnit * 0.1;
- break;
- case 2:
- primaryInterval = labelIntervalUnit * 1.0;
- secondaryInterval = labelIntervalUnit * 0.2;
- break;
- case 3:
- primaryInterval = labelIntervalUnit * 0.2;
- secondaryInterval = labelIntervalUnit * 0.1;
- break;
- case 4:
- primaryInterval = labelIntervalUnit * 2.0;
- secondaryInterval = labelIntervalUnit * 0.5;
- break;
- case 5:
- primaryInterval = labelIntervalUnit * 1.0;
- secondaryInterval = labelIntervalUnit * 0.5;
- break;
- default: // Should not happen
- primaryInterval = labelIntervalUnit * 0.5;
- secondaryInterval = labelIntervalUnit * 0.1;
- }
- return new double[] {labelInterval, primaryInterval, secondaryInterval};
- }
-
- /**
- * Get array of multiples of the given interval that lie in the given range.
- * @param minValue minimum value on scale
- * @param maxValue maximum value on scale
- * @param labelInterval interval between values
- * @return array of calculate values
- */
- static double[] getScaleValues(double minValue, double maxValue,
- double interval) {
- int min = (int) Math.ceil(minValue/interval);
- int max = (int) Math.floor(maxValue/interval);
- int numValues = 1 + max - min;
- double[] values = new double[numValues];
- for (int i=0; i<numValues; ++i) {
- values[i] = (min + i) * interval;
- }
- return values;
- }
-
- /**
- * Rounds number towards zero to nearest "round number", i.e. a power of ten
- * multiplied by 1, 2 or 5.
- *
- * @param d number to round
- * @return next round number towards zero from input
- */
- static double getRoundNumber(double d) {
- double magnitude = Math.abs(d);
- double m=Math.floor(Math.log10(magnitude));
- double unit = Math.pow(10., m);
- double multIn = magnitude / unit;
- double multOut;
- if (multIn >= 5.0) multOut = 5.0;
- else if (multIn >= 2.0) multOut = 2.0;
- else multOut = 1.0;
- double magRound = unit * multOut;
- double round;
- if (d<0.0) round = -magRound;
- else round = magRound;
- return round;
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/canvas/AScaleBorder.java b/graphics/AtlantisJava/src/atlantis/canvas/AScaleBorder.java
deleted file mode 100755
index 8610ee38bfa..00000000000
--- a/graphics/AtlantisJava/src/atlantis/canvas/AScaleBorder.java
+++ /dev/null
@@ -1,1282 +0,0 @@
-package atlantis.canvas;
-
-import atlantis.graphics.AAbstractGraphics2D;
-import atlantis.graphics.ACursorFactory;
-
-import java.awt.BasicStroke;
-import java.awt.Color;
-import java.awt.Component;
-import java.awt.Font;
-import java.awt.Graphics;
-import java.awt.Graphics2D;
-import java.awt.Insets;
-import java.awt.Rectangle;
-import java.awt.Stroke;
-import java.awt.Image;
-import java.awt.geom.AffineTransform;
-import java.awt.geom.NoninvertibleTransformException;
-import java.awt.geom.Point2D;
-
-import javax.swing.border.Border;
-
-import atlantis.gui.APreferencesControl;
-import atlantis.parameters.AEnumeratorParameter;
-import atlantis.parameters.ALinkParameter;
-import atlantis.parameters.APar;
-import atlantis.parameters.AParameter;
-import atlantis.projection.AProjection;
-import atlantis.projection.AProjectionLegoPlot;
-import atlantis.projection.AProjectionEventInfo;
-import atlantis.projection.AProjectionNGE;
-import atlantis.projection.AProjectionTrackResidual;
-import atlantis.utils.AMath;
-import java.awt.RenderingHints;
-
-/**
- * This class implements a Border in which the left and bottom sides contain
- * numerical scales.
- *
- * @author Charles Loomis, Sebastian Boeser
- */
-public class AScaleBorder implements Border
-{
- // Constants giving horizontal and vertical index of the data arrays.
- final static private int HORIZONTAL = 0;
- final static private int VERTICAL = 1;
-
- /**
- * Constant describing a transform in which the transformed x and y axes are
- * parallel (or antiparallel) to the original axes.
- */
- final static public int TYPE_PARALLEL_TRANSFORM = 0;
-
- /**
- * Constant describing a transform in which the transformed x and y axes are
- * parallel (or antiparallel) to the original y and x axes, respectively.
- */
- final static public int TYPE_SWITCHED_TRANSFORM = 1;
-
- /**
- * Constant describing a transform in which the transformed x-axis is
- * parallel (or antiparallel) to the original x-axis and the transformed
- * y-axis forms a non-zero angle with the original one.
- */
- final static public int TYPE_X_SKEW_TRANSFORM = 2;
-
- /**
- * Constant describing a transform in which the transformed y-axis is
- * parallel (or antiparallel) to the original y-axis and the transformed
- * x-axis forms a non-zero angle with the original one.
- */
- final static public int TYPE_Y_SKEW_TRANSFORM = 3;
-
- /**
- * Constant describing a transform in which the transformed x-axis is
- * parallel (or antiparallel) to the original y-axis and the transformed
- * y-axis forms a non-zero angle with the original x-axis.
- */
- final static public int TYPE_SWITCHED_X_SKEW_TRANSFORM = 4;
-
- /**
- * Constant describing a transform in which the transformed y-axis is
- * parallel (or antiparallel) to the original x-axis and the transformed
- * x-axis forms a non-zero angle with the original y-axis.
- */
- final static public int TYPE_SWITCHED_Y_SKEW_TRANSFORM = 5;
-
- /**
- * Constant describing a transform which does not fall into one of the other
- * categories.
- */
- final static public int TYPE_GENERAL_TRANSFORM = 6;
-
- /**
- * Constant indicating that a string should be aligned vertically with the
- * baseline of the text. This is the default in drawString calls which do
- * not specify an alignment.
- */
- public static final int TEXT_BASELINE = 0;
-
- /**
- * Constant indicating that a string should be aligned vertically with the
- * top of the text.
- */
- public static final int TEXT_TOP = 1;
-
- /**
- * Constant indicating that a string should be aligned vertically with the
- * bottom of the text.
- */
- public static final int TEXT_BOTTOM = 3;
-
- /**
- * Constant indicating that a string should be aligned by the center. This
- * is used for both horizontal and vertical alignment.
- */
- public static final int TEXT_CENTER = 2;
-
- /**
- * Constant indicating that a string should be aligned horizontally with the
- * left side of the text. This is the default for drawString calls which do
- * not specify an alignment.
- */
- public static final int TEXT_LEFT = 1;
-
- /**
- * Constant indicating that the string should be aligned horizontally with
- * the right side of the text.
- */
- public static final int TEXT_RIGHT = 3;
-
- private AScale horizontalScale; // holds tick marks and labels
- private AScale verticalScale;
-
- /**
- * String giving the axis labels.
- */
- private String[] axisLabels = new String[2];
-
- /**
- * String giving the axis units.
- */
- private String[] axisUnits = new String[2];
-
- /**
- * The initial font size for labeling.
- */
- private int fontSize = 12;
-
- /**
- * The initial font to use.
- */
- private Font labelFont = new Font("SansSerif", Font.BOLD, 12);
-
- /**
- * The width of the line used for the secondary tick marks.
- */
- final static private Stroke thinStroke = new BasicStroke(1.f);
-
- /**
- * The width of the line used for the primary tick marks.
- */
- final static private Stroke thickStroke = new BasicStroke(2.f);
-
- /**
- * An array to hold temporary point values for transformation.
- */
- private double[] axisPts = new double[6];
-
- /**
- * Flag to indicate that the scale has changed and that it needs to be
- * redrawn.
- */
- private boolean scaleChanged;
-
-
- /**
- * The current width of the horizontal scale.
- */
- private int currentWidth;
-
- /**
- * The current width of the vertical scale.
- */
- private int currentHeight;
-
- /**
- * Minimum value on the horizontal axis.
- */
- private double minHoriz;
-
- /**
- * Maximum value of the horizontal axis.
- */
- private double maxHoriz;
-
- /**
- * Minimum value of the vertical axis.
- */
- private double minVert;
-
- /**
- * Maximum value on the vertical axis.
- */
- private double maxVert;
-
- /**
- * The calculated Insets for this border.
- */
- private Insets insets;
-
- private boolean selected;
-
- /**
- * Wether to draw the scales for this window or not
- */
- private boolean drawScaleBorder;
-
- /**
- * Wether to draw the scales for this window or not
- * independant of the projection being displayed
- */
- private boolean drawScaleBorder_preference;
-
-
- /**
- * The window this scale is drawn in.
- */
- private final AWindow aWindow;
-
- /**
- * Constructs a AScaleBorder
- * @param theWindow the window this scale belongs to
- */
- public AScaleBorder(AWindow theWindow)
- {
- aWindow = theWindow;
-
- // Give default values for the size of the axes.
- minHoriz = 0.;
- maxHoriz = 0.;
- minVert = 0.;
- maxVert = 0.;
-
- // Make the new insets.
- resetInsets();
-
- // Set the current width and height.
- currentWidth = 0;
- currentHeight = 0;
- scaleChanged = false;
-
- selected = false;
- drawScaleBorder = true;
- drawScaleBorder_preference = true;
- }
-
- public void forceDraw()
- {
- scaleChanged = true;
- }
-
- public void toggleScale()
- {
- drawScaleBorder_preference = !drawScaleBorder_preference;
- //only actually toggle scale if on a window with scale
- AProjection p = aWindow.getProjection();
-
- if(p instanceof AProjectionLegoPlot || p instanceof AProjectionNGE || p instanceof AProjectionEventInfo)
- return;
-
- drawScaleBorder = !drawScaleBorder;
- scaleChanged = true;
- resetInsets();
- }
-
- public void hideScale()
- {
- //upon window change of projection check if scales need to hide or not
- AProjection p = aWindow.getProjection();
-
- // Check global 'Hide Scales' option (in preferences menu)
- // If hiding scales, set all scales to false
- //
- if(APreferencesControl.getHideScalesMenuItem())
- {
- drawScaleBorder=false;
- resetInsets();
- }
- else
- if(p instanceof AProjectionLegoPlot || p instanceof AProjectionNGE || p instanceof AProjectionEventInfo){
- if(drawScaleBorder){
- drawScaleBorder=false;
- resetInsets();
- }
- }else if(drawScaleBorder!=drawScaleBorder_preference){
- drawScaleBorder=drawScaleBorder_preference;
- resetInsets();
- }
- }
-
- public boolean getScaleStatus()
- {
- return drawScaleBorder_preference;
- }
-
- /**
- * Set the font for the labels.
- */
- public void setLabelFont(Font labelFont)
- {
- this.labelFont = labelFont;
- fontSize = labelFont.getSize();
- resetInsets();
- }
-
- public void setSelected()
- {
- selected = true;
- }
-
- public void setDeselected()
- {
- selected = false;
- }
-
- /**
- * Get the current font for the labels.
- */
- public Font getLabelFont()
- {
- return labelFont;
- }
-
- /**
- * Set the horizontal and vertical limits for the scales.
- */
- public void setLimits(double minHoriz, double maxHoriz, double minVert, double maxVert)
- {
- this.minHoriz = minHoriz;
- this.maxHoriz = maxHoriz;
- this.minVert = minVert;
- this.maxVert = maxVert;
- scaleChanged = true;
- }
-
- /**
- * Set the axis labels.
- */
- public void setAxisLabels(String horizontalLabel, String verticalLabel)
- {
- axisLabels[HORIZONTAL] = horizontalLabel;
- axisLabels[VERTICAL] = verticalLabel;
- }
-
- public String getHorizontalAxisLabel()
- {
- return axisLabels[HORIZONTAL];
- }
-
- public String getVerticalAxisLabel()
- {
- return axisLabels[VERTICAL];
- }
-
- /**
- * Set the axis units.
- */
- public void setAxisUnits(String horizontalUnits, String verticalUnits)
- {
- if (horizontalUnits != null)
- {
- axisUnits[HORIZONTAL] = horizontalUnits;
- }
- else
- {
- axisUnits[HORIZONTAL] = "";
- }
-
- if (verticalUnits != null)
- {
- axisUnits[VERTICAL] = verticalUnits;
- }
- else
- {
- axisUnits[VERTICAL] = "";
- }
- }
-
- /**
- * Returns the insets of this border.
- */
- @Override
- public Insets getBorderInsets(Component c)
- {
- return (Insets) insets.clone();
- }
-
- /**
- * Returns whether or not the border is opaque. This always returns true.
- */
- @Override
- public boolean isBorderOpaque() {return true;}
-
- /**
- * Paints the border and window decorations for the specified component with the specified graphics
- * context, position, and size.
- */
- @Override
- public void paintBorder(Component c, Graphics g, int x, int y, int width, int height)
- {
- //Get the graphics context
- Graphics2D vg = (Graphics2D) g;
- //Sanity check
- if (vg==null) return;
-
- //Select background and frame colors
- Color bg = AWindow.BORDER_BACKGROUND_COLOR ;
-
- //Paint the border frame
- paintBorderFrame(vg,bg,width,height);
-
- //If drawing the border draw scales
- if (drawScaleBorder)
- {
- //Now check which projection we have
- AProjection p = aWindow.getProjection();
-
- // Set the flag indicating that the scales must be remade.
- scaleChanged = (scaleChanged || width != currentWidth || height != currentHeight);
-
- //set the Scales
- setScales(p.getXLabel(), p.getYLabel(), p.getXUnits(), p.getYUnits(), makeTransform(aWindow.getUserCorners()), aWindow.getWidth(), aWindow.getHeight());
-
- //Paint the grid if there is one for this projection
- paintGrid(vg,p,width,height);
-
- //Paint the scales themselves
- paintScales(vg,p,width,height);
-
- // Reset the current width and height.
- currentWidth = width;
- currentHeight = height;
- scaleChanged = false;
- }
-
- //Check whether Window Title needs to be drawn
- if(APreferencesControl.getWindowTitleMenuItem()) {
- paintWindowTitle(g, width, height,true);
- }
-
- //Check whether FishEye Indicator needs to be drawn
- if(APreferencesControl.getFisheyeIndicatorMenuItem()) {
- paintFishEyeIndicator(g, false, width, height);
- }
- }
-
- /**
- * Paints the part of the border that appears when the window is printed
- */
- void printBorder(Component c, Graphics g, int x, int y, int width, int height)
- {
- paintBorder(c,g,x,y,width,height);
- }
-
-
- /**
- * Draw the part of the scales that shows up in printing
- */
- private void paintScales(Graphics2D g, AProjection p, int width, int height){
- APar parameterStore = APar.instance();
-
- // Make our own graphics contex, so we don't cause trouble elsewhere
- Graphics2D svg = (Graphics2D) g.create();
-
- Color foregroundColour = selected ? AWindow.BORDER_SELECTED_FOREGROUND_COLOR : AWindow.BORDER_FOREGROUND_COLOR;
-
- // Get the horizontal scale.
- if (scaleChanged)
- {
- int scaleLength = width - (insets.left + insets.right);
- horizontalScale = AScale.calculateScale(minHoriz, maxHoriz, scaleLength, 3, 7, AScale.RIGHT_TICKS,
- HORIZONTAL, p);
- }
-
- svg.translate(insets.left, height - insets.bottom + 2);
-
- svg.setColor(foregroundColour);
- svg.setFont(new Font("SansSerif", Font.BOLD, 12));
-
- // Draw the primary and secondary tick marks.
- svg.setStroke(thickStroke);
- svg.draw(horizontalScale.primaryTicks);
- svg.setStroke(thinStroke);
- svg.draw(horizontalScale.secondaryTicks);
-
- ScaleUnits hScaleUnits = new ScaleUnits(axisUnits[HORIZONTAL],minHoriz,maxHoriz);
- double factorH = hScaleUnits.scaleFactor;
- String unitsH = hScaleUnits.units;
-
- ScaleUnits vScaleUnits = new ScaleUnits(axisUnits[VERTICAL],minVert,maxVert);
- double factorV = vScaleUnits.scaleFactor;
- String unitsV = vScaleUnits.units;
-
- // Paint the tick labels.
- int numLabelsH = horizontalScale.labelValues.length;
- for (int i = 0; i < numLabelsH; i++)
- {
- double valueScaled = horizontalScale.labelValues[i] * factorH;
- int nDecPlaces = getNumDecimalPlaces(valueScaled);
- String label = String.format("%."+nDecPlaces+"f", valueScaled);
- drawString(svg, label,
- (float) horizontalScale.labelPositions[i], AScale.getPrimaryTickSize() + 0.2f * fontSize, TEXT_CENTER, TEXT_TOP, width - insets.left - insets.right);
- }
-
- // Paint the axis label.
- float axisPositionX = (float) horizontalScale.getTitlePosition();
- drawString(svg, axisLabels[HORIZONTAL] + " " + unitsH, axisPositionX, AScale.getPrimaryTickSize() + 0.2f * fontSize, TEXT_CENTER, TEXT_TOP, width - insets.left - insets.right);
-
- // End this context.
- svg.dispose();
-
- // Now create a new graphics context for the vertical axis.
- svg = (Graphics2D) (g.create());
-
- // Create the vertical scale.
- if (scaleChanged)
- {
- int scaleLength = height - (insets.top + insets.bottom);
- verticalScale = AScale.calculateScale(minVert, maxVert, scaleLength, 3, 7, AScale.LEFT_TICKS,
- VERTICAL, p);
- }
-
- svg.translate(insets.left - 2, height - insets.bottom);
- svg.rotate(-Math.PI / 2.);
-
- svg.setColor(foregroundColour);
- svg.setFont(new Font("SansSerif", Font.BOLD, 12));
-
- // Draw the primary and secondary tick marks.
- svg.setStroke(thickStroke);
- svg.draw(verticalScale.primaryTicks);
- svg.setStroke(thinStroke);
- svg.draw(verticalScale.secondaryTicks);
-
- // Paint the tick labels.
- int numLabelsV = verticalScale.labelValues.length;
- for (int i = 0; i < numLabelsV; i++)
- {
- double valueScaled = verticalScale.labelValues[i] * factorV;
- int nDecPlaces = getNumDecimalPlaces(valueScaled);
- String label = String.format("%."+nDecPlaces+"f", valueScaled);
- if(p instanceof AProjectionTrackResidual && parameterStore.get("TrackResidual", "Scale").getI() == 1)
- {
- if(!label.equals("0"))
- {
- long tmp = Math.round(((AProjectionTrackResidual)p).getResidual().getLogMagnitudeMin() + Math.abs(Double.parseDouble(label)));
- if(label.indexOf("-") == -1) //positive
- label = "1E" + tmp;
- else
- label = "-1E" + tmp;
- }
- }
- drawString(svg, label, (float) verticalScale.labelPositions[i], -(AScale.getPrimaryTickSize() + 0.2f * fontSize), TEXT_CENTER, TEXT_BOTTOM, height - insets.top - insets.bottom);
- }
-
- // Paint the axis label.
- float axisPositionY = (float) verticalScale.getTitlePosition();
- drawString(svg, axisLabels[VERTICAL] + " " + unitsV, axisPositionY, -(AScale.getPrimaryTickSize() + 0.2f * fontSize), TEXT_CENTER, TEXT_BOTTOM, height - insets.top - insets.bottom);
-
- // End this context.
- svg.dispose();
-
- }
-
- /**
- * Calculate number of decimal places needed in formatting number.
- * @param x number to format
- * @return number of decimal places needed
- */
- static int getNumDecimalPlaces(double x) {
- int m = - (int) Math.floor(Math.log10(Math.abs(x)));
- return Math.max(0, m);
- }
-
- /**
- * Draw the grid for the V-Plot
- **/
- private void paintGrid(Graphics2D g, AProjection p, int width, int height){
-
- // Make our own graphics contex, so we don't cause trouble elsewhere
- Graphics2D svg = (Graphics2D) g.create();
-
- // next part draws the grid for the V-plot
- if (p.getName().equals("VP"))
- {
- //Set color for grid lines
- svg.setColor(Color.LIGHT_GRAY);
-
- // eta grid projections values - these particular values
- // will be useful for calo people to see the eta grid lines at
- float[] etaGridPositions = { -4.9f, -3.2f, -2.5f, -1.375f, -0.8f,
- 0.8f, 1.375f, 2.5f, 3.2f, 4.9f };
-
- for(int i = 0; i < etaGridPositions.length; i++)
- {
- if (etaGridPositions[i] > minHoriz && etaGridPositions[i] < maxHoriz) {
- Point2D.Double startp = aWindow.calculateDisplay(etaGridPositions[i],minVert);
- Point2D.Double endp = aWindow.calculateDisplay(etaGridPositions[i],maxVert);
- svg.drawLine((int)startp.x,(int)startp.y,(int)endp.x,(int)endp.y);
- }
- }
-
- for (int i = (int)Math.ceil(minVert/90.)*90; i <= maxVert; i += 90)
- {
- Point2D.Double startp = aWindow.calculateDisplay(minHoriz,i);
- Point2D.Double endp = aWindow.calculateDisplay(maxHoriz,i);
- if (Math.abs(i) % 360 == 0) {
- svg.setColor(Color.WHITE);
- svg.setStroke(thickStroke);
- } else {
- svg.setColor(Color.LIGHT_GRAY);
- svg.setStroke(thinStroke);
- }
- svg.drawLine((int)startp.x,(int)startp.y,(int)endp.x,(int)endp.y);
- }
- }
-
- svg.dispose();
-
- }
-
- /**
- * This bit of the frame that is drawn when printing (appart from scales)
- */
- private void printBorderFrame(Graphics2D g, Color bg, int width, int height){
-
- // Make our own graphics contex, so we don't cause trouble elsewhere
- Graphics2D svg = (Graphics2D) g.create();
-
- svg.setColor(bg);
- //simply draw rectangles all around window
- svg.fillRect(0, 0, width, insets.top);
- // Added -insets.bottom because sometimes this stuff is transparent -Adam
- svg.fillRect(0, 0, insets.left, height - insets.bottom);
- svg.fillRect(width - insets.right, 0, insets.right, height);
- svg.fillRect(0, height - insets.bottom, width, insets.bottom);
-
- svg.dispose();
- }
-
- /**
- * Paint the Frame of the border with the given colors
- */
- private void paintBorderFrame(Graphics2D g, Color bg, int width, int height){
- //Draw the frame same as for printing
- printBorderFrame(g,bg,width,height);
-
- // Make our own graphics contex, so we don't cause trouble elsewhere
- Graphics2D svg = (Graphics2D) g.create();
-
- // Add a bit of GUI-look-and-feel frame
- if (selected){
- //white triangle bottom left corner - clears any background colour
- svg.setColor(AWindow.BORDER_SELECTED_FRAMELIGHT_COLOR);
- int xp[]={0,0,11,0};
- int yp[]={height-12,height,height,height-12};
- svg.fillPolygon(xp,yp,4);
- //blue border around window
- svg.setColor(AWindow.BORDER_SELECTED_FRAME_COLOR);
- svg.drawLine(0, 0, width-1, 0);
- svg.drawLine(0, 0, 0, height-10);
- svg.drawLine(width-1, 0, width-1, height-1);
- svg.drawLine(10, height-1, width-1, height-1);
- svg.drawLine(0, height-10, 9, height-1);
- //white inner border
- svg.setColor(AWindow.BORDER_SELECTED_FRAMELIGHT_COLOR);
- svg.drawLine(10, height-2, width-2, height-2);
- svg.drawLine(1, 1, 1, height-10);
- //grey triangle bottom left corner
- svg.setColor(AWindow.BORDER_BACKGROUND_COLOR);
- xp[2]=8;
- yp[0]=height-9;
- yp[3]=height-9;
- svg.fillPolygon(xp,yp,4);
- }
-
- svg.dispose();
- }
-
- /**
- * Paint a small box at the top of each window to describe what is on the window
- */
- private void paintWindowTitle(Graphics g, int width, int height, boolean highlight)
- {
- APar parameterStore = APar.instance();
-
- // Make our own graphics contex, so we don't cause trouble elsewhere
- Graphics2D svg = (Graphics2D) g.create();
- //Get Mode parameter
- String s=aWindow.getProjection().getName();
- parameterStore.selectWindowParameters(aWindow.getName());
- AParameter param=parameterStore.get(s, "Mode");
- int mode=param.getI();
- s=aWindow.getProjection().getScreenName();
- s+=" Projection";
- //Add mode text if not on standard view
- if (param != null)
- {
- if(mode != 0)
- {
- s+=" viewing: ";
- if(param instanceof ALinkParameter){
- s+=((ALinkParameter) param).getCurrentText();
- }else{
- s+=((AEnumeratorParameter) param).getCurrentText();
- }
- }
- }
- parameterStore.restoreWindowParameters();
- //Offset if indicator to window frame
- int Offset=2;
-
- int boxsize,y;
- // get the width of the text
- boxsize = svg.getFontMetrics().stringWidth(s)+Offset*2;
- //Get y position from offset
- y = Offset+svg.getFontMetrics().getHeight();
-
- //Get the x position from width of window
- int x = insets.left + (int) Math.round(((width-insets.left-boxsize)/2.0));
- //Draw background box and set text color
- //highlighting the active window if desired
- if(selected&&highlight)
- {
- //If selected and not printing eps
- //add a bit of GUI-look-and-feel frame
- svg.setColor(AWindow.BORDER_SELECTED_BACKGROUND_COLOR);
- svg.fillRect(x-2, 1, boxsize+4, y+1);
- svg.setColor(AWindow.BORDER_SELECTED_FRAME_COLOR);
- svg.fillRect(x-1, 0, boxsize+2, y+1);
- svg.setColor(AWindow.BORDER_SELECTED_FRAMELIGHT_COLOR);
- svg.fillRect(x, 1, boxsize, y-1);
- svg.setColor(AWindow.BORDER_SELECTED_BACKGROUND_COLOR);
- svg.fillRect(x+1, 1, boxsize-1, y-2);
- svg.setColor(AWindow.BORDER_SELECTED_FOREGROUND_COLOR);
- }
- else
- {
- //If not selected draw background box
- svg.setColor(AWindow.BORDER_BACKGROUND_COLOR);
- svg.fillRect(x-2, 0, boxsize+4, y+2);
- svg.setColor(AWindow.BORDER_FOREGROUND_COLOR);
- }
- //Draw text
- svg.drawString(s, x+Offset, y-3);
- //cleanup
- svg.dispose();
- }
-
- /**
- * Paint a small FishEye Indicator if FishEye projection is active.
- * At the moment, the indicator is drawn in the top right corner of the canvas.
- * One might as well put it in on the scale. Eventually, if the scales shows
- * proper fisheyed coordinates, it might not be needed anymore at all.
- */
- private void paintFishEyeIndicator(Graphics g, boolean forceText, int width, int height){
- APar parameterStore = APar.instance();
-
- //Probe for fishEye status
- boolean fishEyeStatus=false;
-
- //Check if FishEye is on for this particular window
- parameterStore.selectWindowParameters(aWindow.getName());
-
- //Get FishEye parameter
- AParameter fishEyePar = parameterStore.get(aWindow.getProjection().getName(), "FishEye");
-
- //Check if there is a fish-eye parameter for this projection, and get status (enabled or not)
- if (fishEyePar != null) fishEyeStatus=fishEyePar.getStatus();
-
- //Restore to active window
- parameterStore.restoreWindowParameters();
-
- // Now draw indicator if fisheye was on
- if (fishEyeStatus){
-
- // Make our own graphics contex, so we don't cause trouble elsewhere
- Graphics2D svg = (Graphics2D) g.create();
- //Offset if indicator to window frame
- int Offset=4;
- //Check if we have custom cursors - only then use indicator image
- if (!forceText ){
- //FishEye indicator image is provided by ACursorFactory as it is the same
- //as the cursor used in FishEye transformation.
- Image IndicatorImg = ACursorFactory.getInstance().getFishEyeIndicator();
- //Get the x position from width of window and width of image
- int x = width-Offset-IndicatorImg.getWidth(null);
- //Get y position from offset
- int y = Offset;
- //Draw an fisheye indicator in top right corner with some space
- svg.drawImage(IndicatorImg,x,y,null);
- } else {
- int x,y;
- //Get the x position from width of window and width of image
- x = width-Offset-svg.getFontMetrics().stringWidth("FishEye");
- //Get y position from offset
- y = Offset+svg.getFontMetrics().getHeight();
- //Set color to red
- svg.setColor(Color.red);
- //Use small label to indicate fisheye
- svg.drawString("FishEye",x,y);
-
- }
- //cleanup
- svg.dispose();
- }
- }
-
- /**
- * Recalculate the insets based on the current font size.
- */
- private void resetInsets()
- {
- int lb = (int) (2 + 2 + AScale.getPrimaryTickSize() + 1.5 * fontSize);
- // int tr = (int) (2+2+AScale.getPrimaryTickSize());
- int tr = 2;
-
- if (drawScaleBorder)
- insets = new Insets(tr, lb, lb, tr);
- else
- insets = new Insets(tr, tr, tr, tr);
- }
-
- /**
- * Set the scale labels taking into account the given linear transformation.
- */
- public void setScales(String horizLabel, String vertLabel, String horizUnits, String vertUnits, AffineTransform transform, int panelWidth, int panelHeight)
- {
-
- // Determine the type of the tranform.
- int type = classifyTransform(transform);
-
- switch (type)
- {
- case TYPE_PARALLEL_TRANSFORM:
- setAxisLabels(horizLabel, vertLabel);
- setAxisUnits(horizUnits, vertUnits);
- break;
-
- case TYPE_SWITCHED_TRANSFORM:
- setAxisLabels(vertLabel, horizLabel);
- setAxisUnits(vertUnits, horizUnits);
- break;
-
- case TYPE_Y_SKEW_TRANSFORM:
- setAxisLabels(horizLabel + AMath.PRIME, AMath.DELTA + vertLabel);
- if (horizUnits.equals(vertUnits))
- {
- setAxisUnits(horizUnits, vertUnits);
- }
- else
- {
- setAxisUnits(horizUnits + AMath.DOT + vertUnits, vertUnits);
- }
- break;
-
- case TYPE_X_SKEW_TRANSFORM:
- setAxisLabels(AMath.DELTA + horizLabel, vertLabel + AMath.PRIME);
- if (vertUnits.equals(horizUnits))
- {
- setAxisUnits(horizUnits, vertUnits);
- }
- else
- {
- setAxisUnits(horizUnits, vertUnits + AMath.DOT + horizUnits);
- }
- break;
-
- case TYPE_SWITCHED_Y_SKEW_TRANSFORM:
- setAxisLabels(vertLabel + AMath.PRIME, AMath.DELTA + horizLabel);
- if (vertUnits.equals(horizUnits))
- {
- setAxisUnits(vertUnits, horizUnits);
- }
- else
- {
- setAxisUnits(vertUnits + AMath.DOT + horizUnits, horizUnits);
- }
- break;
-
- case TYPE_SWITCHED_X_SKEW_TRANSFORM:
- setAxisLabels(AMath.DELTA + vertLabel, horizLabel + AMath.PRIME);
- if (horizUnits.equals(vertUnits))
- {
- setAxisUnits(vertUnits, horizUnits);
- }
- else
- {
- setAxisUnits(vertUnits, horizUnits + AMath.DOT + vertUnits);
- }
- break;
-
- default:
- setAxisLabels(horizLabel + AMath.PRIME, vertLabel + AMath.PRIME);
- if (horizUnits.equals(vertUnits))
- {
- setAxisUnits(horizUnits, vertUnits);
- }
- else
- {
- setAxisUnits(horizUnits + AMath.DOT + vertUnits, vertUnits + AMath.DOT + horizUnits);
- }
- break;
- }
-
- // Get the size of the scales.
- axisPts[0] = 0.;
- axisPts[1] = panelHeight;
- axisPts[2] = 0.;
- axisPts[3] = panelHeight;
- axisPts[4] = panelWidth;
- axisPts[5] = 0.;
- try
- {
- // Avoid using the following call because of a bug in
- // AffineTransform. Instead create the inverse matrix
- // explicitly as done below.
- // transform.inverseTransform(physicsPt,0,physicsPt,0,3);
- AffineTransform ixform = transform.createInverse();
-
- ixform.transform(axisPts, 0, axisPts, 0, 1);
- ixform.deltaTransform(axisPts, 2, axisPts, 2, 2);
-
- // Calculate the values for the vertical axis and the distance.
- double vdy = axisPts[3];
- double vdx = axisPts[2];
- double vdist = Math.sqrt(vdx * vdx + vdy * vdy);
-
- // Calculate the values for the horizontal axis and the distance.
- double hdy = axisPts[5];
- double hdx = axisPts[4];
- double hdist = Math.sqrt(hdx * hdx + hdy * hdy);
-
- // Initialize the endpoints of the axes.
- double vmin = 0.;
- double vmax = 0.;
- double hmin = 0.;
- double hmax = 0.;
-
- // Do what is necessary for the different types of transformations.
- switch (type)
- {
- case (TYPE_PARALLEL_TRANSFORM):
- {
- double vsign = (vdy < 0.) ? 1. : -1.;
-
- vmin = axisPts[1];
- vmax = axisPts[1] + vsign * vdist;
-
- double hsign = (hdx > 0.) ? 1. : -1.;
-
- hmin = axisPts[0];
- hmax = axisPts[0] + hsign * hdist;
- break;
- }
-
- case (TYPE_SWITCHED_TRANSFORM):
- {
- double hsign = (hdy > 0.) ? 1. : -1.;
-
- hmin = axisPts[1];
- hmax = axisPts[1] + hsign * hdist;
-
- double vsign = (vdx < 0.) ? 1. : -1.;
-
- vmin = axisPts[0];
- vmax = axisPts[0] + vsign * vdist;
- break;
- }
-
- case (TYPE_Y_SKEW_TRANSFORM):
- {
- double vsign = (vdy > 0.) ? 1. : -1.;
-
- vmax = -vsign * vdist / 2.;
- vmin = -vmax;
-
- hmin = 0.;
- hmax = hdist;
- break;
- }
-
- case (TYPE_X_SKEW_TRANSFORM):
- {
- double hsign = (hdx > 0.) ? 1. : -1.;
-
- hmax = hsign * hdist / 2.;
- hmin = -hmax;
-
- vmin = 0.;
- vmax = vdist;
- break;
- }
-
- case (TYPE_SWITCHED_Y_SKEW_TRANSFORM):
- {
- double vsign = (vdx > 0.) ? 1. : -1.;
-
- vmax = -vsign * vdist / 2.;
- vmin = -vmax;
-
- hmin = 0.;
- hmax = hdist;
- break;
- }
-
- case (TYPE_SWITCHED_X_SKEW_TRANSFORM):
- {
- double hsign = (hdy > 0.) ? 1. : -1.;
-
- hmax = hsign * hdist / 2.;
- hmin = -hmax;
-
- vmin = 0.;
- vmax = vdist;
- break;
- }
-
- default:
- {
- vmin = 0.;
- vmax = 0.;
- hmin = 0.;
- hmax = 0.;
- break;
- }
- }
-
- // Actually set the limits.
- setLimits(hmin, hmax, vmin, vmax);
- }
- catch (NoninvertibleTransformException e)
- {
- setLimits(0., 0., 0., 0.);
- }
- }
-
- /**
- * This is a protected utility method which classifies the given transform
- * into seven categories: parallel, switched, x-skew, y-skew, switched
- * x-skew, switched y-skew, and general. The parallel category describes
- * transformations in which the transformed x and y axes are parallel or
- * antiparallel to the original x and y axes, respectively. The switched
- * category describes transformations in which the transformed x and y axes
- * are parallel or antiparallel to the original y and x axes, respectively.
- * That is, the x and y axes have been switched. The x-skew describes
- * transformations in which the transformed x-axis is parallel (or
- * antiparallel) to the original one while the transformed y-axis forms some
- * non-zero angle to the original one. The y-skew is similar; the switch
- * skews are just rotated (counter)clockwise by 90 degrees. The general
- * category encompasses all transforms not falling into one of the other
- * categories.
- */
- static protected int classifyTransform(AffineTransform xform)
- {
- // Set the default return type to a general matrix.
- int category = TYPE_GENERAL_TRANSFORM;
-
- // Get the four non-translation quantities from the transformation.
- double sx = xform.getScaleX();
- double sy = xform.getScaleY();
- double kx = xform.getShearX();
- double ky = xform.getShearY();
-
- // Check the type.
- if (kx == 0. && ky == 0.)
- {
- category = TYPE_PARALLEL_TRANSFORM;
- }
- else if (sx == 0. && sy == 0.)
- {
- category = TYPE_SWITCHED_TRANSFORM;
- }
- else if (kx == 0.)
- {
- category = TYPE_Y_SKEW_TRANSFORM;
- }
- else if (ky == 0.)
- {
- category = TYPE_X_SKEW_TRANSFORM;
- }
- else if (sx == 0.)
- {
- category = TYPE_SWITCHED_Y_SKEW_TRANSFORM;
- }
- else if (sy == 0.)
- {
- category = TYPE_SWITCHED_X_SKEW_TRANSFORM;
- }
-
- // Return the transformtion type.
- return category;
- }
-
- /**
- * A utility which makes an AffineTransform given three corner
- * points. The first point must be the upper, left-hand corner
- * point, the second, the upper, right-hand corner point, and the
- * third, the lower, right-hand corner point.
- *
- * @return AffineTransform which does the appropriate mapping */
- protected AffineTransform makeTransform(Point2D.Double[] corners)
- {
- double x0 = corners[0].x;
- double y0 = corners[0].y;
- double x1 = corners[1].x;
- double y1 = corners[1].y;
- double x2 = corners[2].x;
- double y2 = corners[2].y;
-
- double sx = 0.;
- double kx = 0.;
- double tx = 0.;
- double sy = 0.;
- double ky = 0.;
- double ty = 0.;
-
- double delta = (x2 * (y1 - y0) - x1 * (y2 - y0) + x0 * (y2 - y1));
-
- if (delta == 0)
- {
- // cannot successfully create an AffineTransform
- System.err.println("Fatal Error: AffineTransform creating failed.");
- System.err.println("Possible cause: wrong user corner values are set.");
- System.exit(1);
- return null;
- }
- else
- {
- delta = 1. / delta;
-
- double w = aWindow.getWidth();
- double h = aWindow.getHeight();
-
- sx = -(delta * w) * (y2 - y1);
- kx = (delta * w) * (x2 - x1);
- tx = -(x0 * sx + y0 * kx);
-
- ky = (delta * h) * (y1 - y0);
- sy = -(delta * h) * (x1 - x0);
- ty = -(x0 * ky + y0 * sy);
-
- return new AffineTransform(sx, ky, kx, sy, tx, ty);
- }
-
- }
-
- public void drawString(Graphics2D g, String str, double x, double y, int horizontal, int vertical, int maxSize)
- {
- drawString(g, str, x, y, horizontal, vertical, false, null, 0, false, null, maxSize);
- }
-
- private void drawString(Graphics2D g, String str, double x, double y, int horizontal, int vertical, boolean framed, Color frameColor, double frameWidth, boolean banner, Color bannerColor, int maxSize)
- {
- Font sf = g.getFont();
- int width = sf.getSize();
- int descent = 0;
- int height = sf.getSize();
- int adjustment = 0;
-
- // The metrics stuff did not work, so I made a work around and now
- // even ps-printing works (CT 27/7/2004)
- double xx = Math.min(x, maxSize - width / 2);
- Rectangle textSize = new Rectangle(0, descent - height, width, height);
- Point2D textUL = drawFrameAndBanner(xx, y, textSize, adjustment, framed, frameColor, frameWidth, banner, bannerColor, horizontal, vertical);
-
- if (g instanceof AAbstractGraphics2D) {
- // No antialiasing support needed for EPS output.
- g.drawString(str, (int) textUL.getX(), (int) textUL.getY());
- } else {
- // For pixel graphics, switch on antialiasing for text.
- g.setRenderingHint(RenderingHints.KEY_ANTIALIASING, RenderingHints.VALUE_ANTIALIAS_ON);
- g.drawString(str, (int) textUL.getX(), (int) textUL.getY());
- g.setRenderingHint(RenderingHints.KEY_ANTIALIASING, RenderingHints.VALUE_ANTIALIAS_OFF);
- }
- }
-
- /** Draws frame and banner around a string. The method calculates and returns
- * the point to which the text curser should be set before drawing the string. */
- private Point2D drawFrameAndBanner(double x, double y, Rectangle textSize, int adjustment, boolean framed, Color frameColor, double frameWidth, boolean banner, Color bannerColor, int horizontal, int vertical)
- {
- double descent = textSize.y + textSize.height;
- x = getXalignment(x, textSize.width, horizontal);
- y = getYalignment(y, textSize.height, (int) descent, vertical);
- return new Point2D.Double(x, y);
- }
-
- private static double getYalignment(double y, int ascent, int descent, int alignment)
- {
- // vertical alignment
- switch (alignment)
- {
- case TEXT_TOP:
- y = y + ascent - descent;
- break;
-
- case TEXT_CENTER:
- y = y + ((ascent + descent) / 2) - descent;
- break;
-
- case TEXT_BOTTOM:
- y = y - descent;
- break;
-
- case TEXT_BASELINE:
- default:
- break;
- }
- return y;
- }
-
- private static double getXalignment(double x, int width, int alignment)
- {
- // horizontal alignment
- switch (alignment)
- {
- case TEXT_CENTER:
- x = x - (width / 2);
- break;
-
- case TEXT_RIGHT:
- x = x - width;
- break;
-
- case TEXT_LEFT:
- default:
- break;
- }
- return x;
- }
-
- /**
- * Encapsulates units and range for an axis.
- * Used for m->cm->mm->um autoscaling.
- */
- private static class ScaleUnits {
- final String units;
- final double scaleFactor;
-
- ScaleUnits(String units, double min, double max) {
- double maxMod = Math.max(Math.abs(max), Math.abs(min));
- if (!units.equals("(cm)")) {
- this.units = units;
- this.scaleFactor = 1.0;
- return;
- }
- else {
- if (maxMod > 200.)
- {
- this.scaleFactor= 0.01;
- this.units = "(m) ";
- }
- else if (maxMod > 2.)
- {
- this.scaleFactor = 1.0;
- this.units = "(cm)";
- }
- else if (maxMod > .2)
- {
- this.scaleFactor = 10.;
- this.units = "(mm)";
- }
- else
- {
- this.scaleFactor = 10000.;
- this.units = "(" + AMath.MICRO + "m)";
- }
- }
- }
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/canvas/ATitleMenuBar.java b/graphics/AtlantisJava/src/atlantis/canvas/ATitleMenuBar.java
deleted file mode 100755
index 85ad9daab25..00000000000
--- a/graphics/AtlantisJava/src/atlantis/canvas/ATitleMenuBar.java
+++ /dev/null
@@ -1,92 +0,0 @@
-package atlantis.canvas;
-
-import javax.swing.JLabel;
-import javax.swing.JMenuBar;
-import java.awt.Font;
-import java.awt.FontMetrics;
-import java.awt.Graphics;
-
-import atlantis.event.AEvent;
-import atlantis.event.AEventManager;
-import atlantis.graphics.AGraphics;
-import atlantis.parameters.APar;
-
-
-public class ATitleMenuBar extends JMenuBar
-{
-
- public ATitleMenuBar()
- {
- // just to set the height of the title bar
-
- JLabel atlas = new JLabel(" Atlantis ");
- atlas.setFont(new Font("Courier", Font.PLAIN, 25));
- add(atlas);
- }
-
- @Override
- public void paint(Graphics g)
- {
- AEventManager eventManager = AEventManager.instance();
- AEvent event = eventManager.getCurrentEvent();
- Font titleFont=new Font("Dialog", Font.BOLD, 15);
- int availableSpace = (int) Math.floor(getWidth()-10);
- FontMetrics fm = ACanvas.getCanvas().getFontMetrics(titleFont);
-
- AGraphics ag=AGraphics.makeAGraphics(g);
- ag.setColor(AWindow.BORDER_BACKGROUND_COLOR);
- ag.fillRect(0, 0, getWidth(), getHeight());
- ag.setColor(AWindow.BORDER_FOREGROUND_COLOR);
- ag.updateColor();
- ag.setFont(titleFont);
- availableSpace -= fm.stringWidth("ATLAS Atlantis");
- ag.drawString("ATLAS ", 5, getHeight()-10);
- ag.drawString(" Atlantis", getWidth()-fm.stringWidth(" Atlantis")-5, getHeight()-10);
-
- String[] titleSections = new String[6];
- if(event != null)
- {
- titleSections[0] = !event.getDateTime().equals("n/a") ? event.getDateTime() : "";
- titleSections[1] = " source:" + event.getSourceName();
- int extension_dot = titleSections[1].toLowerCase().lastIndexOf(".");
- if(extension_dot > 0)
- titleSections[1] = titleSections[1].substring(0,extension_dot);
- titleSections[2] = " run:" + event.getRunNumber();
- titleSections[3] = " ev:" + event.getEventNumber();
- titleSections[4] = " lumiBlock:" + event.getLumiBlock();
- titleSections[5] = " eventProperties: " + event.getEventProperties();
- }
- else
- {
- titleSections[0]="";
- titleSections[1]=" event:n/a";
- titleSections[2]=" run:n/a";
- titleSections[3]=" ev:n/a";
- titleSections[4]="";
- titleSections[5]="";
- }
-
-
- //for masterclass turn off some of the canvas title parts
- APar parameterStore = APar.instance();
- if(parameterStore.get("Minerva","hiderun").getStatus())
- titleSections[2]="";
- if(parameterStore.get("Minerva","hideev").getStatus())
- titleSections[3]="";
-
-
- StringBuilder outputString = new StringBuilder();
- int titleSectionSize=0;
- for(int i=0; i<6; i++)
- {
- if(titleSectionSize+fm.stringWidth(titleSections[i])<availableSpace)
- {
- if(!titleSections[i].endsWith("default")){
- titleSectionSize+=fm.stringWidth(titleSections[i]);
- outputString.append(titleSections[i]);
- }
- }
- }
- ag.drawString(outputString.toString(), (getWidth()-titleSectionSize)/2, getHeight()-10);
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/canvas/AWindow.java b/graphics/AtlantisJava/src/atlantis/canvas/AWindow.java
deleted file mode 100755
index 159623e227c..00000000000
--- a/graphics/AtlantisJava/src/atlantis/canvas/AWindow.java
+++ /dev/null
@@ -1,1549 +0,0 @@
-package atlantis.canvas;
-
-import java.awt.Color;
-import java.awt.Dimension;
-import java.awt.Font;
-import java.awt.Graphics;
-import java.awt.Graphics2D;
-import java.awt.GraphicsEnvironment;
-import java.awt.Insets;
-import java.awt.Point;
-import java.awt.Rectangle;
-import java.awt.RenderingHints;
-import java.awt.datatransfer.DataFlavor;
-import java.awt.datatransfer.Transferable;
-import java.awt.dnd.DnDConstants;
-import java.awt.dnd.DragGestureEvent;
-import java.awt.dnd.DragGestureListener;
-import java.awt.dnd.DragSource;
-import java.awt.dnd.DragSourceDragEvent;
-import java.awt.dnd.DragSourceDropEvent;
-import java.awt.dnd.DragSourceEvent;
-import java.awt.dnd.DragSourceListener;
-import java.awt.dnd.DropTarget;
-import java.awt.dnd.DropTargetDragEvent;
-import java.awt.dnd.DropTargetDropEvent;
-import java.awt.dnd.DropTargetEvent;
-import java.awt.dnd.DropTargetListener;
-import java.awt.event.ActionEvent;
-import java.awt.event.ActionListener;
-import java.awt.geom.Point2D;
-import java.awt.geom.Point2D.Double;
-import java.awt.image.BufferedImage;
-import java.awt.image.DataBuffer;
-
-import java.util.Hashtable;
-import java.util.LinkedList;
-import java.util.Stack;
-import java.util.Vector;
-
-import javax.swing.JPanel;
-import javax.swing.JPopupMenu;
-import javax.swing.JSeparator;
-import javax.swing.JToolTip;
-import javax.swing.event.ChangeEvent;
-import javax.swing.event.ChangeListener;
-
-import org.w3c.dom.NamedNodeMap;
-import org.w3c.dom.Node;
-
-import atlantis.globals.AGlobals;
-import atlantis.graphics.ACoord;
-import atlantis.graphics.dnd.ACallBack;
-import atlantis.graphics.dnd.ADnDLabel;
-import atlantis.graphics.dnd.AObjectTransferable;
-import atlantis.gui.AColorHelpDialog;
-import atlantis.gui.AInteractionToolBar;
-import atlantis.gui.APreferencesControl;
-import atlantis.interactions.AInteraction;
-import atlantis.interactions.AInteractionsManager;
-import atlantis.interactions.ASelection;
-import atlantis.interactions.ARectangleVPSelection;
-import atlantis.interactions.ARectangleYXSelection;
-import atlantis.interactions.AZMRInteraction;
-import atlantis.output.ALogInterface;
-import atlantis.output.AOutput;
-import atlantis.parameters.APar;
-import atlantis.projection.AProjection;
-import atlantis.projection.AProjection2D;
-import atlantis.projection.AProjectionNPhysics;
-import atlantis.projection.AProjectionTrackResidual;
-import atlantis.projection.AProjectionsManager;
-import atlantis.utils.AMath;
-
-import atlantis.utils.ALogger;
-import java.awt.BorderLayout;
-import javax.swing.JComponent;
-
-/**
- * The objects of this class are single windows managed by ACanvas
- * This class manages the painting of each picture and is always
- * called by the java awt event thread. Programatic requests for
- * picture updates are handled by calls to repaintFromScratch() which
- * adds requests to the awt event thread.
- * It paints first into an off-screen buffer which is then copied
- * onto the screen.
- * It handles the linear transformation from user to display
- * coordinates and vice-versa. Non-linear transformations are handled by
- * by the projections. Windows have a scale (and scale border) which
- * may be visible or not. Each window has an associated projection
- * and an interactionManager which knows about the current interaction
- * and the state of all other interactions for this window.
- *
- * @author taylorg
- */
-public class AWindow extends JPanel implements DropTargetListener,
- DragSourceListener, DragGestureListener, ACallBack
-{
-
- private static ALogger logger = ALogger.getLogger(AWindow.class);
- private static AGlobals globals = AGlobals.instance();
-
- //Whether horizontal or vertical scale is copied when window is dragged
- private static enum dragActionType { COPY_VERTICAL_SCALE, COPY_HORIZONTAL_SCALE };
-
- //these colors are used on the scale border and title bar
- static final Color BORDER_FOREGROUND_COLOR = new Color(48,48,48);
- static final Color BORDER_SELECTED_FOREGROUND_COLOR = new Color(48,48,48);
- static final Color BORDER_SELECTED_FRAME_COLOR = new Color(99,130,191);
- static final Color BORDER_SELECTED_FRAMELIGHT_COLOR = new Color(255,255,255);
- // These ones must be public and cannot be final because AOpenGLControl messes with them.
- public static Color BORDER_BACKGROUND_COLOR = new Color(224,224,224);
- public static Color BORDER_SELECTED_BACKGROUND_COLOR = new Color(200,221,242);
- private dragActionType dragAction;
- private boolean canCopyScales = false;
- private DragSource dragSource = null;
- private Graphics2D backingGraphics = null;
- private BufferedImage backingImage = null;
- private Dimension backingDimension = new Dimension();
-
- /**
- * The border of the window holds a scale with units
- **/
- private AScaleBorder scaleBorder;
-
- private boolean bufferValid = false;
- private boolean borderValid = false;
- private Insets insets = new Insets(0, 0, 0, 0);
- private double m00, m01, m02, m10, m11, m12, n00, n01, n02, n10, n11, n12;
- private AInteractionsManager interactionsManager;
- private Hashtable<String, Double[]> corners;
- private Point2D.Double[] userCorners;
- private Point2D.Double[] defaultCorners;
- private AProjection projection;
- private String group;
- private String defaultGroup;
- private String defaultProjectionName;
- private int index;
- boolean finalized;
- private Stack<Point2D.Double[]> cornersHistory = new Stack<Point2D.Double[]>();
- private AProjection projectionHistory = null;
- private Stack<Integer> zoomSummed = new Stack<Integer>();
- private Stack<Integer> zoomLayers = new Stack<Integer>();
- private Stack<Integer> zoomCalo = new Stack<Integer>();
- private Stack<Integer> zoomCaloLAr = new Stack<Integer>();
- private Stack<Integer> modeHistory = new Stack<Integer>();
- private Stack<Integer> cutHistoryLAr = new Stack<Integer>();
- private Stack<Integer> cutHistoryHEC = new Stack<Integer>();
- private Stack<Integer> layoutHistory = new Stack<Integer>();
- private boolean locked;
- private static JPopupMenu popupMenu;
- private final static String LOCK = "Freeze";
- private final static String UNLOCK = "Unfreeze";
- private final static String HORIZONTAL_FLIP = "Horizontal Flip";
- private final static String VERTICAL_FLIP = "Vertical Flip";
- private final static String ROTATE_BY_90_CLOCKWISE = "Rotate by 90";
- private final static String ROTATE_BY_90_ANTICLOCKWISE = "Rotate by -90";
- private final static String TOGGLE_SCALE = "Toggle Scale";
- private final static String RESTORE_DEFAULTS = "Restore Initial Size";
-
- private JComponent m_view = null;
-
- static
- {
- popupMenu = new JPopupMenu();
- ActionListener actionListener = new PopupMenuActionListener();
- popupMenu.add(HORIZONTAL_FLIP).addActionListener(actionListener);
- popupMenu.add(VERTICAL_FLIP).addActionListener(actionListener);
- popupMenu.add(new JSeparator());
- popupMenu.add(ROTATE_BY_90_CLOCKWISE).addActionListener(actionListener);
- popupMenu.add(ROTATE_BY_90_ANTICLOCKWISE).addActionListener(
- actionListener);
- popupMenu.add(new JSeparator());
- popupMenu.add(TOGGLE_SCALE).addActionListener(actionListener);
- popupMenu.add(RESTORE_DEFAULTS).addActionListener(actionListener);
- popupMenu.add(LOCK).addActionListener(actionListener);
- popupMenu.add(UNLOCK).addActionListener(actionListener);
- }
-
-
- private static class PopupMenuActionListener
- implements ActionListener
- {
- public void actionPerformed(ActionEvent e)
- {
- String action = e.getActionCommand();
- AWindow window = ACanvas.getCanvas().getCurrentWindow();
- if(action.equals(LOCK))
- {
- window.setLocked(true);
- }
- else if(action.equals(UNLOCK))
- {
- window.setLocked(false);
- }
- else if(action.equals(TOGGLE_SCALE))
- {
- window.toggleScale();
- }
- // temporary fix to avoid crashes
- if(window.getProjection() instanceof AProjection2D)
- {
- if(action.equals(RESTORE_DEFAULTS))
- {
- window.unzoomFull();
- }
- else if(action.equals(HORIZONTAL_FLIP))
- {
- AZMRInteraction.performFlip(AZMRInteraction.
- getMiddleVerticalLine(window),
- window);
- }
- else if(action.equals(VERTICAL_FLIP))
- {
- AZMRInteraction.performFlip(AZMRInteraction.
- getMiddleHorizontalLine(window),
- window);
- }
- else if(action.equals(ROTATE_BY_90_CLOCKWISE))
- {
- AZMRInteraction.performPlus90Rotation(window);
- }
- else if(action.equals(ROTATE_BY_90_ANTICLOCKWISE))
- {
- AZMRInteraction.performMinus90Rotation(window);
- }
- }
- }
- }
-
- /**
- * Construct AWindow using information in XML configuration file.
- *
- * @param node the XML configuration node for this window
- * @param index identifier for the window
- * @return the constructed window
- */
- static AWindow createFromXMLConfigNode(Node node, int index) {
- NamedNodeMap attributes = node.getAttributes();
- String name = attributes.getNamedItem("name").getNodeValue();
- String defaultProjectionName = attributes.getNamedItem("projection").
- getNodeValue();
- String defaultGroup = attributes.getNamedItem("group").getNodeValue();
- return new AWindow(name,defaultProjectionName,defaultGroup,index);
- }
-
- /**
- * Construct AWindow with given name, default projection and group name.
- * Only non-private in order to allow test code to create an AWindow instance.
- *
- * @param name title of window
- * @param defaultProjection name of default projection
- * @param defaultGroup name of group
- * @param index identifier for window
- */
- AWindow(String name, String defaultProjection, String defaultGroup, int index)
- {
- super(new BorderLayout());
- setName(name);
- this.defaultProjectionName = defaultProjection;
- this.defaultGroup = defaultGroup;
- setOpaque(false);
- if (!globals.getUseOpenGL()) {
- m_view = new AWindowSwingView(this);
- } else {
- m_view = new AWindowGLView(this);
- }
- this.index = index;
- scaleBorder = new AScaleBorder(this);
- scaleBorder.setLabelFont(new Font("Dialog", Font.PLAIN, 12));
- m_view.setBorder(scaleBorder);
- add(m_view, BorderLayout.CENTER);
- finalized = false;
-
- if (!AGlobals.isAtlantisHeadless()) {
- dragSource = new DragSource();
- dragSource.createDefaultDragGestureRecognizer(this,
- DnDConstants.ACTION_MOVE, this);
-
- this.setDropTarget(new DropTarget(this, this));
- }
- }
-
- /**
- * Perform the steps that have to follow the ACanvas initialization.
- * Despite its name, this method is called from ACanvas.setCurrentLayout()
- * so may be called multiple times on the same window.
- */
- void finalizeConstruction()
- {
- setInteractionManager(new AInteractionsManager(this));
- corners = new Hashtable<String, Double[]>();
- String[] pName = AProjectionsManager.getKnownProjectionNames();
- Point2D.Double[] pCorners;
- ALayout l = ACanvas.getCanvas().getCurrentLayout();
- Dimension size = l.getWindowConstraints(getName()).getSize();
- for(int i = 0; i < pName.length; i++)
- {
- AProjection proj = AProjectionsManager.getProjection(pName[i]);
- if(proj instanceof AProjection2D)
- {
- pCorners = ((AProjection2D) proj).calculateNoZoomCorners(size);
- corners.put(pName[i], pCorners);
- }
- }
- AProjection defaultProjection = AProjectionsManager.getProjection(
- defaultProjectionName);
- setGroup(defaultGroup);
- setProjection(defaultProjection);
-
- if (!AGlobals.isAtlantisHeadless()) {
- interactionsManager.setContext(getInteractionToolBar().getSelectedGroup());
- }
-
- finalized = true;
- }
-
-
- void restoreDefaults()
- {
- if(finalized)
- {
- corners = new Hashtable<String, Double[]>();
- String[] pName = AProjectionsManager.getKnownProjectionNames();
- Point2D.Double[] pCorners;
- ALayout l = ACanvas.getCanvas().getCurrentLayout();
- Rectangle r = l.getWindowConstraints(getName());
- Dimension size = new Dimension(1, 1);
- if(r != null)
- size = r.getSize();
- for(int i = 0; i < pName.length; i++)
- {
- AProjection proj = AProjectionsManager.getProjection(pName[i]);
- if(proj instanceof AProjection2D)
- {
- if(pName[i].equals(defaultProjectionName) && defaultCorners != null)
- pCorners = getDefaultCorners();
- else
- pCorners = ((AProjection2D) proj).calculateNoZoomCorners(size);
- corners.put(pName[i], pCorners);
- }
- }
- AProjection defaultProjection = AProjectionsManager.getProjection(
- defaultProjectionName);
- setGroup(defaultGroup);
- projection = null;
- setProjection(defaultProjection);
- getInteractionManager().forgetContext();
- AInteractionToolBar itb = getInteractionToolBar();
- if (itb != null) {
- itb.setDefaultGroup();
- interactionsManager.setContext(itb.getSelectedGroup());
- }
- setScaleStatus(true);
- }
- }
-
-
- public boolean isCurrent()
- {
- return ACanvas.getCanvas().getCurrentWindowName().equals(getName());
- }
-
-
- public static JPopupMenu getPopupMenu()
- {
- return popupMenu;
- }
-
-
- public int getIndex()
- {
- return index;
- }
-
-
- public String getGroupName()
- {
- return group;
- }
-
-
- public void setGroup(String group)
- {
- this.group = group;
- this.fireGroupChange();
- }
-
-
- public synchronized AProjection getProjection()
- {
- return projection;
- }
-
-
- public AInteractionToolBar getInteractionToolBar()
- {
- return AInteractionToolBar.getInteractionToolBar(getName(),
- projection.getName());
- }
-
-
- public synchronized void setProjection(AProjection newProjection)
- {
- if((projection == null) || (!newProjection.equals(projection))
- || (newProjection instanceof AProjectionTrackResidual)
- || (newProjection instanceof AProjectionNPhysics))
- {
- if(projection != null && projection instanceof AProjection2D)
- corners.put(projection.getName(), userCorners);
- this.projection = newProjection;
- if(projection instanceof AProjection2D)
- userCorners = (Point2D.Double[]) corners.get(projection.getName());
- //check to see if the scales need hiding or not
- this.scaleBorder.hideScale();
- this.repaintFromScratch();
- this.fireProjectionChange();
- }
- }
-
-
- private Point2D.Double[] clonedCopy(Point2D.Double[] corners)
- {
- if(corners == null)return null;
- Point2D.Double[] newCorners = new Point2D.Double[corners.length];
- for(int i = 0; i < corners.length; i++)
- newCorners[i] = new Point2D.Double(corners[i].x, corners[i].y);
- return newCorners;
- }
-
-
- public synchronized void setUserCorners(Point2D.Double[] corners)
- {
- if(projection != null)
- {
- Point2D.Double[] validCorners = null;
- try
- {
- validCorners = ((AProjection2D) projection).validateCorners(
- clonedCopy(corners));
- }
- catch(ClassCastException e)
- {
- logger.error("Not a 2D projection...");
- validCorners = corners;
- }
- if(validCorners != null)
- {
- this.userCorners = validCorners;
- if(ACanvas.getCanvas().customisedCorner)
- {
- this.defaultCorners = validCorners;
- }
- repaintFromScratch();
- }
- }
- }
-
-
- public boolean getUnzoomPossible()
- {
- if(zoomSummed.size()>0 && ((Integer) zoomSummed.peek()).intValue()==cornersHistory.size())
- return false;
- else if(zoomLayers.size()>0 && ((Integer) zoomLayers.peek()).intValue()==cornersHistory.size())
- return false;
- else if(zoomCalo.size()>0 && ((Integer) zoomCalo.peek()).intValue()==cornersHistory.size())
- return false;
- else if(zoomCaloLAr.size()>0 && ((Integer) zoomCaloLAr.peek()).intValue()==cornersHistory.size())
- return false;
- else
- return projection == projectionHistory && cornersHistory.size() > 0;
- }
-
- public boolean getUnzoomFullPossible()
- {
- return projection == projectionHistory && cornersHistory.size() > 0;
- }
-
-
- public boolean getUnzoomAllPossible(String typeOfZoom)
- {
- if(cornersHistory.size()<=0)
- return false;
- else if(ARectangleVPSelection.ZOOM_LAR.equals(typeOfZoom) ||
- ARectangleVPSelection.ZOOM_CALORIMETERS.equals(typeOfZoom))
- {
- int indexOfZoomCalo=-1;
- if(zoomCalo.size()>0)
- indexOfZoomCalo=((Integer) zoomCalo.peek()).intValue();
- int indexOfZoomCaloLAr=-1;
- if(zoomCaloLAr.size()>0)
- indexOfZoomCaloLAr=((Integer) zoomCaloLAr.peek()).intValue();
- //make sure summed/layers is last in list
- if(ARectangleVPSelection.ZOOM_CALORIMETERS.equals(typeOfZoom) &&
- indexOfZoomCalo > indexOfZoomCaloLAr)
- {
- return true;
- }
- else if(typeOfZoom.equals(ARectangleVPSelection.ZOOM_LAR) &&
- indexOfZoomCaloLAr > indexOfZoomCalo)
- {
- return true;
- }
- else
- return false;
- }
- else
- {
- int indexOfZoomSummed=-1;
- if(zoomSummed.size()>0)
- indexOfZoomSummed=((Integer) zoomSummed.peek()).intValue();
- int indexOfZoomLayers=-1;
- if(zoomLayers.size()>0)
- indexOfZoomLayers=((Integer) zoomLayers.peek()).intValue();
- //make sure summed/layers is last in list
- if(typeOfZoom.equals(ARectangleYXSelection.ZOOM_SUMMED) && indexOfZoomSummed>indexOfZoomLayers)
- {
- return true;
- }
- else if(typeOfZoom.equals(ARectangleYXSelection.ZOOM_LAYERS) && indexOfZoomLayers>indexOfZoomSummed)
- {
- return true;
- }
- else
- return false;
- }
- }
-
-
- public void unzoom(String typeOfZoom)
- {
- //do unzoom of which item is selected
- int numberOfWindows=0,indexOfZoom;
- if(typeOfZoom.equals(ARectangleVPSelection.ZOOM_LAR) ||
- typeOfZoom.equals(ARectangleYXSelection.ZOOM_SUMMED))
- {
- numberOfWindows=4;
- }
- else if(ARectangleVPSelection.ZOOM_CALORIMETERS.equals(typeOfZoom) ||
- typeOfZoom.equals(ARectangleYXSelection.ZOOM_LAYERS))
- {
- numberOfWindows=8;
- }
- int numberOfUnlayouts=0;
- for (int i = 0; i < numberOfWindows; i++)
- {
- String wName = Integer.toString(i+1);
- AWindow w = ACanvas.getCanvas().getWindow(wName);
- //find if can do unzoom and what index it is
- indexOfZoom=findUnzoomIndex(typeOfZoom, w);
- if(indexOfZoom>0)
- {
- //do all unzooms upto and including index of this zoom to unzoom
- while(w.cornersHistory.size()>=indexOfZoom)
- w.unzoom();
- //also need to reset parameters
- setParameters(typeOfZoom, w, wName);
- //find out how many unlayouts to do
- int count=0;
- while(w.layoutHistory.size()>0 && ((Integer)w.layoutHistory.peek()).intValue()>=indexOfZoom)
- {
- w.layoutHistory.pop();
- count++;
- }
- if(count>numberOfUnlayouts)
- numberOfUnlayouts=count;
- }
- }
- //do as many unlayouts as needed
- for(int i=0; i<numberOfUnlayouts; i++)
- ACanvas.getCanvas().unlayout();
- }
-
-
- private int findUnzoomIndex(String typeOfZoom, AWindow w)
- {
- int indexOfZoom=0;//if returns 0 then no unzoom is to be performed
- if(ARectangleVPSelection.ZOOM_CALORIMETERS.equals(typeOfZoom))
- {
- if(w.zoomCalo.size()==0)
- indexOfZoom=0;
- else
- {
- indexOfZoom=((Integer) w.zoomCalo.pop()).intValue();
- //check if other zooms done on this window
- while(w.zoomCaloLAr.size()>0 && ((Integer) w.zoomCaloLAr.peek()).intValue()>indexOfZoom)
- {
- w.zoomCaloLAr.pop();
- w.modeHistory.pop();
- }
- }
- }
- else if(typeOfZoom.equals(ARectangleVPSelection.ZOOM_LAR))
- {
- if(w.zoomCaloLAr.size()==0)
- indexOfZoom=0;
- else
- {
- indexOfZoom=((Integer) w.zoomCaloLAr.pop()).intValue();
- while(w.zoomCalo.size()>0 && ((Integer) w.zoomCalo.peek()).intValue()>indexOfZoom)
- {
- w.zoomCalo.pop();
- w.modeHistory.pop();
- }
- }
- }
- if(typeOfZoom.equals(ARectangleYXSelection.ZOOM_SUMMED))
- {
- if(w.zoomSummed.size()==0)
- indexOfZoom=0;
- else
- {
- indexOfZoom=((Integer) w.zoomSummed.pop()).intValue();
- //check if other zooms done on this window
- while(w.zoomLayers.size()>0 && ((Integer) w.zoomLayers.peek()).intValue()>indexOfZoom)
- {
- w.zoomLayers.pop();
- w.modeHistory.pop();
- w.cutHistoryHEC.pop();
- w.cutHistoryLAr.pop();
- }
- }
- }
- else if(typeOfZoom.equals(ARectangleYXSelection.ZOOM_LAYERS))
- {
- if(w.zoomLayers.size()==0)
- indexOfZoom=0;
- else
- {
- indexOfZoom=((Integer) w.zoomLayers.pop()).intValue();
- while(w.zoomSummed.size()>0 && ((Integer) w.zoomSummed.peek()).intValue()>indexOfZoom)
- {
- w.zoomSummed.pop();
- w.modeHistory.pop();
- w.cutHistoryHEC.pop();
- w.cutHistoryLAr.pop();
- }
- }
- }
- return indexOfZoom;
- }
-
-
- private void setParameters(String typeOfZoom, AWindow w, String wName)
- {
- APar parameterStore = APar.instance();
- parameterStore.selectWindowParameters(wName);
- if(ARectangleVPSelection.ZOOM_LAR.equals(typeOfZoom) ||
- ARectangleVPSelection.ZOOM_CALORIMETERS.equals(typeOfZoom))
- {
- parameterStore.get("VP", "Mode").setI( w.modeHistory.pop() );
- }
- else
- {
- parameterStore.get("YX", "Mode").setI( w.modeHistory.pop() );
- parameterStore.get("CutsCalo","HEC").setI( w.cutHistoryHEC.pop() );
- parameterStore.get("CutsCalo","LAr").setI( w.cutHistoryLAr.pop() );
- }
- parameterStore.restoreWindowParameters();
- }
-
-
- public void saveParameters(String typeOfZoom)
- {
- APar parameterStore = APar.instance();
- //save window parameters of current windows
- if(typeOfZoom.equals(ARectangleYXSelection.ZOOM_SUMMED) || typeOfZoom.equals(ARectangleYXSelection.ZOOM_LAYERS))
- {
- parameterStore.selectWindowParameters(this.getName());
- this.modeHistory.push(new Integer(parameterStore.get("YX", "Mode").getI()));
- this.cutHistoryHEC.push(new Integer(parameterStore.get("CutsCalo","HEC").getI()));
- this.cutHistoryLAr.push(new Integer(parameterStore.get("CutsCalo","LAr").getI()));
- parameterStore.restoreWindowParameters();
- }
- else if(ARectangleVPSelection.ZOOM_CALORIMETERS.equals(typeOfZoom) ||
- ARectangleVPSelection.ZOOM_LAR.equals(typeOfZoom))
- {
- parameterStore.selectWindowParameters(this.getName());
- this.modeHistory.push(new Integer(parameterStore.get("VP", "Mode").getI()));
- parameterStore.restoreWindowParameters();
- }
- }
-
-
- public void unzoomFull()
- {
- //perform unzoom to initial state
- setUserCorners(((AProjection2D) getProjection()).calculateNoZoomCorners(getSize()));
- //clear all variables for this window
- cornersHistory.clear();
- zoomSummed.clear();
- zoomLayers.clear();
- zoomCaloLAr.clear();
- zoomCalo.clear();
- layoutHistory.clear();
- modeHistory.clear();
- cutHistoryHEC.clear();
- cutHistoryLAr.clear();
- }
-
-
- public void unzoom()
- {
- if(projection == projectionHistory && cornersHistory.size() > 0)
- {
- setUserCorners((Point2D.Double[]) (cornersHistory.pop()));
- }
- }
-
-
- public void saveLayout()
- {
- if(userCorners != null)
- {
- ACanvas.getCanvas().saveLayout();
- }
- }
-
-
- public void saveCorners()
- {
- if(projection != projectionHistory)
- {
- cornersHistory.clear();
- String wName = this.getName();
- int temp;
- if(wName.equals("1") || wName.equals("2") || wName.equals("3") || wName.equals("4") ||
- wName.equals("5") || wName.equals("6") || wName.equals("7") || wName.equals("8"))
- {
- zoomSummed.clear();
- zoomLayers.clear();
- zoomCaloLAr.clear();
- zoomCalo.clear();
- layoutHistory.clear();
- //will have already done saveParameters so only
- //want the last saved parameters of mode and cuts
- if(modeHistory.size()>0)
- {
- temp = ((Integer) modeHistory.pop()).intValue();
- modeHistory.clear();
- modeHistory.push(new Integer(temp));
- }
-
- if(cutHistoryHEC.size()>0)
- {
- temp = ((Integer) cutHistoryHEC.pop()).intValue();
- cutHistoryHEC.clear();
- cutHistoryHEC.push(new Integer(temp));
- }
-
- if(cutHistoryLAr.size()>0)
- {
- temp = ((Integer) cutHistoryLAr.pop()).intValue();
- cutHistoryLAr.clear();
- cutHistoryLAr.push(new Integer(temp));
- }
- }
- }
- projectionHistory = projection;
- if(userCorners != null)
- {
- cornersHistory.push(clonedCopy(userCorners));
- }
- }
-
-
- public void saveCorners(String typeOfZoom)
- {
- saveCorners();
- //save zoom just done
- if(userCorners != null)
- {
- if(typeOfZoom.equals(ARectangleYXSelection.ZOOM_SUMMED))
- {
- zoomSummed.push(new Integer(cornersHistory.size()));
- }
- else if(typeOfZoom.equals(ARectangleYXSelection.ZOOM_LAYERS))
- {
- zoomLayers.push(new Integer(cornersHistory.size()));
- }
- else if(ARectangleVPSelection.ZOOM_CALORIMETERS.equals(typeOfZoom))
- {
- zoomCalo.push(new Integer(cornersHistory.size()));
- }
- else if(ARectangleVPSelection.ZOOM_LAR.equals(typeOfZoom))
- {
- zoomCaloLAr.push(new Integer(cornersHistory.size()));
- }
- layoutHistory.push(new Integer(cornersHistory.size()));
- }
- }
-
-
- public void setUserCornersNoRepaint(Point2D.Double[] corners)
- {
- Point2D.Double[] validCorners = ((AProjection2D) projection).
- validateCorners(clonedCopy(corners));
- if(validCorners != null)
- {
- this.userCorners = validCorners;
- }
- }
-
-
- public void setUserCorners(double x0, double x1, double y0, double y1)
- {
- Point2D.Double[] corners = new Point2D.Double[3];
- corners[0] = new Point2D.Double(x0, y1);
- corners[1] = new Point2D.Double(x1, y1);
- corners[2] = new Point2D.Double(x1, y0);
- if(projection instanceof AProjection2D) corners = ((AProjection2D)
- projection).validateCorners(corners);
- if(corners != null)
- this.userCorners = corners;
- }
-
-
- public Point2D.Double[] getDefaultCorners()
- {
- return clonedCopy(defaultCorners);
- }
-
-
- public Point2D.Double[] getUserCorners()
- {
- return clonedCopy(userCorners);
- }
-
-
- public void setInteractionManager(AInteractionsManager interactionsManager)
- {
- this.interactionsManager = interactionsManager;
- //Make the interactions Manager aware of canvas changes
- ACanvas.getCanvas().addParentWindowFocusListener(interactionsManager);
- }
-
-
- public void setScaleStatus(boolean statusWanted)
- {
- if(getScaleStatus() != statusWanted) toggleScale();
- }
-
-
- public boolean getScaleStatus()
- {
- return scaleBorder.getScaleStatus();
- }
-
-
- private void toggleScale()
- {
- scaleBorder.toggleScale();
- repaintFromScratch();
- }
-
-
- public AInteractionsManager getInteractionManager()
- {
- return interactionsManager;
- }
-
-
- public void paintComponent(Graphics g) {
- // Don't draw anything for ourself
- }
-
- void paintWindow(Graphics g, boolean doubleBuffer)
- {
- if(!ACanvas.getCanvas().isReallyOnScreen(this))
- return;
- //Why is this checked in paintComponent, and not already in
- //setProjection() ? FIXIT / CLEANUP S.B
- if(projection instanceof AProjectionTrackResidual)
- {
- if (((AProjectionTrackResidual) projection).getResidual() != null)
- userCorners = ((AProjectionTrackResidual)projection).calculateNoZoomCorners();
- else
- {
- AOutput.append("\nTrackResidual Projection is not available, using YX instead in window "
- + this.getName() + ".\n", ALogInterface.WARNING);
- projection = AProjectionsManager.getProjection("YX");
- userCorners = (Point2D.Double[]) corners.get(projection.getName());
- }
- }
-
- //Make sure the offscreen buffer is there if we need one
- Graphics paint = g;
- if (doubleBuffer) {
- createOffScreenBuffer();
- paint = backingGraphics;
- }
-
- // Means either we're using g or backingGraphics was something valid
- if (paint != null)
- {
- if(!bufferValid)
- {
- setLocked(false);
- paintWindowFromScratch(paint);
- LinkedList<AInteraction> interactions = interactionsManager.getInteractions();
- for (int i = 0; i < interactions.size(); i++) {
- if (interactions.get(i) instanceof ASelection) {
- ((ASelection) interactions.get(i)).invalidate();
- }
- }
- bufferValid = true;
-
- }
-
- if (!isLocked() && !borderValid) {
- //m_view.getBorder().paintBorder(paint);
- borderValid = true;
- }
-
- }
-
- // If we painted into a context which wasn't the target graphics context
- // then we need to paint our buffer to the screen
- if (g != paint) {
- imageComponent(g);
- }
-
- LinkedList<AInteraction> interactions = interactionsManager.getInteractions();
- for(int i = 0; i < interactions.size(); i++)
- ((AInteraction) interactions.get(i)).paint((Graphics2D) g);
- }
-
- // I suppose this function is intended to be called before every printing,
- // but it is actually only called for EPS printing!!! FIX / CLEANUP S.B.
- public void printComponent(Graphics g)
- {
- setLocked(false);
- if(!ACanvas.getCanvas().isReallyOnScreen(this))
- return;
- ((AScaleBorder) getView().getBorder()).forceDraw();
- //Double border painting needed here for EPS - probably something wrong in
- //projection drawing -> graphics context left unclean? FIXIT. S.B.
- ((AScaleBorder) getView().getBorder()).printBorder(this,g,this.getX(),this.getY(),this.getWidth(),this.getHeight());
- paintWindowFromScratch(g);
- ((AScaleBorder) getView().getBorder()).printBorder(this,g,this.getX(),this.getY(),this.getWidth(),this.getHeight());
- borderValid = true;
- LinkedList<AInteraction> interactions = interactionsManager.getInteractions();
- for(int i = 0; i < interactions.size(); i++)
- {
- AInteraction inter = (AInteraction) interactions.get(i);
- if(inter.isPrintable())
- inter.paint((Graphics2D) g);
- }
- }
-
-
- public void printBorder(Graphics g){}
-
-
- // must call paint border myself since the border is backed too
- public void paintBorder(Graphics g)
- {}
-
-
- public void repaintFromScratch()
- {
- if(locked)return;
- bufferValid = false;
- borderValid = false;
-
- // Check whether to draw scales on repaint
- scaleBorder.hideScale();
-
- // For some reason need to repaint the view too when using heavyweight
- // component inside... - Adam
- repaint();
- m_view.repaint();
-
- }
-
-
- // Attention: for efficiency this routine overwrites and returns its input
- public ACoord calculateUser(ACoord user)
- {
- double[] h;
- double[] v;
- double hTemp;
- double vTemp;
- if(validTransform())
- {
- for(int j = 0; j < user.hv[0].length; ++j)
- {
- h = user.hv[0][j];
- v = user.hv[1][j];
- for(int i = 0; i < h.length; ++i)
- {
- hTemp = h[i];
- vTemp = v[i];
- h[i] = m00 * hTemp + m01 * vTemp + m02;
- v[i] = m10 * hTemp + m11 * vTemp + m12;
- }
- }
- }
- else
- {
- for(int j = 0; j < user.hv[0].length; ++j)
- {
- h = user.hv[0][j];
- v = user.hv[1][j];
- for(int i = 0; i < h.length; ++i)
- {
- h[i] = 0.;
- v[i] = 0.;
- }
- }
- }
- return user;
- }
-
-
- public Point2D.Double calculateUser(double x, double y)
- {
- double[][][] hv = new double[2][1][1];
- hv[0][0][0] = x;
- hv[1][0][0] = y;
- ACoord p = calculateUser(new ACoord(hv));
- return new Point2D.Double(p.hv[0][0][0], p.hv[1][0][0]);
- }
-
-
- public Point2D.Double calculateUser(Point2D.Double p)
- {
- return calculateUser(p.x, p.y);
- }
-
-
- public Point2D.Double calculateUser(Point p)
- {
- return calculateUser(p.x, p.y);
- }
-
-
- // Attention! For efficiency this routine overwrites and returns its input
- public ACoord calculateDisplay(ACoord user)
- {
- if(user == null)
- return null;
- double[] h;
- double[] v;
- double hTemp;
- double vTemp;
- if(validTransform())
- {
- for(int j = 0; j < user.hv[0].length; ++j)
- {
- h = user.hv[0][j];
- v = user.hv[1][j];
- for(int i = 0; i < h.length; ++i)
- {
- hTemp = h[i];
- vTemp = v[i];
- h[i] = n00 * hTemp + n01 * vTemp + n02;
- v[i] = n10 * hTemp + n11 * vTemp + n12;
- }
- }
- }
- else
- {
- for(int j = 0; j < user.hv[0].length; ++j)
- {
- h = user.hv[0][j];
- v = user.hv[1][j];
- for(int i = 0; i < h.length; ++i)
- {
- h[i] = 0.;
- v[i] = 0.;
- }
- }
- }
- return user;
- }
-
-
- public Point2D.Double calculateDisplay(double x, double y)
- {
- double[][][] hv = new double[2][1][1];
- hv[0][0][0] = x;
- hv[1][0][0] = y;
- ACoord p = calculateDisplay(new ACoord(hv));
- return new Point2D.Double(p.hv[0][0][0], p.hv[1][0][0]);
- }
-
-
- public Point2D.Double calculateDisplay(Point2D.Double p)
- {
- return calculateDisplay(p.x, p.y);
- }
-
- /**
- * Called when the window is selected
- */
- void select()
- {
- scaleBorder.setSelected();
- //redraw border to indicate this window is selected
- borderValid = false;
- repaint();
- }
-
- /**
- * Called when the window is deselected
- */
- void deselect()
- {
- scaleBorder.setDeselected();
- //redraw border to indicate this window is deselected
- borderValid = false;
- repaint();
- }
-
- /**
- * Draws the image from the backup buffer on screen
- */
- private void imageComponent(Graphics g)
- {
- Graphics2D g2d = (Graphics2D) g;
- if(g2d != null)
- {
- Rectangle clipRect = g2d.getClipBounds();
- // Repaint only what is necessary. Except when running on MacOSX Tiger.
- // (see http://lists.apple.com/archives/Java-dev/2005/Jun/msg00611.html)
- if(clipRect != null && !(System.getProperty("os.name").equals("Mac OS X")
- && System.getProperty("os.version").startsWith("10.4.")))
- {
- int x = clipRect.x;
- int y = clipRect.y;
- int w = clipRect.width;
- int h = clipRect.height;
- BufferedImage subImage = backingImage.getSubimage(x, y, w, h);
- g2d.drawImage(subImage, x, y, this);
- }
- else
- {
- g2d.drawImage(backingImage, 0, 0, this);
- }
- }
- }
-
-
- public Rectangle getCurrDisp()
- {
- int width = m_view.getWidth();
- int height = m_view.getHeight();
- insets = m_view.getInsets(insets);
- int x = insets.left;
- int y = insets.top;
- int w = width - insets.left - insets.right;
- int h = height - insets.top - insets.bottom;
- return new Rectangle(x, y, w, h);
- }
-
-
- public void paintWindowFromScratch(Graphics g)
- {
- APar parameterStore = APar.instance();
- ACanvas.getCanvas().setPaintingWindow(this);
- parameterStore.selectWindowParameters(getName());
- Rectangle currDisp = getCurrDisp();
- int x = (int) Math.rint(currDisp.getX());
- int y = (int) Math.rint(currDisp.getY());
- int width = (int) Math.rint(currDisp.getWidth());
- int height = (int) Math.rint(currDisp.getHeight());
- g.setClip(x, y, width, height);
- Graphics2D g2 = (Graphics2D)g;
- if(APreferencesControl.getAliasMenuItem())
- g2.setRenderingHint(RenderingHints.KEY_ANTIALIASING, RenderingHints.VALUE_ANTIALIAS_ON);
- else
- g2.setRenderingHint(RenderingHints.KEY_ANTIALIASING, RenderingHints.VALUE_ANTIALIAS_OFF);
-
- projection.paint(this, g);
-
- g.setClip(0, 0, m_view.getWidth(), m_view.getHeight());
- parameterStore.restoreWindowParameters();
- ACanvas.getCanvas().setPaintingWindow(null);
-
- if(AColorHelpDialog.getInstance() != null && AColorHelpDialog.getInstance().isVisible())
- AColorHelpDialog.getInstance().update();
- }
-
-
- private void createOffScreenBuffer()
- {
- int w = m_view.getWidth();
- int h = m_view.getHeight();
- Dimension dim = new Dimension(w, h);
- // Check that the current size is positive.
- if(w > 0 && h > 0)
- {
- if(!backingDimension.equals(dim))
- {
- // Usinig ABufferedPixelGraphics is not a good idea in MacOSX Tiger.
- // So instead we use createGraphics() to create a normal Graphics2D
- // object to draw on.
- if(System.getProperty("os.name").equals("Mac OS X")
- && System.getProperty("os.version").startsWith("10.4."))
- {
- backingImage = getGraphicsConfiguration().createCompatibleImage(w, h);
- } else if(GraphicsEnvironment.getLocalGraphicsEnvironment().
- getDefaultScreenDevice().getDefaultConfiguration().
- getColorModel().getTransferType()
- == DataBuffer.TYPE_USHORT)
- {
- backingImage = new BufferedImage(w, h,
- BufferedImage.TYPE_USHORT_565_RGB);
- }
- else
- {
- if(System.getProperty("os.name").equals("Mac OS X"))
- backingImage = new BufferedImage(w, h,
- BufferedImage.TYPE_INT_ARGB_PRE);
- else
- backingImage = new BufferedImage(w, h,
- BufferedImage.TYPE_INT_RGB);
- }
- backingGraphics = backingImage.createGraphics();
- backingDimension.setSize(dim);
- bufferValid = false;
- borderValid = false;
- }
- }
- else
- {
- backingImage = null;
- backingGraphics = null;
- }
- }
-
-
- public Point2D.Double[] getDisplayCorners()
- {
- Point2D.Double[] corners = new Point2D.Double[3];
- insets = m_view.getInsets(insets);
- int x = insets.left;
- int y = insets.top;
- int w = m_view.getWidth() - insets.left - insets.right;
- int h = m_view.getHeight() - insets.top - insets.bottom;
- Point2D.Double upperLeft = new Point2D.Double(x, y);
- Point2D.Double lowerRight = new Point2D.Double(x + w, y + h);
- Point2D.Double upperRight = new Point2D.Double(x + w, y);
- corners[0] = upperLeft;
- corners[1] = upperRight;
- corners[2] = lowerRight;
- return corners;
- }
-
-
- private boolean validTransform()
- {
- double x1, y1, x2, y2, x3, y3, u1, v1, u2, v2, u3, v3;
- x1 = userCorners[0].x;
- y1 = userCorners[0].y;
- x2 = userCorners[1].x;
- y2 = userCorners[1].y;
- x3 = userCorners[2].x;
- y3 = userCorners[2].y;
- Point2D.Double[] displayCorners = getDisplayCorners();
- u1 = displayCorners[0].x;
- v1 = displayCorners[0].y;
- u2 = displayCorners[1].x;
- v2 = displayCorners[1].y;
- u3 = displayCorners[2].x;
- v3 = displayCorners[2].y;
- if(v1 * (u3 - u2) + v2 * (u1 - u3) + v3 * (u2 - u1) == 0.)return false;
- if((u1 - u2) == 0.)return false;
- m01 = (u1 * (x2 - x3) + u2 * (x3 - x1) + u3 * (x1 - x2)) /
- (v1 * (u3 - u2) + v2 * (u1 - u3) + v3 * (u2 - u1));
- m00 = ((x1 - x2) - m01 * (v1 - v2)) / (u1 - u2);
- m02 = x1 - m00 * u1 - m01 * v1;
- m11 = (u1 * (y2 - y3) + u2 * (y3 - y1) + u3 * (y1 - y2)) /
- (v1 * (u3 - u2) + v2 * (u1 - u3) + v3 * (u2 - u1));
- m10 = ((y1 - y2) - m11 * (v1 - v2)) / (u1 - u2);
- m12 = y1 - m10 * u1 - m11 * v1;
- if((x1 - x2) == 0.)
- {
- n01 = (u2 - u1) / (y2 - y1);
- n11 = (v2 - v1) / (y2 - y1);
- n00 = ((u3 - u2) - n01 * (y3 - y2)) / (x3 - x1);
- n10 = ((v3 - v2) - n11 * (y3 - y2)) / (x3 - x1);
- n02 = u1 - n00 * x1 - n01 * y1;
- n12 = v1 - n10 * x1 - n11 * y1;
- return true;
- }
- else
- {
- if(y1 * (x3 - x2) + y2 * (x1 - x3) + y3 * (x2 - x1) == 0.)return false;
- n01 = (x1 * (u2 - u3) + x2 * (u3 - u1) + x3 * (u1 - u2)) /
- (y1 * (x3 - x2) + y2 * (x1 - x3) + y3 * (x2 - x1));
- n00 = ((u1 - u2) - n01 * (y1 - y2)) / (x1 - x2);
- n02 = u1 - n00 * x1 - n01 * y1;
- n11 = (x1 * (v2 - v3) + x2 * (v3 - v1) + x3 * (v1 - v2)) /
- (y1 * (x3 - x2) + y2 * (x1 - x3) + y3 * (x2 - x1));
- n10 = ((v1 - v2) - n11 * (y1 - y2)) / (x1 - x2);
- n12 = v1 - n10 * x1 - n11 * y1;
- return true;
- }
- }
-
-
- public JToolTip createToolTip()
- {
- JToolTip tip = new JToolTip();
- tip.setFont(new Font(null, Font.PLAIN, 20));
- return tip;
- }
-
-
- // implementation of DropTargetListener
-
- // Called when a drag operation has encountered the DropTarget.
- public void dragEnter(DropTargetDragEvent dtde)
- {
- dtde.acceptDrag(DnDConstants.ACTION_MOVE);
- }
-
-
- // The drag operation has departed the DropTarget without dropping.
- public void dragExit(DropTargetEvent dte)
- {}
-
-
- // Called when a drag operation is ongoing on the DropTarget.
- public void dragOver(DropTargetDragEvent dtde)
- {}
-
-
- // The drag operation has terminated with a drop on this DropTarget.
- public void drop(DropTargetDropEvent dtde)
- {
- try
- {
- Transferable transferable = dtde.getTransferable();
- DataFlavor javaObjectDataFlavor = new DataFlavor(DataFlavor.
- javaJVMLocalObjectMimeType);
- if(transferable.isDataFlavorSupported(javaObjectDataFlavor))
- {
- dtde.acceptDrop(DnDConstants.ACTION_MOVE);
- Object object = transferable.getTransferData(
- javaObjectDataFlavor);
- if(object instanceof ACallBack)
- ((ACallBack) object).callBack(this);
- else
- ACanvas.getCanvas().copyWindowSettings(((ADnDLabel) object).getText(),
- getName());
- dtde.getDropTargetContext().dropComplete(true);
- }
- else
- AOutput.append("Cannot accept drop\n", ALogInterface.BAD_COMMAND);
- }
- catch(Exception e)
- {
- e.printStackTrace();
- dtde.rejectDrop();
- }
- }
-
-
- // Called if the user has modified the current drop gesture.
- public void dropActionChanged(DropTargetDragEvent dtde)
- {}
-
-
- private Vector<ChangeListener> projectionChangeListeners = new Vector<ChangeListener>();
- public void addProjectionChangeListener(ChangeListener listener)
- {
- projectionChangeListeners.addElement(listener);
- listener.stateChanged(new ChangeEvent(this));
- }
-
-
- private void fireProjectionChange()
- {
- ChangeEvent changeEvent = new ChangeEvent(this);
- for(int i = 0; i < projectionChangeListeners.size(); i++)
- {
- ChangeListener changeListener = (ChangeListener)
- projectionChangeListeners.elementAt(
- i);
- changeListener.stateChanged(changeEvent);
- }
- }
-
-
- private Vector<ChangeListener> groupChangeListeners = new Vector<ChangeListener>();
- public void addGroupChangeListener(ChangeListener listener)
- {
- groupChangeListeners.addElement(listener);
- listener.stateChanged(new ChangeEvent(this));
- }
-
-
- private void fireGroupChange()
- {
- ChangeEvent changeEvent = new ChangeEvent(this);
- for(int i = 0; i < groupChangeListeners.size(); i++)
- {
- ChangeListener changeListener = (ChangeListener)
- groupChangeListeners.elementAt(i);
- changeListener.stateChanged(changeEvent);
- }
- }
-
-
- // implementation of DragSourceListener
-
- // This method is invoked to signify that the Drag and Drop operation is complete.
- public void dragDropEnd(DragSourceDropEvent dsde)
- {}
-
-
- // Called as the hotspot enters a platform dependent drop site.
- public void dragEnter(DragSourceDragEvent dsde)
- {
- dsde.getDragSourceContext().setCursor(ADnDLabel.DROP_INVALID);
- }
-
-
- // Called as the hotspot exits a platform dependent drop site.
- public void dragExit(DragSourceEvent dse)
- {
- dse.getDragSourceContext().setCursor(ADnDLabel.DROP_INVALID);
- }
-
-
- // Called as the hotspot moves over a platform dependent drop site.
- public void dragOver(DragSourceDragEvent dsde)
- {
- dsde.getDragSourceContext().setCursor(ADnDLabel.DROP_VALID);
- }
-
-
- // Called when the user has modified the drop gesture.
- public void dropActionChanged(DragSourceDragEvent dsde)
- {}
-
-
- // implementation of DragGestureListener
-
- public void dragGestureRecognized(DragGestureEvent dge)
- {
- if(!canCopyScales)return;
- Point p = dge.getDragOrigin();
- Insets i = m_view.getInsets();
- int w = m_view.getWidth();
- int h = m_view.getHeight();
- Rectangle vScale = new Rectangle(0, 0, i.left, h - i.bottom);
- Rectangle hScale = new Rectangle(i.left, h - i.bottom, w - i.left,
- i.bottom);
- if(vScale.contains(p))
- dragAction = dragActionType.COPY_VERTICAL_SCALE;
- else if(hScale.contains(p))
- dragAction = dragActionType.COPY_HORIZONTAL_SCALE;
- else
- return;
- dragSource.startDrag(dge, ADnDLabel.DROP_INVALID,
- new AObjectTransferable(this), this);
- }
-
-
- public void setScaleCopyStatus(boolean canCopyScales)
- {
- this.canCopyScales = canCopyScales;
- }
-
-
- public void callBack(Object to)
- {
- AWindow targetWindow;
- if(to instanceof ADnDLabel)
- targetWindow = ACanvas.getCanvas().getWindow(((ADnDLabel) to).
- getText());
- else if(to instanceof AWindow)
- targetWindow = (AWindow) to;
- else
- return;
- if(dragAction == dragActionType.COPY_VERTICAL_SCALE)
- {
- String labelSource = ((AScaleBorder) getBorder()).
- getVerticalAxisLabel();
- String labelTarget = ((AScaleBorder) (targetWindow.getBorder())).
- getVerticalAxisLabel();
- if(labelSource.equals(labelTarget) && labelSource.equals(AMath.PHI))
- {
- Point2D.Double[] sourceCorners = getUserCorners();
- Point2D.Double[] targetCorners = targetWindow.getUserCorners();
- for(int i = 0; i < sourceCorners.length; ++i)
- targetCorners[i].setLocation(targetCorners[i].getX(),
- sourceCorners[i].getY());
- targetWindow.setUserCorners(targetCorners);
- AOutput.append("Copy " + AMath.PHI + " Scale from " + getName() +
- " to " + targetWindow.getName() + "\n",
- ALogInterface.NORMAL);
- }
- }
- else if(dragAction == dragActionType.COPY_HORIZONTAL_SCALE)
- {
- String labelSource = ((AScaleBorder) getBorder()).
- getHorizontalAxisLabel();
- String labelTarget = ((AScaleBorder) targetWindow.getBorder()).
- getHorizontalAxisLabel();
- if(labelSource.equals(labelTarget) && labelSource.equals("Z"))
- {
- Point2D.Double[] sourceCorners = getUserCorners();
- Point2D.Double[] targetCorners = targetWindow.getUserCorners();
- for(int i = 0; i < sourceCorners.length; ++i)
- targetCorners[i].setLocation(sourceCorners[i].getX(),
- targetCorners[i].getY());
- targetWindow.setUserCorners(targetCorners);
- AOutput.append("Copy Z Scale from " + getName() + " to " +
- targetWindow.getName() + "\n",
- ALogInterface.NORMAL);
- }
- }
- }
-
-
- private void setLocked(boolean locked)
- {
- if(locked == this.locked)return;
- boolean wasLocked = this.locked;
- this.locked = locked;
- ACanvas.getCanvas().fireLockChange();
- if(wasLocked && !locked)
- this.repaintFromScratch();
- ACanvas.getCanvas().fireLockChange();
- }
-
-
- public boolean isLocked()
- {
- return locked;
- }
-
- public JComponent getView() {
- return m_view;
- }
-
- public void invalidateQuietly() {
- // When you get told to paint in OpenGL you better paint otherwise
- // you're going to get your empty backbuffer painted to screen a lot
- // of the time ... could fix this by managing our buffer swaps by hand
- // see AWindowGLView.display() for more... - Adam
- bufferValid = false;
- borderValid = false;
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/canvas/AWindowGLView.java b/graphics/AtlantisJava/src/atlantis/canvas/AWindowGLView.java
deleted file mode 100644
index bd94b901375..00000000000
--- a/graphics/AtlantisJava/src/atlantis/canvas/AWindowGLView.java
+++ /dev/null
@@ -1,337 +0,0 @@
-package atlantis.canvas;
-
-import atlantis.interactions.AInteractionsManager;
-import atlantis.utils.ALogger;
-import java.awt.BorderLayout;
-import java.awt.BufferCapabilities;
-import java.awt.Canvas;
-import java.awt.Component;
-import java.awt.Graphics;
-import java.awt.GraphicsEnvironment;
-import java.awt.event.MouseListener;
-import java.lang.ref.WeakReference;
-import java.lang.ref.WeakReference;
-import java.util.ArrayList;
-import javax.media.opengl.AWTGraphicsDevice;
-import javax.media.opengl.DefaultGLCapabilitiesChooser;
-import javax.media.opengl.GL;
-import javax.media.opengl.GLAutoDrawable;
-import javax.media.opengl.GLCanvas;
-import javax.media.opengl.GLCapabilities;
-import javax.media.opengl.GLCapabilitiesChooser;
-import javax.media.opengl.GLContext;
-import javax.media.opengl.GLDrawableFactory;
-import javax.media.opengl.GLEventListener;
-import javax.media.opengl.GLJPanel;
-import javax.media.opengl.glu.GLU;
-import javax.swing.JPanel;
-import javax.swing.border.Border;
-
-/**
- * This class provides an OpenGL context. When the parent AWindow repaints
- * this is propagated down to this view component, which then calls back to
- * the parent AWindow requesting everything be copied in.
- *
- * @author Adam Davison
- */
-public class AWindowGLView extends JPanel implements GLEventListener {
-
- private static ALogger logger = ALogger.getLogger(AWindowGLView.class);
-
- private GLCanvas m_panel;
- //private JPanel m_children;
- private long m_start = 0;
- private int m_count = 0;
- private AWindow m_parent;
- private Graphics m_g = null;
-
- private static GLContext m_ocontext;
-
- // Keep track of all initialized OpenGL contexts without forcing them
- // to stay in memory when we aren't using them any more...
- // This is a debugging thing
- private static ArrayList<WeakReference> m_all = new ArrayList<WeakReference>();
-
- private static int m_maxFSAA = -1;
- private static int m_FSAA = 0;
-
- public static int getCurrentFSAA() {
- return m_FSAA;
- }
-
- public static void setCurrentFSAA(int FSAA) {
- logger.info("Changing anti-aliasing to " + FSAA + "x");
- m_FSAA = FSAA;
- for (int i = 0; i < m_all.size(); i++) {
- AWindowGLView v = (AWindowGLView)(m_all.get(i).get());
- if (v != null) {
- v.restartDisplay();
- }
- }
- }
-
- public static int getMaxFSAA() {
- return m_maxFSAA;
- }
-
- public void restartDisplay() {
- System.out.println("RESTART DISPLAY!");
- remove(m_panel);
- m_panel = null;
- startDisplay();
- validate();
- m_panel.setBounds(0, 0, getWidth(), getHeight());
- }
-
- private void startDisplay() {
- GLCapabilities cap = new GLCapabilities();
-
- if (m_FSAA > 0) {
- cap.setSampleBuffers(true);
- cap.setNumSamples(m_FSAA);
- logger.info("Requesting " + m_FSAA + "x");
- }
-
- cap.setDoubleBuffered(true);
-
- if (m_ocontext != null) {
- m_panel = new GLCanvas(cap, null, m_ocontext, null);
- } else {
- m_panel = new GLCanvas(cap);
- }
-
- m_ocontext = m_panel.getContext();
-
- m_panel.addGLEventListener(this);
-
- //m_FSAA = m_panel.getChosenGLCapabilities().getNumSamples();
-
- //m_children = new JPanel();
-
- add(m_panel, BorderLayout.CENTER);
-
- }
-
- public AWindowGLView(AWindow parent) {
- m_parent = parent;
- setLayout(null);
-
- startDisplay();
- //m_panel.add(m_but);
- //add(m_but, BorderLayout.NORTH);
-
-
- m_all.add(new WeakReference(this));
-
- }
-
- private void checkListeners() {
- AInteractionsManager lt = m_parent.getInteractionManager();
- MouseListener[] lr = m_panel.getMouseListeners();
- boolean found = false;
- for (int i = 0; i < lr.length; i++) {
- if (lr[i] == lt) {
- found = true;
- }
- }
-
- if (!found) {
- m_panel.addMouseListener(lt);
- m_panel.addMouseMotionListener(lt);
- }
- }
-
- public void init(GLAutoDrawable drawable) {
-
- System.out.println("INIT CALLED!");
- System.out.println(getWidth() + ":" + getHeight());
- //(new Exception()).printStackTrace();
-
- checkListeners();
-
- //drawable.setGL(new TraceGL(drawable.getGL(), System.err));
- GL gl = drawable.getGL();
- logger.debug("INIT GL IS: " + gl.getClass().getName());
-
- int[] buffer = new int[2];
- gl.glGetIntegerv(GL.GL_MAX_SAMPLES_EXT, buffer, 0);
- m_maxFSAA = buffer[0];
- logger.debug("Graphics card supports max anti-alias of: " + buffer[0] + "x");
-
- BufferCapabilities bc = m_panel.getGraphicsConfiguration().getBufferCapabilities();
- boolean frontacc = bc.getFrontBufferCapabilities().isAccelerated();
- boolean backacc = bc.getBackBufferCapabilities().isAccelerated();
- logger.info("OpenGL Acceleration Status: Front - " + frontacc + " and Back - " + backacc);
-
- // All polygons in Atlantis are uniformly coloured, this speeds things up in theory at least...
- gl.glClearColor(0.0f, 0.0f, 0.0f, 0.0f);
- gl.glShadeModel(GL.GL_FLAT);
-
- // Old style antialiasing like this is apparently not supported by
- // modern graphics cards although we may want to enable it on older
- // hardware where people do not have FSAA but still want AA
- /*gl.glHint(gl.GL_POLYGON_SMOOTH_HINT, gl.GL_NICEST);
- gl.glEnable(gl.GL_POLYGON_SMOOTH);
- gl.glHint(gl.GL_LINE_SMOOTH_HINT, gl.GL_NICEST);
- gl.glEnable(gl.GL_LINE_SMOOTH);*/
-
- // We do our own Z-ordering
- gl.glDisable(gl.GL_DEPTH_TEST);
-
- // Enable transparency, even if nothing in Atlantis is actually
- // transparent yet...
- gl.glEnable(gl.GL_BLEND);
- gl.glBlendFunc(gl.GL_SRC_ALPHA, gl.GL_ONE_MINUS_SRC_ALPHA);
-
- }
-
- private static int countContexts() {
- int count = 0;
- for (int i = 0; i < m_all.size(); i++) {
- if (m_all.get(i).get() != null) {
- count++;
- }
- // Could throw away dead weak refs here...
- }
- return count;
- }
-
- public void display(GLAutoDrawable d) {
-
- /*if (m_parent.isValid()) {
- System.out.println("VALID PARENT - RETURNING");
- return;
- }*/
- // Perhaps we could not do this and turn off buffer swaps?
- // Currently we're probably doing some unnecessary repaints when
- // you change window
- m_parent.invalidateQuietly();
-
- GL gl = d.getGL();
- //System.out.println("DISPLAY " + this);
- //System.out.println("ACTIVE: " + countContexts());
- gl.glMatrixMode(GL.GL_MODELVIEW);
- gl.glLoadIdentity();
-
- // Can we avoid this? We probably fill with bg colour later anyway...
- gl.glColor4f(1.0f, 1.0f, 1.0f, 0.5f);
- gl.glClear(gl.GL_COLOR_BUFFER_BIT);
-
- if (m_parent != null) {
- AGLGraphics glg = new AGLGraphics(d);
- m_parent.paintWindow(glg, false);
- super.paintBorder(glg);
- /*for (int i = 0; i < m_panel.getComponentCount(); i++) {
- m_panel.getComponent(i).paint(glg);
- }*/
- }
-
- gl.glFlush();
-
- m_count++;
- long tnow = System.currentTimeMillis();
- if (tnow - 1000 > m_start) {
- logger.info("OpenGL FPS: " + m_count);
- m_count = 0;
- m_start = tnow;
- }
- }
-
- /*@Override
- public Graphics getGraphics() {
- if (m_g == null) {
- System.out.println("PAINT OUT OF VALID");
- return new ADummyGraphics2D();
- } else {
- return m_g;
- }
- }*/
- public void reshape(GLAutoDrawable drawable, int x, int y, int width, int height) {
- //System.out.println("GLRESIZE: " + x + ":" + y + ":" + width + ":" + height);
- GL gl = drawable.getGL();
- GLU glu = new GLU();
-
- if (height <= 0) // avoid a divide by zero error!
- {
- height = 1;
- }
- final float h = (float) width / (float) height;
- gl.glViewport(0, 0, width, height);
- gl.glMatrixMode(GL.GL_PROJECTION);
- gl.glLoadIdentity();
- gl.glOrtho(x, x + width, y + height, y, -100.0, 100.0);
- //gl.glOrtho(-10.0, 10.0, -10.0, 10.0, -10.0, 10.0);
-
- gl.glMatrixMode(GL.GL_MODELVIEW);
- gl.glLoadIdentity();
-
- m_count = 0;
- m_start = System.currentTimeMillis();
- }
-
- // Should implement this for multi-screen people some time...
- public void displayChanged(GLAutoDrawable arg0, boolean arg1, boolean arg2) {
- //throw new UnsupportedOperationException("Not supported yet.");
- }
-
- public void setBounds(int x, int y, int width, int height) {
- //Border b = getBorder();
- //setBorder(null);
- super.setBounds(x, y, width, height);
- m_panel.setBounds(0, 0, getWidth(), getHeight());
- //setBorder(b);
- //System.out.println("RESIZE " + x + ":" + y + ":" + width + ":" + height);
- }
-
- // Need to paint our own border to make sure it gets drawn in GL
- public void paintBorder(Graphics g) {
-
- }
-
- // Need to make sure our heavyweight child is invalidated
- public void repaint() {
- super.repaint();
- if (m_panel != null) {
- m_panel.repaint();
- }
- }
-
- public Component getRealPanel() {
- return m_panel;
- }
-}
-
-class OurGLCapChooser implements GLCapabilitiesChooser {
-
- private int m_maxAA;
- private boolean m_canAA;
-
- public OurGLCapChooser() {
- }
-
- public int chooseCapabilities(GLCapabilities req, GLCapabilities[] all, int recommended) {
- System.out.println("CALLED!");
- m_canAA = false;
- m_maxAA = 0;
-
- for (int i = 0; i < all.length; i++) {
- System.out.println(all[i]);
- if (all[i].getSampleBuffers()) {
- m_canAA = true;
- if (all[i].getNumSamples() > m_maxAA) {
- m_maxAA = all[i].getNumSamples();
- }
- }
- }
-
- return (new DefaultGLCapabilitiesChooser()).chooseCapabilities(req, all, recommended);
- }
-
- public boolean getCanAA() {
- return m_canAA;
- }
-
- public int getMaxAA() {
- return m_maxAA;
- }
-}
\ No newline at end of file
diff --git a/graphics/AtlantisJava/src/atlantis/canvas/AWindowSwingView.java b/graphics/AtlantisJava/src/atlantis/canvas/AWindowSwingView.java
deleted file mode 100644
index cc27fad13af..00000000000
--- a/graphics/AtlantisJava/src/atlantis/canvas/AWindowSwingView.java
+++ /dev/null
@@ -1,57 +0,0 @@
-package atlantis.canvas;
-
-import atlantis.globals.AGlobals;
-
-import java.awt.Graphics;
-import javax.swing.JPanel;
-
-/**
- *
- * This class provides an Java2D/Swing context. When the parent AWindow repaints
- * this is propagated down to this view component, which then calls back to
- * the parent AWindow requesting everything be copied in.
- *
- * @author Adam Davison
- */
-public class AWindowSwingView extends JPanel {
-
- private AWindow m_parent;
-
- public AWindowSwingView(AWindow parent) {
- setLayout(null);
- m_parent = parent;
- }
-
- @Override
- protected void paintComponent(Graphics g) {
- //System.out.println(getX() + ":" + getY() + ":" + getWidth() + ":" + getHeight());
- g.setClip(0, 0, getWidth(), getHeight());
- //g.setColor(Color.RED);
- //g.fillRect(10, 10, getWidth() - 10, getHeight() - 10);
- if (AGlobals.isAtlantisHeadless()) {
- // Don't need to paint to a backing buffer ever in headless
- // since we're already painting offscreen
- m_parent.paintWindow(g, false);
- } else {
- m_parent.paintWindow(g, true);
- }
- }
-
- @Override
- protected void printComponent(Graphics g) {
- //System.out.println(getX() + ":" + getY() + ":" + getWidth() + ":" + getHeight());
- g.setClip(0, 0, getWidth(), getHeight());
- //g.setColor(Color.RED);
- //g.fillRect(10, 10, getWidth() - 10, getHeight() - 10);
- m_parent.printComponent(g);
- }
-
- @Override
- public void setBounds(int x, int y, int width, int height) {
- super.setBounds(x, y, width, height);
- //System.out.println("RESIZE " + x + ":" + y + ":" + width + ":" + height);
- }
-
-
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/canvas/package.html b/graphics/AtlantisJava/src/atlantis/canvas/package.html
deleted file mode 100644
index c09fd6d63f2..00000000000
--- a/graphics/AtlantisJava/src/atlantis/canvas/package.html
+++ /dev/null
@@ -1,23 +0,0 @@
-<html>
-<head></head>
-<body>
-<p>Provides classes representing the Atlantis canvas and the windows
- displayed within it.</p>
-<p>The ACanvas is a JFrame containing a JlayeredPane of AWindows. Windows
-are placed into the JLayeredPane depending on the current layout. The
-canvas class contains a HashTable of all possible windows and a
-HashTable of all available layouts. Windows needed by the current
-layout are added to the JLayeredPane according to the size and the
-order defined by the layout. An AWindow is a JPanel into which the
-Atlantis graphics are drawn. Each window has an associated projection
-and also an interaction manager. The interaction manager is a mouse
-listener which deals with all mouse events on the window. The window
-manages the drawing of the Atlantis picture and deals with the linear
-transformations from user to display co-ordinates. Non-linear
-transformations are dealt with by the projection. ALayout defines the
-size and position (in the 3x3 grid layout scheme of the layered pane)
-of each window, and also describes combinations of these windows
-called pages. pages is an array of characters where each character
-represents a window.</p>
-</body>
-</html>
diff --git a/graphics/AtlantisJava/src/atlantis/config/AConfig.java b/graphics/AtlantisJava/src/atlantis/config/AConfig.java
deleted file mode 100755
index f35dbb07ed5..00000000000
--- a/graphics/AtlantisJava/src/atlantis/config/AConfig.java
+++ /dev/null
@@ -1,432 +0,0 @@
-package atlantis.config;
-
-import java.io.BufferedInputStream;
-import java.io.BufferedReader;
-import java.io.FileNotFoundException;
-import java.io.FileReader;
-import java.io.IOException;
-import java.io.InputStream;
-import java.io.InputStreamReader;
-import java.util.ArrayList;
-import java.util.Hashtable;
-import java.util.Iterator;
-
-import javax.xml.parsers.DocumentBuilder;
-import javax.xml.parsers.DocumentBuilderFactory;
-
-import org.w3c.dom.Document;
-import org.w3c.dom.Element;
-
-import atlantis.Atlantis;
-import atlantis.utils.xml.AXMLErrorHandler;
-import atlantis.utils.ALogger;
-import atlantis.utils.AUtilities;
-
-/**
- * AConfig acts as a container of the configuration file.
- * The whole file can be accessed through a tree structure.
- *
- * @author ql
- *
- */
-
-// by Zdenek, remark, 2008-08-14
-// since the attributes are stored in something like HashMap
-// their order is not ensured?, e.g. having in WindowCorners source
-// configuration (master copy according to which synchronization is done)
-// <CORNERS windowName="W" x0="-1320.0" y0="1320.0" x1="1320.0" y1="1320.0" x2="1320.0" y2="-1320.0"/>
-// line order this way, after updating it result in something like this
-// <CORNERS x2="1320.0" windowName="W" y0="1320.0" x1="1320.0" y2="-1320.0" y1="1320.0" x0="-1320.0"/>
-// the same data, but the order of attributes is not the same
-public class AConfig
-{
- private static ALogger logger = ALogger.getLogger(AConfig.class);
-
- // A map defining the key attribute for each modifiable element
- static Hashtable keyMap;
-
- // Define modifiable attributes
- public static String[] CANVAS_ATT = {"startupLayout", "aspectRatio"}; //<Canvas>
- public static String[] WINDOW_ATT = {"projection", "group"}; //<UsedWindow>
- public static String[] LAYOUT_ATT = {"startup", "startupWindow"}; //<Layout>
- public static String[] PAR_ATT = {"va", "st", "dop", "scope", "ul"}; //<Others>
- public static String[] GROUP_ATT = {"userLevel"}; //<Group>
-
- // Define used greek letters in configuration file
- static String[] GREEK_LETTER = {"\u03B7", "\u03C1", "\u03A6", "\u0394", "\u03BB", "\u03C3"};
- static String[] GREEK_ENTITY = {"η", "ρ", "φ", "δ", "λ", "σ"};
-
- // The name of the configuration file
- private String filename;
-
- // If isCustomised is true, the configuration file contains two exclusive
- // blocks, <ParameterDifferences> and <WindowCorners>.
- private boolean isCustomised;
-
- // This field contains the whole DTD section of the configuration file.
- private String dtdSection = null;
-
- // Root node of the configuration tree
- private AConfigNode rootNode;
-
- // A list containing all element nodes in the file
- private ArrayList nodeList;
-
- // A list containing all user exclusive element nodes in the file
- // <ParameterDifferences> and <WindowCorners>
- private ArrayList userExclusiveNodeList;
-
- public AConfig(String configFilename, boolean isCustomised) throws Exception
- {
- if(AConfig.keyMap == null)
- AConfig.createKeyMap();
- this.filename = configFilename;
- this.isCustomised = isCustomised;
- parseXML();
- }
-
- /**
- * @return Returns the dtdSection.
- */
- public String getDtdSection() throws Exception
- {
- if(this.dtdSection == null)
- createDTDSection(this.filename);
- return this.dtdSection;
- }
-
- public Iterator getIterator()
- {
- return nodeList.iterator();
- }
-
- void addNode(AConfigNode node)
- {
- nodeList.add(node);
- }
-
- void addUserExclusiveNode(AConfigNode node)
- {
- userExclusiveNodeList.add(node);
- }
-
- /**
- * initialise <code>keyMap</code>.
- */
- private static void createKeyMap()
- {
- keyMap = new Hashtable();
- keyMap.put("Canvas", "startupLayout");
- keyMap.put("UsedWindow", "name");
- keyMap.put("Layout", "name");
- keyMap.put("ENUM", "fn");
- keyMap.put("SENUM", "fn");
- keyMap.put("ICUT", "fn");
- keyMap.put("SICUT", "fn");
- keyMap.put("FCUT", "fn");
- keyMap.put("SFCUT", "fn");
- keyMap.put("INT", "fn");
- keyMap.put("SINT", "fn");
- keyMap.put("FLOAT", "fn");
- keyMap.put("SFLOAT", "fn");
- keyMap.put("LINT", "fn");
- keyMap.put("SLINT", "fn");
- keyMap.put("COLOR", "fn");
- keyMap.put("SCOLOR", "fn");
- keyMap.put("STATUS", "fn");
- }
-
- /**
- * initialise <code>dtdSection</code> based on the dtd part from the
- * configuration file.
- */
- private void createDTDSection(String configFilename) throws Exception
- {
- String dtdStart = "<?xml version=\"1.0\"?>";
- String dtdEnd = "]>";
- String LINE_SEPAR = System.getProperty("line.separator");
-
- this.dtdSection = "";
- try
- {
-
- InputStream is = AUtilities.getFileAsStream(configFilename);
- InputStreamReader isr = new InputStreamReader(is);
- BufferedReader br = new BufferedReader(isr);
-
- String currentLine;
- boolean isInsideDTD = false;
- while(true)
- {
- currentLine = br.readLine();
- if(currentLine == null) return;
- if(dtdStart.equals(currentLine.trim()))
- {
- isInsideDTD = true;
- this.dtdSection += currentLine + LINE_SEPAR;
- }
- else if(dtdEnd.equals(currentLine.trim()))
- {
- isInsideDTD = false;
- this.dtdSection += currentLine + LINE_SEPAR;
- }
- else if(isInsideDTD)
- {
- this.dtdSection += currentLine + LINE_SEPAR;
- }
- }
- }
- catch(FileNotFoundException e)
- {
- String m = "File " + configFilename + " not found, fatal.";
- throw new Exception(m);
- }
- catch(IOException e)
- {
- String m = "I/O exception while reading file " + configFilename;
- throw new Exception(m);
- }
- }
-
- public void createConfigTree(Element rootElement)
- {
- this.nodeList = new ArrayList();
- if(this.isCustomised)
- this.userExclusiveNodeList = new ArrayList();
- this.rootNode = new AConfigNode(null, rootElement, 0, this);
- }
-
- public void parseXML() throws Exception
- {
- DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance();
- factory.setValidating(true);
- DocumentBuilder parser;
- try
- {
- parser = factory.newDocumentBuilder();
- parser.setErrorHandler(new AXMLErrorHandler());
-
- InputStream isConfig = AUtilities.getFileAsStream(this.filename);
- Document xmlConfigDoc = parser.parse(isConfig);
- createConfigTree(xmlConfigDoc.getDocumentElement());
- }
- catch (Exception e)
- {
- throw e;
- }
- }
-
- // Find a node match the sampleNode in the configuration file
- // Return the node if found, null otherwise
- public AConfigNode find(AConfigNode sampleNode)
- {
- for(int i=0; i<nodeList.size(); ++i)
- {
- AConfigNode testNode = (AConfigNode) nodeList.get(i);
- if("Canvas".equals(sampleNode.getNodeName())
- && (testNode.getFullNodeName().equals(sampleNode.getFullNodeName())))
- {
- return testNode;
- }
- else if((testNode.getFullNodeName().equals(sampleNode.getFullNodeName()))
- && (testNode.getKeyValue().equals(sampleNode.getKeyValue())))
- {
- return testNode;
- }
- }
- return null;
- }
-
- // Find a node based on the node name, attribute name and value
- // Return the node if found, null otherwise
- public AConfigNode find(String name, String attName, String attValue)
- {
- for(int i=0; i<nodeList.size(); ++i)
- {
- AConfigNode testNode = (AConfigNode) nodeList.get(i);
- if(name.equals(testNode.getNodeName())
- && attValue.equals(testNode.getAttValue(attName)))
- return testNode;
- }
- return null;
- }
-
- // Find a node based on the node name, attribute name and value,
- // and its parent's node name, attribute name and value.
- // Return the node if found, null otherwise
- public AConfigNode find(String name, String attName, String attValue,
- String parName, String parAttName, String parAttValue)
- {
- for(int i=0; i<nodeList.size(); ++i)
- {
- AConfigNode testNode = (AConfigNode) nodeList.get(i);
- if(name.equals(testNode.getNodeName())
- && attValue.equals(testNode.getAttValue(attName)))
- {
- AConfigNode parNode = testNode.getParent();
-
- if(parName.equals(parNode.getNodeName())
- && parAttValue.equals(parNode.getAttValue(parAttName)))
- return testNode;
- }
- }
- return null;
- }
-
- // Find a parameter node based on the attribute name and value,
- // and its group's name
- // Return the node if found, null otherwise
- //
- // NB: This method is for finding a parameter node with uncertain
- // parameter type, but with a certain parent node name
- public AConfigNode findPar(String attName, String attValue, String parAttValue)
- {
- for(int i=0; i<nodeList.size(); ++i)
- {
- AConfigNode testNode = (AConfigNode) nodeList.get(i);
- if(attValue.equals(testNode.getAttValue(attName)))
- {
- AConfigNode parNode = testNode.getParent();
-
- // <StatusRoot> and <StatusGroup> are skipped when finding parent node
- while("StatusRoot".equals(parNode.getNodeName())
- || "StatusGroup".equals(parNode.getNodeName()))
- {
- parNode = parNode.getParent();
- }
-
- if("Group".equals(parNode.getNodeName())
- && parAttValue.equals(parNode.getAttValue("name")))
- return testNode;
- }
- }
- return null;
- }
-
- /**
- * validate the attribute value
- */
- public boolean validate(AConfigNode node, String attName, String attValue)
- {
- if("Canvas".equals(node.getNodeName()) && "startupLayout".equals(attName))
- {
- if(find("Layout", "name", attValue) == null)
- return false;
- }
- else if("UsedWindow".equals(node.getNodeName()) && "projection".equals(attName))
- {
- if(find("Group", "name", attValue, "SuperGroup", "name", "Projection") == null)
- return false;
- }
- else if("UsedWindow".equals(node.getNodeName()) && "group".equals(attName))
- {
- if(find("Group", "name", attValue) == null)
- return false;
- }
- else if("Layout".equals(node.getNodeName()))
- {
- int numWindows = attValue.length();
- for(int i=0; i<numWindows; ++i)
- {
- String windowName = attValue.substring(i, i+1);
- if(find("Window", "name", windowName, "Layout", "name", node.getKeyValue()) == null)
- return false;
- }
- }
- return true;
- }
-
- public void validateUserExclusiveNode(AConfigNode node)
- {
- if("ParameterDifferences".equals(node.getNodeName()))
- {
- // check validity of each child of <ParameterDifferences>
- Iterator it = node.getChildren().iterator();
- while(it.hasNext())
- {
- // a <DIFFERENCE> node
- AConfigNode childNode = (AConfigNode) it.next();
- String group = childNode.getAttValue("group");
- String window = childNode.getAttValue("windowName");
- String parameter = childNode.getAttValue("name");
- if(find("UsedWindow", "name", window) == null)
- it.remove();
- else
- {
- if(find("Group", "name", group) == null)
- it.remove();
- else
- {
- if(findPar("fn", parameter, group) == null)
- it.remove();
- }
- }
- }
- }
- else if("WindowCorners".equals(node.getNodeName()))
- {
- // check validity of each child of <WindowCorners>
- Iterator it = node.getChildren().iterator();
- while(it.hasNext())
- {
- // a <CORNERS> node
- AConfigNode childNode = (AConfigNode) it.next();
- String window = childNode.getAttValue("windowName");
- if(find("UsedWindow", "name", window) == null)
- it.remove();
- }
- }
- }
-
- /**
- * Replace the greek letters in the source string with UTF entities
- *
- * @param testStr a source string
- * @return the resulting string
- */
- static String replaceGreekLetter(String testStr)
- {
- for (int i=0; i<GREEK_LETTER.length; ++i)
- {
- if (testStr.indexOf(GREEK_LETTER[i]) >= 0)
- testStr = testStr.replaceAll(GREEK_LETTER[i], GREEK_ENTITY[i]);
- }
-
- return testStr;
- }
-
- /**
- * Converts to a string representing the xml data in this configuration
- * file.
- */
- public String convertToString() throws Exception
- {
- return getDtdSection() + "\n\n" + this.rootNode.toString();
- }
-
- /**
- * Converts to a string representing the xml data in this configuration
- * file plus the user exclusive section fom <code>userConfig</code>.
- */
- public String convertToString(AConfig userConfig) throws Exception
- {
- if(!this.isCustomised && userConfig.isCustomised)
- {
- StringBuffer str = new StringBuffer("\n");
- for(int i=0; i<userConfig.userExclusiveNodeList.size(); ++i)
- {
- AConfigNode userExclusiveNode = (AConfigNode) userConfig.userExclusiveNodeList.get(i);
- validateUserExclusiveNode(userExclusiveNode);
- str.append(userExclusiveNode.toString());
- str.append("\n");
- }
- return getDtdSection() + "\n\n" + this.rootNode.toString(str.toString());
- }
- else
- {
- // only add user exclusive section to non-customized configuration
- return toString();
- }
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/config/AConfigNode.java b/graphics/AtlantisJava/src/atlantis/config/AConfigNode.java
deleted file mode 100755
index 751ae988505..00000000000
--- a/graphics/AtlantisJava/src/atlantis/config/AConfigNode.java
+++ /dev/null
@@ -1,263 +0,0 @@
-package atlantis.config;
-
-import java.util.ArrayList;
-import java.util.Iterator;
-import java.util.List;
-import java.util.Set;
-import java.util.jar.Attributes;
-
-import org.w3c.dom.NamedNodeMap;
-import org.w3c.dom.Node;
-import org.w3c.dom.NodeList;
-
-public class AConfigNode
-{
- private String nodeName;
-
- // use fullNodeName combined with keyValue to uniquely identify a parameter
- // in the configuration file
- // NB: keyValue is not empty only if attributes is not empty
- private String fullNodeName;
- private String keyValue = null;
-
- // Layer 0 represents the root node of the xml file,
- // and layer 1 reprensents the layer inside layer 0,
- // and so on.
- private int layer;
-
- private Attributes attributes = null;
- private ArrayList children = null;
- private AConfigNode parent = null;
-
- // if parent is null, elementNode is the root node
- AConfigNode(AConfigNode parent, Node elementNode, int layer, AConfig configObject)
- {
- // add this node into the node list
- configObject.addNode(this);
- this.layer = layer;
-
- // set the full name
- this.parent = parent;
- String parentName = (this.parent != null) ? this.parent.getFullNodeName() + "-" : "";
- this.nodeName = elementNode.getNodeName();
- if("ParameterDifferences".equals(this.nodeName)
- || "WindowCorners".equals(this.nodeName))
- configObject.addUserExclusiveNode(this);
- this.fullNodeName = parentName + this.nodeName;
-
- // set the attributes map
- if(elementNode.hasAttributes())
- {
- NamedNodeMap attMap = elementNode.getAttributes();
- int numAttributes = attMap.getLength();
- this.attributes = new Attributes(numAttributes);
- for(int i=0; i<numAttributes; ++i)
- {
- // each node returned from item(i) is an Attr
- String name = attMap.item(i).getNodeName();
- String value = attMap.item(i).getNodeValue();
- // replace special math operator characters with entity references
- if("=".equals(value))
- value = "&intEqual;";
- else if(">".equals(value))
- value = ">";
- else if("<".equals(value))
- value = "<";
- else if("<,>".equals(value))
- value = "ℜ";
- else if("<=".equals(value))
- value = "≤";
- else if(">=".equals(value))
- value = "≥";
- else if("=,!=,<,<=,>,>=".equals(value))
- value = "∫";
-
- // replace greek letters with entity references
- value = AConfig.replaceGreekLetter(value);
-
- this.attributes.putValue(name, value);
- }
- }
-
- // set the key value
- String keyAttr = (String) AConfig.keyMap.get(this.nodeName);
- if(keyAttr != null)
- {
- String groupName = this.parent.getAttValue("name");
- this.keyValue = ((groupName == null) ? "" : (groupName + "-")) + this.attributes.getValue(keyAttr);
- }
-
- // set the children list
- if(elementNode.hasChildNodes())
- {
- NodeList childList = elementNode.getChildNodes();
- int numChildren = childList.getLength()/2;
- this.children = new ArrayList(numChildren);
- int idx = 0;
- for(int i=0; i<childList.getLength(); ++i)
- {
- // each node returned from item(i) is an Attr
- Node childNode = childList.item(i);
- if (childNode.getNodeType() == Node.ELEMENT_NODE)
- {
- this.children.add(idx++, new AConfigNode(this, childNode, this.layer+1, configObject));
- }
- }
- }
- }
-
- /**
- * @return Returns the nodeName.
- */
- public String getNodeName()
- {
- return this.nodeName;
- }
-
- /**
- * @return Returns the fullNodeName.
- */
- public String getFullNodeName()
- {
- return this.fullNodeName;
- }
-
- /**
- * @return Returns the parent.
- */
- public AConfigNode getParent()
- {
- return this.parent;
- }
-
- /**
- * @return Returns the children.
- */
- public List getChildren()
- {
- return this.children;
- }
-
- /**
- * @return Returns the keyValue.
- */
- public String getKeyValue()
- {
- return this.keyValue;
- }
-
- /**
- * @return Returns the string value of the specified attribute name,
- * or null if not found.
- */
- public String getAttValue(String name)
- {
- if(this.attributes != null)
- return this.attributes.getValue(name);
- else
- return null;
- }
-
- public String setAttValue(String name, String value)
- {
- return this.attributes.putValue(name, value);
- }
-
- // the start line of this xml node
- // e.g. <Nodename att1="value1" att2="value2">
- private String selfStartString()
- {
- StringBuffer str = new StringBuffer();
- for(int i=0; i<this.layer; ++i)
- {
- str.append("\t");
- }
- str.append("<");
- str.append(this.nodeName);
- if(this.attributes != null)
- {
- Set attSet = this.attributes.keySet();
- Iterator it = attSet.iterator();
- while(it.hasNext())
- {
- String attName = it.next().toString();
- String attValue = this.attributes.getValue(attName);
- str.append(" ");
- str.append(attName);
- str.append("=\"");
- str.append(attValue);
- str.append("\"");
- }
- }
- if(this.children == null)
- {
- str.append("/>");
- }
- return str.toString();
- }
-
- private String selfEndString()
- {
- StringBuffer str = new StringBuffer();
- if(this.children == null)
- {
- // if no children, use simplified format (<.../>)
- // so selfStartString contains everything about this node
- return "";
- }
- else
- {
- for(int i=0; i<this.layer; ++i)
- {
- str.append("\t");
- }
- str.append("</");
- str.append(this.nodeName);
- str.append(">");
- }
- return str.toString();
- }
-
- private String childrenString()
- {
- StringBuffer str = new StringBuffer();
- if(this.children == null)
- {
- return "";
- }
- else
- {
- str.append(">\n");
- for(int i=0; i<this.children.size(); ++i)
- {
- AConfigNode child = (AConfigNode) this.children.get(i);
- str.append(child.toString());
- str.append("\n");
- }
- }
- return str.toString();
- }
-
- /**
- * Converts to a string representing the xml data containing this node and
- * all its children.
- */
- public String toString()
- {
- return selfStartString()+childrenString()+selfEndString();
- }
-
- // userExclusiveSection is noly under root node (layer 0)
- public String toString(String userExclusiveSection)
- {
- if(this.layer == 0)
- {
- return selfStartString()+childrenString()+userExclusiveSection+selfEndString();
- }
- else
- {
- return toString();
- }
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/config/AConfigUpdater.java b/graphics/AtlantisJava/src/atlantis/config/AConfigUpdater.java
deleted file mode 100644
index ee87efb78bc..00000000000
--- a/graphics/AtlantisJava/src/atlantis/config/AConfigUpdater.java
+++ /dev/null
@@ -1,405 +0,0 @@
-package atlantis.config;
-
-import java.io.File;
-import java.io.FileOutputStream;
-import java.io.FileInputStream;
-import java.io.FileNotFoundException;
-import java.io.IOException;
-import java.io.OutputStream;
-import java.io.InputStream;
-
-import java.security.MessageDigest;
-import java.security.NoSuchAlgorithmException;
-
-import java.util.Iterator;
-
-import atlantis.utils.AUtilities;
-import atlantis.utils.AAtlantisException;
-import atlantis.utils.ALogger;
-
-
-
-/**
- * This class encapsulates a few static methods which ensure updating
- * of the user's customised Atlantis configuration (or special Atlantis
- * configurations) according to the base Atlantis configuration file
- * configuration/config.xml
- *
- * Updating means synchronising special / customised configurations if
- * XML elements were added/removed from the base configuration file while
- * keeping unchanged specially defined user cuts, views, projections, etc.
- *
- * Methods in this class are also called by an external configuration
- * synchronization tool, so methods should remain static, special treatment
- * of logger, etc.
- *
- * @author
- * Zdenek Maxa - initial update mechanism, creating this extra class, refactoring
- * Qiang Lu - improved reliable updating mechanism as done in AConfig
- *
- */
-public final class AConfigUpdater
-{
- // when AConfigUpdater is called from Atlantis code, logger would behave
- // as configured there. If AConfigUpdater is called externally, logger
- // should be initialised with default values from ALogger
- private static ALogger logger = ALogger.getLogger(AConfigUpdater.class);
-
-
-
-
- /**
- * Methods creates checksum file (name in fileNameChk) of a given file
- * (file name in fileName).
- */
- public static void createChecksumFile(String fileName, String fileNameChk)
- throws AAtlantisException
- {
- try
- {
- logger.debug("Creating checksum file " + fileNameChk +
- " of a file " + fileName);
- byte[] chk = calculateChecksum(fileName);
- File fileChk = new File(fileNameChk);
- OutputStream os = new FileOutputStream(fileChk);
- os.write(chk);
- os.close();
- }
- catch(AAtlantisException ae)
- {
- String m = "Error while creating MD5 checksum file, reason: " +
- ae.getMessage();
- throw new AAtlantisException(m);
- }
- catch(FileNotFoundException fnfe)
- {
- String m = "File not found exception: " + fnfe.getMessage();
- throw new AAtlantisException(m);
- }
- catch(IOException ioe)
- {
- String m = "I/O error while creating file " + fileNameChk;
- throw new AAtlantisException(m);
- }
-
- } // createChecksumFile() -----------------------------------------------
-
-
-
- /**
- * Calculates checksum of a file fileName.
- */
- private static byte[] calculateChecksum(String fileName)
- throws AAtlantisException
- {
- InputStream fis = null;
- try
- {
- logger.debug("Calculating checksum of file: " + fileName);
- fis = AUtilities.getFileAsStream(fileName);
- }
- catch(AAtlantisException ae)
- {
- throw ae;
- }
-
- MessageDigest complete = null;
-
- try
- {
- byte[] buffer = new byte[1024];
- complete = MessageDigest.getInstance("MD5");
- int numRead;
- do
- {
- numRead = fis.read(buffer);
- if (numRead > 0)
- {
- complete.update(buffer, 0, numRead);
- }
- } while (numRead != -1);
-
- fis.close();
- }
- catch(IOException ioe)
- {
- throw new AAtlantisException("Error while reading data from file " +
- fileName);
- }
- catch(NoSuchAlgorithmException nsae)
- {
- throw new AAtlantisException(nsae.getMessage());
- }
-
- logger.debug("Checksum calculated.");
- return complete.digest();
-
- } // calculateChecksum() ------------------------------------------------
-
-
-
- /**
- * Method checks the checksum of input file fileName if its checksum matches
- * checksum stored in the checksum file fileNameChk.
- * Return true if matches, false otherwise.
- */
- public static boolean compareChecksums(String fileName, String fileNameChk)
- throws AAtlantisException
- {
- boolean result = false;
- try
- {
- // checksum of the input file
- byte[] inputFileChecksum = calculateChecksum(fileName);
- // checksum to read stored checksum from file fileNameChk
- // assume the lenght is the same as of the input data file
- byte[] storedChecksum = new byte[inputFileChecksum.length];
- File fileChk = new File(fileNameChk);
- InputStream is = new FileInputStream(fileChk);
- is.read(storedChecksum);
-
- // compare both checksums
- if(new String(storedChecksum).equals(new String(inputFileChecksum)))
- {
- result = true;
- }
- else
- {
- result = false;
- }
-
- is.close();
- }
- catch(Exception e)
- {
- String m = "Error while checking MD5 checksum file, reason: " +
- e.getMessage();
- throw new AAtlantisException(m);
- }
-
- return result;
-
- } // compareChecksums() -------------------------------------------------
-
-
-
- /**
- * @param distConfig - configuration instance from Atlantis distribution
- * (master copy)
- * @param userConfig - user's customised or special configuration which
- * gets updated according to distribution configuration
- */
- private static void updateConfiguration(AConfig distConfig, AConfig userConfig)
- {
- logger.debug("Updating customised configuration ...");
- Iterator distIt = distConfig.getIterator();
- while(distIt.hasNext())
- {
- // For each key node (keyValue is not empty) inside distConfig,
- // test if there is a same node in userConfig.
- AConfigNode testDistNode = (AConfigNode) distIt.next();
- if(testDistNode.getKeyValue() != null)
- {
- AConfigNode matchUserNode = userConfig.find(testDistNode);
- if(matchUserNode != null)
- {
- // update testDistNode based on matchUserNode
- updateNode(distConfig, testDistNode, matchUserNode);
- }
- }
- }
-
- logger.debug("Update finished.");
-
- } // updateConfiguration() ----------------------------------------------
-
-
-
- /**
- * Update a node from configuration.
- */
- private static void updateNode(AConfig distConfig,
- AConfigNode distNode, AConfigNode userNode)
- {
- String[] attStrArray = null;
- if("Canvas".equals(distNode.getNodeName()))
- {
- attStrArray = AConfig.CANVAS_ATT;
- }
- else if("UsedWindow".equals(distNode.getNodeName()))
- {
- attStrArray = AConfig.WINDOW_ATT;
- }
- else if("Layout".equals(distNode.getNodeName()))
- {
- attStrArray = AConfig.LAYOUT_ATT;
- }
- else
- {
- //check the parent Group values
- if(distNode.getParent().getNodeName().equals("Group")){
- attStrArray = AConfig.GROUP_ATT;
- //update the value
- for(int i = 0; i < attStrArray.length; ++i)
- {
- String att = attStrArray[i];
- String distValue = distNode.getParent().getAttValue(att);
- String userValue = userNode.getParent().getAttValue(att);
-
- if(distValue != null && userValue != null && !distValue.equals(userValue))
- {
- if(distConfig.validate(distNode.getParent(), att, userValue))
- {
- distNode.getParent().setAttValue(att, userValue);
- }
- }
- }
- }
-
- //now update parameters inside the Group
- attStrArray = AConfig.PAR_ATT;
- }
-
- // update the value
- for(int i = 0; i < attStrArray.length; ++i)
- {
- String att = attStrArray[i];
- String distValue = distNode.getAttValue(att);
- String userValue = userNode.getAttValue(att);
- if(distValue != null && userValue != null && !distValue.equals(userValue))
- {
- if(distConfig.validate(distNode, att, userValue))
- {
- distNode.setAttValue(att, userValue);
- }
- }
- }
-
- } // updateNode() -------------------------------------------------------
-
-
-
- private static void writeUpdatedConfigurationFile(AConfig distConfig,
- AConfig userConfig,
- String filename)
- throws Exception
- {
- FileOutputStream fo = null;
- fo = new FileOutputStream(filename);
- String updatedConfiguration = distConfig.convertToString(userConfig);
- fo.write(updatedConfiguration.getBytes());
- fo.close();
-
- } // writeUpdatedConfigurationFile() ------------------------------------
-
-
-
- /**
- * Updates customised configuration file to be consistent with the
- * distribution configuration file.
- * @param fileNameDist - distribution configuration file path
- * @param fileNameCustom - customised configuration file path
- * @throws AAException
- */
- public static void updateConfigurationFile(String fileNameDist,
- String fileNameCustom)
- throws AAtlantisException
- {
-
- logger.info("Updating configuration - master " +
- "configuration: " + fileNameDist);
- logger.info("Updating configuration - customised (being updated) " +
- "configuration: " + fileNameCustom);
-
- AConfig distConfig = null;
- AConfig customConfig = null;
-
- // read master (distribution) and customised configurations
- try
- {
- distConfig = new AConfig(fileNameDist, false); // false - is not customised
- }
- catch(Exception e)
- {
- // these however seem to be never thrown because of AXMLErrorHandler
- // in AConfig
- String m = "Could not read/parse distribution configuration " +
- fileNameDist + " reason: " + e.getMessage();
- throw new AAtlantisException(m);
- }
-
- try
- {
- customConfig = new AConfig(fileNameCustom, true); // true - is customised
- }
- catch(Exception e)
- {
- // these however seem to be never thrown because of AXMLErrorHandler
- // in AConfig
- String m = "Could not read/parse customised configuration " +
- fileNameCustom + " reason: " + e.getMessage();
- throw new AAtlantisException(m);
- }
-
-
- // actual update
- try
- {
- updateConfiguration(distConfig, customConfig);
- }
- catch(Throwable t)
- {
- String m = "Updating customised configuration failed, reason: " +
- t.getMessage();
- logger.debug(m, t);
- throw new AAtlantisException(m);
- }
-
-
- // write updated data, first create backup of the source file
-
- logger.info("Creating backup of the customised configuration file ...");
- // file name to backup (rename) the file to
- String fileNameUserBackup = fileNameCustom + "-backup_on_" +
- AUtilities.getDateTimeString();
- File fileCustom = new File(fileNameCustom);
- File fileBackup = new File(fileNameUserBackup);
- boolean renameResult = fileCustom.renameTo(fileBackup);
- if(! renameResult)
- {
- String m = "Could not backup customised configuration " +
- "file, updating configuration failed.";
-
- // if fileNameDist path starts with "//", then it is run from within
- // JAR archive via webstart. update process can't be performed in this
- // case - can't create a backup copy of the fileNameCustom (and can't
- // create an updated file when all is packed in a single JAR file either)
- if(fileNameDist.startsWith("//"))
- {
- m += " Running via webstart, update can't be perfomed in this mode.";
- }
- throw new AAtlantisException(m);
- }
- logger.info(fileNameCustom + " backup created: " + fileNameUserBackup);
-
-
- try
- {
- writeUpdatedConfigurationFile(distConfig, customConfig,
- fileNameCustom);
- }
- catch(Throwable t)
- {
- String m = "Saving updated customised configuration into file " +
- "failed, reason: " + t.getMessage();
- logger.debug(m, t);
- throw new AAtlantisException(m);
- }
-
-
- logger.info(fileNameCustom + " configuration was successfully updated.");
-
- } // updateConfigurationFile() ------------------------------------------
-
-
-} // class AConfigUpdater ===================================================
\ No newline at end of file
diff --git a/graphics/AtlantisJava/src/atlantis/config/ADefaultValues.java b/graphics/AtlantisJava/src/atlantis/config/ADefaultValues.java
deleted file mode 100755
index b2e764499cd..00000000000
--- a/graphics/AtlantisJava/src/atlantis/config/ADefaultValues.java
+++ /dev/null
@@ -1,206 +0,0 @@
-package atlantis.config;
-
-import java.io.BufferedReader;
-import java.io.BufferedWriter;
-import java.io.FileWriter;
-import java.io.FileReader;
-import java.io.FileNotFoundException;
-import java.io.IOException;
-import java.util.Hashtable;
-import java.util.Enumeration;
-import java.util.regex.Pattern;
-import java.util.regex.Matcher;
-
-import atlantis.globals.AGlobals;
-import atlantis.utils.ALogger;
-
-/**
- * The class maintains a few values which are to be remembered
- * from session to session. The class tries to read in values from runtime
- * configuration file $HOME/.Atlantis-runtime_values.txt. The values are
- * stored in a Hashtable and are used as default initialize values. This
- * Hashtable is updated whenever user changes these values. Values are
- * into file at the end of Atlantis session.
- *
- * TODO:
- * last used geometry (will be simpler when TB mode (and Atlantis.mode in
- * general is discontinued), geometry names will be considered
- * after '_' up to the file extension (.xml)
- * last event file
- *
- * @author Zdenek Maxa
- */
-public class ADefaultValues
-{
- // file where the cross-session runtime values are stored
- public static final String CONFIGFILE = System.getProperty("user.home") +
- System.getProperty("file.separator") +
- ".Atlantis-runtime_values.txt";
- // main attribute which holds all data
- private static Hashtable v = new Hashtable();
-
- private static ALogger logger = ALogger.getLogger(ADefaultValues.class);
-
- private ADefaultValues() {}
-
-
-
- /**
- * Variables controled by this class and their default values if the
- * runtime config does not exist or if some values are missing in the file.
- */
- private static void setDefaultValues()
- {
- String FILE_SEPAR = System.getProperty("file.separator");
- String homeDirectory = AGlobals.instance().getHomeDirectory();
- v.put("LastEventFilesSourceDir", homeDirectory + "events" + FILE_SEPAR);
- v.put("LastEventFilesSaveDir", homeDirectory);
- v.put("LastCanvasPlotSaveDir", homeDirectory);
- v.put("JiveXMLServerName", "");
- v.put("JiveXMLServerPort", "48965");
- v.put("GeometryName", "");
-
- } // setDefaultValues() -------------------------------------------------
-
-
-
- private static Hashtable readRuntimeConfigFile()
- {
- Hashtable helpTable = null;
- String line = null;
- String[] l = null;
- String patternLine = ".*=.*";
- Pattern pattern = Pattern.compile(patternLine);
-
- try
- {
- BufferedReader in = new BufferedReader(new FileReader(CONFIGFILE));
- helpTable = new Hashtable();
- logger.info("Atlantis runtime configuration file: " + CONFIGFILE);
-
- while((line = in.readLine()) != null)
- {
- Matcher matcher = pattern.matcher(line);
- if(matcher.matches())
- {
- l = line.split("=");
- if(l != null && l.length == 2)
- {
- logger.debug("Configuration value: " +
- l[0] + " : " + l[1] + " read in");
-
- // remove quotes
- l[1] = l[1].replaceAll("\"", "");
- helpTable.put(l[0].trim(), l[1].trim());
- }
- else
- {
- logger.warn("Line: " + line + " from runtime " +
- "configuration file: " + CONFIGFILE +
- " does not match, line is ignored");
- }
- }
- } // while
-
- // file is successfully read in a helper Hash table
- in.close();
-
- return helpTable;
-
- } // try
- catch(FileNotFoundException ex)
- {
- logger.warn("Runtime configuration file: " + CONFIGFILE +
- " not found, using default runtime values");
- }
- catch(IOException ex)
- {
- logger.error("I/O error while reading " + CONFIGFILE +
- " file, using default runtime values");
- }
-
- return null;
-
- } // readRuntimeConfigFile() --------------------------------------------
-
-
-
- public static void readRuntimeValues()
- {
- setDefaultValues();
- Hashtable help = readRuntimeConfigFile();
- if(help != null)
- {
- for(Enumeration e = v.keys() ; e.hasMoreElements() ;)
- {
- String s = (String) e.nextElement();
- if(help.containsKey(s))
- {
- // keys match, update the value
- v.remove(s);
- v.put(s, help.get(s));
- }
- }
- }
-
- } // readRuntimeValues() ------------------------------------------------
-
-
-
- public static void saveRuntimeValues()
- {
- try
- {
- // if exists, shall be overwritten
- BufferedWriter out = new BufferedWriter(new FileWriter(CONFIGFILE));
-
- for(Enumeration e = v.keys() ; e.hasMoreElements() ;)
- {
- String s = (String) e.nextElement();
- out.write(s + " = \"" + v.get(s) + "\"\n");
- }
- out.close();
- }
- catch(IOException ex)
- {
- logger.error("Can't open " + CONFIGFILE + " for writing, runtime " +
- "configuration values not saved");
- }
-
- } // saveRuntimeValues() ------------------------------------------------
-
-
-
- public static String get(String key)
- {
- if(v.containsKey(key))
- {
- return(String) v.get(key);
- }
- else
- {
- logger.warn("Runtime configuration value: " + key + " does not exist", new Exception());
- return null;
- }
-
- } // get() --------------------------------------------------------------
-
-
-
- public static void set(String key, String value)
- {
- if(v.containsKey(key))
- {
- v.remove(key);
- v.put(key, value);
- }
- else
- {
- logger.warn("Runtime configuration value: " + key + " does not exist", new Exception());
- }
-
- } // set() --------------------------------------------------------------
-
-
-
-} // class ADefaultValues ===================================================
diff --git a/graphics/AtlantisJava/src/atlantis/config/package.html b/graphics/AtlantisJava/src/atlantis/config/package.html
deleted file mode 100644
index 96bd70b4cac..00000000000
--- a/graphics/AtlantisJava/src/atlantis/config/package.html
+++ /dev/null
@@ -1,6 +0,0 @@
-<html>
-<head></head>
-<body>
-<p>Classes for handling the configuration file and its contents.</p>
-</body>
-</html>
diff --git a/graphics/AtlantisJava/src/atlantis/data/A3DPointData.java b/graphics/AtlantisJava/src/atlantis/data/A3DPointData.java
deleted file mode 100755
index b4354b3e564..00000000000
--- a/graphics/AtlantisJava/src/atlantis/data/A3DPointData.java
+++ /dev/null
@@ -1,254 +0,0 @@
-package atlantis.data;
-
-import atlantis.event.*;
-import atlantis.graphics.ACoord;
-import atlantis.parameters.AParameterUtilities;
-import atlantis.projection.*;
-import atlantis.utils.*;
-
-
-public abstract class A3DPointData extends AHitData {
-
- protected float[] rho;
- protected float[] phi;
- protected float[] z;
- protected float[] x;
- protected float[] y;
-
-
- A3DPointData(AHashMap p, AEvent e) {
- super(p,e);
- if(p.get("x")!=null) {
- x=p.getFloatArray("x");
- y=p.getFloatArray("y");
- z=p.getFloatArray("z");
- rho=new float[numData];
- phi=new float[numData];
-
- // this is needed for the moment so that S3D sub and layer can be
- // calculated from rph,phi,z rho phi from x y
- for(int i=0; i<rho.length; ++i) {
- double dx=x[i];
- double dy=y[i];
-
- rho[i]=(float)(Math.sqrt(dx*dx+dy*dy));
- phi[i]=(float)(Math.atan2(dy, dx));
- if(phi[i]<0.) phi[i]+=AMath.TWO_PI;
- }
- } else {
- rho=p.getFloatArray("rho");
- phi=p.getFloatArray("phi");
- z=p.getFloatArray("z");
- x=new float[numData];
- y=new float[numData];
- calculateXY(rho, phi, x, y);
- }
- }
-
-
- public float[] getRho()
- {
- return rho;
- }
-
-
- public float[] getPhi()
- {
- return phi;
- }
-
-
- public float[] getX()
- {
- return x;
- }
-
-
- public float[] getY()
- {
- return y;
- }
-
-
- public float[] getZ()
- {
- return z;
- }
-
-
- protected void calculateRhoPhi()
- {
- calculateRhoPhi(x, y, rho, phi);
- }
-
- protected ACoord getYXUser() {
- makeDrawList();
- double[] h=new double[numDraw];
- double[] v=new double[numDraw];
- int[] index=new int[numDraw];
-
- for(int i=0; i<numDraw; i++) {
- int list=listdl[i];
- h[i]=x[list];
- v[i]=y[list];
- index[i]=list;
- }
- return new ACoord(h, v, index, this);
- }
-
- protected ACoord getRZUser() {
- makeDrawList();
- double[] h=new double[numDraw];
- double[] v=new double[numDraw];
- int[] index=new int[numDraw];
-
- double phiMid=Math.toRadians(parameterStore.get("RZ", "Phi").getD());
- if(phiMid>AMath.TWO_PI) phiMid-=AMath.TWO_PI;
-
- for(int i=0; i<numDraw; i++) {
- int list=listdl[i];
- h[i]=z[list];
- double phiDiff=Math.abs(phi[list]-phiMid);
- if(phiDiff<Math.PI/2.||phiDiff>3*Math.PI/2.)
- {
- v[i] = rho[list];
- }
- else
- {
- v[i] = -rho[list];
- }
- index[i]=list;
-
- }
- return new ACoord(h, v, index, this);
- }
-
- protected ACoord getXZUser() {
- makeDrawList();
- double[] h=new double[numDraw];
- double[] v=new double[numDraw];
- int[] index=new int[numDraw];
-
- double phi0=Math.toRadians(AProjectionXZ.getPhi());
- double cosPhi0=Math.cos(phi0);
- double sinPhi0=Math.sin(phi0);
-
- for(int i=0; i<numDraw; i++) {
- int list=listdl[i];
- h[i]=z[list];
- v[i]=x[list]*cosPhi0+y[list]*sinPhi0;
- index[i]=list;
- }
- return new ACoord(h, v, index, this);
- }
-
- protected ACoord getYZUser() {
- makeDrawList();
- double[] h=new double[numDraw];
- double[] v=new double[numDraw];
- int[] index=new int[numDraw];
-
- double phi0=Math.toRadians(AProjectionXZ.getPhi());
- double cosPhi0=Math.cos(phi0);
- double sinPhi0=Math.sin(phi0);
-
- for(int i=0; i<numDraw; i++) {
- int list=listdl[i];
- h[i]=z[list];
- v[i]=y[list]*cosPhi0-x[list]*sinPhi0;
- index[i]=list;
- }
- return new ACoord(h, v, index, this);
- }
-
- protected ACoord get3DUser() {
- makeDrawList();
- double[][] hvo=AProjection3D.getRotated(numDraw, listdl, x, y, z);
- double[] h=hvo[0];
- double[] v=hvo[1];
- int[] index=new int[numDraw];
- for(int i=0; i<numDraw; i++) {
- int list=listdl[i];
- index[i]=list;
- }
- return new ACoord(h, v, index, this);
- }
-
-// does not fit in normal scheme
- public double[][] get3DPoints() {
- makeDrawList();
- double[][] xyz =new double[numDraw][3];
- for(int i=0; i<numDraw; i++) {
- int list=listdl[i];
- xyz[i][0]=x[list];
- xyz[i][1]=y[list];
- xyz[i][2]=z[list];
- }
- return xyz;
- }
-
-// does not fit in normal scheme
- public int[] get3DPointsIndex() {
- makeDrawList();
- int[] index=new int[numDraw];
- for(int i=0; i<numDraw; i++)
- index[i]=listdl[i];
- return index;
- }
-
- protected ACoord getFZUser() {
- makeDrawList();
- double[] h=new double[numDraw];
- double[] v=new double[numDraw];
- int[] index=new int[numDraw];
-
- for(int i=0; i<numDraw; i++) {
- int list=listdl[i];
- h[i]=z[list];
- v[i]=Math.toDegrees(phi[list]);
- index[i]=list;
- }
- return new ACoord(h, v, index, this).includePhiWrapAround("FZ");
- }
-
- protected ACoord getFRUser() {
- makeDrawList();
- double[] h=new double[numDraw];
- double[] v=new double[numDraw];
- int[] index=new int[numDraw];
-
- for(int i=0; i<numDraw; i++) {
- int list=listdl[i];
- h[i]=rho[list];
- v[i]=Math.toDegrees(phi[list]);
- index[i]=list;
- }
- return new ACoord(h, v, index, this).includePhiWrapAround("FR");
- }
-
- protected ACoord getVPUser() {
- makeDrawList();
- // each point is drawn twice
- int numTotal=2*numDraw;
- double[] h=new double[numTotal];
- double[] v=new double[numTotal];
- int[] index=new int[numTotal];
-
- double[] sign=new double[] {-1., 1.};
- int num=0;
-
- for(int i=0; i<numDraw; i++) {
- int list=listdl[i];
- double eta=AParameterUtilities.eta(z[list], rho[list]);
- double delEta=AProjectionVP.getDeltaEta(rho[list], z[list]);
- for(int j=0; j<2; j++) {
- h[num]=eta+sign[j]*delEta;
- v[num]=AParameterUtilities.phi(x[list], y[list]);
- index[num]=list;
- num++;
- }
- }
- return new ACoord(h, v, index, this).includePhiWrapAround("VP");
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/data/AAODData.java b/graphics/AtlantisJava/src/atlantis/data/AAODData.java
deleted file mode 100644
index 8c412fd1139..00000000000
--- a/graphics/AtlantisJava/src/atlantis/data/AAODData.java
+++ /dev/null
@@ -1,359 +0,0 @@
-package atlantis.data;
-
-import atlantis.event.AData;
-import atlantis.event.*;
-import java.util.Vector;
-
-import atlantis.canvas.AWindow;
-import atlantis.graphics.ACoord;
-import atlantis.graphics.AGraphics;
-import atlantis.projection.AProjection2D;
-import atlantis.projection.AProjectionVP;
-import atlantis.utils.AHashMap;
-import atlantis.utils.AMath;
-
-public abstract class AAODData extends AData
-{
- protected float[] eta;
- protected float[] phi;
- protected float[] pT;
-
- AAODData(AHashMap p, AEvent e)
- {
- super(p,e);
- eta = p.getFloatArray("eta");
- phi = p.getFloatArray("phi");
- pT = p.getFloatArray("pt");
- int[] pdgId = p.getUnsureIntArray("pdgId");
- if(pdgId != null)
- {
- for(int i=0; i<pT.length; i++)
- pT[i] *= -AMath.getSign(pdgId[i]);
- }
-
- if (p.get("clusterKey") != null)
- {
- int[] clusterLinkCount = p.getUnsureIntArray("clusterLinkCount");
- event.getAssociationManager().add(new AObjectsAssociation(getFullName(), "Cluster",
- p.getStringArray("clusterKey"), p.getIntArray("clusterIndex"), clusterLinkCount, event));
- }
- if (p.get("trackKey") != null)
- {
- int[] trackLinkCount = p.getUnsureIntArray("trackLinkCount");
- event.getAssociationManager().add(new AObjectsAssociation(getFullName(), "Track",
- p.getStringArray("trackKey"), p.getIntArray("trackIndex"), trackLinkCount, event));
- }
- }
-
-
- public float getEta(int index)
- {
- return eta[index];
- }
-
-
- public float getPhi(int index)
- {
- return phi[index];
- }
-
-
- public float getPT(int index)
- {
- return pT[index];
- }
-
-
- public float[] getEta()
- {
- return eta;
- }
-
-
- public float[] getPhi()
- {
- return phi;
- }
-
-
- public float[] getPT()
- {
- return pT;
- }
-
-
- protected int internalColor()
- {
- int colorFunction=parameterStore.get(PARAMETER_GROUP, "ColorFunction").getI();
-
- if(colorFunction==0)
- colorByConstant();
- else if(colorFunction==1)
- colorByIndex();
-
- return 1;
- }
-
- public String getNameScreenName()
- {
- return getParameterGroup();
- }
-
- protected int getDrawOrFill()
- {
- return AGraphics.FILL;
- }
-
- protected void applyCuts()
- {
- cutIndex();
- cutPhi(phi);
- cutEta(eta);
- }
-
- // info on AOD data contained in V-Plot rubberband selection
- public String getVPHitInfo()
- {
- makeDrawList();
- if (numDraw == 0)
- return "";
- double sumP = 0.;
- double sumPt = 0.;
-
- for (int i = 0; i < numDraw; ++i)
- {
- sumPt += Math.abs(pT[listdl[i]]);
- sumP += Math.abs(pT[listdl[i]] / Math.cos(AMath.lambda(eta[listdl[i]])));
- }
-
- StringBuffer msg = new StringBuffer("");
- msg.append(numDraw);
- msg.append(" ");
- msg.append(getFullName());
- msg.append(" sum(PT) = ");
- msg.append(String.format("%.1f", sumPt));
- msg.append(" sum(P) = ");
- msg.append(String.format("%.1f",sumP));
-
- return msg.toString();
- }
-
- public void draw(AWindow window, AGraphics ag, AProjection2D projection)
- {
- if(projection instanceof AProjectionVP)
- {
- drawVP(window, ag, projection);
- }
- else
- {
- super.draw(window, ag, projection);
- }
- }
-
- protected ACoord getYXUser()
- {
- makeDrawList();
- double[][][] hv = new double[2][numDraw][4];
- int[] index = new int[numDraw];
-
- double dphi = Math.toRadians(0.5);
- for(int i=0; i<numDraw; i++)
- {
- int list = listdl[i];
- double phiPlus = phi[list] + dphi;
- double phiMinus = phi[list] - dphi;
- double cosPlus = Math.cos(phiPlus);
- double sinPlus = Math.sin(phiPlus);
- double cosMinus = Math.cos(phiMinus);
- double sinMinus = Math.sin(phiMinus);
- //same rhoMax/Minus values used in AJetData
- double rhoMax = 1200;
- double rhoMinus = 400;
- //if no composite particles increase AOD size
- Vector<String> keys = event.getCollections().get("CompositeParticle");
- if(keys == null || !parameterStore.get("Data", "CompositeParticle").getStatus())
- rhoMax=1200;
- else if(PARAMETER_GROUP.equals("CompositeParticle"))
- {
- // display composite particle outside of normal AOD data
- rhoMax=1200;
- rhoMinus=800;
- }
-
- double maxEnergy = parameterStore.get("Projection", "EnergyMax").getD();
- double rhoPlus = rhoMax;
- double s = 10;
- if(Math.abs(pT[list]) < maxEnergy)
- rhoPlus = rhoMinus + (rhoMax - rhoMinus) * s *Math.abs(pT[list]) / maxEnergy;
-
- // 4 corners of the cell area
- // x0, y0
- hv[0][i][0] = rhoMinus * cosPlus;
- hv[1][i][0] = rhoMinus * sinPlus;
- // x1, y1
- hv[0][i][1] = rhoPlus * cosPlus;
- hv[1][i][1] = rhoPlus * sinPlus;
- // x2, y2
- hv[0][i][2] = rhoPlus * cosMinus;
- hv[1][i][2] = rhoPlus * sinMinus;
- // x3, y3
- hv[0][i][3] = rhoMinus * cosMinus;
- hv[1][i][3] = rhoMinus * sinMinus;
-
- index[i] = list;
- }
- return new ACoord(hv, index, this, ACoord.POLYGONS);
- }
-
- protected ACoord getFRUser()
- {
- ACoord coordFR = getYXUser().convertYXToFR().includePhiWrapAround("FR");
- return coordFR;
- }
-
- protected ACoord getRZUser()
- {
- makeDrawList();
- double[][][] hv = new double[2][numDraw][4];
- int[] index = new int[numDraw];
-
- double dtheta = Math.toRadians(0.5);
- for(int i=0; i<numDraw; i++)
- {
- int list = listdl[i];
- double phiMid = Math.toRadians(parameterStore.get("RZ", "Phi").getD());
- double phiDiff = Math.abs(phi[list]-phiMid);
- double rSign;
- if (phiDiff > Math.PI/2. && phiDiff <= 3*Math.PI/2.)
- rSign = -1;
- else
- rSign = 1;
-
- // calculate theta based on the eta value
- double theta = Math.atan(Math.exp(-Math.abs(eta[list]))) * 2.0;
- if ((eta[list] > 0.) && (rSign == -1))
- theta = 2 * Math.PI - theta;
- else if ((eta[list] < 0.) && (rSign == -1))
- theta += Math.PI;
- else if ((eta[list] < 0.) && (rSign == 1))
- theta = Math.PI - theta;
-
- double thetaPlus = theta + dtheta;
- double thetaMinus = theta - dtheta;
- double cosPlus = Math.cos(thetaPlus);
- double sinPlus = Math.sin(thetaPlus);
- double cosMinus = Math.cos(thetaMinus);
- double sinMinus = Math.sin(thetaMinus);
-
- // decide the region based on the theta value
- final byte TOP_BOTTOM = 0;
- final byte LEFT_RIGHT = 1;
- byte region = TOP_BOTTOM;
- // hard-coded value is based on the values in Geometry
- if(Math.abs(Math.tan(theta)) < 0.8)
- region = LEFT_RIGHT;
-
- double radiusMinus = 0.;
- switch(region)
- {
- case TOP_BOTTOM:
- if(PARAMETER_GROUP.equals("CompositeParticle"))
- radiusMinus = 750 / Math.abs(Math.sin(theta));
- else
- radiusMinus = 550 / Math.abs(Math.sin(theta));
- break;
- case LEFT_RIGHT:
- if(PARAMETER_GROUP.equals("CompositeParticle"))
- radiusMinus = 850 / Math.abs(Math.cos(theta));
- else
- radiusMinus = 700 / Math.abs(Math.cos(theta));
- break;
- }
- //same rhoMax/Minus values used in AJetData
- double radiusMax = radiusMinus + 500;
- //if no composite particles increase AOD size
- Vector keys = (Vector) event.getCollections().get("CompositeParticle");
- if(keys == null || !parameterStore.get("Data", "CompositeParticle").getStatus())
- radiusMax+=200;
- double maxEnergy = parameterStore.get("Projection", "EnergyMax").getD();
- double radiusPlus = radiusMax;
- double s = 10;
- if(Math.abs(pT[list]) < maxEnergy)
- radiusPlus = radiusMinus + (radiusMax - radiusMinus) * s * Math.abs(pT[list]) / maxEnergy;
-
- // 4 corners of the cell area
- // x0, y0
- hv[0][i][0] = radiusMinus * cosPlus;
- hv[1][i][0] = radiusMinus * sinPlus;
- // x1, y1
- hv[0][i][1] = radiusPlus * cosPlus;
- hv[1][i][1] = radiusPlus * sinPlus;
- // x2, y2
- hv[0][i][2] = radiusPlus * cosMinus;
- hv[1][i][2] = radiusPlus * sinMinus;
- // x3, y3
- hv[0][i][3] = radiusMinus * cosMinus;
- hv[1][i][3] = radiusMinus * sinMinus;
-
- index[i] = list;
- }
- return new ACoord(hv, index, this, ACoord.POLYGONS);
- }
-
- protected ACoord getVPUser()
- {
- makeDrawList();
- double[] h = new double[numDraw];
- double[] v = new double[numDraw];
- int[] index=new int[numDraw];
-
- for(int i=0; i<numDraw; i++)
- {
- int list=listdl[i];
- h[i]=eta[list];
- v[i]=Math.toDegrees(phi[list]);
- index[i]=list;
- }
- return new ACoord(h, v, index, this).includePhiWrapAround("VP");
- }
-
- private void drawVP(AWindow window, AGraphics ag, AProjection2D projection)
- {
- ACoord centers = window.calculateDisplay(getUser(projection));
- int[] drawlist = centers.index;
- double eLimit = 0.025;
- int numPoints = 25;
- if(PARAMETER_GROUP.equals("CompositeParticle"))
- numPoints = 5;
- double[][][] hv = new double[2][drawlist.length][numPoints]; //circle
- // a cross at centre
- double[][][] hv_cross1 = new double[2][drawlist.length][2];
- double[][][] hv_cross2 = new double[2][drawlist.length][2];
- int crossLength = 6;
-
- for(int i=0; i<drawlist.length; ++i)
- {
- int list = drawlist[i];
- double e;
- e = Math.abs(pT[list]);
- int d = (int)(Math.sqrt((e/eLimit)/Math.PI));
- if(d == 0) d = 1;
- for(int j=0; j<numPoints; j++)
- {
- hv[0][i][j]=centers.hv[0][0][i]+d*Math.cos(Math.PI*2*j/(numPoints-1));
- hv[1][i][j]=centers.hv[1][0][i]+d*Math.sin(Math.PI*2*j/(numPoints-1));
- }
- for(int j=0; j<2; j++)
- {
- hv_cross1[0][i][j]=centers.hv[0][0][i]+crossLength/2*Math.cos(Math.PI*(1+4*j)/4);
- hv_cross1[1][i][j]=centers.hv[1][0][i]+crossLength/2*Math.sin(Math.PI*(1+4*j)/4);
- hv_cross2[0][i][j]=centers.hv[0][0][i]+crossLength/2*Math.cos(Math.PI*(3+4*j)/4);
- hv_cross2[1][i][j]=centers.hv[1][0][i]+crossLength/2*Math.sin(Math.PI*(3+4*j)/4);
- }
- }
- ag.draw(new ACoord(hv, drawlist, this, ACoord.POLYLINES));
- ag.draw(new ACoord(hv_cross1, drawlist, this, ACoord.POLYLINES));
- ag.draw(new ACoord(hv_cross2, drawlist, this, ACoord.POLYLINES));
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/data/ABJetData.java b/graphics/AtlantisJava/src/atlantis/data/ABJetData.java
deleted file mode 100755
index 7c047a26efa..00000000000
--- a/graphics/AtlantisJava/src/atlantis/data/ABJetData.java
+++ /dev/null
@@ -1,134 +0,0 @@
-package atlantis.data;
-
-import atlantis.event.*;
-import atlantis.globals.AGlobals;
-import atlantis.utils.AHashMap;
-import atlantis.utils.AMath;
-import atlantis.utils.A3Vector;
-import atlantis.utils.A4Vector;
-
-/**
- * Reconstructed B-Jet
- */
-public class ABJetData extends AAODData
-{
- private float[] lhSig;
- private float[] weight;
- private String[] label;
- private float[] mass;
- //Variable to ensure backwards compatability
- protected boolean has4Vect = false;
-
- ABJetData(AHashMap p, AEvent e)
- {
- super(p,e);
- lhSig=p.getFloatArray("lhSig");
- weight=p.getFloatArray("weight");
- label=p.getUnsureStringArray("label");
- if (p.get("mass") != null) {
- mass=p.getFloatArray("mass");
- has4Vect = true;
- }
- }
-
- public String getParameterGroup()
- {
- return "BJet";
- }
-
- public float getweight(int index)
- {
- return weight[index];
- }
-
- public float getlhSig(int index)
- {
- return lhSig[index];
- }
-
- public String getLabel(int index)
- {
- return label[index];
- }
-
- public A4Vector get4Vector(int num, int[] list)
- {
- A4Vector sum = new A4Vector();
- if(has4Vect){
- for (int i = 0; i < num; ++i)
- {
- int k = list[i];
- A4Vector start = new A4Vector();
- start.setPtEtaPhiM(pT[k],eta[k],phi[k],mass[k]);
- sum.add(start);
- }
- }else{
- for (int i = 0; i < num; ++i)
- {
- int k = list[i];
- A3Vector start = A3Vector.fromRhoPhiZ(0., 0., 0.);
- double tL = AMath.tanLambda(eta[k]);
- A3Vector stop = A3Vector.fromRhoPhiZ(1., phi[k], tL);
- A3Vector v = (stop.subtract(start)).normalize();
- double p = pT[k] / Math.sqrt(1. - v.z * v.z);
- sum.add(new A4Vector(v.scale(p), 0.));
- }
- }
- return sum;
- }
-
-
- protected void applyCuts()
- {
- super.applyCuts();
- cut("CutsObjects", "BJetPt", " |ET|", pT);
- cut("CutsObjects", "BJetlhSig", " |lhSig|", lhSig);
- cut("CutsObjects", "BJetweight", " |weight|", weight);
- }
-
- public String getHitInfo(int index)
- {
- int simpleOutput = AGlobals.instance().getSimpleOutput();
- if(simpleOutput>0){
- String output = getNameScreenName()+" index: " + index;
- if(simpleOutput==1 || simpleOutput==3)
- output+= "\n PT="+String.format("%.3f",pT[index])+" GeV\n "+
- AMath.ETA+" = "+String.format("%.3f",eta[index])+"\n "+
- AMath.PHI+" = "+String.format("%.3f",phi[index])+AMath.DEGREES;
- if(simpleOutput==2 || simpleOutput==3)
- output+= "\n Px="+String.format("%.3f",pT[index]*Math.cos(phi[index]))+" GeV "+
- "\n Py="+String.format("%.3f",pT[index]*Math.sin(phi[index]))+" GeV "+
- "\n Pz="+String.format("%.3f",pT[index]*Math.sinh(eta[index]))+" GeV ";
- return output;
- }
-
- StringBuffer msg = new StringBuffer(getNameScreenName());
- msg.append(" (id: " + id[index] + " index: " + index + ")");
- if(label != null)
- {
- msg.append("\n label = ");
- msg.append(label[index]);
- }
- msg.append("\n PT = ");
- msg.append(String.format("%.3f",pT[index]));
- msg.append(" GeV\n P = ");
- msg.append(String.format("%.3f",Math.abs(pT[index]/Math.cos(AMath.lambda(eta[index])))));
- msg.append(" GeV\n ");
- msg.append(AMath.ETA);
- msg.append(" = ");
- msg.append(String.format("%.3f",eta[index]));
- msg.append("\n ");
- msg.append(AMath.PHI);
- msg.append(" = ");
- msg.append(String.format("%.3f",phi[index]));
- msg.append(AMath.DEGREES);
- msg.append(" (" + String.format("%.3f",phi[index]) + " rad)");
- msg.append("\n lhSig = ");
- msg.append(lhSig[index]);
- msg.append("\n weight = ");
- msg.append(weight[index]);
-
- return msg.toString();
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/data/ACSCDData.java b/graphics/AtlantisJava/src/atlantis/data/ACSCDData.java
deleted file mode 100755
index d724dfe7fc7..00000000000
--- a/graphics/AtlantisJava/src/atlantis/data/ACSCDData.java
+++ /dev/null
@@ -1,304 +0,0 @@
-package atlantis.data;
-
-import atlantis.event.*;
-import atlantis.graphics.ACoord;
-import atlantis.graphics.AGraphics;
-import atlantis.output.ALogInterface;
-import atlantis.output.AOutput;
-import atlantis.parameters.AParameter;
-import atlantis.parameters.AParameterUtilities;
-import atlantis.projection.AProjectionYX;
-import atlantis.utils.AAtlantisException;
-import atlantis.utils.AHashMap;
-import atlantis.utils.AIdHelper;
-import atlantis.utils.ALogger;
-
-public class ACSCDData extends AMuonHitData
-{
- private static final double CSC_TILT_ANGLE = Math.toRadians(-11.59);
-
- float[] charge;
- float[] length;
- int[] gasGap;
-
- private static ALogger logger = ALogger.getLogger(ACSCDData.class);
-
- public String getParameterGroup()
- {
- return "CSC";
- }
-
- public String getName()
- {
- return "CSCD";
- }
-
- public String getNameScreenName()
- {
- return "CSC Digits";
- }
-
- ACSCDData(AHashMap p, AEvent e)
- {
- super(p,e);
-
- if (p.get("length") != null) {
- length=p.getFloatArray("length");
- } else {
- // If no length is given, just use an arbitrary minimum length
- length = new float[numData];
- for (int i=0; i<numData; i++)
- length[i] = 10.f;
- }
-
- charge=p.getFloatArray("charge");
-
- gasGap = new int[numData];
- for (int i=0; i<numData; i++) {
- try {
- gasGap[i] = AIdHelper.cscWireLayer(id[i]);
- } catch (AAtlantisException aex) {
- gasGap[i] = 0;
- }
- }
- }
-
- protected int getStation(int index)
- {
- return 0;
- }
-
- protected int getSub(int index)
- {
- try {
- if (AIdHelper.stationEta(id[index]) < 0) {
- return 0;
- } else {
- return 1;
- }
-
- } catch (AAtlantisException e) {
- logger.error("Problem decoding TGC identifier", e);
- }
-
- return 0;
- }
-
- public int getSector(int index)
- {
- try {
- String stationName = AIdHelper.stationName(id[index]);
-
- if (stationName.charAt(2) == 'L') {
- return 2 * (AIdHelper.stationPhi(id[index]) - 1);
- } else {
- return 2 * (AIdHelper.stationPhi(id[index]) - 1) + 1;
- }
- } catch (AAtlantisException e) {
- logger.error("Problem decoding CSCD identifier", e);
- }
-
- return 0;
- }
-
- protected boolean getMeasuresPhi(int index)
- {
- try {
- if (AIdHelper.cscMeasuresPhi(id[index]) == 1) {
- return true;
- }
- } catch (AAtlantisException e) {
- logger.error("Problem decoding CSCD identifier", e);
- }
-
- return false;
- }
-
- protected void applyCuts()
- {
- super.applyCuts();
- cut("CutsMuon", "Charge", " Charge", charge);
- cutPhi(phi);
- cutEta(rho, z);
- }
-
- protected int getDrawOrFill()
- {
- return AGraphics.FILL;
- }
-
- protected ACoord getYXUser()
- {
- makeDrawList();
- if (parameterStore.get("YX", "Mode").getI() != AProjectionYX.MODE_MDT_INNER)
- return ACoord.NO_DATA;
-
- AParameter cscGasGap = parameterStore.get("YX", "CSCGasGap");
- if (cscGasGap.getStatus())
- cutArray(gasGap, cscGasGap.getI(), "CSC Gas Gap");
-
- double[][][] hv = new double[2][numDraw][2];
- int index[] = new int[numDraw];
-
- try {
- for (int i=0; i<numDraw; i++) {
- int j = listdl[i];
- index[i] = j;
-
- if (AIdHelper.cscMeasuresPhi(id[j]) == 1) {
- double phi = Math.atan2(y[j], x[j]);
- double rho = Math.sqrt(x[j]*x[j] + y[j]*y[j]);
- double drho = length[j]/2.;
-
- hv[0][i][0] = (rho - Math.cos(CSC_TILT_ANGLE) * drho) * Math.cos(phi);
- hv[1][i][0] = (rho - Math.cos(CSC_TILT_ANGLE) * drho) * Math.sin(phi);
- hv[0][i][1] = (rho + Math.cos(CSC_TILT_ANGLE) * drho) * Math.cos(phi);
- hv[1][i][1] = (rho + Math.cos(CSC_TILT_ANGLE) * drho) * Math.sin(phi);
- } else {
- double phi = Math.atan2(y[j], x[j]);
- double rho = Math.sqrt(x[j]*x[j] + y[j]*y[j] + length[j]*length[j]/4.);
- double dphi = Math.asin((length[j]/2.) / rho);
-
- hv[0][i][0] = rho * Math.cos(phi - dphi);
- hv[1][i][0] = rho * Math.sin(phi - dphi);
- hv[0][i][1] = rho * Math.cos(phi + dphi);
- hv[1][i][1] = rho * Math.sin(phi + dphi);
- }
- }
-
- return new ACoord(hv, index, this);
- } catch (AAtlantisException e) {
- AOutput.append("Error decoding CSC identifier: " + e.getMessage(), ALogInterface.BAD_COMMAND);
- return ACoord.NO_DATA;
- }
- }
-
- protected ACoord getFRUser()
- {
- return getYXUser().convertYXToFR().includePhiWrapAround("FR");
- }
-
- protected ACoord getXZRZUser(int sign[])
- {
- double[][][] hv = new double[2][numDraw][];
- int index[] = new int[numDraw];
-
- try {
- for (int i=0; i<numDraw; i++) {
- int j = listdl[i];
- index[i] = j;
-
- double rho = Math.sqrt(x[j]*x[j] + y[j]*y[j]);
-
- if (AIdHelper.cscMeasuresPhi(id[j]) == 1) {
- double drho = length[j]/2.;
- if(z[j] < 0){
- hv[0][i] = new double[] {z[j] - sign[i]*Math.sin(CSC_TILT_ANGLE) * drho,
- z[j] + sign[i]*Math.sin(CSC_TILT_ANGLE) * drho };
-
- hv[1][i] = new double[] { sign[i] * (rho + sign[i]*Math.cos(CSC_TILT_ANGLE) * drho),
- sign[i] * (rho - sign[i]*Math.cos(CSC_TILT_ANGLE) * drho) };
-
- }else{
- hv[0][i] = new double[] {z[j] - Math.sin(CSC_TILT_ANGLE) * drho,
- z[j] + Math.sin(CSC_TILT_ANGLE) * drho };
-
-
- hv[1][i] = new double[] { sign[i] * (rho - Math.cos(CSC_TILT_ANGLE) * drho),
- sign[i] * (rho + Math.cos(CSC_TILT_ANGLE) * drho) };
- }
-
-
-
- } else {
- hv[0][i] = new double[] { z[j] };
- hv[1][i] = new double[] { sign[i] * rho };
- }
-
- }
-
- return new ACoord(hv, index, this);
- }
- catch (AAtlantisException e) {
- AOutput.append("Error decoding CSC identifier: " + e.getMessage(), ALogInterface.BAD_COMMAND);
- return ACoord.NO_DATA;
- }
-
- }
-
-
-
-
- protected ACoord getXZUser() {
- makeDrawList();
- cutMuonSector(sector);
-
- int[] sign = new int[numDraw];
- int sect = (int) Math.round(parameterStore.get("XZ", "Phi").getD() / 22.5);
-
- for(int i=0; i<numDraw; i++) {
- if (sector[listdl[i]] == sect)
- sign[i] = 1;
- else
- sign[i] = -1;
- }
-
- return getXZRZUser(sign);
- }
-
- protected ACoord getRZUser() {
- makeDrawList();
-
- int[] sign = new int[numDraw];
- for (int i=0; i<numDraw; i++) {
- int j = listdl[i];
- sign[i] = AParameterUtilities.getRhoSign(x[j], y[j]);
- }
-
- return getXZRZUser(sign);
- }
-
- protected ACoord getFZUser()
- {
- double[][][] hv = new double[2][numDraw][];
- int index[] = new int[numDraw];
-
- try {
- for (int i=0; i<numDraw; i++) {
- int j = listdl[i];
- index[i] = j;
-
- double rho = Math.sqrt(x[j]*x[j] + y[j]*y[j]);
- double phi = Math.toDegrees(Math.atan2(y[j], x[j]));
-
- if (AIdHelper.cscMeasuresPhi(id[j]) == 1) {
- double drho = length[j]/2.;
-
- hv[0][i] = new double[] { z[j] - Math.sin(CSC_TILT_ANGLE) * drho,
- z[j] + Math.sin(CSC_TILT_ANGLE) * drho };
- hv[1][i] = new double[] { phi, phi };
- } else {
- double dphi = Math.toDegrees(Math.atan2(length[j]/2., rho));
-
- hv[0][i] = new double[] { z[j], z[j] };
- hv[1][i] = new double[] { phi-dphi, phi+dphi };
- }
- }
-
- return new ACoord(hv, index, this);
- } catch (AAtlantisException e) {
- AOutput.append("Error decoding CSCD identifier: " + e.getMessage(), ALogInterface.BAD_COMMAND);
- return ACoord.NO_DATA;
- }
- }
-
- // only constant color possible for the strips
- protected int internalColor()
- {
- int constantColor=parameterStore.get(PARAMETER_GROUP, "Strip").getI();
- for(int i=0; i<numData; i++)
- color[i]=(byte)constantColor;
- return 0;
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/data/ACSCData.java b/graphics/AtlantisJava/src/atlantis/data/ACSCData.java
deleted file mode 100755
index 5149a5133bd..00000000000
--- a/graphics/AtlantisJava/src/atlantis/data/ACSCData.java
+++ /dev/null
@@ -1,197 +0,0 @@
-package atlantis.data;
-
-import atlantis.event.*;
-import atlantis.graphics.ACoord;
-import atlantis.graphics.AGraphics;
-import atlantis.utils.AAtlantisException;
-import atlantis.utils.AHashMap;
-import atlantis.utils.AIdHelper;
-import atlantis.utils.ALogger;
-
-public class ACSCData extends AMuonHitData
-{
- float[] sigma;
-
- private static ALogger logger = ALogger.getLogger(ACSCData.class);
-
- public String getParameterGroup()
- {
- return "CSC";
- }
-
- public String getName()
- {
- return "CSC";
- }
-
- public String getNameScreenName()
- {
- return "CSC";
- }
-
- ACSCData(AHashMap p, AEvent e)
- {
- super(p,e);
- sigma=p.getFloatArray("sigma");
- }
-
- protected int getStation(int index)
- {
- return 0;
- }
-
- protected int getSub(int index)
- {
- try {
- if (AIdHelper.stationEta(id[index]) < 0) {
- return 0;
- } else {
- return 1;
- }
-
- } catch (AAtlantisException e) {
- logger.error("Problem decoding TGC identifier", e);
- }
-
- return 0;
- }
-
- public int getSector(int index)
- {
- try {
- String stationName = AIdHelper.stationName(id[index]);
-
- if (stationName.charAt(2) == 'L') {
- return 2 * (AIdHelper.stationPhi(id[index]) - 1);
- } else {
- return 2 * (AIdHelper.stationPhi(id[index]) - 1) + 1;
- }
- } catch (AAtlantisException e) {
- logger.error("Problem decoding CSC identifier", e);
- }
-
- return 0;
- }
-
- protected boolean getMeasuresPhi(int index)
- {
- try {
- if (AIdHelper.cscMeasuresPhi(id[index]) == 1) {
- return true;
- }
- } catch (AAtlantisException e) {
- logger.error("Problem decoding CSC identifier", e);
- }
-
- return false;
- }
-
- protected void applyCuts()
- {
- super.applyCuts();
- cutPhi(phi);
- cutEta(rho, z);
- }
-
- protected ACoord getYXUser()
- {
- makeDrawList();
- int mode=parameterStore.get("YX", "Mode").getI();
- if(mode!=5)
- numDraw=0;
-
- double[] h=new double[numDraw];
- double[] v=new double[numDraw];
- int[] index=new int[numDraw];
-
- for(int i=0; i<numDraw; i++)
- {
- int list=listdl[i];
- h[i]=x[list];
- v[i]=y[list];
- index[i]=list;
- }
- return new ACoord(h, v, index, this);
- }
-
- protected ACoord getXZRZUser(int[] sign)
- {
- int numPoints=2;
-
- double[][][] hv=new double[2][numDraw][numPoints];
- int[] index=new int[numDraw];
-
- // space point resolution is 60um in rz and 5mm in rphi (due to no uniform b field)
- // from muonTDR page 201
- // double dRho=0.254;
- // double dZMax=1.25;
-
- double alpha=-11.59;
- double sinAlphaCopy=Math.sin(Math.toRadians(alpha));
- double cosAlphaCopy=Math.cos(Math.toRadians(alpha));
-
- for(int i=0; i<numDraw; i++)
- {
- int list=listdl[i];
-
- double rMid=sign[i]*getSectorRho(sector[list], rho[list], phi[list]);
- double zMid=z[list];
- // double dZ = 2. * dZMax * Math.min(charge[list] / (25. * 75000.), 0.9);
- double dRho=sigma[list];
-
- double sinAlpha=sinAlphaCopy;
- double cosAlpha=cosAlphaCopy;
-
- if(zMid>0.)
- cosAlpha*=-1.;
- if(rMid<0.)
- sinAlpha*=-1.;
-
- hv[0][i][0]=zMid-sinAlpha*dRho;
- hv[0][i][1]=zMid+sinAlpha*dRho;
- hv[1][i][0]=rMid+cosAlpha*dRho;
- hv[1][i][1]=rMid-cosAlpha*dRho;
- index[i]=list;
- }
- return new ACoord(hv, index, this, ACoord.POLYLINES);
- }
-
- protected int getDrawOrFill()
- {
- return AGraphics.DRAW;
- }
-
- protected ACoord getRZUser()
- {
- makeDrawList();
- int[] sign=new int[numDraw];
- double phiMid=Math.toRadians(parameterStore.get("RZ", "Phi").getD());
-
- for(int i=0; i<numDraw; i++)
- {
- double phiDiff=Math.abs(phi[listdl[i]]-phiMid);
-
- sign[i]=-1;
- if(phiDiff<Math.PI/2.||phiDiff>3*Math.PI/2.)
- sign[i]=1;
- }
- return getXZRZUser(sign);
- }
-
- protected ACoord getXZUser()
- {
- makeDrawList();
- cutMuonSector(sector);
- int[] sign=new int[numDraw];
- int sect=(int)Math.round(parameterStore.get("XZ", "Phi").getD() / 22.5);
-
- for(int i=0; i<numDraw; i++)
- {
- sign[i]=1;
- if(sector[listdl[i]]!=sect)
- sign[i]=-1;
- }
- return getXZRZUser(sign);
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/data/ACalorimeterData.java b/graphics/AtlantisJava/src/atlantis/data/ACalorimeterData.java
deleted file mode 100644
index e82e3d4a07e..00000000000
--- a/graphics/AtlantisJava/src/atlantis/data/ACalorimeterData.java
+++ /dev/null
@@ -1,2662 +0,0 @@
-package atlantis.data;
-
-import atlantis.event.AEvent;
-import java.awt.Color;
-import java.util.Vector;
-
-import atlantis.canvas.ACanvas;
-import atlantis.canvas.ADrawCalorimeterSummedEndcaps;
-import atlantis.canvas.ALegendWindow;
-import atlantis.canvas.AWindow;
-import atlantis.event.AData;
-import atlantis.geometry.ABarrelCalorimeterDetector;
-import atlantis.geometry.ACalorimeterDetector;
-import atlantis.geometry.AEndcapCalorimeterDetector;
-import atlantis.globals.AGlobals;
-import atlantis.graphics.ACoord;
-import atlantis.graphics.ADrawParameters;
-import atlantis.graphics.ADrawnGraphics2D;
-import atlantis.graphics.AGraphics;
-import atlantis.graphics.colormap.AColorMap;
-import atlantis.output.ALogInterface;
-import atlantis.output.AOutput;
-import atlantis.parameters.AParameter;
-import atlantis.parameters.AParameterUtilities;
-import atlantis.projection.AProjection;
-import atlantis.projection.AProjection2D;
-import atlantis.projection.AProjectionFR;
-import atlantis.projection.AProjectionFZ;
-import atlantis.projection.AProjectionRZ;
-import atlantis.projection.AProjectionVP;
-import atlantis.projection.AProjectionYX;
-import atlantis.utils.A4Vector;
-import atlantis.utils.AHashMap;
-import atlantis.utils.AIdHelper;
-import atlantis.utils.AMath;
-import atlantis.utils.APolygon;
-import atlantis.utils.AAtlantisException;
-import atlantis.utils.ALogger;
-
-/**
- * The superclass of all the ATLAS calorimeters. Contains also methods for
- * drawing groups of calorimeters together. Calorimeters can not be drawn
- * individually due to coupling of energy scale and the standard v-plot picture.
- * Each calorimeter also provides histograms.
- *
- * @author Eric Jansen
- */
-public abstract class ACalorimeterData extends AHitData implements AHistogramData
-{
- private static ALogger logger = ALogger.getLogger(ACalorimeterData.class);
-
- // Constants as defined in the configuration file.
- // Energy mode options.
- public static final int ENERGY_MODE_SUM_LIN = 0;
- public static final int ENERGY_MODE_MAX_LIN = 1;
- public static final int ENERGY_MODE_SUM_LOG = 2;
- public static final int ENERGY_MODE_MAX_LOG = 3;
- public static final int ENERGY_MODE_SUM_SQRT = 4;
- public static final int ENERGY_MODE_MAX_SQRT = 5;
-
- // Energy calibration options.
- public static final int ENERGY_CALIB_UNKNOWN = -1;
- public static final int ENERGY_CALIB_OVERALL = 0;
- public static final int ENERGY_CALIB_BY_TYPE = 1;
- public static final int ENERGY_CALIB_BY_CALO = 2;
-
- // Color functions.
- public static final int COLOR_FUNC_CONSTANT = 0;
- public static final int COLOR_FUNC_SUBDET = 1;
- public static final int COLOR_FUNC_CLUSTER = 2;
- public static final int COLOR_FUNC_SAMPLING = 3;
- public static final int COLOR_FUNC_ENERGY = 4;
- public static final int COLOR_FUNC_JET = 5;
- public static final int COLOR_FUNC_TYPE = 6;
- public static final int COLOR_FUNC_TIME = 7;
-
- private static final float SCALE_FACTOR_VPLOT = 20;
-
- public String CALORIMETER_NAME;
-
- // Properties needed for the histograms.
- protected double innerR;
- protected double outerR;
- protected double innerZ;
- protected double outerZ;
- protected double outerEta;
-
- protected double phiGranularity = 0.0;
- protected double etaGranularity = 0.0;
- protected AParameter histoScale;
-
- // This constant contains the highest phi or eta index for this data type.
- // Its value determines the amount of memory that is allocated for certain
- // data structures.
- protected short MAX_HIT_INDEX = 512;
- protected static final double NON_SCALING_FACTOR = 0.85;
-
- protected float[] phi;
- protected float[] eta;
- protected float[] dphi;
- protected float[] deta;
- protected float[] energy;
- protected float[] et;
- protected float[] etSum;
-
- // Et is more useful than pure Energy, so use Et to replace Energy
- // protected float[] energySum;
-
- protected byte[] side;
- protected short[] etaIndex;
- protected short[] phiIndex;
- protected int[] sampling;
- protected short[] detector;
-
- private int[][] cellTable;
-
- protected double minDensityECAL;
- protected double maxDensityECAL;
- protected double minDensityHCAL;
- protected double maxDensityHCAL;
-
- // following attributes occur at majority of calorimeter subdetectors
- // which inherit from here, but not at all of them (TILE is usually
- // the exception), checks are always done, so it's save ;
- // retrieving the data from XML is pre-checked so that not to spit out
- // unnecessary complaints
- protected int[] feedThrough = null;
- protected int[] channel = null;
- protected int[] slot = null;
- protected int[] BadCell = null;
-
-
- ACalorimeterData(AHashMap p, AEvent e)
- {
- super(p,e);
-
- CALORIMETER_NAME = getName();
-
- energy = p.getFloatArray("energy");
- et = new float[numData];
-
- phi = new float[numData];
- eta = new float[numData];
- deta = new float[numData];
- dphi = new float[numData];
-
- // energySum = new float[numData];
- etSum = new float[numData];
-
- side = new byte[numData];
- etaIndex = new short[numData];
- phiIndex = new short[numData];
- sampling = new int[numData];
- detector = new short[numData];
-
- histoScale = parameterStore.get(CALORIMETER_NAME, "HistoScale");
-
- // using AHashMap.getUnsureIntArray() does not complain if key is
- // not found - these parameters may not be present in all calorimetry
- // classes inherited from ACalorimeterData and using this call
- // also covers backwards compatibility, and is safe - null is returned
- // if key does not exist
- feedThrough = p.getUnsureIntArray("feedThrough");
- channel = p.getUnsureIntArray("channel");
- slot = p.getUnsureIntArray("slot");
- BadCell = p.getUnsureIntArray("BadCell");
-
- }
-
- /**
- * Get the name used for associating this datatype/collection. For the
- * calorimeter cells no storegate key is used.
- * @return
- */
- public String getFullName() {
- return getName();
- }
-
- /**
- * getADCCountsData()
- * reads in adcCounts array from XML data. This method is currently used
- * for LAr, FCAL, HEC and MBTS (TILE has two adcCounts arrays)
- * @param p AHashMap
- */
- protected int[][] getADCCountsData(AHashMap p)
- {
- int[][] adcCounts = null;
- int[] adc = (p.get("adcCounts") != null) ? p.getIntArray("adcCounts") : null;
- if(adc != null)
- {
- adcCounts = new int[numData][0];
- // multiple numbers are associated with each cell
- int multiple = adc.length / numData;
- int num = 0;
- for(int i = 0; i < numData; i++)
- {
- adcCounts[i] = new int[multiple];
- for (int j = 0; j < multiple; j++)
- {
- adcCounts[i][j] = adc[num]; // fill in array for each cell
- num++;
- }
- }
- } // if(adc != null)
-
- return adcCounts;
-
- } // getADCCountsData() -------------------------------------------------
-
-
-
- /**
- * Class used to merge ACoord[] objects.
- */
- public static class ACoordArray
- {
- private Vector<ACoord> v = new Vector<ACoord>();
-
- public void add(ACoord[] c)
- {
- for (int i = 0; i < c.length; i++)
- {
- v.addElement(c[i]);
- }
- }
-
- public ACoord[] getArray()
- {
- ACoord[] c = new ACoord[v.size()];
- for (int i = 0; i < v.size(); i++)
- {
- c[i] = (ACoord) v.elementAt(i);
- }
- return c;
- }
- }
-
-
-
- /**
- * Assigns the hits to a geometry object.
- */
- public void makeHitToGeometryMapping()
- {
- int numNotFound = 0;
-
- // In detector[] we store the hit-to-geometry object mapping.
- for (int i = 0; i < numData; i++)
- {
- detector[i] = (short) ACalorimeterDetector.getDetectorIndex(id[i]);
-
- if (detector[i] >= 0)
- {
- eta[i] = (float) ACalorimeterDetector.get(detector[i]).getEta(etaIndex[i], side[i]);
- deta[i] = (float) ACalorimeterDetector.get(detector[i]).getDeltaEta();
- phi[i] = (float) ACalorimeterDetector.get(detector[i]).getPhi(phiIndex[i]);
- dphi[i] = (float) ACalorimeterDetector.get(detector[i]).getDeltaPhi();
- }
- else if (!CALORIMETER_NAME.equals("FCAL"))
- {
- eta[i] = 0.0f;
- deta[i] = 0.0f;
- phi[i] = 0.0f;
- dphi[i] = 0.0f;
- numNotFound++;
- }
- }
- if (numNotFound > 0)
- {
- System.err.println(numNotFound + "/" + numData + " cells in " +
- CALORIMETER_NAME + " not mapped to a geometry object. These will not be drawn.");
- }
-
- // This depends on the number of geometry objects.
- cellTable = new int[2 * ACalorimeterDetector.count()][2 * MAX_HIT_INDEX];
- }
-
- /**
- * Returns the name of the calorimeter this data object belongs to.
- *
- * @return calorimeter name
- */
- public String getCalorimeterName()
- {
- return CALORIMETER_NAME;
- }
-
-
- /**
- * Method is called from APickInteraction and plots pulse shapes plots
- * for a cell when picked.
- * @param index int
- */
- public void plotPulseShapes(int index, boolean withcurve) {
- int[][] adc = getADCCounts(index);
- if (adc == null) {
- logger.warn("Pulse shape plot requested but no adc data available");
- return;
- }
-
- if (!withcurve) {
- APulseShapePlot.plotADCCounts(adc, getPulseTitleString(index), null);
- } else {
- double[][] ps = getPulseShape(index);
- if (ps == null) {
- logger.warn("No pulse shape information available, just plotting adc instead");
- APulseShapePlot.plotADCCounts(adc, getPulseTitleString(index), null);
- } else {
- APulseShapePlot.plotRealPulseShapes(adc, ps,
- getPulseStep(index), getPulseSubtitle(index), getPulseTitleString(index));
- }
- }
- }
-
- /**
- *
- */
- protected int[][] getADCCounts(int index) { return null; }
-
- protected double[][] getPulseShape(int index) { return null; }
-
- protected double getPulseStep(int index) { return 1.0; }
-
- protected String[] getPulseSubtitle(int index) { return null; }
-
- /**
- * Returns calorimeter type (ECAL or HCAL) of a certain hit.
- *
- * @param index int hit index
- * @return String calorimeter type
- */
- public abstract String getCalorimeterType(int index);
-
- /**
- * Returns the ACalorimeterDetector of a certain hit.
- *
- * @param index int hit index
- * @return ACalorimeterDetector
- */
- public ACalorimeterDetector getDetector(int index) {
- return ACalorimeterDetector.get(detector[index]);
- }
-
- /**
- * Recalculates eta from r and z in case the user wants to have their eta
- * with respect to the primary vertex instead of 0. The calculation is a
- * little different from the other calorimeter classes because this one
- * contains both barrel and endcap data.
- *
- * @param index int index of hit in data
- * @return double eta value
- */
- public double getEta(int index)
- {
- double r, z;
-
- if (!parameterStore.get("VP", "EtaVertex").getStatus() || detector[index] < 0)
- {
- return this.eta[index];
- }
-
- if (ACalorimeterDetector.get(detector[index]) instanceof ABarrelCalorimeterDetector)
- {
- r = ACalorimeterDetector.get(detector[index]).getR();
- z = r * AMath.tanLambda(eta[index]);
- }
- else
- {
- z = ACalorimeterDetector.get(detector[index]).getZ();
- r = z / AMath.tanLambda(eta[index]);
- }
-
- return AParameterUtilities.eta(z, r);
- }
-
- /**
- * Returns the calorimeter sampling (or layer) of a certain hit.
- *
- * @param index int hit index
- * @return int sampling/layer
- */
- public int getSampling(int index)
- {
- return sampling[index];
- }
-
- /**
- * Returns the side of the calorimeter of a certain hit.
- *
- * @param index int hit index
- * @return int side
- */
- public int getSide(int index)
- {
- return side[index];
- }
-
- /**
- * Returns the cell size in eta of a certain hit.
- *
- * @param index int hit index
- * @return double cell size in eta
- */
- public double getdEta(int index)
- {
- return deta[index];
- }
-
- /**
- * Returns the cell size in phi of a certain hit.
- *
- * @param index int hit index
- * @return double cell size in phi
- */
- public double getdPhi(int index)
- {
- return dphi[index];
- }
-
- /**
- * Returns the phi coordinate of a certain hit.
- *
- * @param index int hit index
- * @return double phi coordinate.
- */
- public double getPhi(int index)
- {
- return phi[index];
- }
-
- /**
- * Returns the transverse energy of a hit.
- *
- * @param index int hit index
- * @return float transverse energy
- */
- public float getET(int index)
- {
- return et[index];
- }
-
- /**
- * Returns the transverse energy of a list of hits.
- *
- * @param index int[] list of hit indices
- * @return float[] list of transverse energies
- */
- public float[] getET(int[] index)
- {
- float[] temp = new float[index.length];
-
- for (int i = 0; i < index.length; i++)
- {
- temp[i] = et[index[i]];
- }
- return temp;
- }
-
- /**
- * Returns the calorimeter sampling (or layer) of a list of hits.
- *
- * @param index int[] list of hit indices
- * @return int[] list of samplings
- */
- public int[] getSampling(int[] index)
- {
- int[] temp = new int[index.length];
-
- for (int i = 0; i < index.length; i++)
- {
- temp[i] = sampling[index[i]];
- }
- return temp;
- }
-
- /**
- * Returns the energy of a hit.
- *
- * @param index int hit index
- * @return float energy
- */
- public float getEnergy(int index)
- {
- return energy[index];
- }
-
- /**
- * Returns the depositied energy of a list of hits.
- *
- * @param index int[] list of hit indices
- * @return float[] list of energies
- */
- public float[] getEnergy(int[] index)
- {
- float[] temp = new float[index.length];
-
- for (int i = 0; i < index.length; i++)
- {
- temp[i] = energy[index[i]];
- }
- return temp;
- }
-
- public static double getNonScalingFactor()
- {
- return NON_SCALING_FACTOR;
- }
-
- /**
- * Returns the lowest density for the cell type of the specified hit.
- *
- * @param index int hit index
- * @return double minimum density
- */
- protected double getMinDensity(int index)
- {
- return getMinDensity(getCalorimeterType(index));
- }
-
- /**
- * Returns the lowest densityfor the specified calorimeter type.
- *
- * @param type String either "ECAL", "HCAL" or "ALL"
- * @return double minimum density
- */
- protected double getMinDensity(String type)
- {
- if (type.equals("ECAL"))
- {
- return minDensityECAL;
- }
- else if (type.equals("HCAL"))
- {
- return minDensityHCAL;
- }
- else if (type.equals("ALL"))
- {
- // Return the lowest non-zero value.
- if (minDensityECAL == 0.0 || minDensityHCAL == 0.0)
- {
- return Math.max(minDensityECAL, minDensityHCAL);
- }
- else
- {
- return Math.min(minDensityECAL, minDensityHCAL);
- }
- }
- else
- {
- return 0.0;
- }
- }
-
- /**
- * Returns the highest density for the cell type of the specified hit.
- *
- * @param index int hit index
- * @return double maximum density
- */
- protected double getMaxDensity(int index)
- {
- return getMaxDensity(getCalorimeterType(index));
- }
-
- /**
- * Returns the highest densityfor the specified calorimeter type.
- *
- * @param type String either "ECAL", "HCAL" or "ALL"
- * @return double maximum density
- */
- protected double getMaxDensity(String type)
- {
- if (type.equals("ECAL"))
- {
- return maxDensityECAL;
- }
- else if (type.equals("HCAL"))
- {
- return maxDensityHCAL;
- }
- else if (type.equals("ALL"))
- {
- return Math.max(maxDensityECAL, maxDensityHCAL);
- }
- else
- {
- return 0.0;
- }
- }
-
- /**
- * Sets the minimum density for the specified calorimeter type.
- *
- * @param type String either "ECAL", "HCAL" or "ALL"
- * @param density double minimum density to set
- */
- protected void setMinDensity(String type, double density)
- {
- if (type.equals("ECAL"))
- {
- minDensityECAL = density;
- }
- else if (type.equals("HCAL"))
- {
- minDensityHCAL = density;
- }
- else if (type.equals("ALL"))
- {
- minDensityECAL = density;
- minDensityHCAL = density;
- }
- }
-
- /**
- * Sets the maximum density for the specified calorimeter type.
- *
- * @param type String either "ECAL", "HCAL" or "ALL"
- * @param density double maximum density to set
- */
- protected void setMaxDensity(String type, double density)
- {
- if (type.equals("ECAL"))
- {
- maxDensityECAL = density;
- }
- else if (type.equals("HCAL"))
- {
- maxDensityHCAL = density;
- }
- else if (type.equals("ALL"))
- {
- maxDensityECAL = density;
- maxDensityHCAL = density;
- }
-
- parameterStore.get(CALORIMETER_NAME, "Area/Energy").setD(1. / Math.max(maxDensityECAL, maxDensityHCAL));
- }
-
- /**
- * Returns the data that needs to be drawn in the specificied projection.
- *
- * @param projection AProjection projection
- * @return ACoord data to be drawn
- */
- protected ACoord getUserNoTransform(AProjection projection)
- {
- if (CALORIMETER_NAME.equals("FCAL") || CALORIMETER_NAME.equals("MBTS"))
- {
- // FCAL and MBTS data are not linked to the geometry objects, so use the old method.
- return super.getUserNoTransform(projection);
- }
- else
- {
- // For all the other types we can simply get the geometry from the
- // geometry objects.
- makeDrawList();
- filterDrawList(projection);
- double[][][] hv = new double[2][numDraw][0];
- int[] index = new int[numDraw];
-
- for (int i = 0; i < numDraw; i++)
- {
- int j = listdl[i];
- if (detector[j] >= 0)
- {
- ACoord coord = ACalorimeterDetector.get(detector[j]).getCell(projection, etaIndex[j], phiIndex[j], side[j]);
- if (coord.hv[0].length > 0)
- {
- hv[0][i] = coord.hv[0][0];
- hv[1][i] = coord.hv[1][0];
- }
- }
- else
- {
- // Alternative setups compatibility mode based on eta, deta,
- // r or z, dr or dz, phi, dphi from event file could be
- // implemented here.
- }
- index[i] = j;
- }
-
- // Apply the wrap arounds for phi in certain projections.
- if (projection instanceof AProjectionVP)
- {
- return new ACoord(hv, index, this).includePhiWrapAround("VP");
- }
- else if (projection instanceof AProjectionFR)
- {
- return new ACoord(hv, index, this).includePhiWrapAround("FR");
- }
- else if (projection instanceof AProjectionFZ)
- {
- return new ACoord(hv, index, this).includePhiWrapAround("FZ");
- }
- else
- {
- return new ACoord(hv, index, this);
- }
- }
- }
-
- /**
- * Returns the data points for the "standard" mode v-plot.
- *
- * @return ACoord v-plot points
- */
- public ACoord getVPPoints()
- {
- makeDrawList();
- double[][] hv = new double[2][numDraw];
- int[] index = new int[numDraw];
- for (int i = 0; i < numDraw; i++)
- {
- int j = listdl[i];
- hv[0][i] = getEta(j);
- hv[1][i] = Math.toDegrees(phi[j]);
- index[i] = j;
- }
- return new ACoord(hv, index, this, ACoord.SYMBOLS).includePhiWrapAround("VP");
- }
-
- /**
- * Cleans up the drawList. From all cells that are drawn at a certain place
- * only the one that has the highest deposited transverse energy will remain.
- * It also sums the transverse energy of the cells it removes. This is stored
- * in etSum[] at the index of the "most energetic" cell.
- *
- * @param projection AProjection projection to be drawn
- */
- protected void filterDrawList(AProjection projection)
- {
- // In the v-plot every cell is drawn, unless we're in one of the special
- // modes.
- if (projection instanceof AProjectionVP)
- {
- switch (parameterStore.get("VP", "Mode").getI())
- {
- case AProjectionVP.MODE_STANDARD:
- // Everything is drawn in the standard mode v-plot.
- return;
- case AProjectionVP.MODE_ECAL_LAYER_0:
- case AProjectionVP.MODE_ECAL_LAYER_1:
- case AProjectionVP.MODE_ECAL_LAYER_2:
- case AProjectionVP.MODE_ECAL_LAYER_3:
- if (!CALORIMETER_NAME.equals("LAr"))
- {
- // Don't draw HCAL in ECAL mode.
- numDraw = 0;
- }
- return;
- case AProjectionVP.MODE_HCAL_LAYER_0:
- case AProjectionVP.MODE_HCAL_LAYER_1:
- case AProjectionVP.MODE_HCAL_LAYER_2:
- case AProjectionVP.MODE_HCAL_LAYER_3:
- if (!CALORIMETER_NAME.equals("TILE") && !CALORIMETER_NAME.equals("HEC"))
- {
- // Don't draw ECAL in HCAL mode.
- numDraw = 0;
- }
- return;
- default:
- numDraw = 0;
- return;
- }
- }
-
- // The phi-z projection has special modes as well.
- if (projection instanceof AProjectionFZ)
- {
- if (parameterStore.get(projection.getName(), "Mode").getI() != AProjectionYX.MODE_STANDARD)
- {
- numDraw = 0;
- return;
- }
- }
- // Also the y-x and phi-rho projections have special modes (they share the same mode list).
- int mode = parameterStore.get("YX", "Mode").getI();
- if (projection instanceof AProjectionYX || projection instanceof AProjectionFR)
- {
- if (mode != AProjectionYX.MODE_STANDARD &&
- (mode < AProjectionYX.MODE_LAR_ENDCAP_PRESAMPLER || mode > AProjectionYX.MODE_HEC_SUMMED))
- {
- numDraw = 0;
- return;
- }
- else if (mode >= AProjectionYX.MODE_LAR_ENDCAP_PRESAMPLER && mode <= AProjectionYX.MODE_HEC_SUMMED)
- {
- if ((mode >= AProjectionYX.MODE_HEC_1 && mode <= AProjectionYX.MODE_HEC_4 && !CALORIMETER_NAME.equals("HEC")) ||
- (mode < AProjectionYX.MODE_HEC_1 && !CALORIMETER_NAME.equals("LAr")) ||
- (mode == AProjectionYX.MODE_HEC_SUMMED && !CALORIMETER_NAME.equals("HEC")) ||
- (mode == AProjectionYX.MODE_LAR_ENDCAP_SUMMED && !CALORIMETER_NAME.equals("LAr")))
- {
- numDraw = 0;
- return;
- }
- }
- else if(mode == AProjectionYX.MODE_MBTS && !CALORIMETER_NAME.equals("MBTS"))
- {
- numDraw = 0;
- return;
- }
- }
-
- float[][] etTable = new float[2 * ACalorimeterDetector.count()][2 * MAX_HIT_INDEX];
- for (int i = 0; i < 2 * ACalorimeterDetector.count(); i++)
- {
- for (int j = 0; j < 2 * MAX_HIT_INDEX; j++)
- {
- cellTable[i][j] = -1;
- etTable[i][j] = 0.0f;
- }
- }
-
- for (int i = 0; i < numDraw; i++)
- {
- int detIndex = getDetectorIndex(listdl[i]);
- int hitIndex = getHitIndex(listdl[i], projection);
-
- if (detIndex >= 0 && hitIndex >= 0)
- {
- etTable[detIndex][hitIndex] += et[listdl[i]];
- if (cellTable[detIndex][hitIndex] < 0 || et[cellTable[detIndex][hitIndex]] < et[listdl[i]])
- cellTable[detIndex][hitIndex] = listdl[i];
- }
- }
-
- numDraw = 0;
- for (int i = 0; i < 2 * ACalorimeterDetector.count(); i++)
- {
- for (int j = 0; j < 2 * MAX_HIT_INDEX; j++)
- {
- if (cellTable[i][j] > 0)
- {
- listdl[numDraw] = cellTable[i][j];
- etSum[listdl[numDraw]] = etTable[i][j];
- numDraw++;
- }
- }
- }
- }
-
- /**
- * This function maps a hit to an index. This index is such that two hits
- * get the same index when they are in the same detector and on the same
- * side.
- *
- * @param index int number of the hit in the current dataset
- * @return int detector index
- */
- protected int getDetectorIndex(int index)
- {
- if (detector[index] >= 0)
- {
- if (side[index] > 0)
- {
- return ACalorimeterDetector.count() + detector[index];
- }
- else
- {
- return detector[index];
- }
- }
- return -1;
- }
-
- /**
- * This function maps a hit to an index. This index is such that two hits in
- * the same detector will receive the same index if they will be drawn in
- * the same place.
- *
- * @param index int number of the hit in the current dataset
- * @param projection AProjection projection the hit index should be
- * calculated for
- * @return int hit index
- */
- protected int getHitIndex(int index, AProjection projection)
- {
- if (detector[index] >= 0)
- {
- if (projection instanceof AProjectionYX)
- {
- return phiIndex[index];
- }
- else if (projection instanceof AProjectionRZ)
- {
- if (ACalorimeterDetector.get(detector[index]).getRSign(phiIndex[index]) > 0)
- {
- return MAX_HIT_INDEX + etaIndex[index];
- }
- else
- {
- return etaIndex[index];
- }
- }
- else if (projection instanceof AProjectionFR)
- {
- return phiIndex[index];
- }
- else if (projection instanceof AProjectionFZ)
- {
- return phiIndex[index];
- }
- }
- return -1;
- }
-
- /**
- * Returns the histograms for this projection.
- *
- * @param projection AProjection2D current projection
- * @return ACoord[] polygons representing histograms
- */
- protected ACoord[] getUserHistograms(AProjection2D projection)
- {
- return ACoord.NO_HISTOGRAMS;
- }
-
- /**
- * Returns the histograms in the YX projection.
- *
- * @return ACoord[] histograms
- */
- public ACoord[] getYXHistograms()
- {
- AHistogram hist = new AHistogram(0., 2. * Math.PI, phiGranularity, histoScale.getD(), this);
- int mode = parameterStore.get("YX", "Mode").getI();
- double newInnerR = innerR;
- boolean hasAddedToHistogram = false;
- for (int i = 0; i < numDraw; i++)
- {
- int j = listdl[i];
- if (detector[j] >= 0)
- {
- if ((mode == AProjectionYX.MODE_STANDARD && ACalorimeterDetector.get(detector[j]) instanceof ABarrelCalorimeterDetector) ||
- (mode != AProjectionYX.MODE_STANDARD && ACalorimeterDetector.get(detector[j]) instanceof AEndcapCalorimeterDetector))
- {
- String name = ACalorimeterDetector.get(detector[j]).getName();
- if (mode == AProjectionYX.MODE_STANDARD || (mode == AProjectionYX.MODE_LAR_ENDCAP_PRESAMPLER && (name.equals("LAr Endcap Presampler")||name.equals("LAr_EC_Presampler"))) ||
- (name.equals("LAr Outer Endcap") && getSampling(j) == mode - AProjectionYX.MODE_LAR_ENDCAP_PRESAMPLER) ||
- (name.equals("LAr Inner Endcap") && getSampling(j) == mode - AProjectionYX.MODE_LAR_ENDCAP_PRESAMPLER - 1) ||
- (name.equals("HEC") && getSampling(j) == mode - AProjectionYX.MODE_HEC_1) ||
- (mode == AProjectionYX.MODE_LAR_ENDCAP_SUMMED && name.indexOf("LAr") >= 0) || (mode == AProjectionYX.MODE_HEC_SUMMED && name.equals("HEC")))
- {
- hasAddedToHistogram = true;
- double phiMin = ACalorimeterDetector.get(detector[j]).getPhiMin(phiIndex[j]);
- double phiMax = ACalorimeterDetector.get(detector[j]).getPhiMax(phiIndex[j]);
-
- if (phiMin < -1e-9 && phiMax > 1e-9)
- {
- hist.fill(phiMin + 2. * Math.PI, 2. * Math.PI, etSum[j] / 2.);
- hist.fill(0., phiMax, etSum[j] / 2.);
- }
- else
- {
- hist.fill(phiMin, phiMax, etSum[j]);
- }
- if (mode != AProjectionYX.MODE_STANDARD)
- {
- if (name.equals("HEC"))
- {
- if (mode != AProjectionYX.MODE_HEC_SUMMED)
- {
- //can use the get RMin accurately for the HEC
- newInnerR = ACalorimeterDetector.get(detector[j]).getRMin();
- }
- else if (ACalorimeterDetector.get(detector[j]).getRMin() < newInnerR)
- {
- //only want to assign HEC ALL minimum if is smaller
- newInnerR = ACalorimeterDetector.get(detector[j]).getRMin();
- }
- }
- else
- {
- //calculate RMin as not accurate in geometry file
- double etaMax = ACalorimeterDetector.get(detector[j]).getEtaMax();
- double zMin = ACalorimeterDetector.get(detector[j]).getZMin();
- double temp = zMin / Math.sinh(etaMax);
- //save calculated if smallest
- if (temp < newInnerR)
- newInnerR = temp;
- }
- }
- }
- }
- }
- }
- if (hasAddedToHistogram)
- return new ACoord[] { hist.getYXUser(newInnerR) };
- else
- return ACoord.NO_HISTOGRAMS;
- }
-
- /**
- * Returns the histograms in the phi-rho projection.
- *
- * @return ACoord[] histograms
- */
- public ACoord[] getFRHistograms()
- {
- AHistogram hist = new AHistogram(0., 2. * Math.PI, phiGranularity, histoScale.getD(), this);
-
- for (int i = 0; i < numDraw; i++)
- {
- int j = listdl[i];
- if (detector[j] >= 0)
- {
- if (ACalorimeterDetector.get(detector[j]) instanceof ABarrelCalorimeterDetector)
- {
- double phiMin = ACalorimeterDetector.get(detector[j]).getPhiMin(phiIndex[j]);
- double phiMax = ACalorimeterDetector.get(detector[j]).getPhiMax(phiIndex[j]);
-
- if (phiMin < -1e-9 && phiMax > 1e-9)
- {
- hist.fill(phiMin + 2. * Math.PI, 2. * Math.PI, etSum[j] / 2.);
- hist.fill(0., phiMax, etSum[j] / 2.);
- }
- else
- {
- hist.fill(phiMin, phiMax, etSum[j]);
- }
- }
- }
- }
- return new ACoord[] { hist.getFRUser(innerR).includePhiWrapAround("FR") };
- }
-
- /**
- * Returns the histograms in the RZ projection.
- *
- * @return ACoord[] histograms
- */
- public ACoord[] getRZHistograms()
- {
- AHistogram histUp = new AHistogram(-outerEta, outerEta, etaGranularity, histoScale.getD(), this);
- AHistogram histDown = new AHistogram(-outerEta, outerEta, etaGranularity, histoScale.getD(), this);
-
- for (int i = 0; i < numDraw; i++)
- {
- int j = listdl[i];
- if (detector[j] >= 0)
- {
- int sign = ACalorimeterDetector.get(detector[j]).getRSign(phiIndex[j]);
- double etaMin = ACalorimeterDetector.get(detector[j]).getEtaMin(etaIndex[j], side[j]);
- double etaMax = ACalorimeterDetector.get(detector[j]).getEtaMax(etaIndex[j], side[j]);
-
- if (sign > 0)
- {
- histUp.fill(etaMin, etaMax, etSum[j]);
- }
- else
- {
- histDown.fill(etaMin, etaMax, etSum[j]);
- }
- }
- }
-
- ACoordArray c = new ACoordArray();
- c.add(histUp.getRZUser(outerZ, outerR, AHistogram.UP));
- c.add(histDown.getRZUser(outerZ, outerR, AHistogram.DOWN));
- return c.getArray();
- }
-
- /**
- * Returns the histograms in the phi-z projection.
- *
- * @return ACoord[] histograms
- */
- public ACoord[] getFZHistograms()
- {
- AHistogram hist;
- AHistogram histLeft = new AHistogram(0., 2. * Math.PI, phiGranularity, histoScale.getD(), this);
- AHistogram histRight = new AHistogram(0., 2. * Math.PI, phiGranularity, histoScale.getD(), this);
-
- for (int i = 0; i < numDraw; i++)
- {
- int j = listdl[i];
- if (detector[j] >= 0)
- {
- if (ACalorimeterDetector.get(detector[j]) instanceof AEndcapCalorimeterDetector)
- {
- double phiMin = ACalorimeterDetector.get(detector[j]).getPhiMin(phiIndex[j]);
- double phiMax = ACalorimeterDetector.get(detector[j]).getPhiMax(phiIndex[j]);
-
- if (side[j] > 0)
- {
- hist = histRight;
- }
- else
- {
- hist = histLeft;
- }
-
- if (phiMin < -1e-9 && phiMax > 1e-9)
- {
- hist.fill(phiMin + 2. * Math.PI, 2. * Math.PI, etSum[j] / 2.);
- hist.fill(0., phiMax, etSum[j] / 2.);
- }
- else
- {
- hist.fill(phiMin, phiMax, etSum[j]);
- }
- }
- }
- }
-
- return new ACoord[] { histLeft.getFZUser(innerZ, AHistogram.LEFT).includePhiWrapAround("FZ"),
- histRight.getFZUser(innerZ, AHistogram.RIGHT).includePhiWrapAround("FZ") };
- }
-
- /**
- * Returns the histograms in the x'-z projection.
- *
- * @return ACoord[] histograms
- */
- public ACoord[] getXZHistograms()
- {
- return ACoord.NO_HISTOGRAMS;
- }
-
- /**
- * Returns the histograms in the y'-z projection.
- *
- * @return ACoord[] histograms
- */
- public ACoord[] getYZHistograms()
- {
- return ACoord.NO_HISTOGRAMS;
- }
-
- /**
- * Returns the histograms in the eta-phi projection.
- *
- * @return ACoord[] histograms
- */
- public ACoord[] getVPHistograms()
- {
- return ACoord.NO_HISTOGRAMS;
- }
-
- /**
- * Sets the type of the hits (associated, unassociated).
- */
- protected void setType()
- {
- int[][] cluster = event.getAssociationManager().get(getName(), "Cluster");
- for (int i = 0; i < numData; i++)
- {
- if (cluster != null && cluster[i] != null)
- {
- type[i] = 1;
- }
- else
- {
- type[i] = 0;
- }
- }
- }
-
- /**
- * Determines if the cells need to be scaled by energy or not. This will be
- * true for most cases, but not if the user has selected the color by energy
- * color function.
- *
- * @return boolean true for energy scaling, false for constant cell size
- */
- protected boolean energyScaling()
- {
- return parameterStore.get(PARAMETER_GROUP, "ColorFunction").getI() != COLOR_FUNC_ENERGY;
- }
-
- /**
- * Determines the color for each hit according to the color function set by
- * the user.
- *
- * @return int number of coloring options?
- */
- protected int internalColor()
- {
- int colorFunction = parameterStore.get(PARAMETER_GROUP, "ColorFunction").getI();
-
- switch (colorFunction)
- {
- case COLOR_FUNC_CONSTANT:
- colorByConstant();
- break;
-
- case COLOR_FUNC_SUBDET:
- colorBy(sub);
- break;
-
- case COLOR_FUNC_CLUSTER:
- colorBy(getClusters());
- break;
-
- case COLOR_FUNC_SAMPLING:
- colorBy(sampling);
- break;
-
- case COLOR_FUNC_ENERGY:
- colorByEnergy();
- break;
-
- case COLOR_FUNC_JET:
- if(parameterStore.get("Jet", "ColorFunction").getI()!=1)
- {
- parameterStore.get("Jet", "ColorFunction").setI(1);
- String msg = "Coloring Calo by jet so ";
- msg += "ATLAS->Jet->Color Function changed to color by index";
- AOutput.append("\n" + msg + "\n", ALogInterface.WARNING);
- }
- colorBy(getJets());
- break;
-
- case COLOR_FUNC_TYPE:
- colorByType();
- break;
-
- case COLOR_FUNC_TIME:
- colorByTime();
- break;
- }
-
- return colorFunction + 8;
- }
-
- /**
- * Colors cells by energy.
- */
- protected void colorByEnergy()
- {
- double min = 0.0, max = 0.0;
- boolean first = true;
- int numColors = 17;
- float[] en = null;
-
- switch (parameterStore.get(CALORIMETER_NAME, "EnergyMode").getI())
- {
- case ENERGY_MODE_SUM_LIN:
- case ENERGY_MODE_SUM_LOG:
- case ENERGY_MODE_SUM_SQRT:
- en = etSum;
- break;
-
- case ENERGY_MODE_MAX_LIN:
- case ENERGY_MODE_MAX_LOG:
- case ENERGY_MODE_MAX_SQRT:
- en = et;
- break;
- }
-
- for (int i = 0; i < numDraw; i++)
- {
- int j = listdl[i];
- if (first)
- {
- min = en[j];
- max = en[j];
- first = false;
- }
-
- if (en[j] > max)
- max = en[j];
- if (en[j] < min)
- min = en[j];
- }
-
- for (int i = 0; i < numDraw; i++)
- {
- int j = listdl[i];
- if (AColorMap.getColorMap() == AColorMap.COLOR_MAP_BW)
- {
- // Black and white colormap.
- color[j] = AColorMap.BK;
- }
- else
- {
- int colorIndex = 0;
-
- // We have numColors colors available.
- switch (parameterStore.get(CALORIMETER_NAME, "EnergyMode").getI())
- {
- case ENERGY_MODE_MAX_LIN:
- case ENERGY_MODE_SUM_LIN:
- colorIndex = (int) (numColors * (en[j] - min) / (max - min));
- break;
- case ENERGY_MODE_MAX_LOG:
- case ENERGY_MODE_SUM_LOG:
- colorIndex = (int) (numColors * (Math.log(en[j]) - Math.log(min)) / (Math.log(max) - Math.log(min)));
- break;
- case ENERGY_MODE_MAX_SQRT:
- case ENERGY_MODE_SUM_SQRT:
- colorIndex = (int) (numColors * Math.sqrt((en[j] - min) / (max - min)));
- break;
- }
-
- if (colorIndex >= numColors)
- colorIndex = (byte) (numColors - 1);
-
- color[j] = (byte) colorIndex;
- }
- }
- }
-
- /**
- * Colors cells by type (ECAL/HCAL).
- */
- protected void colorByType()
- {
-
- for (int i = 0; i < numDraw; i++)
- {
- int j = listdl[i];
- String cellType = getCalorimeterType(j);
- //Use detector color but add on 12 to get different shade of same color
- color[j] = (byte) (parameterStore.get("Det", cellType + "Fill").getI() + 12);
- }
- }
-
- //Gets the measured time for a calorimeter cell.
- //It's 0 by default, but can and should be overriden by subclasses.
- protected double getTime(int hit)
- {
- return 0.0;
- }
-
- //Color cells by their measured time, on a blue-red scale.
- //Unmeasured cells are grey.
- protected void colorByTime()
- {
- double min = 0.0, max = 0.0;
- boolean first = true;
- for (int i = 0; i < numDraw; i++)
- {
- int j = listdl[i];
- double t=getTime(j);
- if (t==0.0) continue;//ignore unmeasured hits
- if (first)
- {
- min = t; max = t;
- first = false;
- }
-
- if (t > max) max = t;
- if (t < min) min = t;
- }
-
- int numColors = 127;
- double scale = (max - min);
- if (scale<5) scale=5;//smallest scale is 5 ns
- for (int i = 0; i < numDraw; i++)
- {
- int j = listdl[i];
- double t = getTime(j);
-
- int colorIndex = (int) (numColors * (t-min) / scale);
- if (colorIndex >= numColors) {
- colorIndex = numColors;//red
- }
- if (colorIndex < 1) {
- colorIndex = 1;//blue
- }
-
- if (t==0.0) colorIndex=0;//gets grey color
- color[j] = (byte) colorIndex;
-
- }
- }
-
- /**
- * Applies cuts to the data.
- */
- protected void applyCuts()
- {
- cutIndex();
- cut("CutsCalo", "Layer", "Layer", sampling);
- cut("CutsCalo", "CellQuality", "CellQuality", BadCell);
- cutPhi(phi, dphi);
- cutEtaDEta(eta, deta);
- }
-
- /**
- * Performs the local density calibration. This function determines the
- * highest and lowest energy density values ans stores them.
- *
- * @param index int[] hits to be used in calibration
- * @param area double[] cell areas
- */
- public void calibrateLocalDensity(int[] index, double[] area)
- {
- float[] en = null;
- double density;
- boolean firstECAL = true;
- boolean firstHCAL = true;
-
- AParameter par = parameterStore.get(CALORIMETER_NAME, "Area/Energy");
- if (par.getStatus() && par.getD() > 0)
- {
- minDensityECAL = 0.0;
- minDensityHCAL = 0.0;
- maxDensityECAL = 1. / par.getD();
- maxDensityHCAL = 1. / par.getD();
- }
- else
- {
- // Otherwise we need to do calculate it ourselves.
- switch (parameterStore.get(CALORIMETER_NAME, "EnergyMode").getI())
- {
- case ENERGY_MODE_SUM_LIN:
- case ENERGY_MODE_SUM_LOG:
- case ENERGY_MODE_SUM_SQRT:
- en = etSum;
- break;
-
- case ENERGY_MODE_MAX_LIN:
- case ENERGY_MODE_MAX_LOG:
- case ENERGY_MODE_MAX_SQRT:
- en = et;
- break;
- }
-
- // The default for an empty list of cells or only zero area cells is
- // 0.0.
- minDensityECAL = 0.0;
- maxDensityECAL = 0.0;
- minDensityHCAL = 0.0;
- maxDensityHCAL = 0.0;
-
- // Calculate density and determine the highest and lowest values.
- for (int i = 0; i < index.length; i++)
- {
- if (area[i] > 0)
- {
- density = (en[index[i]] / area[i]);
-
- if (density > 0)
- {
- if (getCalorimeterType(index[i]).equals("ECAL"))
- {
- if (firstECAL)
- {
- // First cell with a sensible density, take this
- // as initial value.
- minDensityECAL = density;
- maxDensityECAL = density;
- firstECAL = false;
- }
-
- if (density < minDensityECAL)
- minDensityECAL = density;
- if (density > maxDensityECAL)
- maxDensityECAL = density;
-
- }
- else if (getCalorimeterType(index[i]).equals("HCAL"))
- {
- if (firstHCAL)
- {
- // First cell with a sensible density, take this
- // as initial value.
- minDensityHCAL = density;
- maxDensityHCAL = density;
- firstHCAL = false;
- }
-
- if (density < minDensityHCAL)
- minDensityHCAL = density;
- if (density > maxDensityHCAL)
- maxDensityHCAL = density;
- }
- }
- }
- }
- }
- }
-
- /**
- *
- */
- public double[] getScaleFactors(int[] dl, double[] area) {
- double[] factors = new double[area.length];
-
- float[] en = null;
- int energyMode = parameterStore.get(CALORIMETER_NAME, "EnergyMode").getI();
-
- switch (energyMode)
- {
- case ENERGY_MODE_SUM_LIN:
- case ENERGY_MODE_SUM_LOG:
- case ENERGY_MODE_SUM_SQRT:
- en = etSum;
- break;
-
- case ENERGY_MODE_MAX_LIN:
- case ENERGY_MODE_MAX_LOG:
- case ENERGY_MODE_MAX_SQRT:
- en = et;
- break;
- }
-
- for (int i = 0; i < area.length; i++)
- {
- factors[i] = 1.0f;
-
- if (area[i] == 0)
- continue;
-
- if (energyScaling())
- {
- // The user has (implicitly) selected energy scaling.
- double density = en[dl[i]] / area[i];
- double minDensity = getMinDensity(dl[i]);
- double maxDensity = getMaxDensity(dl[i]);
-
- switch (energyMode)
- {
- case ENERGY_MODE_MAX_LIN:
- case ENERGY_MODE_SUM_LIN:
- factors[i] = Math.sqrt(density / maxDensity);
- break;
-
- case ENERGY_MODE_MAX_LOG:
- case ENERGY_MODE_SUM_LOG:
- double magnitude = Math.floor(Math.log10(Math.sqrt(maxDensity / minDensity)) + 1.0);
- factors[i] = (Math.log10(Math.sqrt(density / maxDensity)) + magnitude) / magnitude;
- break;
-
- case ENERGY_MODE_MAX_SQRT:
- case ENERGY_MODE_SUM_SQRT:
- factors[i] = Math.sqrt(Math.sqrt(density / maxDensity));
- break;
-
- default:
- factors[i] = NON_SCALING_FACTOR;
- }
- }
- else
- {
- // No energy scaling, scale all cells by the same factor.
- factors[i] = NON_SCALING_FACTOR;
- }
-
- if (factors[i] > 1.0) {
- factors[i] = 1.0;
- }
- }
-
- return factors;
- }
-
- /**
- * Scales a series of polygons according to the user settings.
- *
- * @param coord ACoord polygons to be scaled
- * @param area double[] surface area of these polygons
- * @return ACoord scaled polygons
- */
- protected ACoord scalePolygons(ACoord coord, double[] area)
- {
- double[] factors = getScaleFactors(coord.index, area);
-
- for (int i = 0; i < area.length; i++)
- {
- if (area[i] == 0)
- continue;
-
- APolygon.scale(coord.hv[0][i], coord.hv[1][i], factors[i]);
- }
- return coord;
- }
-
- private String getCellString(int index, String idstr) {
- StringBuffer msg = new StringBuffer();
- msg.append(CALORIMETER_NAME + " cell");
- msg.append(" (id: " + idstr + " index: " + index + ")");
- return msg.toString();
- }
-
- private String getHitString(int index) {
- StringBuffer msg = new StringBuffer();
-
- msg.append("\n E Max = ");
- msg.append(String.format("%.2f",energy[index]));
- msg.append(" GeV\n ET Max = ");
- msg.append(String.format("%.2f",et[index]));
- msg.append(" GeV\n ET Sum = ");
- msg.append(String.format("%.2f",etSum[index]));
- msg.append(" GeV\n ");
- msg.append(AMath.ETA);
- msg.append(" = ");
- msg.append(String.format("%.4f",eta[index]));
- msg.append(" ");
- msg.append(AMath.PLUSMINUS);
- msg.append(" ");
- // deta is step (i.e. size of a cell), with +- we want to see half of it
- msg.append(String.format("%.3f",deta[index] / 2.0));
- msg.append("\n ");
- msg.append(AMath.PHI);
- msg.append(" = ");
- msg.append(String.format("%.1f",Math.toDegrees(phi[index])));
- msg.append(" " + AMath.PLUSMINUS + " ");
- // dphi is step (i.e. size of a cell), with +- we want to see half of it
- msg.append(String.format("%.1f",Math.toDegrees(dphi[index] / 2.0)));
- msg.append(AMath.DEGREES);
- msg.append(" (" + String.format("%.1f",phi[index]) + " ");
- msg.append(AMath.PLUSMINUS + " " + String.format("%.1f",dphi[index] / 2.0) + " rad)");
-
- if(feedThrough != null && slot != null && channel != null)
- {
- String s = "\n feed through/slot/channel = " +
- feedThrough[index] + "/" + slot[index] + "/" +
- channel[index];
- msg.append(s);
- }
- if(BadCell != null){
- if(BadCell[index] == 0)
- msg.append("\n Cell is good");
- if(BadCell[index] == 1)
- msg.append("\n Cell is bad");
- if(BadCell[index] == -1)
- msg.append("\n Cell is below 50 MeV");
- }
-
- return msg.toString();
- }
-
- /**
- * Getting title string for pulse shape windows
- *
- * Relies on decodedId[1] being some useful high level string describing
- * the calorimeter part. This isn't the case for ATILEData where this function
- * is overridden to do something different.
- *
- * Maybe this is a slightly unreasonable plan... but then the first thing
- * you decode out of the id should usually be the "biggest" sort of division...
- * - Adam
- */
- protected String getPulseTitleString(int index) {
-
- String[] decodedId = AIdHelper.getFullIdentifier(id[index]);
-
- String title = null;
-
- if (feedThrough == null || slot == null || channel == null) {
- // Old style title
- logger.warn("Calo FT/slot/channel info not available, using old style title");
- title = decodedId[1] + " cell: " + decodedId[0];
- } else {
- // New title as requested by Andre N. Aug 09
- title = decodedId[1] + " cell: " +
- this.feedThrough[index] + "/" + this.slot[index] +
- "/" + this.channel[index];
- }
-
- return title;
- }
-
- // Some calo stuff wants to decode the id it's own way...
- public String getHitInfoNoDecode(int index) {
-
- String[] decodedId = AIdHelper.getFullIdentifier(id[index]);
- return getCellString(index, decodedId[0]) + getHitString(index);
-
- }
-
- /**
- * Returns information about a certain hit for display in the information
- * box.
- *
- * @param index int hit index
- * @return String hit information
- */
- public String getHitInfo(int index)
- {
- int simpleOutput = AGlobals.instance().getSimpleOutput();
- if(simpleOutput>0){
- String output = getNameScreenName()+" index: " + index;
- if(simpleOutput==1 || simpleOutput==3)
- output+= "\n ET="+String.format("%.3f",et[index])+" GeV\n "+
- AMath.ETA+" = "+String.format("%.3f",eta[index])+"\n "+
- AMath.PHI+" = "+String.format("%.3f",Math.toDegrees(phi[index]))+AMath.DEGREES;
- if(simpleOutput==2 || simpleOutput==3)
- output+= "\n Ex="+String.format("%.3f",et[index]*Math.cos(phi[index]))+" GeV "+
- "\n Ey="+String.format("%.3f",et[index]*Math.sin(phi[index]))+" GeV "+
- "\n Ez="+String.format("%.3f",et[index]*Math.sinh(eta[index]))+" GeV ";
- return output;
- }
-
- String[] decodedId = AIdHelper.getFullIdentifier(id[index]);
- StringBuffer msg = new StringBuffer();
- msg.append(getCellString(index, decodedId[0]));
- // iterate over decodedId to get further details (if available),
- // first item [0] was already printed out above, thus start from 1
- for(int i = 1; i < decodedId.length; i++)
- {
- msg.append("\n " + decodedId[i]);
- }
-
- msg.append(getHitString(index));
- // by zdenek 2009-01-20
- // layer is already present as sampling in the decodedId
- // sub[] should gradually be removed, don't print it for now
- // (see mess in AHashMap - !name.equals("sub")) grrrr
- /*
- msg.append("\n ");
- msg.append("layer = " + sampling[index]);
- msg.append("\n ");
- msg.append("subdetector = " + sub[index]);
- */
-
- return msg.toString();
- }
-
- /**
- * Returns the total transverse energy for this data type.
- *
- * @return double total transverse energy
- */
- public double getTotalTransverseEnergy()
- {
- double sumEt = 0.;
- for (int i = 0; i < numData; i++)
- {
- sumEt += et[i];
- }
- return sumEt;
- }
-
- /**
- * Returns information about the drawn hits, used for the v-plot.
- *
- * @return String information
- */
- public String getVPHitInfo()
- {
- applyCuts();
- if (numDraw == 0)
- return "";
- double sumE = 0.;
- double sumEt = 0.;
-
- for (int i = 0; i < numDraw; i++)
- {
- int j = listdl[i];
- sumEt += et[j];
- sumE += energy[j];
- }
-
- String msg = numDraw + " " + getNameScreenName();
- msg += " sum(ET) = " + String.format("%.1f",sumEt) + " sum(E) = " + String.format("%.1f",sumE);
- return msg;
- }
-
- /**
- * Returns the specified hits in the form of a four vector. Used by the list
- * manager.
- *
- * @param num int number of hits
- * @param list int[] indices of the hits
- * @return A4Vector four vector
- */
- public A4Vector get4Vector(int num, int[] list)
- {
- A4Vector sum = new A4Vector();
-
- for (int i = 0; i < num; ++i)
- {
- int j = list[i];
- double lambda = AMath.lambda(eta[j]);
-
- double pt = energy[j] * Math.cos(lambda);
- double pz = energy[j] * Math.sin(lambda);
-
- double px = pt * Math.cos(phi[j]);
- double py = pt * Math.sin(phi[j]);
-
- sum.add(px, py, pz, 0.);
- }
- return sum;
- }
-
- /**
- * Calorimeter cells can be drawn either explicitly or implicitly. In most
- * views cells that are located behind eachother are consolidated and only
- * the most energetic one is drawn explicitly. The other cells are drawn
- * implicitly, since their energy value is still added to the energy sum of
- * the explicitly drawn cell. The list manager does not know about the
- * implicitly drawn cells though, so this poses a problem when the user
- * requests information about a certain area of the canvas. This is solved
- * using this method. This function receives the list of explicitly drawn
- * cells and then adds the ones that were implicitly drawn in this
- * selection.
- *
- * @param drawn boolean[] initial drawn list containing only the explicitly
- * drawn cells
- * @return boolean[] drawn list containing the explicitly and the implicitly
- * drawn cells.
- */
- public boolean[] expandDrawn(boolean[] drawn)
- {
- makeDrawList();
- AProjection projection = ACanvas.getCanvas().getCurrentWindow().getProjection();
-
- for (int i = 0; i < numDraw; i++)
- {
- int j = listdl[i];
-
- if (drawn[j])
- continue;
-
- int detIndex = getDetectorIndex(j);
- int hitIndex = getHitIndex(j, projection);
-
- if (detIndex >= 0 && hitIndex >= 0) {
- if (cellTable != null && detIndex < cellTable.length
- && hitIndex < cellTable[detIndex].length) {
-
- int mappedTo = cellTable[detIndex][hitIndex];
-
- if (mappedTo >= 0 && drawn[mappedTo] == true) {
- drawn[j] = true;
- }
- }
- }
- }
-
- return drawn;
- }
-
- /**
- * Rebuilds the hit to geometry mapping for all calorimeters. Used when the
- * user has loaded a different geometry file.
- */
- public static void remakeHitToGeometryMapping()
- {
- //Get current event
- AEvent event = eventManager.getCurrentEvent();
- if (event != null){
- ACalorimeterData[] calorimeters = new ACalorimeterData[event.getCalorimeters().size()];
- event.getCalorimeters().toArray(calorimeters);
- for (int i = 0; i < calorimeters.length; i++)
- {
- calorimeters[i].makeHitToGeometryMapping();
- }
- }
- }
-
- /**
- * Draws the calorimeters. This method is called from AProjection2D.paint().
- *
- * @param window AWindow window to use
- * @param ag AGraphics graphics object to draw onto
- * @param projection AProjection2D current projection
- * @param event AEvent drawn event reference
- */
- public static void drawCalorimeters(AWindow window, AGraphics ag, AProjection2D projection, AEvent event)
- {
- int mode = parameterStore.get(projection.getName(), "Mode").getI();
-
- if(projection instanceof AProjectionYX || projection instanceof AProjectionFR)
- {
- //only grey out the GUI if relevant for the current window
- boolean changeGUI = false;
- if(window.equals(ACanvas.getCanvas().getCurrentWindow()))
- changeGUI = true;
-
- //grey out draw FCAL option if not on right layer of HEC
- AParameter drawFCAL = parameterStore.get("YX", "DrawFCAL");
- if(changeGUI)
- {
- if(!drawFCAL.isInitialized())
- drawFCAL.initialize();
- if(mode < AProjectionYX.MODE_HEC_2 || mode > AProjectionYX.MODE_HEC_4)
- drawFCAL.getNameComponent().setEnabled(false);
- else
- drawFCAL.getNameComponent().setEnabled(true);
- }
-
-
- //grey out split ETA, LAr bin and HEC bin options if not on summed endcaps option
- AParameter splitEta = parameterStore.get("YX", "SplitEta");
- AParameter LArBin = parameterStore.get("YX", "LArBin");
- AParameter HECBin = parameterStore.get("YX", "HECBin");
- if(changeGUI)
- {
- if(!HECBin.isInitialized())
- HECBin.initialize();
- if(!LArBin.isInitialized())
- LArBin.initialize();
- if(!splitEta.isInitialized())
- splitEta.initialize();
- }
- //Summed Endcaps has a different draw method
- if(mode == AProjectionYX.MODE_LAR_ENDCAP_SUMMED || mode == AProjectionYX.MODE_HEC_SUMMED)
- {
- if(changeGUI)
- {
- LArBin.getValueComponent().setEnabled(true);
- HECBin.getValueComponent().setEnabled(true);
- LArBin.getNameComponent().setEnabled(true);
- HECBin.getNameComponent().setEnabled(true);
- if(LArBin.getI()==3 || HECBin.getI()==3)
- {
- splitEta.getValueComponent().setEnabled(true);
- splitEta.getNameComponent().setEnabled(true);
- }
- else
- {
- splitEta.getValueComponent().setEnabled(false);
- splitEta.getNameComponent().setEnabled(false);
- }
- }
- ACalorimeterData[] calorimeters = new ACalorimeterData[event.getCalorimeters().size()];
- event.getCalorimeters().toArray(calorimeters);
- for (int i = 0; i < calorimeters.length; i++)
- {
- //check if in right calorimeter
- if ((mode == AProjectionYX.MODE_LAR_ENDCAP_SUMMED && !calorimeters[i].getName().equals("LAr")) ||
- (mode == AProjectionYX.MODE_HEC_SUMMED && !calorimeters[i].getName().equals("HEC")))
- continue;
- ADrawCalorimeterSummedEndcaps.drawCalorimeterSummedEndcaps(window,
- ag, projection, calorimeters[i], calorimeters[i].etaIndex,
- calorimeters[i].phiIndex, calorimeters[i].side);
- }
- return;
- }
- else
- {
- if(changeGUI)
- {
- LArBin.getValueComponent().setEnabled(false);
- HECBin.getValueComponent().setEnabled(false);
- splitEta.getValueComponent().setEnabled(false);
- LArBin.getNameComponent().setEnabled(false);
- HECBin.getNameComponent().setEnabled(false);
- splitEta.getNameComponent().setEnabled(false);
- }
- if (ALegendWindow.exists())
- ALegendWindow.getInstance().nothingToDisplay(window);
- }
- }
- else if (ALegendWindow.exists())
- ALegendWindow.getInstance().nothingToDisplay(window);
-
- if (projection instanceof AProjectionVP && mode == 0)
- {
- // The standard mode of the v-plot uses a different function.
- drawCalorimetersVPlot(window, ag, projection, event);
- return;
- }
-
- ACalorimeterData[] calorimeters = new ACalorimeterData[event.getCalorimeters().size()];
- event.getCalorimeters().toArray(calorimeters);
- ACoord[] data = new ACoord[calorimeters.length];
- double[][] area = new double[calorimeters.length][];
-
- for (int i = 0; i < calorimeters.length; i++)
- {
- // Retrieve the cell coordinates.
- data[i] = calorimeters[i].getUserNoTransform(projection);
-
- // Calculate the cell areas.
- area[i] = new double[data[i].index.length];
- for (int j = 0; j < data[i].index.length; j++)
- {
- area[i][j] = APolygon.getArea(data[i].hv[0][j], data[i].hv[1][j]);
- }
-
- // Let the calorimeter determine its minimum and maximum energy
- // density.
- calorimeters[i].calibrateLocalDensity(data[i].index, area[i]);
- }
-
- if (window.getProjection() instanceof AProjectionVP)
- {
- // In case of the v-plot we force the overall energy density
- // calibration.
- calibrateDensity(calorimeters, ENERGY_CALIB_OVERALL);
- }
- else
- {
- // Calibrate the energy density according to the user settings.
- calibrateDensity(calorimeters, ENERGY_CALIB_UNKNOWN);
- }
-
- for (int i = 0; i < calorimeters.length; i++)
- {
- // Apply the non linear transforms and convert to screen
- // coordinates.
- data[i] = window.calculateDisplay(projection.nonLinearTransform(data[i]));
-
- // Draw the cell frames.
- if (parameterStore.get(calorimeters[i].getName(), "Cells").getStatus())
- {
- drawFrames(calorimeters[i], data[i], window, ag);
- }
- }
-
- for (int i = 0; i < calorimeters.length; i++)
- {
- // Draw the cell geometry.
- if (parameterStore.get(calorimeters[i].getName(), "Cells").getStatus())
- {
- drawGeometry(calorimeters[i], data[i], window, ag);
- }
- }
-
- String[] histograms = { "TILE", "HEC", "LAr", "FCAL", "MBTS" };
- for (int j = 0; j < histograms.length; j++)
- {
- for (int i = 0; i < calorimeters.length; i++)
- {
- if (calorimeters[i].getCalorimeterName().equals(histograms[j]))
- {
- // Draw the histograms.
- drawHistogram(calorimeters[i], window, ag, projection);
- }
- }
- }
- for (int j = 0; j < histograms.length; j++)
- {
- for (int i = 0; i < calorimeters.length; i++)
- {
- if (calorimeters[i].getCalorimeterName().equals(histograms[j]))
- {
- // Draw the frames for the histograms.
- frameHistogram(calorimeters[i], window, ag, projection);
- }
- }
- }
-
- for (int i = 0; i < calorimeters.length; i++)
- {
- if (parameterStore.get(calorimeters[i].getName(), "Cells").getStatus())
- {
- // Scale the cell polygons.
- data[i] = calorimeters[i].scalePolygons(data[i], area[i]);
- // And draw them.
- drawHits(calorimeters[i], data[i], window, ag);
- }
- }
-
- }
-
- /**
- * Draws the calorimeters in the standard mode v-plot. This method is called
- * from drawCalorimeters and should not be used directly.
- *
- * @param window AWindow window to use
- * @param ag AGraphics graphics object to draw onto
- * @param projection AProjection2D current projection
- * @param event AEvent drawn event reference
- */
- private static void drawCalorimetersVPlot(AWindow window, AGraphics ag, AProjection2D projection, AEvent event)
- {
- ACalorimeterData[] calorimeters = new ACalorimeterData[event.getCalorimeters().size()];
- event.getCalorimeters().toArray(calorimeters);
-
- float[][] energies = new float[calorimeters.length][];
- int[] sizes = new int[calorimeters.length];
- ACoord[] points = new ACoord[calorimeters.length];
- Color[] colorMap = AColorMap.getColors();
- //if color by energy use different colormap
- for (int i = 0; i < calorimeters.length; i++)
- {
- if(calorimeters[i].CALORIMETER_NAME.equals("MBTS")) continue;
- if (parameterStore.get(calorimeters[i].getParameterGroup(), "ColorFunction").getI()
- == ACalorimeterData.COLOR_FUNC_ENERGY) {
- switch (AColorMap.getColorMap()) {
- case AColorMap.COLOR_MAP_DEFAULT1:
- case AColorMap.COLOR_MAP_DEFAULT2:
- case AColorMap.COLOR_MAP_M4M5:
- case AColorMap.COLOR_MAP_GRAYDET:
- case AColorMap.COLOR_MAP_ORIGINAL:
- // Use colors.
- colorMap = AColorMap.getColors(AColorMap.COLOR_MAP_HITCOL);
- break;
- case AColorMap.COLOR_MAP_GRAY:
- case AColorMap.COLOR_MAP_BW:
- // Use grayscale.
- colorMap = AColorMap.getColors(AColorMap.COLOR_MAP_GRAY_HITCOL);
- break;
- }
- } else if (parameterStore.get(calorimeters[i].getParameterGroup(), "ColorFunction").getI() == COLOR_FUNC_TIME) {
- colorMap = AColorMap.getShades(128);
- }
-
- points[i] = window.calculateDisplay(calorimeters[i].getVPPoints());
- energies[i] = calorimeters[i].getET(points[i].index);
- sizes[i] = energies[i].length;
- calorimeters[i].color();
- }
-
- for (int i = 0; i < calorimeters.length; i++)
- {
- for (int j = 0; j < sizes[i]; j++)
- {
- int size = (int) Math.sqrt(energies[i][j] * SCALE_FACTOR_VPLOT);
- if (size == 0)
- size++;
-
- int cellColor = calorimeters[i].color[points[i].index[j]];
- ag.setColor(colorMap[cellColor]);
- ag.drawPoint(calorimeters[i], points[i].index[j], points[i].hv[0][0][j],
- points[i].hv[1][0][j], size, size);
- }
- }
-
- }
-
- /**
- * Calibrating involves finding the minimum and maximum energy density
- * values. This function takes the local (per calorimeter) values and
- * calculates the overall values (if needed).
- *
- * @param calorimeters ACalorimeterData[] calorimeter data objects
- * @param mode int calibration mode, use APar.EN_CALIB_UNKNOWN to retrieve
- * the user setting
- */
- protected static void calibrateDensity(ACalorimeterData[] calorimeters, int mode)
- {
- if (mode == ENERGY_CALIB_UNKNOWN)
- {
- mode = parameterStore.get("LAr", "EnergyCalibration").getI();
- }
-
- // This array contains the calorimeter "types" to combine in the
- // calibration.
- String types[];
- switch (mode)
- {
- case ENERGY_CALIB_OVERALL:
- types = new String[] { "ALL" };
- break;
-
- case ENERGY_CALIB_BY_TYPE:
- types = new String[] { "ECAL", "HCAL" };
- break;
-
- case ENERGY_CALIB_BY_CALO:
- default:
- // Nothing to be done here.
- types = new String[0];
- break;
- }
-
- for (int i = 0; i < types.length; i++)
- {
- boolean first = true;
- double min = 0.0;
- double max = 0.0;
- for (int j = 0; j < calorimeters.length; j++)
- {
- if (calorimeters[j].getMaxDensity(types[i]) > 0)
- {
- if (first)
- {
- min = calorimeters[j].getMinDensity(types[i]);
- max = calorimeters[j].getMaxDensity(types[i]);
- first = false;
- }
-
- if (calorimeters[j].getMinDensity(types[i]) < min)
- {
- min = calorimeters[j].getMinDensity(types[i]);
- }
- if (calorimeters[j].getMaxDensity(types[i]) > max)
- {
- max = calorimeters[j].getMaxDensity(types[i]);
- }
- }
- }
- for (int j = 0; j < calorimeters.length; j++)
- {
- calorimeters[j].setMinDensity(types[i], min);
- calorimeters[j].setMaxDensity(types[i], max);
- }
- }
- }
-
- /**
- * Draws the frame for the cell geometry of a calorimeter. All frames are
- * drawn before drawing the cells themselves. This way a frame can never be
- * put on top of a cell from another calorimeter.
- *
- * @param calorimeter ACalorimeterData data collection to which this
- * function applies
- * @param display ACoord cell coordinates to be drawn
- * @param window AWindow window to use
- * @param ag AGraphics graphics object to draw onto
- */
- protected static void drawFrames(ACalorimeterData calorimeter, ACoord display, AWindow window, AGraphics ag)
- {
-
- String name = calorimeter.getCalorimeterName();
- Color[] colorMap = AColorMap.getColors();
- int[] index = display.index;
- int[] type = calorimeter.getType(index);
-
- boolean drawCellGeometry = parameterStore.get(name, "CellGeometry").getStatus();
- boolean drawFrame = parameterStore.get(name, "Frame").getStatus();
- int frameColor = parameterStore.get(name, "Frame").getI();
- //only draw frames for Grey/BW color maps if is selected to draw frames
- if(drawFrame && AColorMap.drawFrames())
- drawFrame=true;
- else
- drawFrame=false;
-
- // For the v-plot we override these settings.
- if (window.getProjection() instanceof AProjectionVP)
- {
- drawCellGeometry = parameterStore.get("VP", "VPlotIsland").getStatus();
- drawFrame = true;
- frameColor = AColorMap.WH;
- }
-
- // Draw frames for the filled cells.
- if (drawFrame && drawCellGeometry)
- {
- for (int i = 0; i < index.length; i++)
- {
- ag.updateDrawParameters(calorimeter.getDrawParameters(0, type[i]));
- ag.setColor(colorMap[frameColor]);
- ag.drawPolygon(display.hv[0][i], display.hv[1][i], display.hv[0][i].length);
- }
- }
- }
-
- /**
- * Draws the frame for the cell geometry and outline of a calorimeter. All
- * frames are drawn before drawing the cells themselves. This way a frame
- * can never be put on top of a cell from another calorimeter.
- *
- * @param calorimeter ACalorimeterData data collection to which this
- * function applies
- * @param display ACoord cell coordinates to be drawn
- * @param window AWindow window to use
- * @param ag AGraphics graphics object to draw onto
- */
- protected static void drawGeometry(ACalorimeterData calorimeter, ACoord display, AWindow window, AGraphics ag)
- {
- String name = calorimeter.getCalorimeterName();
- Color[] colorMap = AColorMap.getColors();
- int[] index = display.index;
- int[] type = calorimeter.getType(index);
-
- boolean drawCellGeometry = parameterStore.get(name, "CellGeometry").getStatus();
- boolean drawCellOutline = parameterStore.get(name, "CellOutline").getStatus();
- boolean cutByLayer = false;
- int cellGeometryColor = parameterStore.get(name, "CellGeometry").getI();
- int cellOutlineColor = parameterStore.get(name, "CellOutline").getI();
- int cutLayer = 0;
-
- // For the v-plot we override some of these settings.
- if (window.getProjection() instanceof AProjectionVP)
- {
- drawCellGeometry = parameterStore.get("VP", "VPlotIsland").getStatus();
- cellGeometryColor = parameterStore.get("VP", "VPlotIsland").getI();
-
- int mode = parameterStore.get("VP", "Mode").getI();
-
- if (mode >= AProjectionVP.MODE_HCAL_LAYER_0)
- {
- cutByLayer = true;
- cutLayer = mode - AProjectionVP.MODE_HCAL_LAYER_0;
- }
- else if (mode >= AProjectionVP.MODE_ECAL_LAYER_0)
- {
- cutByLayer = true;
- cutLayer = mode - AProjectionVP.MODE_ECAL_LAYER_0;
- }
- }
-
- // Draw filled cells.
- if (drawCellGeometry)
- {
- for (int i = 0; i < index.length; i++)
- {
- ag.updateDrawParameters(calorimeter.getDrawParameters(1, type[i]));
- ag.setColor(colorMap[cellGeometryColor]);
- ag.fillPolygon(display.hv[0][i], display.hv[1][i], display.hv[0][i].length);
- }
- }
-
- // Draw cell outlines.
- if (drawCellOutline)
- {
- ag.updateDrawParameters(new ADrawParameters(true, cellOutlineColor, 0, 1, 0, 0, false, 1, 0));
- for (int i = 0; i < index.length; ++i)
- {
- if (!cutByLayer || calorimeter.getSampling(index[i]) == cutLayer)
- {
- ag.drawPolygon(display.hv[0][i], display.hv[1][i], display.hv[0][i].length);
- }
- }
- }
- }
-
- /**
- * Draws the calorimeter hits.
- *
- * @param calorimeter ACalorimeterData calorimeter object the hits belong to
- * @param display ACoord cell coordinates to be drawn
- * @param window AWindow window to use
- * @param ag AGraphics graphics object to draw onto
- */
- protected static void drawHits(ACalorimeterData calorimeter, ACoord display, AWindow window, AGraphics ag)
- {
- String name = calorimeter.getCalorimeterName();
- int[] index = display.index;
- int[] color = calorimeter.getColor(index);
- int[] type = calorimeter.getType(index);
- int[] sampling = calorimeter.getSampling(index);
-
- // This cut is performed just before drawing the hits, the geometry has
- // been drawn already.
- // This results in the irregular v-plot islands that help the user
- // locate a certain position in different views.
- boolean cutByLayer = false;
- int cutLayer = 0;
-
- if (window.getProjection() instanceof AProjectionVP)
- {
- int mode = parameterStore.get("VP", "Mode").getI();
-
- if (mode >= AProjectionVP.MODE_HCAL_LAYER_0)
- {
- cutByLayer = true;
- cutLayer = mode - AProjectionVP.MODE_HCAL_LAYER_0;
- }
- else if (mode >= AProjectionVP.MODE_ECAL_LAYER_0)
- {
- cutByLayer = true;
- cutLayer = mode - AProjectionVP.MODE_ECAL_LAYER_0;
- }
- }
-
- AParameter cellGeometry = parameterStore.get(name, "CellGeometry");
- AParameter colorFunction = parameterStore.get(name, "ColorFunction");
- boolean drawFrame = parameterStore.get(name, "Frame").getStatus();
- int frameColor = parameterStore.get(name, "Frame").getI();
- //only draw frames for Grey/BW color maps if is selected to draw frames
- if(drawFrame && AColorMap.drawFrames())
- drawFrame=true;
- else
- drawFrame=false;
-
- Color[] colorMap = AColorMap.getColors();
- if (colorFunction.getI() == COLOR_FUNC_ENERGY)
- {
- switch (AColorMap.getColorMap())
- {
- case AColorMap.COLOR_MAP_DEFAULT1:
- case AColorMap.COLOR_MAP_DEFAULT2:
- case AColorMap.COLOR_MAP_M4M5:
- case AColorMap.COLOR_MAP_GRAYDET:
- case AColorMap.COLOR_MAP_ORIGINAL:
- // Use colors.
- colorMap = AColorMap.getColors(AColorMap.COLOR_MAP_HITCOL);
- break;
- case AColorMap.COLOR_MAP_GRAY:
- case AColorMap.COLOR_MAP_BW:
- // Use grayscale.
- colorMap = AColorMap.getColors(AColorMap.COLOR_MAP_GRAY_HITCOL);
- break;
- }
- }
- else if (colorFunction.getI() == COLOR_FUNC_TIME)
- {
- colorMap = AColorMap.getShades(128);
- }
-
- if (drawFrame && !cellGeometry.getStatus())
- {
- for (int i = 0; i < index.length; i++)
- {
- if (!cutByLayer || sampling[i] == cutLayer)
- {
- ag.updateDrawParameters(calorimeter.getDrawParameters(0, type[i]));
- ag.setColor(colorMap[frameColor]);
- ag.drawPolygon(display.hv[0][i], display.hv[1][i], display.hv[0][i].length);
- }
- }
- }
-
- for (int i = 0; i < index.length; i++)
- {
- if (!cutByLayer || sampling[i] == cutLayer)
- {
- ag.updateDrawParameters(calorimeter.getDrawParameters(1, type[i]));
- ag.setColor(colorMap[color[i]]);
- ag.fillPolygon(calorimeter, index[i], display.hv[0][i], display.hv[1][i], display.hv[0][i].length);
- }
- }
- }
-
- /**
- * Draws the calorimeter histograms.
- *
- * @param calorimeter ACalorimeterData calorimeter object the histograms
- * belong to
- * @param window AWindow window to use
- * @param ag AGraphics graphics object to draw onto
- * @param projection AProjection2D current projection
- */
- protected static void drawHistogram(ACalorimeterData calorimeter, AWindow window, AGraphics ag, AProjection2D projection)
- {
- String name = calorimeter.getCalorimeterName();
- if (!parameterStore.get(name, "Histogram").getStatus())
- return;
-
- ACoord[] histograms = calorimeter.getUserHistograms(projection);
- for (int i = 0; i < histograms.length; i++)
- {
- ACoord display = window.calculateDisplay(histograms[i]);
- AHistogram hist = (AHistogram) histograms[i].source;
- hist.completeTowers(display);
-
- // for rubberband "new list" or "summarize" feature
- if (ag.getGraphics2D() instanceof ADrawnGraphics2D)
- ((ADrawnGraphics2D) ag.getGraphics2D()).addHistogramData(hist);
-
- boolean onTop;
- if (parameterStore.getUnknown(name, "OnTopHistoFrame") != null)
- {
- onTop = parameterStore.get(name, "OnTopHistoFrame").getStatus();
- }
- else
- {
- onTop = false;
- }
-
- // Draw frame for the histogram.
- if (parameterStore.get(name, "HistoFrame").getStatus() && !onTop)
- {
- int frameColor = parameterStore.get(name, "HistoFrame").getI();
-
- ag.updateDrawParameters(new ADrawParameters(true, frameColor, 0, 0, 1, 0));
- for (int j = 0; j < display.hv[0].length; j++)
- {
- ag.drawPolygon(display.hv[0][j], display.hv[1][j], display.hv[0][j].length);
- }
- }
-
- // Draw histogram towers.
- int fillColor = parameterStore.get(name, "Histogram").getI();
- ag.updateDrawParameters(new ADrawParameters(true, fillColor, 0, 1, 0, 0));
- for (int j = 0; j < display.hv[0].length; j++)
- {
- ag.fillPolygon(hist, display.index[j], display.hv[0][j], display.hv[1][j], display.hv[0][j].length);
- }
- }
- }
-
- /**
- * Draws the calorimeter histogram frames.
- *
- * @param calorimeter ACalorimeterData calorimeter object the histograms
- * belong to
- * @param window AWindow window to use
- * @param ag AGraphics graphics object to draw onto
- * @param projection AProjection2D current projection
- */
- protected static void frameHistogram(ACalorimeterData calorimeter, AWindow window, AGraphics ag, AProjection2D projection)
- {
- String name = calorimeter.getCalorimeterName();
- if (!parameterStore.get(name, "Histogram").getStatus())
- return;
-
- ACoord[] histograms = calorimeter.getUserHistograms(projection);
- for (int i = 0; i < histograms.length; i++)
- {
- ACoord display = window.calculateDisplay(histograms[i]);
- AHistogram hist = (AHistogram) display.source;
-
- hist.completeTowers(display);
-
- boolean onTop = false;
- if (parameterStore.getUnknown(name, "OnTopHistoFrame") != null)
- {
- onTop = parameterStore.get(name, "OnTopHistoFrame").getStatus();
- }
-
- // Draw frame for the histogram.
- if (parameterStore.get(name, "HistoFrame").getStatus() && onTop)
- {
- int frameColor = parameterStore.get(name, "HistoFrame").getI();
-
- ag.updateDrawParameters(new ADrawParameters(true, frameColor, 0, 1, 0, 0));
- for (int j = 0; j < display.hv[0].length; j++)
- {
- ag.drawPolygon(display.hv[0][j], display.hv[1][j], display.hv[0][j].length);
- }
- }
- }
- }
-
- public static void drawEndcapHistogram(ACalorimeterData calorimeter, AWindow window, AGraphics ag, AProjection2D projection)
- {
- //filter the draw list for the histograms
- calorimeter.filterDrawList(projection);
- //Draw the histograms.
- drawHistogram(calorimeter, window, ag, projection);
- // Draw the frames for the histograms.
- frameHistogram(calorimeter, window, ag, projection);
- }
-
-
-
- /**
- * getLookupTableArray() parses String[][] s with comma separated values
- * (CSV) and converts each number to float lookup table value which is used
- * for calorimeter real pulse shapes plots
- * @param s String[][]
- * @param numLookupTableValues int
- * @return float[]
- * @throws AAtlantisException
- */
- protected static float[] getLookupTableArray(String[][] s, int numLookupTableValues)
- throws AAtlantisException
- {
- float[] r = new float[numLookupTableValues];
- int i = 0;
- for(int k = 0; k < s.length; k++)
- {
- for(int l = 0; l < s[k].length; l++)
- {
- if("".equals(s[k][l]))
- {
- // command and new line results into empty value - ignore
- continue;
- }
- try
- {
- // there shouldn't be more than NUMBER_OF_LOOKUP_VALUES
- // i.e. numLookupTableValues
- if(i >= numLookupTableValues)
- {
- String m = "more lookup values than NUMBER_OF_LOOKUP_VALUES: " +
- i + " >= " + numLookupTableValues;
- throw new AAtlantisException(m);
- }
- r[i] = Float.valueOf(s[k][l]).floatValue();
- i++;
- }
- catch(NumberFormatException ex)
- {
- throw new AAtlantisException("number format exception: " + s[k][l]);
- }
- }
- }
-
- // now the i counter shall be equal to numLookupTableValues
- if(i != numLookupTableValues)
- {
- throw new AAtlantisException("incorrect number to items (" + i + ") " +
- "in the lookup table, should be " + numLookupTableValues);
- }
-
- // all right, return the result float array
- return r;
-
- } // getLookupTableArray() ----------------------------------------------
-
-
-
- /**
- * Calculate real pulse shapes values based on the values in the
- * lookup tables (parameters amplitude and time, etc)
-
- * @param xTime double
- * @param cellTime double
- * @param cellPedestal double
- * @param energy double
- * @param amplitude float[] lookup table
- * @param time float[] lookup table
- * @param numerOfLookupValues int
- * @return double
- * @throws AAtlantisException
- */
- protected double getPhysicsPulseShape(double localTime,
- double cellPedestal, double energy,
- float[] amplitude, float[] time,
- int numerOfLookupValues)
- throws AAtlantisException
- {
- double tdiv = 0.0;
- int lookup = 0;
- double xpulse = 0.0;
-
- tdiv = time[1] - time[0];
- lookup = (int) ((localTime - time[0]) / tdiv);
-
- if(lookup < 0)
- {
- lookup = 0;
- }
- if(lookup >= numerOfLookupValues - 1)
- {
- lookup = numerOfLookupValues - 2; // -1 was off by 1
- }
-
- try
- {
- if(lookup == 0 || lookup == numerOfLookupValues - 2)
- {
- xpulse = amplitude[lookup];
- }
- else
- {
- xpulse = amplitude[lookup] + ((amplitude[lookup + 1] -
- amplitude[lookup]) / tdiv) * (localTime - time[lookup]);
- }
- }
- catch(ArrayIndexOutOfBoundsException ex)
- {
- String m = CALORIMETER_NAME + " getPhysicsPulseShape():\n" +
- " lookup index out of bound: lookup = " + lookup;
- throw new AAtlantisException(m);
- }
-
- return (xpulse * energy) + cellPedestal;
-
- } // getPhysicsPulseShape() ---------------------------------------------
-
-
-
- /**
- *
- * Events from DPD don't contain all necessary data
- * if all adc counts are 0, then print info message and
- * no pulse shape plot window as it may lead to confusion.
- * This method is aimed to check availability of adc counts digits.
- *
- * @param adcCountsLocal
- * @return true if any ADC counts are non-zero
- */
- protected static boolean checkADCCountsAvailability(int[][] adcCountsLocal)
- {
- boolean adcCountsAvailable = false;
-
- for(int x = 0; x < adcCountsLocal.length; x++)
- {
- for(int y = 0; y < adcCountsLocal[0].length; y++)
- {
- if(adcCountsLocal[x][y] != 0)
- {
- adcCountsAvailable = true;
- break;
- }
- }
- if(adcCountsAvailable)
- {
- break;
- }
- }
-
- return adcCountsAvailable;
-
- } // checkADCCountsAvailability() ---------------------------------------
-
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/data/ACalorimeterRPSPLT.java b/graphics/AtlantisJava/src/atlantis/data/ACalorimeterRPSPLT.java
deleted file mode 100644
index 9f8890bec80..00000000000
--- a/graphics/AtlantisJava/src/atlantis/data/ACalorimeterRPSPLT.java
+++ /dev/null
@@ -1,260 +0,0 @@
-package atlantis.data;
-
-import java.util.HashMap;
-
-import atlantis.utils.ALogger;
-import atlantis.utils.AAtlantisException;
-
-/**
- *
- * Calorimeter Real Pulse Shape Plot Lookup
- * Tables. The class accommodates lookup tables (arrays) for the Tile and LAr,
- * FCAL and HEC calorimeters. If the real pulse shape plots data are found in
- * the event files, the corresponding arrays within this class are initialised
- * from A[TILE|LAr|FCAL|HEC]Data class(es). The arrays are initialised from
- * CSV (comma separated values files) just once per Atlantis session.
- *
- * @author Zdenek Maxa
- */
-public final class ACalorimeterRPSPLT
-{
- private static ALogger logger = ALogger.getLogger(ACalorimeterRPSPLT.class);
-
- // TILE calorimeter, lookup table time values
- protected static float[] TILE_TIME = null;
- // TILE calorimeter, lookup table amplitude values
- protected static float[] TILE_AMPLITUDE = null;
-
-
- // FCAL calorimeter, lookup table time values
- protected static float[] FCAL_TIME = null;
- // FCAL calorimeter, lookup table layer 0, amplitude values
- protected static float[] FCAL_LAYER0_AMPLITUDE = null;
- // FCAL calorimeter, lookup table layer 1, amplitude values
- protected static float[] FCAL_LAYER1_AMPLITUDE = null;
- // FCAL calorimeter, lookup table layer 2, amplitude values
- protected static float[] FCAL_LAYER2_AMPLITUDE = null;
-
-
- // HEC calorimeter, lookup table time values
- protected static float[] HEC_TIME = null;
- // HEC calorimeter, lookup table amplitude values
- protected static float[] HEC_AMPLITUDE = null;
-
-
-
-
- // LAr calorimeter, lookup tables
- // for time (the same array for both
- // barrel/endcap, all layer and regions and eta ranges
- // currently (2009-02-11) there are 58 various arrays for LAr, it
- // is not sustainable to have all these in separate arrays - for LAr
- // there will be defined a container - keys are lookup tables names
- // as defined in the lookup table file and values are float[] arrays
- private static HashMap<String, float[]> larTables = null;
-
- // set the LAr table keys in a static block
- // explanation of the LAr lookup tables names (the names are identical
- // to comma separated values array names as in the look up table file):
- // LAR_TIME - time constants - used for barrel/endcap, all layers,
- // all regions, all eta ranges
- // LAR_BARREL_L1_R0_AMPLITUDE - barrel, layer 1, region 0, etc, etc
- // LAR_ENDCAP_L0_R0_ETA0_AMPLITUDE - endcap, layer 0, region 0, eta
- // range 0 - very many of these
- // bother to define the array names here to be really safe ... otherwise
- // could just rely on the CSV file ...
- static
- {
- larTables = new HashMap<String, float[]>(70); // not more arrays than 70
-
- larTables.put("LAR_TIME", null);
- larTables.put("LAR_BARREL_LAYER1_REGION0_AMPLITUDE", null);
- larTables.put("LAR_BARREL_LAYER1_REGION1_AMPLITUDE", null);
- larTables.put("LAR_BARREL_LAYER2_REGION0_AMPLITUDE", null);
- larTables.put("LAR_BARREL_LAYER2_REGION1_AMPLITUDE", null);
- larTables.put("LAR_BARREL_LAYER3_REGION0_AMPLITUDE", null);
- larTables.put("LAR_ENDCAP_LAYER0_REGION0_ETA0_AMPLITUDE", null);
- larTables.put("LAR_ENDCAP_LAYER1_REGION0_ETA0_AMPLITUDE", null);
- larTables.put("LAR_ENDCAP_LAYER1_REGION0_ETA1_AMPLITUDE", null);
- larTables.put("LAR_ENDCAP_LAYER1_REGION0_ETA2_AMPLITUDE", null);
- larTables.put("LAR_ENDCAP_LAYER1_REGION0_ETA3_AMPLITUDE", null);
- larTables.put("LAR_ENDCAP_LAYER1_REGION0_ETA4_AMPLITUDE", null);
- larTables.put("LAR_ENDCAP_LAYER1_REGION0_ETA5_AMPLITUDE", null);
- larTables.put("LAR_ENDCAP_LAYER1_REGION0_ETA6_AMPLITUDE", null);
- larTables.put("LAR_ENDCAP_LAYER1_REGION0_ETA7_AMPLITUDE", null);
- larTables.put("LAR_ENDCAP_LAYER1_REGION1_ETA0_AMPLITUDE", null);
- larTables.put("LAR_ENDCAP_LAYER1_REGION2_ETA0_AMPLITUDE", null);
- larTables.put("LAR_ENDCAP_LAYER1_REGION2_ETA1_AMPLITUDE", null);
- larTables.put("LAR_ENDCAP_LAYER1_REGION2_ETA2_AMPLITUDE", null);
- larTables.put("LAR_ENDCAP_LAYER1_REGION2_ETA3_AMPLITUDE", null);
- larTables.put("LAR_ENDCAP_LAYER1_REGION3_ETA0_AMPLITUDE", null);
- larTables.put("LAR_ENDCAP_LAYER1_REGION3_ETA1_AMPLITUDE", null);
- larTables.put("LAR_ENDCAP_LAYER1_REGION3_ETA2_AMPLITUDE", null);
- larTables.put("LAR_ENDCAP_LAYER1_REGION4_ETA0_AMPLITUDE", null);
- larTables.put("LAR_ENDCAP_LAYER1_REGION4_ETA1_AMPLITUDE", null);
- larTables.put("LAR_ENDCAP_LAYER1_REGION4_ETA2_AMPLITUDE", null);
- larTables.put("LAR_ENDCAP_LAYER1_REGION4_ETA3_AMPLITUDE", null);
- larTables.put("LAR_ENDCAP_LAYER1_REGION4_ETA4_AMPLITUDE", null);
- larTables.put("LAR_ENDCAP_LAYER1_REGION5_ETA0_AMPLITUDE", null);
- larTables.put("LAR_ENDCAP_LAYER2_REGION0_ETA0_AMPLITUDE", null);
- larTables.put("LAR_ENDCAP_LAYER2_REGION0_ETA1_AMPLITUDE", null);
- larTables.put("LAR_ENDCAP_LAYER2_REGION0_ETA2_AMPLITUDE", null);
- larTables.put("LAR_ENDCAP_LAYER2_REGION0_ETA3_AMPLITUDE", null);
- larTables.put("LAR_ENDCAP_LAYER2_REGION0_ETA4_AMPLITUDE", null);
- larTables.put("LAR_ENDCAP_LAYER2_REGION0_ETA5_AMPLITUDE", null);
- larTables.put("LAR_ENDCAP_LAYER2_REGION0_ETA6_AMPLITUDE", null);
- larTables.put("LAR_ENDCAP_LAYER2_REGION0_ETA7_AMPLITUDE", null);
- larTables.put("LAR_ENDCAP_LAYER2_REGION1_ETA0_AMPLITUDE", null);
- larTables.put("LAR_ENDCAP_LAYER2_REGION1_ETA1_AMPLITUDE", null);
- larTables.put("LAR_ENDCAP_LAYER2_REGION1_ETA2_AMPLITUDE", null);
- larTables.put("LAR_ENDCAP_LAYER2_REGION1_ETA3_AMPLITUDE", null);
- larTables.put("LAR_ENDCAP_LAYER2_REGION1_ETA4_AMPLITUDE", null);
- larTables.put("LAR_ENDCAP_LAYER2_REGION1_ETA5_AMPLITUDE", null);
- larTables.put("LAR_ENDCAP_LAYER2_REGION1_ETA6_AMPLITUDE", null);
- larTables.put("LAR_ENDCAP_LAYER2_REGION1_ETA7_AMPLITUDE", null);
- larTables.put("LAR_ENDCAP_LAYER2_REGION1_ETA8_AMPLITUDE", null);
- larTables.put("LAR_ENDCAP_LAYER2_REGION1_ETA9_AMPLITUDE", null);
- larTables.put("LAR_ENDCAP_LAYER2_REGION1_ETA10_AMPLITUDE", null);
- larTables.put("LAR_ENDCAP_LAYER3_REGION0_ETA0_AMPLITUDE", null);
- larTables.put("LAR_ENDCAP_LAYER3_REGION0_ETA1_AMPLITUDE", null);
- larTables.put("LAR_ENDCAP_LAYER3_REGION0_ETA2_AMPLITUDE", null);
- larTables.put("LAR_ENDCAP_LAYER3_REGION0_ETA3_AMPLITUDE", null);
- larTables.put("LAR_ENDCAP_LAYER3_REGION0_ETA4_AMPLITUDE", null);
- larTables.put("LAR_ENDCAP_LAYER3_REGION0_ETA5_AMPLITUDE", null);
- larTables.put("LAR_ENDCAP_LAYER3_REGION0_ETA6_AMPLITUDE", null);
- larTables.put("LAR_ENDCAP_LAYER3_REGION0_ETA7_AMPLITUDE", null);
- larTables.put("LAR_ENDCAP_LAYER3_REGION0_ETA8_AMPLITUDE", null);
- larTables.put("LAR_ENDCAP_LAYER3_REGION0_ETA9_AMPLITUDE", null);
- }
-
-
-
-
- public static boolean areFCALLookupTablesInitialized()
- {
- if(FCAL_LAYER0_AMPLITUDE != null &&
- FCAL_LAYER1_AMPLITUDE != null &&
- FCAL_LAYER2_AMPLITUDE != null &&
- FCAL_TIME != null)
- {
- return true;
- }
- else
- {
- return false;
- }
-
- } // areFCALLookupTablesInitialized() -----------------------------------
-
-
-
- public static boolean areHECLookupTablesInitialized()
- {
- if(HEC_TIME != null && HEC_AMPLITUDE != null)
- {
- return true;
- }
- else
- {
- return false;
- }
-
- } // areHECLookupTablesInitialized() ------------------------------------
-
-
-
- public static boolean areTileLookupTablesInitialized()
- {
- if(TILE_TIME != null && TILE_AMPLITUDE != null)
- {
- return true;
- }
- else
- {
- return false;
- }
-
- } // areTileLookupTablesInitialized() -----------------------------------
-
-
-
- /**
- * Method is called at LAr constructor, i.e. at the beginning of each
- * event to check if all lookup tables for LAr are properly initialised.
- * The check is performed only when other necessary LAr are is available
- * in a given event file.
- * @return true if all float arrays were properly initialised
- */
- public static boolean areLarLookupTablesInitialized()
- {
- // iterate over all keys in the container and check if all
- // float arrays were properly initialised
- for(String key : larTables.keySet())
- {
- if(larTables.get(key) == null)
- {
- logger.error("LAr real pulse shapes plots lookup table " +
- "\"" + key + "\" was not initialised.");
- return false;
- }
- }
-
- return true;
-
- } // areLarLookupTablesInitialized() ------------------------------------
-
-
-
- public static void setLarTable(String key, float[] array) throws AAtlantisException
- {
- logger.debug("Setting LAr pulse shapes lookup table \"" + key + "\"");
-
- if(larTables.containsKey(key))
- {
- // it certainly already should contain the key (defined above)
- if(larTables.get(key) != null)
- {
- throw new AAtlantisException("LAr pulse shapes lookup table \"" +
- key + "\" has already been defined.");
- }
- else
- {
- larTables.put(key, array);
- }
- }
- else
- {
- throw new AAtlantisException("LAr pulse shapes lookup table - " +
- "entry \"" + key + "\" has not been created.");
- }
-
- } // setLarTable() ------------------------------------------------------
-
-
-
- public static float[] getLarTable(String key) throws AAtlantisException
- {
- logger.debug("Getting LAr pulse shapes lookup table \"" + key + "\"");
- if(larTables.containsKey(key))
- {
- float[] r = larTables.get(key);
- if(r == null)
- {
- throw new AAtlantisException("LAr pulse shape lookup table " +
- "key \"" + key + "\" is null.");
- }
- else
- {
- return r;
- }
- }
- else
- {
- throw new AAtlantisException("LAr pulse shape lookup table " +
- "entry \"" + key + "\" has not been created.");
- }
-
- } // getLarTable() ------------------------------------------------------
-
-
-} // class ACalorimeterRPSPLT ===============================================
diff --git a/graphics/AtlantisJava/src/atlantis/data/AClusterData.java b/graphics/AtlantisJava/src/atlantis/data/AClusterData.java
deleted file mode 100644
index 9428320eec9..00000000000
--- a/graphics/AtlantisJava/src/atlantis/data/AClusterData.java
+++ /dev/null
@@ -1,385 +0,0 @@
-package atlantis.data;
-
-import atlantis.canvas.AWindow;
-import atlantis.event.AAssociation;
-import atlantis.event.AData;
-import atlantis.event.AEvent;
-import atlantis.globals.AGlobals;
-import atlantis.graphics.ACoord;
-import atlantis.graphics.AGraphics;
-import atlantis.projection.AProjection2D;
-import atlantis.projection.AProjectionVP;
-import atlantis.utils.A3Vector;
-import atlantis.utils.A4Vector;
-import atlantis.utils.AHashMap;
-import atlantis.utils.AMath;
-
-/**
- * Calo Clusters for the moment made from LAr cells
- *
- * Also contain AOD Calo Clusters from 24/10/2006
- */
-public class AClusterData extends AData
-{
- protected float[] eT;
- protected float[] eta;
- protected float[] phi;
-
- public String getParameterGroup()
- {
- return "Cluster";
- }
-
- @Override
- public String getName()
- {
- return "Cluster";
- }
-
- public String getNameScreenName()
- {
- return "Cluster";
- }
-
- public float getET(int index)
- {
- return eT[index];
- }
-
- public float getEta(int index)
- {
- return eta[index];
- }
-
- public float getPhi(int index)
- {
- return phi[index];
- }
-
- AClusterData(AHashMap p, AEvent e)
- {
- super(p,e);
-
- eta = p.getFloatArray("eta");
- phi = p.getFloatArray("phi");
- if (p.get("et") != null)
- eT = p.getFloatArray("et");
- else
- {
- float[] energy = p.getFloatArray("energy");
- eT = new float[numData];
- for (int i = 0; i < numData; ++i)
- eT[i] = (float) Math.abs(energy[i] * Math.cos(AMath.lambda(eta[i])));
- }
-
- String assocKey = getName() + getStoreGateKey();
- if (p.get("numCells") != null)
- {
- event.getAssociationManager().add(new AAssociation(assocKey, "LAr", p.getIntArray("numCells"), p.getIntArray("cells"),event));
- event.getAssociationManager().add(new AAssociation(assocKey, "TILE", p.getIntArray("numCells"), p.getIntArray("cells"),event));
- }
- }
-
- protected int getDrawOrFill()
- {
- return AGraphics.FILL;
- }
-
- protected void applyCuts()
- {
- cutIndex();
- cut("CutsCalo", "ClusterET", " |ET|", eT);
- cutPhi(phi);
- cutEta(eta);
- }
-
- protected int internalColor()
- {
- int colorFunction = parameterStore.get(PARAMETER_GROUP, "ColorFunction").getI();
-
- switch (colorFunction)
- {
- case 0: // by constant
- colorByConstant();
- break;
- case 1: // by index
- colorByIndex();
- break;
- case 2: // by objects
- colorByObjects();
- break;
- }
- return 3;
- }
-
- public String getHitInfo(int index)
- {
- int simpleOutput = AGlobals.instance().getSimpleOutput();
- if(simpleOutput>0){
- String output = getNameScreenName()+" index: " + index;
- if(simpleOutput==1 || simpleOutput==3)
- output+= "\n ET="+String.format("%.3f",eT[index])+" GeV\n "+
- AMath.ETA+" = "+String.format("%.3f",eta[index])+"\n "+
- AMath.PHI+" = "+String.format("%.3f",Math.toDegrees(phi[index]))+AMath.DEGREES;
- if(simpleOutput==2 || simpleOutput==3)
- output+= "\n Ex="+String.format("%.3f",eT[index]*Math.cos(phi[index]))+" GeV "+
- "\n Ey="+String.format("%.3f",eT[index]*Math.sin(phi[index]))+" GeV "+
- "\n Ez="+String.format("%.3f",eT[index]*Math.sinh(eta[index]))+" GeV ";
- return output;
- }
-
- String k = this.getStoreGateKey();
- String sgKey = k != null ? k : "n/a";
- StringBuffer msg = new StringBuffer(getNameScreenName());
- msg.append(" (id: " + id[index] + " index: " + index + ")");
- msg.append("\n storegate key: ");
- msg.append(sgKey);
- msg.append("\n ET = ");
- msg.append(String.format("%.3f",eT[index]));
- msg.append(" GeV\n E = ");
- msg.append(String.format("%.3f",Math.abs(eT[index]/Math.cos(AMath.lambda(eta[index])))));
- msg.append(" GeV\n ");
- msg.append(AMath.ETA);
- msg.append(" = ");
- msg.append(String.format("%.3f",eta[index]));
- msg.append("\n ");
- msg.append(AMath.PHI);
- msg.append(" = ");
- msg.append(String.format("%.3f",Math.toDegrees(phi[index])) + AMath.DEGREES);
- msg.append(" (" + String.format("%.3f",phi[index]) + " rad)");
-
- return msg.toString();
- }
-
- public String getVPHitInfo()
- {
- makeDrawList();
- if (numDraw == 0)
- return "";
- double sumE = 0.;
- double sumET = 0.;
-
- for (int i = 0; i < numDraw; ++i)
- {
- sumET += Math.abs(eT[listdl[i]]);
- sumE += Math.abs(eT[listdl[i]] / Math.cos(AMath.lambda(eta[listdl[i]])));
- }
-
- StringBuffer msg = new StringBuffer("");
- msg.append(numDraw);
- msg.append(" ");
- msg.append(getStoreGateKey() != null ? getStoreGateKey() : getNameScreenName());
- msg.append(" sum(ET) = ");
- msg.append(String.format("%.1f",sumET));
- msg.append(" sum(E) = ");
- msg.append(String.format("%.1f",sumE));
-
- return msg.toString();
- }
-
- public A4Vector get4Vector(int num, int[] list)
- {
- A4Vector sum = new A4Vector();
- for (int i = 0; i < num; ++i)
- {
- int k = list[i];
- A3Vector start = A3Vector.fromRhoPhiZ(0., 0., 0.);
- double tL = AMath.tanLambda(eta[k]);
- A3Vector stop = A3Vector.fromRhoPhiZ(1., phi[k], tL);
- A3Vector v = (stop.subtract(start)).normalize();
- double p = eT[k] / Math.sqrt(1. - v.z * v.z);
- sum.add(new A4Vector(v.scale(p), 0.));
- }
-
- return sum;
- }
-
- public void draw(AWindow window, AGraphics ag, AProjection2D projection)
- {
- if(projection instanceof AProjectionVP)
- {
- drawVP(window, ag, projection);
- }
- else
- {
- super.draw(window, ag, projection);
- }
- }
-
- private void drawVP(AWindow window, AGraphics ag, AProjection2D projection)
- {
- ACoord centers=window.calculateDisplay(getUser(projection));
- int[] drawlist=centers.index;
- double eLimit=0.025;
- int numPoints=25;
- double[][][] hv=new double[2][drawlist.length][numPoints]; //circle
-
- for(int i=0; i<drawlist.length; ++i)
- {
- int list=drawlist[i];
- double e;
- e = Math.abs(eT[list]);
- int d=(int)(Math.sqrt((e/eLimit)/Math.PI));
- if(d==0) d=1;
- for(int j=0; j<numPoints; j++)
- {
- hv[0][i][j]=centers.hv[0][0][i]+d*Math.cos(Math.PI*2*j/(numPoints-1));
- hv[1][i][j]=centers.hv[1][0][i]+d*Math.sin(Math.PI*2*j/(numPoints-1));
- }
- }
- ag.draw(new ACoord(hv, drawlist, this, ACoord.POLYLINES));
- }
-
- protected ACoord getVPUser()
- {
- makeDrawList();
- double[] h = new double[numDraw];
- double[] v = new double[numDraw];
- int[] index=new int[numDraw];
-
- for(int i=0; i<numDraw; i++)
- {
- int list=listdl[i];
- h[i]=eta[list];
- v[i]=Math.toDegrees(phi[list]);
- index[i]=list;
- }
- return new ACoord(h, v, index, this).includePhiWrapAround("VP");
- }
-
- protected ACoord getYXUser()
- {
- makeDrawList();
- double[][][] hv = new double[2][numDraw][4];
- int[] index = new int[numDraw];
-
- double dphi = Math.toRadians(0.5);
- for(int i=0; i<numDraw; i++)
- {
- int list = listdl[i];
- double phiPlus = phi[list] + dphi;
- double phiMinus = phi[list] - dphi;
- double cosPlus = Math.cos(phiPlus);
- double sinPlus = Math.sin(phiPlus);
- double cosMinus = Math.cos(phiMinus);
- double sinMinus = Math.sin(phiMinus);
-
- // Rho range of LAr Detector (EM) is about between [148.175, 198.47]
- // Rho range of TILE Detector (Had) is about between [229, 386]
- double rhoMax = 380;
- double rhoMinus = 155;
-
- double maxEnergy = parameterStore.get("Projection", "EnergyMax").getD();
- double rhoPlus = rhoMax;
- if(Math.abs(eT[list]) < maxEnergy)
- rhoPlus = rhoMinus + (rhoMax - rhoMinus) * Math.abs(eT[list]) / maxEnergy;
-
- // 4 corners of the cell area
- // x0, y0
- hv[0][i][0] = rhoMinus * cosPlus;
- hv[1][i][0] = rhoMinus * sinPlus;
- // x1, y1
- hv[0][i][1] = rhoPlus * cosPlus;
- hv[1][i][1] = rhoPlus * sinPlus;
- // x2, y2
- hv[0][i][2] = rhoPlus * cosMinus;
- hv[1][i][2] = rhoPlus * sinMinus;
- // x3, y3
- hv[0][i][3] = rhoMinus * cosMinus;
- hv[1][i][3] = rhoMinus * sinMinus;
-
- index[i] = list;
- }
- return new ACoord(hv, index, this, ACoord.POLYGONS);
- }
-
- protected ACoord getFRUser()
- {
- return getYXUser().convertYXToFR().includePhiWrapAround("FR");
- }
-
- protected ACoord getRZUser()
- {
- makeDrawList();
- double[][][] hv = new double[2][numDraw][4];
- int[] index = new int[numDraw];
-
- double dtheta = Math.toRadians(0.5);
- for(int i=0; i<numDraw; i++)
- {
- int list = listdl[i];
- double phiMid = Math.toRadians(parameterStore.get("RZ", "Phi").getD());
- double phiDiff = Math.abs(phi[list]-phiMid);
- double rSign;
- if (phiDiff > Math.PI/2. && phiDiff <= 3*Math.PI/2.)
- rSign = -1;
- else
- rSign = 1;
-
- // calculate theta based on the eta value
- double theta = Math.atan(Math.exp(-Math.abs(eta[list]))) * 2.0;
- if ((eta[list] > 0.) && (rSign == -1))
- theta = 2 * Math.PI - theta;
- else if ((eta[list] < 0.) && (rSign == -1))
- theta += Math.PI;
- else if ((eta[list] < 0.) && (rSign == 1))
- theta = Math.PI - theta;
-
- double thetaPlus = theta + dtheta;
- double thetaMinus = theta - dtheta;
- double cosPlus = Math.cos(thetaPlus);
- double sinPlus = Math.sin(thetaPlus);
- double cosMinus = Math.cos(thetaMinus);
- double sinMinus = Math.sin(thetaMinus);
-
- // decide the region based on the theta value
- final byte LAR = 0;
- final byte LAR_ENDCAP = 1;
- final byte FCAL_EM = 2;
- byte region = LAR;
- // hard-coded value is based on the values in AGeometry.xml
- if(Math.abs(Math.tan(theta)) >= 0.0778 && Math.abs(Math.tan(theta)) < 0.4828)
- region = LAR_ENDCAP;
- else if(Math.abs(Math.tan(theta)) < 0.0778)
- region = FCAL_EM;
-
- double radiusMinus = 0.;
- switch(region)
- {
- // use fixed rho/z to determine the lower radius value
- case LAR:
- radiusMinus = 155 / Math.abs(Math.sin(theta));
- break;
- case LAR_ENDCAP:
- radiusMinus = 380 / Math.abs(Math.cos(theta));
- break;
- case FCAL_EM:
- radiusMinus = 470 / Math.abs(Math.cos(theta));
- break;
- }
- double radiusMax = radiusMinus + 200;
- double maxEnergy = parameterStore.get("Projection", "EnergyMax").getD();
- double radiusPlus = radiusMax;
- if(Math.abs(eT[list]) < maxEnergy)
- radiusPlus = radiusMinus + (radiusMax - radiusMinus) * Math.abs(eT[list]) / maxEnergy;
-
- // 4 corners of the cell area
- // x0, y0
- hv[0][i][0] = radiusMinus * cosPlus;
- hv[1][i][0] = radiusMinus * sinPlus;
- // x1, y1
- hv[0][i][1] = radiusPlus * cosPlus;
- hv[1][i][1] = radiusPlus * sinPlus;
- // x2, y2
- hv[0][i][2] = radiusPlus * cosMinus;
- hv[1][i][2] = radiusPlus * sinMinus;
- // x3, y3
- hv[0][i][3] = radiusMinus * cosMinus;
- hv[1][i][3] = radiusMinus * sinMinus;
-
- index[i] = list;
- }
- return new ACoord(hv, index, this, ACoord.POLYGONS);
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/data/ACompositeParticleData.java b/graphics/AtlantisJava/src/atlantis/data/ACompositeParticleData.java
deleted file mode 100755
index 5537e5b0331..00000000000
--- a/graphics/AtlantisJava/src/atlantis/data/ACompositeParticleData.java
+++ /dev/null
@@ -1,114 +0,0 @@
-package atlantis.data;
-
-import atlantis.event.*;
-import atlantis.globals.AGlobals;
-import atlantis.utils.AHashMap;
-import atlantis.utils.AMath;
-
-/**
- * Reconstructed CompositeParticle
- */
-public class ACompositeParticleData extends AAODData
-{
- private int[] pdgId;
- private float[] charge;
- private String[] label;
- private String[] typeEV;
-
- ACompositeParticleData(AHashMap p, AEvent e)
- {
- super(p,e);
- pdgId = p.getUnsureIntArray("pdgId");
- charge=p.getUnsureFloatArray("charge");
- label=p.getStringArray("label");
- typeEV=p.getStringArray("typeEV");
- }
-
- public String getParameterGroup()
- {
- return "CompositeParticle";
- }
-
- @Override
- public String getName()
- {
- return "CompositeParticle";
- }
-
- public int getPdgId(int index)
- {
- return pdgId[index];
- }
-
- public float getCharge(int index)
- {
- return charge[index];
- }
-
- public String getLabel(int index)
- {
- return label[index];
- }
-
- public String getTypeEV(int index)
- {
- return typeEV[index];
- }
-
- public String getHitInfo(int index)
- {
- int simpleOutput = AGlobals.instance().getSimpleOutput();
- if(simpleOutput>0){
- String output = getNameScreenName()+" index: " + index;
- if(simpleOutput==1 || simpleOutput==3)
- output+= "\n PT="+String.format("%.3f",pT[index])+" GeV\n "+
- AMath.ETA+" = "+String.format("%.3f",eta[index])+"\n "+
- AMath.PHI+" = "+String.format("%.3f",Math.toDegrees(phi[index]))+AMath.DEGREES;
- if(simpleOutput==2 || simpleOutput==3)
- output+= "\n Px="+String.format("%.3f",pT[index]*Math.cos(phi[index]))+" GeV "+
- "\n Py="+String.format("%.3f",pT[index]*Math.sin(phi[index]))+" GeV "+
- "\n Pz="+String.format("%.3f",pT[index]*Math.sinh(eta[index]))+" GeV ";
- return output;
- }
-
- String k = this.getStoreGateKey();
- String sgKey = k != null ? k : "n/a";
- StringBuffer msg = new StringBuffer(getNameScreenName());
- msg.append(" = ");
- msg.append(id[index]);
- msg.append("\n storegate key: ");
- msg.append(sgKey);
- msg.append("\n PT = ");
- msg.append(String.format("%.3f",pT[index]));
- msg.append(" GeV\n P = ");
- msg.append(String.format("%.3f",Math.abs(pT[index]/Math.cos(AMath.lambda(eta[index])))));
- msg.append(" GeV\n ");
- msg.append(AMath.ETA);
- msg.append(" = ");
- msg.append(String.format("%.3f",eta[index]));
- msg.append("\n ");
- msg.append(AMath.PHI);
- msg.append(" = ");
- msg.append(String.format("%.3f",Math.toDegrees(phi[index])));
- msg.append(AMath.DEGREES);
- msg.append(" (" + String.format("%.3f",phi[index]) + " rad)");
-
- if (charge != null)
- {
- msg.append("\n Charge = ");
- msg.append(charge[index]);
- }
- if(pdgId != null)
- {
- if(pdgId[index]!=0)
- msg.append("\n Type = " + APDGTable.getName(pdgId[index]) + " (type code " + pdgId[index] + ")" );
- else
- msg.append("\n Type = unknown (type code " + pdgId[index] + ")" );
- }
- msg.append("\n TypeEV = " + typeEV[index]);
- if (label != null)
- msg.append("\n Label = " + label[index]);
- return msg.toString();
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/data/ADHelix.java b/graphics/AtlantisJava/src/atlantis/data/ADHelix.java
deleted file mode 100755
index 6e1228528da..00000000000
--- a/graphics/AtlantisJava/src/atlantis/data/ADHelix.java
+++ /dev/null
@@ -1,539 +0,0 @@
-package atlantis.data;
-
-import java.awt.geom.Point2D;
-import java.util.Vector;
-import java.awt.Rectangle;
-
-import atlantis.canvas.AWindow;
-import atlantis.event.AEvent;
-import atlantis.event.AEventManager;
-import atlantis.graphics.ACoord;
-import atlantis.parameters.APar;
-import atlantis.parameters.AParameter;
-import atlantis.parameters.AParameterUtilities;
-import atlantis.projection.AProjection2D;
-import atlantis.projection.AProjection3D;
-import atlantis.projection.AProjectionVP;
-import atlantis.projection.AProjectionXZ;
-import atlantis.utils.ALogger;
-import atlantis.utils.AMath;
-
-/**
- * Helix in a format suitable for drawing given as a circle with
- * centre point and radius etc.
- *
- * phi is the angle seen from the primary vertex
- * a = alpha = the angle as seen for the center of the circle
- *
- */
-public class ADHelix
-{
- private final static ALogger logger = ALogger.getLogger(ADHelix.class);
-
- // parameters used internally
- private static final APar parameterStore = APar.instance();
- private static final AParameter rToPar = parameterStore.get("RTr", "RadiusTr");
- private static final AParameter lToPar = parameterStore.get("RTr", "LineTr");
- private static final AParameter zToPar = parameterStore.get("RTr", "ZTr");
- private static final int callDepthCut = parameterStore.get("RTr", "CallDepth").getI();;
-
- /** The associated helix object. */
- public final AHelix helix;
-
- // description of helix
- private final double rC, xC, yC, ch, a0, x0, y0, z0, bz, cosA0, sinA0;
- // position along helix
- private final double aStart, aEnd;
-
- /** Attempt to encapsulate the "current position" variables. */
- private static class HelixPoint {
- double x, y, z, rho, phi;
- }
-
- private double startPhi; // the phi value of starting point of "v"
- // TODO: Would prefer this not to be part of the state of the helix object.
- private boolean startMark; // true when calculating start point, false otherwise
-
- ADHelix(AOldHelix h) {
- this(new AHelix(h));
- }
-
- ADHelix(AHelix h)
- {
- helix = h;
- double[] perigee = h.getPar(); // d0, z0, phi0, cotanTheta, q/pT
-
- AParameter curvatureParameter = parameterStore.get("Event", "Curvature");
- if (curvatureParameter != null) {
- rC = curvatureParameter.getD() / Math.abs(perigee[4]);
- } else {
- rC = (100/0.6) / Math.abs(perigee[4]);
- }
- ch = AMath.getSign(perigee[4]);
- a0 = Math.toDegrees(perigee[2]) + ch * 90.;
- double a0Rad = Math.toRadians(a0);
- cosA0 = Math.cos(a0Rad);
- sinA0 = Math.sin(a0Rad);
- z0 = perigee[1];
- double d0 = perigee[0];
- double signD0 = ch;
- d0 *= signD0;
- x0 = d0 * cosA0;
- y0 = d0 * sinA0;
- double SD0 = 1.;
- double SRC = 1.;
- double r0 = SD0 * d0 - SRC * rC;
- xC = r0 * cosA0;
- yC = r0 * sinA0;
- bz = rC * Math.toRadians(perigee[3]);
- double rTo = rToPar.getD();
- //Check if track is limited by end vertex
- if ( helix.getRhoEndVertex() > 0. )
- rTo = Math.min(rTo,helix.getRhoEndVertex());
- double zTo = zToPar.getD();
- /*******************************************************************************/
- //Adrian Vatchinsky, Andy Haas (NYU)
- //Import the coordinates of the primary vertex in order to calculate new starting angle
- AEventManager eventManager = AEventManager.instance();
- AEvent currentEvent = eventManager.getCurrentEvent();
- if (helix.getRho(helix.getAlphaMin())!=0 || currentEvent==null) { // FIXME: doubles compared for equality
- aStart = helix.getAlphaMin(); // old, DCA to 0,0
- } else { // new, DCA to PV
- double[] primaryVertex = currentEvent.getPrimaryVertex();
- double xV = primaryVertex[0]; double yV = primaryVertex[1];
- aStart = helix.getAlphaMin() + ch*Math.toDegrees(Math.atan2(yC,xC)-Math.atan2(yC-yV,xC-xV));
- }
- /*******************************************************************************/
- HelixPoint point = pointAt(aStart);
- // don't draw tracks starting outside the tracking region
- if(Math.abs(point.rho) > rTo || Math.abs(point.z) > zTo)
- {
- this.aEnd = aStart;
- return;
- }
- //Calculate max phi angle -> no track can have more than 180 deg
- double aEndMax = Math.min(aStart + 180., 180.);
- //Also the track should not stick out of the rTo zylinder
- double aEndR = intersectWithRadialCylinder(rTo, aStart, aEndMax);
- // nor should it go beyond the max. z-extension
- double aEndZ = intersectWithZPlanes(zTo, aStart, aEndMax); // or beyond the end-vertex radius, if given
- double aEndTmp = Math.min(aEndMax, aEndR);
- if(aEndZ > aStart) aEndTmp = Math.min(aEndTmp, aEndZ);
- this.aEnd = Math.min(aEndTmp, aEndMax);
- }
-
-
- // calculate phi on track at intersection
- // Cylinder is infinite in Z direction
- public double intersectWithRadialCylinder(double rCyl, double aStart,
- double aEnd)
- {
- if(rC <= 0.) return aStart;
- double r0 = Math.sqrt(xC * xC + yC * yC);
- double bb = (rCyl * rCyl - rC * rC - r0 * r0) / (2. * rC * r0);
- double rhoStart = getRho(aStart);
- double rhoEnd = getRho(aEnd);
- if(rCyl >= rhoStart && rCyl >= rhoEnd) return aEnd;
- if(rCyl <= rhoStart && rCyl <= rhoEnd) return aStart;
- if(Math.abs(bb) > 1.)
- {
- // needs to be understood better (Hans)
- // event file: acr_muontrack_problem_event.xml
- logger.warn("Bug in ADHelix " + rCyl + " " + rhoStart + " " + rhoEnd);
- return aEnd;
- }
- double cc = Math.toDegrees(Math.acos(bb));
- if(Math.abs(cc) > 360)
- throw new Error("error in cc in dhelix");
- double gA = Math.toDegrees(Math.atan2(yC, xC));
- double a1 = ch * (a0 - gA + cc);
- double a2 = ch * (a0 - gA - cc);
- if(a1 < 0.) a1 += 360.;
- if(a2 < 0.) a2 += 360.;
- if(a1 >= 360.) a1 -= 360.;
- if(a2 >= 360.) a2 -= 360.;
- return Math.min(a1, a2);
- }
-
-
- // calculate phi on track at intersection
- public double intersectWithZPlanes(double zCyl, double aStart, double aEnd)
- {
- double zMin = 20.;
- double aZ = aEnd;
- if(zCyl >= zMin && bz != 0.)
- {
- double aZPlus = (zCyl - z0) / bz;
- double aZMinus = ( -zCyl - z0) / bz;
- if(aZPlus < aZ && aZPlus > aStart) aZ = aZPlus;
- if(aZMinus < aZ && aZMinus > aStart) aZ = aZMinus;
- }
- return aZ;
- }
-
-
- // calculate phi on track at intersection
- // cylinder finite in Z
- public double intersectWithCylinder(boolean useR, double rCyl, boolean useZ,
- double zCyl)
- {
- double aStart = 0.;
- double aEndMax = 180.;
- double zMin = 20.;
- double aEndR = 0.;
- if(useR)
- aEndR = intersectWithRadialCylinder(rCyl, aStart, aEndMax);
- double aEndZ = 0.;
- if(useZ && zCyl >= zMin && bz != 0.)
- {
- aEndZ = intersectWithZPlanes(zCyl, aStart, aEndMax);
- return Math.min(aEndR, aEndZ);
- }
- else
- return aEndR;
- }
-
-
- // a... angle in deg starting with 0 meaning point of closest approach
- private HelixPoint pointAt(double a)
- {
- HelixPoint point = new HelixPoint();
- double aRad = Math.toRadians(a0 - ch * a);
- point.x = x0 + rC * (Math.cos(aRad) - cosA0);
- point.y = y0 + rC * (Math.sin(aRad) - sinA0);
- point.z = z0 + bz * a;
- double[] primaryVtx = AParameterUtilities.getPrimaryVertex();
- double dx = point.x - primaryVtx[0];
- double dy = point.y - primaryVtx[1];
- point.rho = Math.sqrt(dx * dx + dy * dy);
- double phi0 = Math.toDegrees(Math.atan2(dy, dx));
- double phiMid2 = parameterStore.get("RZ", "Phi").getD();
- point.phi = AMath.nearestPhiDegrees(phi0,phiMid2);
- return point;
- }
-
-
- // s1 and s2 are the extreme values of phi
- // used to avoid tracks being drawn with phi discontinuity
- // in phi projections
- // = FiMid in atlantis fortran ask Hans Drevermann
- public double setPhiStart(double s1, double s2)
- {
- double phi1 = getPhi(s1);
- double phi2 = getPhi(s2);
- double phiM = getPhi((s1 + s2) / 2);
- // doesn't work for all tracks but for most
- if(Math.abs(phi1 - phi2) > 180. || Math.abs(phi1 - phiM) > 180. ||
- Math.abs(phi2 - phiM) > 180.)
- {
- if(phi1 - phiM > 180.) phi1 -= 360.;
- if(phi2 - phiM > 180.) phi2 -= 360.;
- if(phi1 - phiM < -180.) phi1 += 360.;
- if(phi2 - phiM < -180.) phi2 += 360.;
-
- // must be something wrong here, phiM is the same using the
- // following code, then why use if ... else ...
- if(phi1 < phiM && phiM < phi2)
- phiM = (phi1 + phi2) / 2.;
- else if(phi1 > phiM && phiM > phi2)
- phiM = (phi1 + phi2) / 2.;
- else
- {
- phiM = (phi1 + phi2) / 2.;
- }
- }
- if(phiM > 360.)
- phiM -= 360.;
- if(phiM < 0.)
- phiM += 360.;
- return phiM;
- }
-
-
- public double getAStart()
- {
- return aStart;
- }
-
-
- public double getAEnd()
- {
- return aEnd;
- }
-
-
- public ACoord getYXPoint(double a)
- {
- HelixPoint point = pointAt(a);
- return new ACoord(point.x, point.y, -1);
- }
-
-
- public ACoord getRZPoint(double a)
- {
- HelixPoint point = pointAt(a);
- double phiMid2 = Math.toRadians(parameterStore.get("RZ", "Phi").getD());
- double phiDiff = Math.abs(Math.toRadians(point.phi) - phiMid2);
- if(phiDiff < Math.PI / 2. || phiDiff > 3 * Math.PI / 2.)
- return new ACoord(point.z, point.rho, -1);
- else
- return new ACoord(point.z, -point.rho, -1);
- }
-
-
- public ACoord get3DPoint(double a)
- {
- HelixPoint point = pointAt(a);
- double[] point3D = {point.x,point.y,point.z};
- point3D = AProjection3D.getRotated(point3D);
- return new ACoord(point3D[0], point3D[1], -1);
- }
-
-
- public double[] get3DPointAsArray(double a)
- {
- HelixPoint point = pointAt(a);
- double[] point3D = new double[] {point.x, point.y, point.z };
- point3D = AProjection3D.getRotated(point3D);
- return point3D;
- }
-
-
- public ACoord getXZPoint(double a)
- {
- HelixPoint point = pointAt(a);
- double phiC = AProjectionXZ.getPhi();
- return new ACoord(point.z, point.rho * Math.cos(Math.toRadians(point.phi - phiC)), -1);
- }
-
-
- public ACoord getYZPoint(double a)
- {
- HelixPoint point = pointAt(a);
- double phiC = AProjectionXZ.getPhi();
- return new ACoord(point.z, point.rho * Math.sin(Math.toRadians(point.phi - phiC)), -1);
- }
-
-
- public ACoord getFZPoint(double a)
- {
- HelixPoint point = pointAt(a);
- double temp = Math.toDegrees(AParameterUtilities.getPhiStereo(point.rho, Math.toRadians(point.phi), point.z));
- return new ACoord(point.z, temp, -1);
- }
-
-
- public ACoord getFRPoint(double a)
- {
- HelixPoint point = pointAt(a);
- double temp = Math.toDegrees(AParameterUtilities.getPhiStereo(point.rho, Math.toRadians(point.phi), point.z));
- return new ACoord(point.rho, temp, -1);
- }
-
-
- public ACoord getVPPoint(double a, int sign)
- {
- HelixPoint point = pointAt(a);
- if(startMark) // start point
- {
- startPhi = point.phi; // phi is between 0 and 360
- }
- else
- {
- point.phi = AMath.nearestPhiDegrees(point.phi, startPhi);
- }
- return new ACoord(AParameterUtilities.eta(point.z, point.rho) +
- sign * AProjectionVP.getDeltaEta(point.rho, point.z), point.phi, -1);
- }
-
-
- public ACoord getLEGOPoint(double a)
- {
- //added by Mark Stockton
- HelixPoint point = pointAt(a);
- double temp = Math.toDegrees(AParameterUtilities.getPhiStereo(point.rho, Math.toRadians(point.phi), point.z));
- return new ACoord(AParameterUtilities.eta(point.z, point.rho), temp, -1);
- }
-
-
- public double getPhi(double a)
- {
- HelixPoint point = pointAt(a);
- return point.phi;
- }
-
-
- public double getEta(double a)
- {
- HelixPoint point = pointAt(a);
- return AParameterUtilities.eta(point.z, point.rho);
- }
-
-
- private double getRho(double a)
- {
- HelixPoint point = pointAt(a);
- return point.rho;
- }
-
-
- /** Draw helix in display space in an iterative manner. */
- public ACoord drawHelix(AWindow window, AProjection2D projection, double s1, double s2)
- {
- Vector<Point2D.Double> pointsOnHelix = new Vector<Point2D.Double>(100);
- double dPrevious = 999.;
- int callDepth = 0;
- // get the point at the beginning and end of the helix, defined by the phi-values (s1,s2)
- startMark = true;
- ACoord d1 = window.calculateDisplay(projection.getUserPoint(this, s1));
- double h1 = d1.hv[0][0][0];
- double v1 = d1.hv[1][0][0];
- startMark = false;
- ACoord d2 = window.calculateDisplay(projection.getUserPoint(this, s2));
- double h2 = d2.hv[0][0][0];
- double v2 = d2.hv[1][0][0];
- pointsOnHelix.add(new Point2D.Double(h1, v1));
- // We are simply adding points here, in the end the helix is drawn as a polyline
- drawHelix(pointsOnHelix, window, projection, s1, h1, v1, s2, h2, v2,
- dPrevious, callDepth);
- int numPoints;
- if(projection instanceof AProjectionVP)
- {
- numPoints = pointsOnHelix.size();
- }
- else
- {
- numPoints = pointsOnHelix.size() + 1; // add 1 to add a point for the line
- }
- double[][][] hv = new double[2][1][numPoints];
- int[] index = new int[1];
- Point2D.Double p;
- if(projection instanceof AProjectionVP)
- {
- for(int k = 0; k < numPoints; ++k)
- {
- p = (Point2D.Double) pointsOnHelix.elementAt(k);
- hv[0][0][k] = p.getX();
- hv[1][0][k] = p.getY();
- }
- }
- else
- {
- for(int k = 0; k < numPoints - 1; ++k)
- {
- p = (Point2D.Double) pointsOnHelix.elementAt(k);
- hv[0][0][k] = p.getX();
- hv[1][0][k] = p.getY();
- } // first attempt for line...
- if(numPoints > 2)
- {
- double dx = hv[0][0][numPoints - 2] - hv[0][0][numPoints - 3];
- double dy = hv[1][0][numPoints - 2] - hv[1][0][numPoints - 3];
- double x0 = hv[0][0][numPoints - 2] - hv[0][0][0];
- double y0 = hv[1][0][numPoints - 2] - hv[1][0][0];
-
- // InDet -> Track -> Rho Track linearly is 0 by default
- // and the value is meant beyond Rho Track as Helix parameter,
- // hence rToPar + lToPar is used instead of former lToPar only
- double dtopar = ( (rToPar.getD() + lToPar.getD()) / rToPar.getD()) *
- Math.sqrt(x0 * x0 + y0 * y0);
- double cophi = dx / Math.sqrt(dx * dx + dy * dy);
- double siphi = dy / Math.sqrt(dx * dx + dy * dy);
- double addl = Math.sqrt((y0 * siphi + x0 * cophi) *
- (y0 * siphi + x0 * cophi) -
- x0 * x0 - y0 * y0 + dtopar * dtopar);
- double addlen = Math.min(Math.abs( -(y0 * siphi + x0 * cophi) +
- addl),
- Math.abs( -(y0 * siphi + x0 * cophi) -
- addl));
- hv[0][0][numPoints - 1] = x0 + addlen * cophi + hv[0][0][0];
- hv[1][0][numPoints - 1] = y0 + addlen * siphi + hv[1][0][0];
- }
- }
- return new ACoord(hv, index);
- }
-
-
- /** Called recursively. */
- private void drawHelix(Vector<Point2D.Double> pointsOnHelix, AWindow window, AProjection2D projection,
- double s1, double h1, double v1, double s2, double h2, double v2,
- double dPrevious, int callDepth)
- {
- double D_MAX = 1.;
- double h21 = h2 - h1;
- double v21 = v2 - v1;
- // nothing left to draw
- if(h21 == 0. && v21 == 0.)
- return;
- // calculate midpoint
- double sM = 0.5 * (s1 + s2);
- ACoord dispM = window.calculateDisplay(projection.getUserPoint(this, sM));
- double hM = dispM.hv[0][0][0];
- double vM = dispM.hv[1][0][0];
-
- // For speed reasons we make sure we aren't doing a lot of subdivison
- // on helix segments outside the view area
- boolean isinview = true;
-
- if (callDepth > 2) {
- // Check if bounding box of segment is on the screen anywhere
- // Don't try this until we've divided a few times just in case we
- // have a really curly helix to deal with
- Rectangle wdim = window.getCurrDisp();
-
- int left = (int)h1;
- int top = (int)v1;
- int width = (int)(h2 - h1);
- int height = (int)(v2 - v1);
-
- // Make sure the box isn't upside down or zero in size as this
- // seemed to be causing a few problems
- if (width < 0) { left += width; width = -width; }
- if (height < 0) { top += height; height = -height; }
- if (width == 0) { width = 1; }
- if (height == 0) { height = 1; }
-
- Rectangle bound = new Rectangle(left, top, width, height);
-
- if (!wdim.intersects(bound)) {
- // Prevent any further sub-division
- isinview = false;
- }
- }
-
- // calculate distance of midpoint from straight line approximation
- double hM1 = hM - h1;
- double vM1 = vM - v1;
- double temp = (v21 * hM1 - h21 * vM1);
- double dM = temp * temp / (v21 * v21 + h21 * h21);
- // this iteration and previous one within tolerance
- if(dPrevious < D_MAX && dM < D_MAX)
- {
- pointsOnHelix.add(new Point2D.Double(h2, v2));
- }
- else
- {
- if(callDepth < callDepthCut && isinview)
- {
- // split track in two and iterate
- drawHelix(pointsOnHelix, window, projection, s1, h1, v1, sM, hM,
- vM, dM, callDepth + 1);
- drawHelix(pointsOnHelix, window, projection, sM, hM, vM, s2, h2,
- v2, dM, callDepth + 1);
- }
- else
- {
- pointsOnHelix.add(new Point2D.Double(hM, vM));
- pointsOnHelix.add(new Point2D.Double(h2, v2));
- }
- }
- }
-
- public double getxC() {
- return xC;
- }
-
- public double getyC() {
- return yC;
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/data/AETMisData.java b/graphics/AtlantisJava/src/atlantis/data/AETMisData.java
deleted file mode 100644
index 2bba9e11185..00000000000
--- a/graphics/AtlantisJava/src/atlantis/data/AETMisData.java
+++ /dev/null
@@ -1,562 +0,0 @@
-package atlantis.data;
-
-import atlantis.event.AData;
-import atlantis.canvas.AWindow;
-import atlantis.event.AEvent;
-import atlantis.globals.AGlobals;
-import atlantis.graphics.ACoord;
-import atlantis.graphics.AGraphics;
-import atlantis.parameters.AParameter;
-import atlantis.projection.AProjection2D;
-import atlantis.projection.AProjectionVP;
-import atlantis.projection.AProjectionYX;
-import atlantis.utils.AAtlantisException;
-import atlantis.utils.AHashMap;
-import atlantis.utils.AMath;
-
-import java.awt.Stroke;
-import java.awt.BasicStroke;
-import java.awt.geom.Point2D;
-
-/**
- * AETMisData - Missing ET class implementation. Although it is always
- * supposed that there will be only 1 item of the datatype, it's now done
- * generically as a normal datatype (assuming there is numData items, this
- * numData shall always be 1 for ETMis)
- */
-public class AETMisData extends AData {
- // data read in from the event file
-
- protected float[] et;
- protected float[] etx;
- protected float[] ety;
- // calculated data
- protected float[] sumet;
- protected float[] phi; // in radians
- protected final int YX_NUMPOINTS = 200;
-
- AETMisData(AHashMap p, AEvent e) throws AAtlantisException {
- super(p, e);
-
- sumet = p.getFloatArray("et");
- etx = p.getFloatArray("etx");
- ety = p.getFloatArray("ety");
-
- et = new float[numData];
- phi = new float[numData];
- for (int i = 0; i < numData; i++) {
- et[i] = (float) Math.sqrt(etx[i] * etx[i] + ety[i] * ety[i]);
-
- phi[i] = (float) Math.atan2(ety[i], etx[i]);
- if (phi[i] < 0.0) {
- phi[i] += AMath.TWO_PI;
- }
- }
-
- } // AETMisData() -------------------------------------------------------
-
- /**
- * Assuming there is only one item in the ETMis datatype which shall
- * always be, but the rest of the class is more generic (the 0 index)
- * @return float
- */
- public float getET() {
- return et[0];
-
- } // getET() ------------------------------------------------------------
-
- /**
- * Assuming there is only one item in the ETMis datatype which shall
- * always be, but the rest of the class is more generic (the 0 index)
- * @return float
- */
- public float getETx() {
- return etx[0];
-
- } // getETx() -----------------------------------------------------------
-
- /**
- * Assuming there is only one item in the ETMis datatype which shall
- * always be, but the rest of the class is more generic (the 0 index)
- * @return float
- */
- public float getETy() {
- return ety[0];
-
- } // getETy() -----------------------------------------------------------
-
- /**
- * Assuming there is only one item in the ETMis datatype which shall
- * always be, but the rest of the class is more generic (the 0 index)
- * @return float
- */
- public float getPhi() {
- return phi[0];
-
- } // getPhi() -----------------------------------------------------------
-
- /**
- * Returns info string for picking.
- * @param index
- * @return info string
- */
- public String getHitInfo(int index) {
- int simpleOutput = AGlobals.instance().getSimpleOutput();
- if (simpleOutput > 0) {
- String output = getNameScreenName() + " index: " + index;
- if (simpleOutput == 1 || simpleOutput == 3) {
- output += "\n ET=" + String.format("%.3f", et[index]) + " GeV\n "
- + AMath.PHI + " = " + String.format("%.3f", Math.toDegrees(phi[index])) + AMath.DEGREES;
- }
- if (simpleOutput == 2 || simpleOutput == 3) {
- output += "\n Ex=" + String.format("%.3f", et[index] * Math.cos(phi[index])) + " GeV "
- + "\n Ey=" + String.format("%.3f", et[index] * Math.sin(phi[index])) + " GeV ";
- }
- return output;
- }
-
- String msg;
-
- msg = getNameScreenName() + "\n";
- msg += " storegate key: ";
- msg += (storeGateKey == null ? "n/a" : storeGateKey) + "\n";
- msg += " Sum-ET = " + String.format("%.3f", sumet[index]) + " GeV" + "\n"
- + " ET-Mis = " + String.format("%.3f", et[index]) + " GeV" + "\n"
- + " ETx-Mis = " + String.format("%.3f", etx[index]) + " GeV" + "\n"
- + " ETy-Mis = " + String.format("%.3f", ety[index]) + " GeV" + "\n"
- + " " + AMath.PHI + " = "
- + String.format("%.3f", Math.toDegrees(phi[index]))
- + AMath.DEGREES + " (" + String.format("%.3f", phi[index]) + " rad)";
-
- return msg;
-
- } // getHitInfo() -------------------------------------------------------
-
- /**
- * Info on ETMis contained in v-plot rubberband selection
- * @return String
- */
- public String getVPHitInfo() {
- makeDrawList();
- if (numDraw == 0) {
- return "";
- }
-
- double sumEt = 0.0;
- for (int i = 0; i < numDraw; i++) {
- sumEt += Math.abs(et[i]);
- }
-
- String key = getStoreGateKey();
- String msg = numDraw + " " + (key != null ? "" + key : getNameScreenName());
- msg += " ET = " + String.format("%.1f", sumEt);
- return msg;
-
- } // getVPHitInfo() -----------------------------------------------------
-
- /**
- * getParameterGroup()
- * @return parameter group
- */
- public String getParameterGroup() {
- return "ETMis";
-
- } // getParameterGroup() ------------------------------------------------
-
- public String getName() {
- return "ETMis";
-
- } // getName() ----------------------------------------------------------
-
- public String getNameScreenName() {
- return "ETMis";
-
- } // getNameScreenName() ------------------------------------------------
-
- /**
- * internalColor()
- * Implement this atlantis.event.AData method
- * Coloring of the graphical object on the canvas
- * @return number of color types
- */
- protected int internalColor() {
- int colorFunction = parameterStore.get(PARAMETER_GROUP, "ColorFunction").getI();
-
- if (colorFunction == 0) {
- colorByConstant();
- } else if (colorFunction == 1) {
- colorByIndex();
- } else if (colorFunction == 2) {
- colorByCollection();
- }
-
- return 3;
-
- } // internalColor() ----------------------------------------------------
-
-
- public void draw(AWindow window, AGraphics ag, AProjection2D projection)
- {
- //option to scale line width by energy
- Stroke origStroke = ag.getGraphics2D().getStroke();
- if(parameterStore.getUnknown("ETMis", "LineWidth").getI()==0){
- float factor=0.f;
- if(et[0]<5){
- factor=1.0f;
- }else if(et[0]<10.){
- factor=1.5f;
- }else if(et[0]<15.){
- factor=2.0f;
- }else if(et[0]<20.){
- factor=2.5f;
- }else if(et[0]<25.){
- factor=3.0f;
- }else if(et[0]<30.){
- factor=3.5f;
- }else if(et[0]<35.){
- factor=4.0f;
- }else if(et[0]<40.){
- factor=4.5f;
- }else{
- factor=5.0f;
- }
- ag.getGraphics2D().setStroke(new BasicStroke(factor));
- }
-
- if(projection instanceof AProjectionYX)
- {
- // check config whether to draw as arrow or dashed line..
- if(parameterStore.get("ETMis", "Drawas").getI() == 0) // Arrow = 0, Dashed = 1
- {
- drawArrow(window, ag, projection);
- }
- else
- {
- drawDashed(window, ag, projection);
- }
- }
- else if(projection instanceof AProjectionVP)
- {
- // Draw ETMis in VPlot...
- ACoord centers = window.calculateDisplay(getUser(projection));
- int[] drawlist = centers.index;
- double eLimit = 0.05;
- final int numPoints = 25;
- // hv will contain all the coordinates
- // [2] - x and y value
- // [drawlist.length] - should be "3" for ET Miss object by default
- // after the PhiWrap
- // [numPoints] - number of points required for drawing Et missing
- // object in V-Plot
- double[][][] hv = new double[2][drawlist.length][numPoints];
-
- for(int i = 0; i < drawlist.length; ++i)
- {
- int list = drawlist[i];
-
- int d = (int) (Math.sqrt((this.et[list] / eLimit) / Math.PI));
- if(d == 0)
- {
- d = 1;
- }
-
- for(int j = 0; j < numPoints; j++)
- {
- hv[0][i][j] = centers.hv[0][list][i] +
- d * Math.cos(Math.PI * 2 * j / (numPoints - 1));
- hv[1][i][j] = centers.hv[1][list][i] +
- d * Math.sin(Math.PI * 2 * j / (numPoints - 1));
- }
- }
- ag.draw(new ACoord(hv, drawlist, this, ACoord.DOTTED_POLYGONS));
- }
- else
- {
- super.draw(window, ag, projection);
- }
- //reset stroke if have changed to scale with energy
- if(parameterStore.getUnknown("ETMis", "LineWidth").getI()==0)
- ag.getGraphics2D().setStroke(origStroke);
- }
-
- /**
- * drawArrow()
- * Method performs the drawing of the object on the canvas as arrow.
- * @param window
- * @param ag
- * @param projection
- */
- public void drawArrow(AWindow window, AGraphics ag, AProjection2D projection)
- {
- ACoord centers = window.calculateDisplay(getUser(projection));
-
- int[] drawlist = centers.index; // draw everything in array
-
- // scale the arrowhead with zoom...
- double zoomScaling=0;
- Point2D.Double[] corners = window.getUserCorners();
- double widthx=corners[1].x-corners[0].x;
- double widthy=corners[0].y-corners[2].y;
- //average width of window
- double width=Math.sqrt(widthx*widthx+widthy*widthy);
- //calculate scaling (100 is arbitrary constant)
- zoomScaling=100/width;
- double arrowheadScale = 10+10*zoomScaling*Math.log(et[0]+1);
-
- // phiPrime represents the angle of the missingET arrow
- double phiPrime = -1*Math.atan2(ety[0],etx[0]);
-
- // arrowMain contains the start point and end point of the arrow
- double[][][]arrowMain = new double[2][drawlist.length][2];
-
- // scale arrow length with etmiss
- double arrowScale = et[0]*et[0]/250.0; //arbitrary scaling factor
- double arrowCenter = 2.02; // this sets the starting point of the arrow. 2.02 ~ edge of ID
- if (arrowScale > 8) {
- arrowScale = 8;
- }
- for (int i = 0; i < drawlist.length; i++) {
- for (int j = 0; j < 2; j++) {
- arrowMain[0][i][j] = centers.hv[0][i][0] + (arrowCenter + arrowScale * j)*(centers.hv[0][i][1]-centers.hv[0][i][0]);
- arrowMain[1][i][j] = centers.hv[1][i][0] + (arrowCenter + arrowScale * j)*(centers.hv[1][i][1]-centers.hv[1][i][0]);
- }
- }
- double[][][]arrowHead1 = new double[2][drawlist.length][2];
- double[][][]arrowHead2 = new double[2][drawlist.length][2];
- for(int i = 0; i < drawlist.length; i++)
- {
- for(int j=0;j<2;j++)
- {
- // set the points for the two parts of the arrow head
- // 2.591 and 3.691 are the factors to add to the arrow's angle for the correct arrowhead orientation...
- arrowHead1[0][i][j] = arrowMain[0][0][1] + j*(arrowheadScale*Math.cos(2.591+phiPrime));
- arrowHead1[1][i][j] = arrowMain[1][0][1] + j*(arrowheadScale*Math.sin(2.591+phiPrime));
- arrowHead2[0][i][j] = arrowMain[0][0][1] + j*(arrowheadScale*Math.cos(3.691+phiPrime));
- arrowHead2[1][i][j] = arrowMain[1][0][1] + j*(arrowheadScale*Math.sin(3.691+phiPrime));
- }
- }
- // draw arrow, 3 parts, main arrow body and two lines for arrowhead
- ag.draw(new ACoord(arrowMain, drawlist, this, ACoord.DOTTED_POLYGONS));
- ag.draw(new ACoord(arrowHead1, drawlist, this, ACoord.DOTTED_POLYGONS));
- ag.draw(new ACoord(arrowHead2, drawlist, this, ACoord.DOTTED_POLYGONS));
-
- } // drawArrow() -------------------------------------------------------------
-
- /**
- * drawDashed()
- * Method performs the drawing of the object on the canvas as a dashed line.
- * @param window
- * @param ag
- * @param projection
- */
- public void drawDashed(AWindow window, AGraphics ag, AProjection2D projection)
- {
- //Stop Etmiss being scaled by Fisheye
- boolean origStatus = parameterStore.get(projection.getName(), "FishEye").getStatus();
- parameterStore.get(projection.getName(), "FishEye").setStatus(false);
- ACoord centers = window.calculateDisplay(getUser(projection));
- if(origStatus) parameterStore.get(projection.getName(), "FishEye").setStatus(origStatus);
-
- int[] drawlist = centers.index; // draw everything in array
- // hv will contain all the the coordinates
- // [2] - x and y value
- // [numData] - should be "1" for ETMis datatype
- // [YX_NUMPOINTS] - number of points required for ET Miss object
-
- // length of drawlist should always be 1 -> only 1 iteration
- double[][][] hv = new double[2][drawlist.length][YX_NUMPOINTS];
- for(int i = 0; i < drawlist.length; i++)
- {
- for(int j = 0; j < YX_NUMPOINTS; j++)
- {
- hv[0][i][j] = centers.hv[0][i][j]; // x
- hv[1][i][j] = centers.hv[1][i][j]; // y
- }
- }
- ag.draw(new ACoord(hv, drawlist, this, ACoord.DOTTED_POLYGONS));
-
- } // drawDashed() -------------------------------------------------------------
- /**
- * getYXUser()
- * calculates coordinates for the Et missing graphical object which
- * consists of one arrowed line, i.e. one line and two smaller lines
- * forming the arrow, all together NUM_POINTS points
- * @return coordinates
- */
- protected ACoord getYXUser()
- {
- if (etx[0] == 0.f && ety[0] == 0.f) return ACoord.NO_DATA;
-
- makeDrawList(); // applycuts will be called here
-
- // Et missing graphical object consists of one dashed line from center
- // to the border of canvas, or an arrow.
-
- // hv will contain all the coordinates
- // [2] - x and y value
- // [numData] - should be "1" for ETMis datatype
- // YX_NUMPOINTS - number of points required for ET Miss object
- double[][][] hv = new double[2][numDraw][YX_NUMPOINTS];
- int[] index = new int[numDraw];
- // i counter, here should have just one item in the coordinate array
- // (index.length = 1), numDraw should be 1
- for(int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
-
- // main line (dashed)
- // to be properly done: geting border values over canvas/window
- double inc = 10000 / YX_NUMPOINTS;
- double x = Math.cos(phi[list]);
- double y = Math.sin(phi[list]);
- for(int ii = 0; ii < YX_NUMPOINTS; ii++)
- {
- hv[0][i][ii] = x * (inc * ii);
- hv[1][i][ii] = y * (inc * ii);
- }
-
- index[i] = list;
- }
- return new ACoord(hv, index, this);
-
- } // getYXUser() --------------------------------------------------------
-
- @Override
- protected ACoord getRZUser() {
- if (etx[0] == 0.f && ety[0] == 0.f) return ACoord.NO_DATA;
-
- double s = 1+Math.sqrt(et[0]);//4*parameterStore.get("ETMis", "Scale").getD();
- if (0 == s || parameterStore.get("ETMis", "Drawas").getI() == 1) {
- return ACoord.NO_DATA;
- }
- makeDrawList(); // applycuts will be called here
- double[][][] hv = new double[2][numDraw][YX_NUMPOINTS + 4];
- int[] index = new int[numDraw];
- for (int i = 0; i < numDraw; i++) {
- int list = listdl[i];
- double rhoMinus = 500;
- double rhoMax = 1500;
- double inc = 1. / YX_NUMPOINTS;
- double maxEnergy = parameterStore.get("Projection", "EnergyMax").getD();
- double rhoPlus = rhoMax;
- if (Math.abs(et[list]) < maxEnergy) {
- rhoPlus = (rhoMax - rhoMinus) * s * Math.abs(et[list]) / maxEnergy;
- }
-
- double updown = 0;
- double phiMid = Math.toRadians(parameterStore.get("RZ", "Phi").getD());
- if (phiMid > AMath.TWO_PI) {
- phiMid -= AMath.TWO_PI;
- }
- double phiDiff = Math.abs(phi[list] - phiMid);
- if (phiDiff < Math.PI / 2. || phiDiff > 3 * Math.PI / 2.) {
- updown = 1;
- } else {
- updown = -1;
- }
-
- //double y = rhoPlus*Math.cos(phiDiff);//to change with cos of phiDiff
- double y = rhoPlus * updown;//to change just by up or down
- for (int ii = 0; ii <= YX_NUMPOINTS; ii++) {
- hv[0][i][ii] = 0;
- hv[1][i][ii] = rhoMinus * updown + y * (inc * ii);
- }
- hv[0][i][YX_NUMPOINTS + 1] = rhoMinus * .1;
- hv[1][i][YX_NUMPOINTS + 1] = rhoMinus * updown + 0.8 * y;
- hv[0][i][YX_NUMPOINTS + 2] = -rhoMinus * .1;
- hv[1][i][YX_NUMPOINTS + 2] = rhoMinus * updown + 0.8 * y;
- hv[0][i][YX_NUMPOINTS + 3] = 0;
- hv[1][i][YX_NUMPOINTS + 3] = rhoMinus * updown + y;
-
- index[i] = list;
- }
- return new ACoord(hv, index, this, ACoord.POLYLINES);
-
- } // getRZUser() --------------------------------------------------------
-
- /**
- * calculate coordinates for the Et missing graphical object
- * in V-Plot (eta-phi projection)
- * @return coordinates
- */
- protected ACoord getVPUser()
- {
- if (etx[0] == 0.f && ety[0] == 0.f) return ACoord.NO_DATA;
-
- makeDrawList(); // applycuts will be called here
-
- // numDraw for ET Miss object should be 1
- double[] h = new double[numDraw];
- double[] v = new double[numDraw];
- int[] index = new int[numDraw];
- for(int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
- h[0] = 0.0; // h[0] is the eta value, ETMis always drawn in the
- // centre of VPlot - at eta 0
- v[0] = Math.toDegrees(phi[list]); // v[0] is the phi value
- index[i] = list;
- }
-
- return new ACoord(h, v, index, this).includePhiWrapAround("VP");
-
- } // getVPUser() --------------------------------------------------------
-
- /**
- * this method is defined as an abstract method in AData, so must be
- * implemented in this child class
- */
- protected void applyCuts() {
-
- // no need to cut index (always 0), and transverse momentum for ET Miss
- // assuming only 1 item in the ETMis datatype, thus index 0
- cutPhi(phi[0]);
-
- // eta value for ET Miss is 0
- cutEta(0.0f);
-
- // cut on ETMiss (default cut of 15 GeV)
- cut("CutsObjects", "ETMis", " |ETMis|", et);
-
- } // applyCuts() --------------------------------------------------------
-
- /**
- * phi cut implementation for ETMis object
- * @param phi float
- */
- protected void cutPhi(float phi) {
- AParameter par = parameterStore.get("CutsATLAS", "CutPhi");
- boolean usePhiCut = par.getStatus();
- if (usePhiCut) {
- double phiCut = Math.toRadians(Math.abs(par.getD()));
- double phiMid = Math.toRadians(
- AMath.nearestPhiDegrees(parameterStore.get("CutsATLAS", "PhiMiddle").getD()));
- double phiDiff = Math.abs(AMath.nearestPhiRadians(phi, phiMid)
- - phiMid);
-
- if (phiDiff - phiCut > 1.0e-6) {
- numDraw = 0;
- }
- }
-
- } // cutPhi() -----------------------------------------------------------
-
- /**
- * eta cut implementation for ETMis object
- * @param eta float
- */
- protected void cutEta(float eta) {
- AParameter par = parameterStore.get("CutsATLAS", "CutEta");
- boolean useEtaCut = par.getStatus();
- if (useEtaCut) {
- double etaCut = Math.abs(par.getD());
- double etaMid = parameterStore.get("CutsATLAS", "EtaMiddle").getD();
- double etaDiff = Math.abs(eta - etaMid);
- if (etaDiff - etaCut > 1.0e-6) {
- numDraw = 0;
- }
- }
-
- } // cutEta() -----------------------------------------------------------
-} // class AETMisData =======================================================
-
diff --git a/graphics/AtlantisJava/src/atlantis/data/AElectronData.java b/graphics/AtlantisJava/src/atlantis/data/AElectronData.java
deleted file mode 100755
index 29967a8fc34..00000000000
--- a/graphics/AtlantisJava/src/atlantis/data/AElectronData.java
+++ /dev/null
@@ -1,180 +0,0 @@
-package atlantis.data;
-
-import java.util.Vector;
-import atlantis.utils.A4Vector;
-
-import atlantis.event.*;
-import atlantis.globals.AGlobals;
-import atlantis.utils.AHashMap;
-import atlantis.utils.AMath;
-
-/**
- * Reconstructed Electron
- */
-public class AElectronData extends AHelixAODData
-{
- private enum isEMe { TightPP, Tight, Medium, Loose, none }
-
- private int[] isEM;
- private Vector<Enum> isEMEnum = new Vector<Enum>();
- private String[] label;
- private float[] eOverp;
- private int[] hasTrack;
-
- AElectronData(AHashMap p, AEvent e)
- {
- super(p,e);
- isEM=p.getUnsureIntArray("isEM");
- String[] isEMString=p.getUnsureStringArray("isEMString");
- eOverp = p.getUnsureFloatArray("eOverp");
- hasTrack=p.getUnsureIntArray("hasTrack");
- label=p.getUnsureStringArray("label");
-
- if(isEMString!=null)
- {
- for(String s : isEMString)
- {
- try {
- isEMEnum.add(isEMe.valueOf(s));
- }
- catch(IllegalArgumentException q) {
- isEMEnum.add(isEMe.none);
- }
- }
- }
- else
- {
- for(int i=0;i<numData;i++)
- {
- isEMEnum.add(isEMe.none);
- }
- }
- }
-
- public String getParameterGroup()
- {
- return "Electron";
- }
-
- public float geteOverp(int index)
- {
- return eOverp[index];
- }
-
- public String getisEMEnum(int index)
- {
- return isEMEnum.get(index).toString();
- }
-
- public int getisEM(int index)
- {
- return isEM[index];
- }
-
- public A4Vector get4Vector(int num, int[] list)
- {
- A4Vector sum = new A4Vector();
- for (int i = 0; i < num; ++i)
- {
- int k = list[i];
- A4Vector start = new A4Vector();
- start.setPtEtaPhiM((double)pT[k],(double)eta[k],(double)phi[k],0.00051);
- sum.add(start);
- }
-
- return sum;
- }
-
- protected void applyCuts()
- {
- super.applyCuts();
- cut("CutsObjects", "ElectronPt", " |ET|", pT);
-
- // because of the retriever bug, currently 2048 means 0 for isEM
- // remove this for block when the bug is fixed
- if(isEM != null)
- {
- for(int i=0; i<isEM.length; i++)
- {
- if(isEM[i]==2048)
- isEM[i] = 0;
- }
- }
-
- cut("CutsObjects", "ElectronisEM", " isEM", isEM);
-
- if (parameterStore.get("CutsObjects", "ElectronisEMString").getStatus())
- {
- int cutSub = parameterStore.get("CutsObjects", "ElectronisEMString").getI();
-
- cutArrayEnum(isEMEnum, cutSub, "Electron isEMString");
- }
-
- cut("CutsObjects", "ElectroneOverp", " |eOverp|", eOverp);
- if (parameterStore.get("CutsObjects", "ElectronhasTrack").getStatus() && hasTrack!=null)
- cutArray(hasTrack, 1, "hasTrack");
- }
-
- public String getHitInfo(int index)
- {
- int simpleOutput = AGlobals.instance().getSimpleOutput();
- if(simpleOutput>0){
- String output = getNameScreenName()+" index: " + index;
- if(simpleOutput==1 || simpleOutput==3)
- output+= "\n PT="+String.format("%.3f",pT[index])+" GeV\n "+
- AMath.ETA+" = "+String.format("%.3f",eta[index])+"\n "+
- AMath.PHI+" = "+String.format("%.3f",Math.toDegrees(phi[index]))+AMath.DEGREES;
- if(simpleOutput==2 || simpleOutput==3)
- output+= "\n Px="+String.format("%.3f",pT[index]*Math.cos(phi[index]))+" GeV "+
- "\n Py="+String.format("%.3f",pT[index]*Math.sin(phi[index]))+" GeV "+
- "\n Pz="+String.format("%.3f",pT[index]*Math.sinh(eta[index]))+" GeV ";
- return output;
- }
-
- String k = this.getStoreGateKey();
- String sgKey = k != null ? k : "n/a";
- StringBuffer msg = new StringBuffer(getNameScreenName());
- msg.append(" (id: " + id[index] + " index: " + index + ")");
- msg.append("\n storegate key: ");
- msg.append(sgKey);
- msg.append("\n PT = ");
- msg.append(String.format("%.3f",pT[index]));
- msg.append(" GeV\n P = ");
- msg.append(String.format("%.3f",Math.abs(pT[index]/Math.cos(AMath.lambda(eta[index])))));
- msg.append(" GeV\n ");
- msg.append(AMath.ETA);
- msg.append(" = ");
- msg.append(String.format("%.3f",eta[index]));
- msg.append("\n ");
- msg.append(AMath.PHI);
- msg.append(" = ");
- msg.append(String.format("%.3f",Math.toDegrees(phi[index])));
- msg.append(AMath.DEGREES);
- msg.append(" (" + String.format("%.3f",phi[index]) + " rad)");
-
-
- if (isEM != null)
- {
- msg.append("\n isEM = ");
- msg.append(isEM[index]);
- }
- if (label != null)
- {
- msg.append("\n label = ");
- msg.append(label[index]);
- }
- if (eOverp != null)
- {
- msg.append("\n eOverp = ");
- msg.append(eOverp[index]);
- }
- if (hasTrack != null)
- {
- msg.append("\n hasTrack = ");
- msg.append(hasTrack[index]);
- }
-
- return msg.toString();
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/data/AEmTauROIData.java b/graphics/AtlantisJava/src/atlantis/data/AEmTauROIData.java
deleted file mode 100755
index a2c8dc64699..00000000000
--- a/graphics/AtlantisJava/src/atlantis/data/AEmTauROIData.java
+++ /dev/null
@@ -1,34 +0,0 @@
-package atlantis.data;
-
-import atlantis.event.*;
-import atlantis.utils.AHashMap;
-
-/**
- *
- * Em Tau Region Of Interest
- *
- * @author Zdenek Maxa, Qiang Lu
- */
-public class AEmTauROIData extends AROIData
-{
- AEmTauROIData(AHashMap p, AEvent e)
- {
- super(p,e);
- } // AEmTauROIData() ----------------------------------------------------
-
- public String getParameterGroup()
- {
- return "EmTauROI";
- }
-
- public String getName()
- {
- return "EmTauROI";
- }
-
- public String getNameScreenName()
- {
- return "EmTauROI";
- }
-
-} // class AEmTauROIData ====================================================
diff --git a/graphics/AtlantisJava/src/atlantis/data/AEventFromXML.java b/graphics/AtlantisJava/src/atlantis/data/AEventFromXML.java
deleted file mode 100755
index b89196931d3..00000000000
--- a/graphics/AtlantisJava/src/atlantis/data/AEventFromXML.java
+++ /dev/null
@@ -1,786 +0,0 @@
-package atlantis.data;
-
-import java.io.InputStream;
-import java.lang.reflect.Constructor;
-import java.lang.reflect.InvocationTargetException;
-
-import javax.xml.parsers.SAXParserFactory;
-
-import org.xml.sax.Attributes;
-import org.xml.sax.InputSource;
-import org.xml.sax.SAXException;
-import org.xml.sax.XMLReader;
-import org.xml.sax.helpers.DefaultHandler;
-
-import atlantis.event.AData;
-import atlantis.event.AEvent;
-import atlantis.event.AEventSource.ReadEventException;
-import atlantis.globals.AGlobals;
-import atlantis.output.ALogInterface;
-import atlantis.output.AOutput;
-import atlantis.utils.AHashMap;
-import atlantis.utils.AMath;
-import atlantis.utils.AAtlantisException;
-import atlantis.utils.ALogger;
-import atlantis.utils.AUtilities;
-import atlantis.utils.xml.AArrayParser;
-import atlantis.utils.xml.AFloatArrayParser;
-import atlantis.utils.xml.AIntArrayParser;
-import atlantis.utils.xml.AStringArrayParser;
-import atlantis.utils.xml.AXMLErrorHandler;
-import atlantis.utils.xml.AXMLErrorHandler.ErrorState;
-import java.util.Iterator;
-import javax.xml.parsers.ParserConfigurationException;
-import org.xml.sax.SAXNotRecognizedException;
-
-
-/**
- * The reader which is used to read XML Event Files. The reader function creates
- * and returns an AEvent class. Event comes with tags which are arrays of
- * numbers. These arrays are treated by xml as character strings. The conversion
- * of the character strings to arrays of number is done here.
- */
-public class AEventFromXML extends DefaultHandler {
-
- //the logger
- private final static ALogger logger = ALogger.getLogger(AEventFromXML.class);
-
- // Create an instance of this object - this makes sure the constructor is called.
- // FIXME: should not use constructor to initialize static state.
- private static final AEventFromXML instance = new AEventFromXML();
-
- //We also have our private error handler
- private static final AXMLErrorHandler xmlErrorHandler = new AXMLErrorHandler();
-
- //Parsing states at different XML levels
- private enum ParseState {
- WAITING_EVENT,
- WAITING_DATA,
- WAITING_ARRAY
- }
- private static ParseState parseState;
-
- //The XMLReader object
- private static XMLReader xmlReader;
- //The event that is being build
- private static AEvent event = null;
- //the source name
- private static String sourceName = null;
-
- //non-static parsing data members
- private AHashMap parameters = null;
- private String currentDataName = null;
- private String currentArrayName = null;
- private String currentFullName = null;
- private int arrayLength = 0;
- private int currentArraySize = 0;
- private String storeGateKey = null;
- private AArrayParser arrayParser = null;
-
- private static boolean HLTIgnoredWarning = false;
-
-
- /**
- * Constructor
- * Creates an instance of AEventFromXML. It just sets up the XML reading
- * stuff but does not do any parsing of any XML file.
- */
- private AEventFromXML() {
-
- try {
- //setup all the xml reader stuff
- SAXParserFactory factory = SAXParserFactory.newInstance();
- factory.setValidating(true);
- factory.setNamespaceAware(true);
- xmlReader = factory.newSAXParser().getXMLReader();
- xmlReader.setErrorHandler(xmlErrorHandler);
- xmlReader.setEntityResolver(this);
- xmlReader.setContentHandler(this);
- } catch (ParserConfigurationException pce){
- logger.error("Unable to initialize XML reader!", pce);
- } catch (SAXException sxe){
- logger.error("Unable to initialize XML reader!", sxe);
- }
- } // AEventFromXML() ----------------------------------------------------
-
-
- /**
- * Checks if there was an error.
- * @return true or false
- */
- private boolean hasError() {
- return (xmlErrorHandler.getErrorState() != ErrorState.NO_ERROR);
- }
-
-
- /**
- * Reads an XML event data (from files, from string converted to stream) and
- * returns the coresponding AEvent object.
- *
- * @param eventInputStream the XML data input stream.
- * @param sourceName the name of the event source that provided this data
- * @return an AEvent object containing all the data found in the file.
- * @throws ReadEventException
- */
- public static AEvent read(InputStream eventInputStream, String sourceName) throws ReadEventException {
-
- //be verbose
- logger.info("Parsing event from " + sourceName);
-
- //set the initial error state
- xmlErrorHandler.setError(ErrorState.NO_ERROR,null);
-
- //store the source Name
- AEventFromXML.sourceName = sourceName;
-
- //Try to parse input stream
- try {
- xmlReader.parse(new InputSource(eventInputStream));
- } catch (Exception e) {
- //In case of an error repackage as ReadEventException
- logger.error("Parsing exception " + e.getMessage(),e);
- throw new ReadEventException("XML parsing exception", e);
- }
-
- //Finally construct the full event (including associations, etc.)
- //Check for runtime exceptions here in case we fail to finalize the event
- try {
- event.finalizeEvent();
- } catch (RuntimeException rte) {
- //rethrow as can not read event exception
- throw new ReadEventException("Inconsistent event data",rte);
- }
-
- return event;
- }
-
- /**
- * DefaultHandler Implementation (have a look at
- * org.xml.sax.helpers.DefaultHandler for more info)
- */
- @Override
- public void startDocument() {
-
- //if we are already in error state return immediately
- if (hasError()) return;
-
- //Clean up all local variables
- event = null;
- parameters = null;
- currentDataName = null;
- currentArrayName = null;
- currentFullName = null;
- arrayLength = 0;
- currentArraySize = 0;
- storeGateKey = null;
- arrayParser = null;
-
- //Set parse state to new event
- parseState = ParseState.WAITING_EVENT;
-
- //be verbose
- logger.debug("Start parsing document");
-
- } // startDocument() ----------------------------------------------------
-
- @Override
- public void endDocument() {
-
- //if we are already in error state return immediatly
- if (hasError()) return;
-
- //be verbose
- logger.debug("Finished parsing document w/o error");
-
- }
-
- /**
- * Implementation of DefaultHandler: start a new xml element
- * @param namespaceURI the namespace
- * @param localName the local name
- * @param qName the qualified name
- * @param atts the default or specified attributes
- */
- @Override
- public void startElement(String namespaceURI, String localName,
- String qName, Attributes atts) throws SAXException {
-
- //stop here if errors have occured before
- if (hasError()) return;
-
- try {
- //Now act depending on parse state
- switch (parseState) {
-
- //Waiting for an event to begin
- case WAITING_EVENT:
- //Try to read in event data
- if (localName.equals("Event")) {
-
- //Create a new event
- event = new AEvent(atts.getValue("eventNumber"),
- atts.getValue("runNumber"),
- atts.getValue("dateTime"),
- sourceName,
- atts.getValue("lumiBlock"),
- atts.getValue("eventProperty"));
-
-
- //create a new data hashmap
- parameters = new AHashMap(15);
-
- //Advance to next parsing state
- parseState = ParseState.WAITING_DATA;
-
- } else {
- //The Event tag does not seem to be the first tag in this event
- logger.warn("Encountered tag "+localName+ " while waiting for <event/>!");
- }
- //Done waiting for event
- break;
-
- //Waiting for a data tag
- case WAITING_DATA:
-
- //Store the current object name
- currentDataName = localName;
- //Get number of entries expected here
- arrayLength = Integer.parseInt(atts.getValue("count"));
-
- // if storegate key doesn't exists as an attribute
- // at datatype, an empty string "" is retrieved (not null)
- storeGateKey = atts.getValue("storeGateKey");
- //Construct full name from datatype name and storeGateKey
- currentFullName = currentDataName + "-" + storeGateKey;
-
- // ignore data with storeGateKey containing "HLTAutoKey"
- // Its important that parseState is not set before,
- // so we arrive waiting for a new data tag when this error is cleared
- if (!AGlobals.instance().showHLTAutoKeys() && storeGateKey.indexOf("HLTAutoKey") >= 0) {
- //Set appropiate error state and continue
- xmlErrorHandler.setError(ErrorState.IGNORED_DATA, new Exception("Ignored HLTAutoKey data "+currentFullName));
- return;
- }
-
- parameters.clear();
- // add numData - number of data within the subtags,
- // extracted from count attribute
- parameters.put("numData", new Integer(arrayLength));
- parameters.put("storeGateKey", storeGateKey);
- parseState = ParseState.WAITING_ARRAY;
- break;
-
- //Waiting for an data value array
- case WAITING_ARRAY:
-
- //store name of the array we are looking at
- currentArrayName = localName;
-
- if ((atts.getValue("type") == null) ||
- (atts.getValue("multiple") == null))
- throw new SAXNotRecognizedException("No array type or multiplicity available for "+localName);
-
- String type = atts.getValue("type");
-
- //get multiplicity if needed
- float multiple = Float.parseFloat(atts.getValue("multiple"));
- currentArraySize = Math.round(arrayLength * multiple);
-
-
- //Instanciate a new array parser
- if (type.equals("FLOAT")) {
- arrayParser = new AFloatArrayParser(currentArraySize);
- } else if (type.equals("INT")) {
- arrayParser = new AIntArrayParser(currentArraySize);
- } else if (type.equals("STRING")) {
- arrayParser = new AStringArrayParser(currentArraySize);
- } else {
- throw new SAXNotRecognizedException("Invalid array type: " + type);
- }
-
- break;
-
- } // switch
- } catch (SAXNotRecognizedException sre){
- //Catch unknown array tags
- xmlErrorHandler.setError(ErrorState.INVALID_DATA,sre);
- logger.debug("Encountered invalid subtag "+localName, sre);
- } catch (Exception e) {
- //Catch any other error here:
- String msg = "Error reading file at " + currentFullName + ":" + currentArrayName;
- xmlErrorHandler.setError(ErrorState.FATAL_ERROR,e);
- logger.debug(msg, e);
- //Rethrow readevent exception with proper cause
- throw new SAXException(msg, e);
- }
-
- }
-
- /**
- * Called at the end of each tag - this is where we actually construct the data
- * @param namespaceURI - the current namespace
- * @param localName - the local element name
- * @param qName - the qualified element name
- */
- @Override
- public void endElement(String namespaceURI, String localName, String qName) throws SAXException {
-
- /**
- * Check if an error had occured reading this element
- */
- if (hasError()) {
-
- String msg = null;
-
- switch (xmlErrorHandler.getErrorState()) {
-
- case UNKNOWN_TAG:
- //Ignore unknown tags, but show an error
-
- if (parseState == ParseState.WAITING_DATA)
- msg = "Unknown or obsolete data type <" + currentDataName + "> found";
- else if (parseState == ParseState.WAITING_ARRAY)
- //rely on exception error message for this one
- msg = xmlErrorHandler.getErrorCause().getMessage();
- else
- //unknown tag at event level
- msg = "Unknown tag <" + currentDataName + "> while waiting for event.";
-
- //Clear the error state and continue
- xmlErrorHandler.setError(ErrorState.NO_ERROR, null);
- break;
-
- case INVALID_DATA:
- msg = "Invalid data encountered reading "+currentDataName;
- //Clear the error state and continue
- xmlErrorHandler.setError(ErrorState.NO_ERROR, null);
- break;
-
- case IGNORED_DATA:
-
- //Only show warning message in the LogPane once
- if (!HLTIgnoredWarning) {
- AOutput.append("\"HLTAutoKey\" data is hidden, option '-a' to see them.",
- ALogInterface.WARNING);
- //tell about each one also in the log
- logger.warn(xmlErrorHandler.getErrorCause().getMessage());
- HLTIgnoredWarning = true;
- }
-
- //Clear the error only when we reach the end of the data tag
- if (localName.equals(currentDataName))
- xmlErrorHandler.setError(ErrorState.NO_ERROR, null);
-
- break;
- }
-
- //If there was a message, show it
- if (msg != null){
- // Now show this error in the log pane and console output
- logger.warn(msg,xmlErrorHandler.getErrorCause());
- }
- //Return to parsing (if error cleared) or stop
- return;
- }
-
- /**
- * No error so far - check what we have been parsing
- */
- switch (parseState) {
-
- case WAITING_ARRAY:
-
- /**
- * End of data array - add to parameter list
- */
- if (localName.equals(currentArrayName)) {
-
- //Check for proper Array size
- if (arrayParser.getCount() != currentArraySize) {
-
- xmlErrorHandler.setError(ErrorState.INVALID_DATA, new Exception("Invalid array size"));
-
- String msg = "The number of data in <" + currentFullName + ">-<" + currentArrayName + "> is different than declared";
- logger.error(msg);
- AOutput.append("\n"+msg+"\n", ALogInterface.WARNING);
- return;
- }
- //Otherwise add to parameter list
- parameters.put(currentArrayName, arrayParser.getArray());
-
- //done with that, return
- return;
- }
-
- /**
- * End of data tag - construct object
- */
- if (localName.equals(currentDataName)) {
- try {
- // Calo and muon datatypes sometimes provide a
- // storeGateKey, thus are (incorrectly !)
- // regarded as multiple collection datatypes
- // -> remove this storeGateKey
- if ("TILE".equals(currentDataName) ||
- "LAr".equals(currentDataName) ||
- "HEC".equals(currentDataName) ||
- "FCAL".equals(currentDataName) ||
- "MBTS".equals(currentDataName) ||
- "MDT".equals(currentDataName) ||
- "CSC".equals(currentDataName) ||
- "RPC".equals(currentDataName) ||
- "TGC".equals(currentDataName)) {
- parameters.put("storeGateKey", null);
- }
-
- // RDOs originally implemented as multiple collections,
- // then changed to non-mul-col. this is for backwards
- // compatibility with events where storeGateKey is
- // provided for PixelRDO and SCTRDO
- if ("PixelRDO".equals(currentDataName) ||
- "SCTRDO".equals(currentDataName)) {
- parameters.put("storeGateKey", null);
- }
-
- checkPhiRange(parameters, currentFullName);
-
- if (currentDataName.equals("STr")) {
- event.add(new ASVxData(ASVxData.createSVx(parameters), event));
- event.add(new ASTrData(ASTrData.createSTr(parameters), event));
- event.add(new ASNPData(ASNPData.createSNP(parameters), event));
- } // STC - silicon cluster datatype
- else if (currentDataName.equals("STC")) {
- event.add(new ASiClusterData(parameters, event));
- } // SCTRDO - silicon cluster raw data object
- // discrepancy in naming STC x SCT ...
- else if (currentDataName.equals("SCTRDO")) {
- event.add(new ASiClusterRDOData(parameters, event));
- } // PixCluster - pixel cluster datatype
- else if (currentDataName.equals("PixCluster")) {
- event.add(new APixelClusterData(parameters, event));
- }
- // ETMis backwards compatibility (after ETMis collections)
- // datatypes ETMis, CaloETMis, MuonETMis - storeGateKey
- // attribute is added here
- else if (currentDataName.equals("ETMis") &&
- "".equals(storeGateKey)) {
- parameters.put("storeGateKey", "ETMis");
- event.add(new AETMisData(parameters, event));
- } else if (currentDataName.equals("CaloETMis")) {
- parameters.put("storeGateKey", "CaloETMis");
- event.add(new AETMisData(parameters, event));
- } else if (currentDataName.equals("MuonETMis")) {
- parameters.put("storeGateKey", "MuonETMis");
- event.add(new AETMisData(parameters, event));
- } // Track collections, backwards compatibility for
- // IDScan, iPat, xKal datatypes - storeGateKey attribute
- // is added here
- else if (currentDataName.equals("Track")) {
-
- String key = (String) parameters.get("storeGateKey");
- if (key != null) {
- if (key.toLowerCase().indexOf("mboy") >= 0 || key.toLowerCase().indexOf("mugirl") >=0 || key.toLowerCase().indexOf("moore") >= 0 || key.toLowerCase().indexOf("momu") >= 0 || key.toLowerCase().indexOf("muon") >= 0 || key.toLowerCase().indexOf("staco") >= 0 || key.toLowerCase().indexOf("muid") >= 0 || key.toLowerCase().indexOf("mutag") >= 0 ) {
- event.add(new AMuonTrackData(parameters, event));
- } else {
- event.add(new AInDetTrackData(parameters, event));
- }
- } else {
- int[] trackAuthor = parameters.getUnsureIntArray("trackAuthor");
- if (trackAuthor != null && trackAuthor.length > 0) {
- if ((trackAuthor[0] >= 7 && trackAuthor[0] <= 9) || (trackAuthor[0] >= 13 && trackAuthor[0] <= 17)) {
- event.add(new AMuonTrackData(parameters, event));
- } else {
- event.add(new AInDetTrackData(parameters, event));
- }
- } else {
- event.add(new AInDetTrackData(parameters, event));
- }
- }
- } else if (currentDataName.equals("IDScan")) {
- parameters.put("storeGateKey", "TrigInDetTrack");
- event.add(new AInDetTrackData(parameters, event));
- } else if (currentDataName.equals("iPat")) {
- parameters.put("storeGateKey", "iPatTrack");
- event.add(new AInDetTrackData(parameters, event));
- } else if (currentDataName.equals("xKal")) {
- parameters.put("storeGateKey", "xKalTrack");
- event.add(new AInDetTrackData(parameters, event));
- } else if (currentDataName.equals("RTr")) // old tag
- {
- parameters.put("storeGateKey", "RTrTrack");
- event.add(new AInDetTrackData(parameters, event));
- } else if (currentDataName.equals("RMTr")) // old tag
- {
- parameters.put("storeGateKey", "RMTrTrack");
- event.add(new AMuonTrackData(parameters, event));
- } // ParticleJet backwards compatibility
- else if (currentDataName.equals("ParticleJet") &&
- "".equals(storeGateKey)) {
- parameters.put("storeGateKey", "ParticleJet cone4");
- // treat PatricleJet as Jet (JetRecJet)
- event.add(new AJetData(parameters, event));
- } else if (currentDataName.equals("Jet") &&
- "".equals(storeGateKey)) {
- parameters.put("storeGateKey", "JetRecJet");
- event.add(new AJetData(parameters, event));
- } // MSeg backwards compatibility
- else if (currentDataName.equals("MSeg")) {
- parameters.put("storeGateKey", "MooreSegment");
-
- // Instead of cotan(theta) we store theta itself.
- float[] cotTheta = parameters.getFloatArray("cotTheta");
- float[] theta = new float[cotTheta.length];
- for (int i = 0; i < cotTheta.length; i++) {
- theta[i] = (float) Math.atan(1. / cotTheta[i]);
- }
- parameters.put("theta", theta);
-
- // And phi0 is now called phi
- parameters.put("phi", parameters.getFloatArray("phi0"));
-
- event.add(new AMuonSegmentData(parameters, event));
- } // Segment backwards compatibility
- else if (currentDataName.equals("Segment")) {
- String key = (String) parameters.get("storeGateKey");
- if (key != null) {
- if (key.toLowerCase().indexOf("mboy") >= 0 || key.toLowerCase().indexOf("moore") >= 0 || key.toLowerCase().indexOf("momu") >= 0 || key.toLowerCase().indexOf("mdt") >= 0 || key.toLowerCase().indexOf("muon") >= 0) {
- event.add(new AMuonSegmentData(parameters, event));
- } else {
- event.add(new AInDetSegmentData(parameters, event));
- }
- }
- } // Cluster backwards compatibility
- // datatypes Cluster - storeGateKey attribute is added
- else if (currentDataName.equals("Cluster") &&
- "".equals(storeGateKey)) {
- parameters.put("storeGateKey", "DefaultCluster");
- event.add(new AClusterData(parameters, event));
- } //Electron backwards compatibility
- else if (currentDataName.equals("Electron") &&
- "".equals(storeGateKey)) {
- parameters.put("storeGateKey", "ElectronCollection");
- event.add(new AElectronData(parameters, event));
- } //Muon backwards compatibility
- else if (currentDataName.equals("Muon") &&
- "".equals(storeGateKey)) {
- parameters.put("storeGateKey", "MuonCollection");
- event.add(new AMuonData(parameters, event));
- } //Photon backwards compatibility
- else if (currentDataName.equals("Photon") &&
- "".equals(storeGateKey)) {
- parameters.put("storeGateKey", "PhotonCollection");
- event.add(new APhotonData(parameters, event));
- } //BJet backwards compatibility
- else if (currentDataName.equals("BJet") &&
- "".equals(storeGateKey)) {
- parameters.put("storeGateKey", "BJetCollection");
- event.add(new ABJetData(parameters, event));
- } //TauJet backwards compatibility
- else if (currentDataName.equals("TauJet") &&
- "".equals(storeGateKey)) {
- parameters.put("storeGateKey", "TauJetCollection");
- event.add(new ATauJetData(parameters, event));
- } //CompositeParticle backwards compatibility
- else if (currentDataName.equals("CompositeParticle") &&
- "".equals(storeGateKey)) {
- parameters.put("storeGateKey", "CompositeParticleCollection");
- event.add(new ACompositeParticleData(parameters, event));
- } //LVL1Result backwards compatibility
- else if (currentDataName.equals("LVL1Result") &&
- "".equals(storeGateKey)) {
- parameters.put("storeGateKey", "LVL1Result");
- event.add(new ALVL1ResultData(parameters, event));
- } //LVL1TriggerTower backwards compatibility
- else if (currentDataName.equals("LVL1TriggerTower") &&
- "".equals(storeGateKey)) {
- parameters.put("storeGateKey", "LVL1TriggerTower");
- event.add(new ALVL1TriggerTowerData(parameters, event));
- } //LVL1JetElement backwards compatibility
- else if (currentDataName.equals("LVL1JetElement") &&
- "".equals(storeGateKey)) {
- parameters.put("storeGateKey", "LVL1JetElement");
- event.add(new ALVL1JetElementData(parameters, event));
- } else {
- //try to autoconstruct the corresponding data type
- //First of all get all constructors for this class name
- Constructor[] cons = Class.forName("atlantis.data.A" + currentDataName + "Data").getDeclaredConstructors();
- //Flag if we found on
- boolean foundConstructor = false;
- //Now loop over constructors and pick the one that fits
- for (Constructor constructor : cons) {
- //Check for parameters
- Class[] params = constructor.getParameterTypes();
- if (params.length != 2) {
- continue;
- //Check both types
- }
- if (!params[0].getName().endsWith("AHashMap")) {
- continue;
- }
- if (!params[1].getName().endsWith("AEvent")) {
- continue;
- //seems we found the proper constructor - go and build the class
- }
- foundConstructor = true;
- event.add((AData) constructor.newInstance(new Object[]{parameters, event}));
- //also end the loop here
- break;
- }
- if (!foundConstructor) {
- throw new ClassNotFoundException("Found no valid constructor for data type " + currentDataName);
- }
- } // End of autoconstructor
-
-
- //Collect all possible errors here
- } catch (Throwable t) {
- //Will hold the error message
- String msg = null;
-
- //Could not find a class for this data type
- if (t instanceof ClassNotFoundException) {
- msg = "Class handling the type " + currentDataName + " not found";
- xmlErrorHandler.setError(ErrorState.INVALID_DATA, t);
- //Ran out ouf memory
- } else if (t instanceof OutOfMemoryError) {
- msg = "Atlantis ran out of memory while\n" + "reading in event data";
- xmlErrorHandler.setError(ErrorState.FATAL_ERROR, t);
- //Some weird Atlantis exception - check its error state
- } else if (t instanceof AAtlantisException) {
- msg = t.getMessage();
- //check Atlantis exception level
- if (((AAtlantisException)t).isFatal())
- xmlErrorHandler.setError(ErrorState.FATAL_ERROR, t);
- else
- xmlErrorHandler.setError(ErrorState.OTHER_ERROR, t);
- } else if (t instanceof InvocationTargetException) {
- msg = "Error when constructing " + currentFullName;
- xmlErrorHandler.setError(ErrorState.OTHER_ERROR, t);
- } else {
- msg = "Caught exception "+t.toString()+ " while constructing "+currentFullName;
- xmlErrorHandler.setError(ErrorState.OTHER_ERROR, t);
- }
-
- AOutput.append("\n" + msg + "\n", ALogInterface.WARNING);
- logger.error(msg, t);
- }
-
- /**
- * Now handle potential errors
- */
- //if we can proceed processing, throw an error
- if (xmlErrorHandler.getErrorState() == ErrorState.FATAL_ERROR)
- throw new SAXException("Error parsing event at tag <"+currentDataName+">",
- (Exception)xmlErrorHandler.getErrorCause());
-
- //Otherwise clear error state and continue
- xmlErrorHandler.setError(ErrorState.NO_ERROR, null);
- parseState = ParseState.WAITING_DATA;
- return;
- }
-
- }
- }
-
- /**
- * xml calls this routine whenever it finds CONTENT of type character array
- * (CDATA) this routine fills an array stored in the arrayParser *
- *
- * @param ch char[]
- * @param start int
- * @param length int
- */
- @Override
- public void characters(char[] ch, int start, int length) {
-
- //return immediately if we had an error before
- if (hasError()) return;
-
- //Make sure an arrayParser has been set before
- if (arrayParser == null){
- xmlErrorHandler.setError(ErrorState.FATAL_ERROR,new NullPointerException("ArrayParser object not defined"));
- logger.error("arrayParser is NULL in SAX DefaultHandler:characters");
- return;
- }
-
- //try to parse the value array
- try {
- arrayParser.parse(ch, start, length);
- } catch (NumberFormatException nfe) {
- xmlErrorHandler.setError(ErrorState.INVALID_DATA,nfe);
- String msg = "Data in <" + currentFullName + ">-<" + currentArrayName +
- "> contains invalid character \'" + nfe.getMessage() + "\'";
- logger.error(msg);
-
- } catch (IndexOutOfBoundsException oob) {
- xmlErrorHandler.setError(ErrorState.INVALID_DATA,oob);
- String msg = "The number of data in <" + currentFullName + ">-<"
- + currentArrayName + "> is more than declared";
- logger.error(msg);
- }
-
- } // characters() --------------------------------------------------------
-
- /**
- * Returns an entity resolver - should be event.dtd in case we read an event file
- * otherwise return null to use the default
- * @param publicId
- * @param systemId
- * @return an input source for the entity resolver
- */
- @Override
- public InputSource resolveEntity(String publicId, String systemId) {
- InputSource inputSource = null;
- String FILE_SEPAR = System.getProperty("file.separator");
-
- if (systemId.endsWith("event.dtd")) {
- String dtdFile = AGlobals.instance().getHomeDirectory() + "events" + FILE_SEPAR + "event.dtd";
- try {
- InputStream is = AUtilities.getFileAsStream(dtdFile);
- inputSource = new InputSource(is);
- } catch (AAtlantisException ae) {
- logger.error("reading " + dtdFile + " error: " + ae.getMessage(), ae);
- }
- }
-
- return inputSource;
-
- } // resolveEntity() ----------------------------------------------------
-
- /**
- * Corrects the Phi values to be in the range (0:2pi).
- * NOTE: This can still be done much nicer - but have you seen what it looked like before?!
- * @param p The AHashMap containing the float arrays to be checked.
- */
- private static void checkPhiRange(AHashMap p, String fullDataName) {
-
- //Loop over all keys in the Hashmap
- Iterator keyIter = p.keySet().iterator();
- while (keyIter.hasNext()) {
- //Check if this is a phi collection
- String keyName = (String) keyIter.next();
- //Only run on phi value arrays
- if (!keyName.startsWith("phi")) {
- continue;
- //Now get the actual array of values
- }
- float[] phi = null;
- try {
- phi = (float[]) p.get(keyName);
- } catch (ClassCastException cce) {
- //ignore any non-floar arrays that start with "phi"
- continue;
- }
- //Check that we didn't get an empty entry
- if (phi == null) {
- continue; //Now loop over all entries and correct them
- }
- for (int i = 0; i < phi.length; i++) {
- //Bring it down to the modulus of 2*Pi
- phi[i] = phi[i] % (float)AMath.TWO_PI;
- //Smaller zero is still possible
- if (phi[i] < 0.) phi[i] += AMath.TWO_PI;
- }
- }
- } // checkPhiRange() -----------------------------------------------------
-} // class AEventFromXML ====================================================
diff --git a/graphics/AtlantisJava/src/atlantis/data/AFCALData.java b/graphics/AtlantisJava/src/atlantis/data/AFCALData.java
deleted file mode 100755
index 9e8d233d12e..00000000000
--- a/graphics/AtlantisJava/src/atlantis/data/AFCALData.java
+++ /dev/null
@@ -1,1228 +0,0 @@
-package atlantis.data;
-
-import atlantis.canvas.ACanvas;
-import atlantis.event.AEvent;
-import atlantis.geometry.ACalorimeterDetector;
-import atlantis.globals.AGlobals;
-import atlantis.graphics.ACoord;
-import atlantis.output.ALogInterface;
-import atlantis.output.AOutput;
-import atlantis.parameters.AParameterUtilities;
-import atlantis.projection.AProjection;
-import atlantis.projection.AProjection2D;
-import atlantis.projection.AProjectionRZ;
-import atlantis.projection.AProjectionVP;
-import atlantis.projection.AProjectionYX;
-import atlantis.utils.AAtlantisException;
-import atlantis.utils.AHashMap;
-import atlantis.utils.AIdHelper;
-import atlantis.utils.AMath;
-import atlantis.utils.AUtilities;
-import atlantis.utils.ALogger;
-import java.io.IOException;
-import com.Ostermiller.util.CSVParser;
-import java.io.StringReader;
-import java.io.InputStream;
-import java.io.FileNotFoundException;
-
-/**
- * The Forward calorimeter implementation.
- *
- * @author Eric Jansen
- */
-public class AFCALData extends ACalorimeterData
-{
- private static ALogger logger = ALogger.getLogger(AFCALData.class);
-
- protected float[] x;
- protected float[] y;
- protected float[] z;
- protected float[] r;
- protected float[] dx;
- protected float[] dy;
- protected float[] dz;
- protected float[] dr;
-
- private int[][] cellTable;
-
- // data for real pulse shapes plots
- private int numSamplings = 0;
- private int[][] adcCounts = null;
- private float[] cellTime = null;
- private int[] cellGain = null;
- private float[] cellPedestal = null;
- private float[] adc2Mev = null;
- private static boolean pulseShapesDataAvailable = false;
- private static final String LOOKUP_TABLE_FILE =
- AGlobals.instance().getHomeDirectory() + "configuration" +
- System.getProperty("file.separator") +
- "rpsplt_fcal.csv";
- // number of lookup table values for real pulse shapes plots calculation
- private static final short NUMBER_OF_LOOKUP_VALUES = 600;
-
-
-
- AFCALData(AHashMap p, AEvent e)
- {
- super(p,e);
-
- x = p.getFloatArray("x");
- dx = p.getFloatArray("dx");
- y = p.getFloatArray("y");
- dy = p.getFloatArray("dy");
-
- r = new float[numData];
- dr = new float[numData];
-
- cellTable = new int[MAX_HIT_INDEX][MAX_HIT_INDEX];
-
- for (int i = 0; i < numData; i++)
- {
- try
- {
- side[i] = (byte) AIdHelper.larBarrelEndcap(id[i]);
- etaIndex[i] = (short) AIdHelper.larEta(id[i]);
- phiIndex[i] = (short) AIdHelper.larPhi(id[i]);
- sampling[i] = 0; //AIdHelper.larSampling(id[i]);
- }
- catch (AAtlantisException ex)
- {
- logger.error("Problem decoding ID " + id[i] + " in " +
- CALORIMETER_NAME + ": " + ex.getMessage());
- side[i] = 0;
- etaIndex[i] = -1;
- phiIndex[i] = -1;
- sampling[i] = -1;
- }
- }
-
- // Events produced by older JiveXML versions don't have z and dz yet.
- // Use the old hardcoded values in that case for backwards
- // compatibility.
- if (p.get("z") == null || p.get("dz") == null)
- {
- z = new float[numData];
- dz = new float[numData];
- for (int i = 0; i < numData; i++)
- {
- switch (sampling[i])
- {
- case 0:
- z[i] = (side[i] / Math.abs(side[i])) * 489.4f;
- dz[i] = 45.2f;
- break;
- case 1:
- z[i] = (side[i] / Math.abs(side[i])) * 534.8f;
- dz[i] = 45.0f;
- break;
- case 2:
- z[i] = (side[i] / Math.abs(side[i])) * 582.2f;
- dz[i] = 45.0f;
- break;
- }
- }
- }
- else
- {
- z = p.getFloatArray("z");
- dz = p.getFloatArray("dz");
- }
-
- float drMin = 0.0f, zMin = 0.0f, zMax = 0.0f, rMin = 0.0f, rMax = 0.0f;
- for (int i = 0; i < numData; i++)
- {
-
- if (side[i] < 0)
- {
- sub[i] = 0;
- }
- else
- {
- sub[i] = 1;
- }
-
- float etaMin = (float) AMath.etaAbs(z[i], Math.sqrt(Math.pow(Math.abs(x[i]) - dx[i], 2) +
- Math.pow(Math.abs(y[i]) - dy[i], 2)));
- float etaMax = (float) AMath.etaAbs(z[i], Math.sqrt(Math.pow(Math.abs(x[i]) + dx[i], 2) +
- Math.pow(Math.abs(y[i]) + dy[i], 2)));
- eta[i] = (etaMin + etaMax) / 2.f;
- //TODO check calculation original: deta[i] = etaMax - etaMin;
- deta[i] = Math.abs(etaMax - etaMin);
- phi[i] = (float) Math.atan2(y[i], x[i]);
- dphi[i] = (float) Math.abs(Math.atan2(y[i] + dy[i], x[i] - dx[i]) -
- Math.atan2(y[i] - dy[i], x[i] + dx[i]));
- if (phi[i] < 0)
- {
- phi[i] += 2. * Math.PI;
- }
-
- r[i] = (float) Math.sqrt(x[i] * x[i] + y[i] * y[i]);
- dr[i] = (float) Math.sqrt(dx[i] * dx[i] + dy[i] * dy[i]);
-
- // Collect some constants needed for binning the histograms.
- if (rMin == 0.0 || Math.abs(r[i]) - dr[i] / 2. < rMin)
- {
- rMin = Math.abs(r[i]) - dr[i] / 2.f;
- }
- if (rMax == 0.0 || Math.abs(r[i]) + dr[i] / 2. > rMax)
- {
- rMax = Math.abs(r[i]) + dr[i] / 2.f;
- }
- if (zMax == 0.0 || Math.abs(z[i]) + dz[i] / 2. > zMax)
- {
- zMax = Math.abs(z[i]) + dz[i] / 2.f;
- }
- if (zMin == 0.0 || Math.abs(z[i]) - dz[i] / 2. < zMin)
- {
- zMin = Math.abs(z[i]) - dz[i] / 2.f;
- }
- if (drMin == 0.0 || dr[i] < drMin)
- {
- drMin = dr[i];
- }
- }
-
- etaGranularity = AParameterUtilities.eta(zMin, rMax - drMin) - AParameterUtilities.eta(zMin, rMax);
- outerEta = AParameterUtilities.eta(zMax, rMin);
-
- // Collect some constants needed for drawing the histograms.
- for (int i = 0; i < ACalorimeterDetector.count(); i++)
- {
- if (outerR == 0.0 || ACalorimeterDetector.get(i).getRMax() > outerR)
- {
- outerR = ACalorimeterDetector.get(i).getRMax();
- }
- if (outerZ == 0.0 || ACalorimeterDetector.get(i).getZMax() > outerZ)
- {
- outerZ = ACalorimeterDetector.get(i).getZMax();
- }
- }
-
- for (int i = 0; i < et.length; ++i)
- {
- et[i] = Math.abs(energy[i] / (float) Math.cosh(eta[i]));
- }
-
- // read in FCAL data from real pulse shapes plots
- readPulseShapePlotData(p);
-
- }
-
-
-
- /**
- * readLookupTableFile() reads in comma separated values (CSV) file
- * with FCAL real pulse shapes plots time and amplitude lookup values
- * @param fileName String
- * @throws AAtlantisException
- */
- private void readLookupTableFile() throws AAtlantisException
- {
- try
- {
- InputStream is = AUtilities.getFileAsStream(LOOKUP_TABLE_FILE);
- CSVParser parser = new CSVParser(is);
- parser.setCommentStart("#");
- String arrayName = null;
-
- while((arrayName = parser.nextValue()) != null)
- {
- String valueArray = parser.nextValue(); // shall now contain all values
- CSVParser parserArray = new CSVParser(new StringReader(valueArray));
- String[][] s = parserArray.getAllValues();
-
- if("FCAL_LAYER0_AMPLITUDE".equals(arrayName))
- {
- ACalorimeterRPSPLT.FCAL_LAYER0_AMPLITUDE =
- getLookupTableArray(s, NUMBER_OF_LOOKUP_VALUES);
- }
- else if("FCAL_LAYER1_AMPLITUDE".equals(arrayName))
- {
- ACalorimeterRPSPLT.FCAL_LAYER1_AMPLITUDE =
- getLookupTableArray(s, NUMBER_OF_LOOKUP_VALUES);
- }
- else if("FCAL_LAYER2_AMPLITUDE".equals(arrayName))
- {
- ACalorimeterRPSPLT.FCAL_LAYER2_AMPLITUDE =
- getLookupTableArray(s, NUMBER_OF_LOOKUP_VALUES);
- }
- else if("FCAL_TIME".equals(arrayName))
- {
- ACalorimeterRPSPLT.FCAL_TIME =
- getLookupTableArray(s, NUMBER_OF_LOOKUP_VALUES);
- }
- } // while
- }
- catch(FileNotFoundException e)
- {
- throw new AAtlantisException("could not find file: " +
- LOOKUP_TABLE_FILE);
- }
- catch(IOException e)
- {
- throw new AAtlantisException("exception while reading file: " +
- LOOKUP_TABLE_FILE);
- }
- catch(AAtlantisException e)
- {
- throw e;
- }
-
- } // readLookupTableFile() ----------------------------------------------
-
-
-
- private void readPulseShapePlotData(AHashMap p)
- {
- // read ADCCounts and cell data for real pulse shapes plots
- adcCounts = super.getADCCountsData(p);
-
- // read LAr digits (cell data) for real pulse shapes plots
- cellTime = (p.get("cellTime") != null) ? p.getFloatArray("cellTime") : null;
- cellGain = (p.get("cellGain") != null) ? p.getIntArray("cellGain") : null;
- cellPedestal = (p.get("cellPedestal") != null) ? p.getFloatArray("cellPedestal") : null;
- adc2Mev = (p.get("adc2Mev") != null) ? p.getFloatArray("adc2Mev") : null;
-
- pulseShapesDataAvailable = false;
- if(adcCounts != null && cellTime != null && cellGain != null &&
- cellPedestal != null && adc2Mev != null)
- {
- pulseShapesDataAvailable = true;
- numSamplings = adcCounts[0].length;
-
- logger.debug(CALORIMETER_NAME +
- ": data for real pulse shape plots available");
-
-
- if(ACalorimeterRPSPLT.areFCALLookupTablesInitialized())
- {
- logger.debug(CALORIMETER_NAME +
- ": lookup tables have already been read in");
- }
- else
- {
- logger.debug(CALORIMETER_NAME +
- ": lookup table values have not been read in yet\n" +
- " trying to read file: " + LOOKUP_TABLE_FILE);
- try
- {
- readLookupTableFile();
-
- logger.debug(CALORIMETER_NAME +
- ": values from " + LOOKUP_TABLE_FILE +
- " successfully read in");
-
- }
- catch(AAtlantisException ex)
- {
- logger.debug(CALORIMETER_NAME +
- ": reading " + LOOKUP_TABLE_FILE +
- " failed, real pulse shapes plots will not " +
- "be available, reason: " + ex.getMessage(), ex);
- pulseShapesDataAvailable = false;
- }
- }
- }
-
- } // readPulseShapePlotData() -------------------------------------------
-
-
-
-
- /**
- * Returns the name of the parameter group.
- *
- * @return String parameter group
- */
- public String getParameterGroup()
- {
- return "FCAL";
- }
-
- /**
- * Returns the name of the datatype.
- *
- * @return String datatype
- */
- public String getName()
- {
- return "FCAL";
- }
-
- /**
- * Returns the name of the datatype.
- *
- * @return String datatype
- */
- public String getNameScreenName()
- {
- return "FCAL";
- }
-
- /**
- * Returns the type of calorimeter (ECAL/HCAL) for a hit.
- *
- * @param index int hit index
- * @return String calorimeter type
- */
- public String getCalorimeterType(int index)
- {
- if (sampling[index] == 0)
- {
- return "ECAL";
- }
- else
- {
- return "HCAL";
- }
- }
-
- /**
- * Calorimeter cells can be drawn either explicitly or implicitly. In most
- * views cells that are located behind eachother are consolidated and only
- * the most energetic one is drawn explicitly. The other cells are drawn
- * implicitly, since their energy value is still added to the energy sum of
- * the explicitly drawn cell. The list manager does not know about the
- * implicitly drawn cells though, so this poses a problem when the user
- * requests information about a certain area of the canvas. This is solved
- * using this method. This function receives the list of explicitly drawn
- * cells and then adds the ones that were implicitly drawn in this
- * selection.
- *
- * @param drawn boolean[] initial drawn list containing only the explicitly
- * drawn cells
- * @return boolean[] drawn list containing the explicitly and the implicitly
- * drawn cells.
- */
- public boolean[] expandDrawn(boolean[] drawn)
- {
- AProjection projection = ACanvas.getCanvas().getCurrentWindow().getProjection();
-
- if (projection instanceof AProjectionYX)
- {
- return expandDrawnYX(drawn);
- }
- else if (projection instanceof AProjectionRZ)
- {
- return expandDrawnRZ(drawn);
- }
- else
- {
- return drawn;
- }
- }
-
- /**
- * Filters the drawList for the y-x projection. Hits from both endcaps are
- * combined.
- */
- protected void filterDrawListYX()
- {
- float etTable[][] = new float[MAX_HIT_INDEX][MAX_HIT_INDEX];
- for (int i = 0; i < MAX_HIT_INDEX; i++)
- {
- for (int j = 0; j < MAX_HIT_INDEX; j++)
- {
- cellTable[i][j] = -1;
- etTable[i][j] = 0.0f;
- }
- }
-
- for (int i = 0; i < numDraw; i++)
- {
- int j = listdl[i];
- int eta = etaIndex[j];
- int phi = phiIndex[j];
- etTable[eta][phi] += et[j];
- if (cellTable[eta][phi] < 0 || et[cellTable[eta][phi]] < et[j])
- cellTable[eta][phi] = j;
- }
-
- numDraw = 0;
- for (int i = 0; i < MAX_HIT_INDEX; i++)
- {
- for (int j = 0; j < MAX_HIT_INDEX; j++)
- {
- if (cellTable[i][j] > 0)
- {
- listdl[numDraw] = cellTable[i][j];
- etSum[listdl[numDraw]] = etTable[i][j];
- numDraw++;
- }
- }
- }
- }
-
- /**
- * See expandDrawn.
- *
- * @param drawn boolean[] initial drawn list containing only the explicitly
- * drawn cells
- * @return boolean[] drawn list containing the explicitly and the implicitly
- * drawn cells.
- */
- private boolean[] expandDrawnYX(boolean[] drawn)
- {
- makeDrawList();
-
- int mode = parameterStore.get("YX", "Mode").getI();
- if (parameterStore.get("YX", "DrawFCAL").getStatus() && mode >= AProjectionYX.MODE_HEC_2 &&
- mode <= AProjectionYX.MODE_HEC_4)
- {
- cutArray(sampling, mode - AProjectionYX.MODE_HEC_2, "Layer");
- }
- else if (mode >= AProjectionYX.MODE_FCAL_EM || mode <= AProjectionYX.MODE_FCAL_HAD_2)
- {
- cutArray(sampling, mode - AProjectionYX.MODE_FCAL_EM, "Layer");
- }
- else
- {
- return drawn;
- }
-
- for (int i = 0; i < numDraw; i++)
- {
- int j = listdl[i];
-
- if (drawn[j])
- continue;
-
- int eta = etaIndex[j];
- int phi = phiIndex[j];
-
- if (eta >= 0 && phi >= 0)
- {
- int mappedTo = cellTable[eta][phi];
-
- if (mappedTo >= 0 && drawn[mappedTo] == true)
- {
- drawn[j] = true;
- }
- }
- }
-
- return drawn;
- }
-
- /**
- * The rho-z projection is a bit difficult for FCAL. Because of the y-x
- * geometry of the cells there isn't really a nice way to project them in
- * rho-z. This prodedure takes the most energetic cell and the consolidates
- * it with all cells that overlap it. This is repeated until all cells are
- * assigned to such a most energetic cell. We are then left with a series of
- * "important" cells that do not overlap in rho-z. These can be drawn
- * nicely.
- */
- protected void filterDrawListRZ()
- {
- boolean available[] = new boolean[numDraw];
- int numCells = numDraw;
- int newNumDraw = 0;
-
- // Initialize the variables.
- for (int i = 0; i < numDraw; i++)
- {
- available[i] = true;
- }
- for (int i = 0; i < numData; i++)
- {
- etSum[i] = 0.0f;
- }
-
- while (numCells > 0)
- {
-
- // Loop through all available cells and find the highest energy.
- int max = -1;
- for (int i = 0; i < numDraw; i++)
- {
- if (available[i])
- {
- if (max < 0 || et[listdl[i]] > et[listdl[max]])
- max = i;
- }
- }
-
- // This is a cell we want to draw, store it and remove it from the
- // available cells list.
- available[max] = false;
- numCells--;
- listdl[newNumDraw++] = listdl[max];
-
- // Now find all available cells that overlap this one. This loop
- // will be processed
- // quite a lot, so it is very important to do the "easy" rejects
- // first.
- for (int i = 0; i < numDraw; i++)
- {
- if (available[i])
- {
- int j = listdl[i];
-
- double zDist = Math.abs(z[j] - z[listdl[max]]);
- if (zDist >= (dz[j] + dz[listdl[max]]) / 2.)
- continue;
-
- double rDist = Math.abs(r[j] - r[listdl[max]]);
- if (rDist >= (dr[j] + dr[listdl[max]]) / 2.)
- continue;
-
- if (AParameterUtilities.getRhoSign(x[j], y[j]) != AParameterUtilities.getRhoSign(x[listdl[max]], y[listdl[max]]))
- continue;
-
- available[i] = false;
- etSum[listdl[max]] += et[j];
- numCells--;
- }
- }
- }
-
- numDraw = newNumDraw;
- }
-
- /**
- * See expandDrawn.
- *
- * @param drawn boolean[] initial drawn list containing only the explicitly
- * drawn cells
- * @return boolean[] drawn list containing the explicitly and the implicitly
- * drawn cells.
- */
- private boolean[] expandDrawnRZ(boolean[] drawn)
- {
- makeDrawList();
-
- boolean available[] = new boolean[numDraw];
- int numCells = numDraw;
-
- // Initialize the variables.
- for (int i = 0; i < numDraw; i++)
- {
- available[i] = true;
- }
-
- while (numCells > 0)
- {
-
- // Loop through all available cells and find the highest energy.
- int max = -1;
- for (int i = 0; i < numDraw; i++)
- {
- if (available[i])
- {
- if (max < 0 || et[listdl[i]] > et[listdl[max]])
- max = i;
- }
- }
-
- // This is a cell we want to draw, store it and remove it from the
- // available cells list.
- available[max] = false;
- numCells--;
-
- // Now find all available cells that overlap this one. This loop
- // will be processed
- // quite a lot, so it is very important to do the "easy" rejects
- // first.
- for (int i = 0; i < numDraw; i++)
- {
- if (available[i])
- {
- int j = listdl[i];
-
- double zDist = Math.abs(z[j] - z[listdl[max]]);
- if (zDist >= (dz[j] + dz[listdl[max]]) / 2.)
- continue;
-
- double rDist = Math.abs(r[j] - r[listdl[max]]);
- if (rDist >= (dr[j] + dr[listdl[max]]) / 2.)
- continue;
-
- if (AParameterUtilities.getRhoSign(x[j], y[j]) != AParameterUtilities.getRhoSign(x[listdl[max]], y[listdl[max]]))
- continue;
-
- available[i] = false;
- if (drawn[listdl[max]])
- drawn[j] = true;
- numCells--;
- }
- }
- }
-
- return drawn;
- }
-
- /**
- * Draws the FCAL data in the y-x projection.
- *
- * @return ACoord cell geometry polygons
- */
- protected ACoord getYXUser()
- {
- makeDrawList();
-
- int mode = parameterStore.get("YX", "Mode").getI();
- if (parameterStore.get("YX", "DrawFCAL").getStatus() && mode >= AProjectionYX.MODE_HEC_2 &&
- mode <= AProjectionYX.MODE_HEC_4)
- {
- cutArray(sampling, mode - AProjectionYX.MODE_HEC_2, "Layer");
- }
- else if (mode >= AProjectionYX.MODE_FCAL_EM || mode <= AProjectionYX.MODE_FCAL_HAD_2)
- {
- cutArray(sampling, mode - AProjectionYX.MODE_FCAL_EM, "Layer");
- }
- else
- {
- return ACoord.NO_DATA;
- }
-
- filterDrawListYX();
-
- double[][][] hv = new double[2][numDraw][];
- int[] index = new int[numDraw];
-
- for (int i = 0; i < numDraw; i++)
- {
- int j = listdl[i];
- double xMin = x[j] - dx[j] / 2.;
- double xMax = x[j] + dx[j] / 2.;
- double yMin = y[j] - dy[j] / 2.;
- double yMax = y[j] + dy[j] / 2.;
-
- hv[0][i] = new double[] { xMax, xMin, xMin, xMax };
- hv[1][i] = new double[] { yMax, yMax, yMin, yMin };
-
- index[i] = j;
- }
-
- return new ACoord(hv, index, this);
- }
-
- /**
- * Draws the FCAL data in the rho-z projection. See the description of
- * filterDrawListRZ() for an explanation of the drawing method.
- *
- * @return ACoord cell geometry polygons
- */
- protected ACoord getRZUser()
- {
- makeDrawList();
- filterDrawListRZ();
-
- double[][][] hv = new double[2][numDraw][];
- int[] index = new int[numDraw];
-
- for (int i = 0; i < numDraw; i++)
- {
- int j = listdl[i];
-
- double zMin = z[j] - dz[j] / 2.;
- double zMax = z[j] + dz[j] / 2.;
- double rMin = Math.sqrt(Math.pow(Math.abs(x[j]) - Math.abs(dx[j] / 2.), 2) + Math.pow(Math.abs(y[j]) - Math.abs(dy[j] / 2.), 2));
- double rMax = Math.sqrt(Math.pow(Math.abs(x[j]) + Math.abs(dx[j] / 2.), 2) + Math.pow(Math.abs(y[j]) + Math.abs(dy[j] / 2.), 2));
-
- double phiMid = Math.toRadians(parameterStore.get("RZ", "Phi").getD());
- double phiDiff = Math.abs(phi[j] - phiMid);
- if (phiDiff > Math.PI / 2. && phiDiff <= 3 * Math.PI / 2.)
- {
- rMin *= -1;
- rMax *= -1;
- }
-
- hv[0][i] = new double[] { zMax, zMin, zMin, zMax };
- hv[1][i] = new double[] { rMax, rMax, rMin, rMin };
-
- index[i] = j;
- }
-
- return new ACoord(hv, index, this);
- }
-
- /**
- * Applies cuts to the data.
- */
- protected void applyCuts()
- {
- super.applyCuts();
- cut("CutsCalo", "FCALET", "FCALET", et);
- cut("CutsCalo", "FCALEnergy", "FCALEnergy", energy);
-
- int cutSub = parameterStore.get("CutsCalo", "FCAL").getI();
- if(cutSub != -1)
- {
- cutArray(sub, cutSub, "Endcap");
- }
- }
-
- /**
- * Returns the data in the phi-rho projection.
- *
- * @return ACoord polygons representing calorimeter cells
- */
- public ACoord getFRUser()
- {
- return getYXUser().convertYXToFR().includePhiWrapAround("FR");
- }
-
- /**
- * Returns the data in the phi-eta projection.
- *
- * @return ACoord polygons representing calorimeter cells
- */
- protected ACoord getVPUser()
- {
- makeDrawList();
-
- switch (parameterStore.get("VP", "Mode").getI())
- {
- case AProjectionVP.MODE_ECAL_LAYER_0:
- case AProjectionVP.MODE_ECAL_LAYER_1:
- case AProjectionVP.MODE_ECAL_LAYER_2:
- case AProjectionVP.MODE_ECAL_LAYER_3:
- cutArray(sampling, 0, "EM");
- break;
- case AProjectionVP.MODE_HCAL_LAYER_0:
- case AProjectionVP.MODE_HCAL_LAYER_1:
- case AProjectionVP.MODE_HCAL_LAYER_2:
- case AProjectionVP.MODE_HCAL_LAYER_3:
- cutArrayOR(sampling, 1, 2, "Hadronic");
- break;
- default:
- return ACoord.NO_DATA;
- }
-
- double[][][] hv = new double[2][numDraw][4];
- int[] index = new int[numDraw];
-
- for (int i = 0; i < numDraw; i++)
- {
- int j = listdl[i];
- etSum[j] = et[j];
-
- double eta0 = AMath.etaAbs(z[j], (float) Math.sqrt(Math.pow(x[j] + dx[j] / 2., 2) + Math.pow(y[j] + dy[j] / 2., 2)));
- double eta1 = AMath.etaAbs(z[j], (float) Math.sqrt(Math.pow(x[j] - dx[j] / 2., 2) + Math.pow(y[j] + dy[j] / 2., 2)));
- double eta2 = AMath.etaAbs(z[j], (float) Math.sqrt(Math.pow(x[j] - dx[j] / 2., 2) + Math.pow(y[j] - dy[j] / 2., 2)));
- double eta3 = AMath.etaAbs(z[j], (float) Math.sqrt(Math.pow(x[j] + dx[j] / 2., 2) + Math.pow(y[j] - dy[j] / 2., 2)));
-
- // Calculate phi between 0 and 360.
- double phi0 = Math.toDegrees(Math.atan2(y[j] + dy[j] / 2., x[j] + dx[j] / 2.) + 360.) % 360.;
- double phi1 = Math.toDegrees(Math.atan2(y[j] + dy[j] / 2., x[j] - dx[j] / 2.) + 360.) % 360.;
- double phi2 = Math.toDegrees(Math.atan2(y[j] - dy[j] / 2., x[j] - dx[j] / 2.) + 360.) % 360.;
- double phi3 = Math.toDegrees(Math.atan2(y[j] - dy[j] / 2., x[j] + dx[j] / 2.) + 360.) % 360.;
-
- // Some code to prevent problems with cells going across the 0/360
- // border.
- if (phi1 - phi0 > 180.)
- phi1 -= 360.;
- else if (phi0 - phi1 > 180.)
- phi1 += 360;
- if (phi2 - phi1 > 180.)
- phi2 -= 360.;
- else if (phi1 - phi2 > 180.)
- phi2 += 360;
- if (phi3 - phi2 > 180.)
- phi3 -= 360.;
- else if (phi2 - phi3 > 180.)
- phi3 += 360;
-
- hv[0][i] = new double[] { eta0, eta1, eta2, eta3 };
- hv[1][i] = new double[] { phi0, phi1, phi2, phi3 };
-
- index[i] = j;
- }
-
- return new ACoord(hv, index, this).includePhiWrapAround("VP");
- }
-
- /**
- * Returns the histograms in the RZ projection.
- *
- * @return ACoord[] histograms
- */
- public ACoord[] getRZHistograms()
- {
- AHistogram histUp = new AHistogram(-outerEta, outerEta, etaGranularity, histoScale.getD(), this);
- AHistogram histDown = new AHistogram(-outerEta, outerEta, etaGranularity, histoScale.getD(), this);
-
- for (int i = 0; i < numDraw; i++)
- {
- int j = listdl[i];
- int sign = AParameterUtilities.getRhoSign(x[j], y[j]);
- double etaMin;
- double etaMax;
-
- if (side[j] < 0)
- {
- etaMin = AParameterUtilities.eta(z[j] + dz[j] / 2.f, r[j] - dr[j] / 2.f);
- etaMax = AParameterUtilities.eta(z[j] - dz[j] / 2.f, r[j] + dr[j] / 2.f);
- }
- else
- {
- etaMin = AParameterUtilities.eta(z[j] - dz[j] / 2.f, r[j] + dr[j] / 2.f);
- etaMax = AParameterUtilities.eta(z[j] + dz[j] / 2.f, r[j] - dr[j] / 2.f);
- }
-
- if (sign > 0)
- {
- histUp.fill(etaMin, etaMax, etSum[j]);
- }
- else
- {
- histDown.fill(etaMin, etaMax, etSum[j]);
- }
- }
-
- ACoordArray c = new ACoordArray();
- c.add(histUp.getRZUser(outerZ, outerR, AHistogram.UP));
- c.add(histDown.getRZUser(outerZ, outerR, AHistogram.DOWN));
- return c.getArray();
- }
-
-
-
-// /**
-// * Determines adc2Mev factor value for a cell. The number either comes
-// * with the event file (adc2Mev subtag), but sometimes is not available
-// * in Athena (in the database) which is indicated by -1 in the event file
-// * for a particular cell. In this case, use predefined constant in this
-// * method.
-// *
-// * zdenek (2008-09-15):
-// * These predefined values (which are used if adc2Mev factor is -1) should
-// * no longer be used. if the factor is not present, do not plot the pulse
-// * shape, just the ADC counts as these values are non-sense. The method
-// * and references to it should be removed after some time (if calo people
-// * don't change their mind to pre-define some other values and use those)
-// *
-// * @param index int
-// * @return String
-// */
- /*
- private float getADC2MevFactorPredefined(int index)
- {
- int layer = sampling[index];
- float r = Float.NaN;
- switch(layer)
- {
- case 0: r = 87.0f;
- break;
- case 1: r = 117.0f;
- break;
- case 2: r = 193.0f;
- break;
- }
-
- return r;
-
- } // getADC2MevFactorPredefined() ---------------------------------------
- */
-
-
- /**
- * Returns info about a selected hit (for picking)
- *
- * @param index int hit index
- * @return String info
- */
- public String getHitInfo(int index)
- {
- int simpleOutput = AGlobals.instance().getSimpleOutput();
- if(simpleOutput>0){
- String output = getNameScreenName()+" index: " + index;
- if(simpleOutput==1 || simpleOutput==3)
- output+= "\n ET="+String.format("%.3f",et[index])+" GeV\n "+
- AMath.ETA+" = "+String.format("%.3f",eta[index])+"\n "+
- AMath.PHI+" = "+String.format("%.3f",Math.toDegrees(phi[index]))+AMath.DEGREES;
- if(simpleOutput==2 || simpleOutput==3)
- output+= "\n Ex="+String.format("%.3f",et[index]*Math.cos(phi[index]))+" GeV "+
- "\n Ey="+String.format("%.3f",et[index]*Math.sin(phi[index]))+" GeV "+
- "\n Ez="+String.format("%.3f",et[index]*Math.sinh(eta[index]))+" GeV ";
- return output;
- }
-
- String t = "";
- String cellInfo = "";
-
- t = super.getHitInfo(index);
- cellInfo += "\n x = " + x[index] + " cm";
- cellInfo += "\n y = " + y[index] + " cm";
-
- cellInfo += "\n cell time = ";
- cellInfo += (cellTime != null) ? Float.toString(cellTime[index]) +
- " ns" : "n/a";
- cellInfo += "\n cell gain = ";
- cellInfo += (cellGain != null) ? Integer.toString(cellGain[index]) : "n/a";
- cellInfo += "\n cell pedestal = ";
- cellInfo += (cellPedestal != null) ? Float.toString(cellPedestal[index]) +
- " ADC counts" : "n/a";
-
- cellInfo += "\n ADC 2 MeV = ";
- if(adc2Mev == null)
- {
- cellInfo += "n/a";
- }
- else
- {
- // subtag adc2Mev was available in the event file
- if(adc2Mev[index] != -1)
- {
- // other than -1: the factor was available in
- // Athena (database) for this particular cell
- cellInfo += Float.toString(adc2Mev[index]) + " (from database)";
- }
- else
- {
- // -1 -> the factor wasn't available in Athena (database),
- // use hardcoded constant for this particular cell
- cellInfo += "-1 (n/a in database)";
- // see comment at the getADC2MevFactorPredefined() method
- // (was printing the predefined value) using predefined " +
- // Float.toString(getADC2MevFactorPredefined(index));
- }
- }
-
- cellInfo += pulseShapesDataAvailable ? "" :
- "\n data for real pulse shapes plot n/a";
-
- return t + cellInfo;
-
- } // getHitInfo() -------------------------------------------------------
-
- @Override //ACalorimeterData
- //Gives the hit time for this cell
- protected double getTime(int hit)
- {
- if (cellTime == null) return 0.0;
- else return cellTime[hit];
- }
-
- /**
- * Recalculates eta from r and z in case the user wants to have their eta
- * with respect to the primary vertex instead of 0. The calculation is a
- * little different from the other calorimeter classes because this one
- * contains both barrel and endcap data.
- *
- * @param index int index of hit in data
- * @return double eta value
- */
- public double getEta(int index)
- {
- if (!parameterStore.get("VP", "EtaVertex").getStatus())
- {
- return this.eta[index];
- }
-
- return AParameterUtilities.eta(z[index], Math.sqrt(x[index] * x[index] + y[index] * y[index]));
- }
-
- /**
- * Returns the histograms for this projection.
- *
- * @param projection AProjection2D current projection
- * @return ACoord[] polygons representing histograms
- */
- protected ACoord[] getUserHistograms(AProjection2D projection)
- {
- ACoord[] data = ACoord.NO_HISTOGRAMS;
- if (projection instanceof AProjectionRZ)
- data = getRZHistograms();
- return projection.nonLinearTransform(data);
- }
-
-
-
-// /**
-// * Call util class which plots cell pulse shapes provided that
-// * all real pulse shapes data is available
-// * Functions calculates values of real pulse shape calculated in the method
-// * getPhysicsPulseShape().
-// * This method is called from pick interaction.
-// *
-// * @param index int
-// */
- /*public void plotPulseShapes(int index)
- {
-
- if(pulseShapesDataAvailable)
- {
- String title = getPulseTitleString(index);
-
- int[][] adcCountsLocal = new int[][] { adcCounts[index] };
-
- if(super.checkADCCountsAvailability(adcCountsLocal))
- {
- // adc counts are available
- logger.debug(CALORIMETER_NAME + " adc counts (digits) are " +
- "available for pulse shapes plots for this cell.");
- }
- else
- {
- AOutput.append("\nADC counts are not available for this cell, " +
- "can't plot pulse shapes.", ALogPane.WARNING);
- return;
- }
-
-
- float[] time = ACalorimeterRPSPLT.FCAL_TIME; // lookup tables
- float[] amplitude = null; // lookup tables
- switch(sampling[index])
- {
- // use correct amplitude lookup table for this layer (sampling)
- case 0: amplitude = ACalorimeterRPSPLT.FCAL_LAYER0_AMPLITUDE;
- break;
- case 1: amplitude = ACalorimeterRPSPLT.FCAL_LAYER1_AMPLITUDE;
- break;
- case 2: amplitude = ACalorimeterRPSPLT.FCAL_LAYER2_AMPLITUDE;
- break;
- default: AOutput.append("\nADC counts plot only, pulse shape " +
- "plot not implemented for " +
- CALORIMETER_NAME + " layer " +
- sampling[index] + "\n", ALogPane.WARNING);
- APulseShapePlot.plotADCCounts(adcCountsLocal, title, null);
- return;
- }
-
- // step - starting from 1, need to get step numbers within
- // number of ADC samples (adcCounts[0].length)
- double step = (adcCounts[0].length - 1) / (float) NUMBER_OF_LOOKUP_VALUES;
- double[][] realPulse = new double[1][NUMBER_OF_LOOKUP_VALUES]; // 1 channel
- double d = 1.0;
- // if adc2Mev != -1 -> use value from event file, otherwise predefined value
- // see comment at the getADC2MevFactorPredefined() method
- // factor variable is used as a flag whether or not to plot pulse shape,
- // if is -1 (adc2Mev not available), then want to see only the adc counts
- // and don't calculate the pulse shapes
- // getADC2MevFactorPredefined(index) is no longer in use, see comment at it
- float factor = adc2Mev[index];
-
- double energyLocal = energy[index] * 1000.0 / factor;
- try
- {
- if(factor != -1)
- {
- for(int i = 0; i < NUMBER_OF_LOOKUP_VALUES; i++)
- {
- d += step;
- realPulse[0][i] = super.getPhysicsPulseShape(d, cellTime[index],
- cellPedestal[index], energyLocal,
- amplitude, time, NUMBER_OF_LOOKUP_VALUES);
- }
- }
- }
- catch(AAtlantisException aaex)
- {
- AOutput.append(aaex.getMessage(), ALogPane.WARNING);
- return;
- }
-
- if(factor != -1)
- {
- logger.debug("adc2Mev factor available, plotting full plot.");
- APulseShapePlot.plotRealPulseShapes(adcCountsLocal, realPulse,
- step, null, title);
- }
- else
- {
- logger.debug("adc2Mev factor not available, plotting just adc counts.");
- APulseShapePlot.plotADCCounts(adcCountsLocal, title, null);
- }
-
- } // if(pulseShapesDataAvailable)
- else
- {
- return;
- }
-
- }*/ // plotPulseShapes() --------------------------------------------------
-
- @Override
- protected int[][] getADCCounts(int index) {
-
- if (pulseShapesDataAvailable) {
- return new int[][]{adcCounts[index]};
- } else {
- return null;
- }
- }
-
- /**
- * Calculate local time for pulse shape plots
- */
- protected double getLocalTime(double xTime, double cellTime, int numSamplings) {
- int nominalPeakSample = (int)(numSamplings / 2.);
- return ((xTime - nominalPeakSample + 3) * 25.0) - cellTime;
- }
-
- @Override
- protected double[][] getPulseShape(int index) {
-
- float[] time = ACalorimeterRPSPLT.FCAL_TIME; // lookup tables
- float[] amplitude = null; // lookup tables
- switch(sampling[index])
- {
- // use correct amplitude lookup table for this layer (sampling)
- case 0: amplitude = ACalorimeterRPSPLT.FCAL_LAYER0_AMPLITUDE;
- break;
- case 1: amplitude = ACalorimeterRPSPLT.FCAL_LAYER1_AMPLITUDE;
- break;
- case 2: amplitude = ACalorimeterRPSPLT.FCAL_LAYER2_AMPLITUDE;
- break;
- default: AOutput.append("\nADC counts plot only, pulse shape " +
- "plot not implemented for " +
- CALORIMETER_NAME + " layer " +
- sampling[index] + "\n", ALogInterface.WARNING);
- return null;
- }
-
- // step - starting from 1, need to get step numbers within
- // number of ADC samples (adcCounts[0].length)
- double step = getPulseStep(index);
- double[][] realPulse = new double[1][NUMBER_OF_LOOKUP_VALUES]; // 1 channel
- double d = 1.0;
- // if adc2Mev != -1 -> use value from event file, otherwise predefined value
- // see comment at the getADC2MevFactorPredefined() method
- // factor variable is used as a flag whether or not to plot pulse shape,
- // if is -1 (adc2Mev not available), then want to see only the adc counts
- // and don't calculate the pulse shapes
- // getADC2MevFactorPredefined(index) is no longer in use, see comment at it
- float factor = adc2Mev[index];
-
- double energyLocal = energy[index] * 1000.0 / factor;
- try
- {
- if(factor != -1)
- {
- for(int i = 0; i < NUMBER_OF_LOOKUP_VALUES; i++)
- {
- d += step;
- double localTime = getLocalTime(d, cellTime[index], this.numSamplings);
- realPulse[0][i] = super.getPhysicsPulseShape(localTime,
- cellPedestal[index], energyLocal,
- amplitude, time, NUMBER_OF_LOOKUP_VALUES);
- }
- }
- }
- catch(AAtlantisException aaex)
- {
- AOutput.append(aaex.getMessage(), ALogInterface.WARNING);
- return null;
- }
-
- if(factor != -1)
- {
- logger.debug("adc2Mev factor available, plotting full plot.");
- return realPulse;
- }
- else
- {
- logger.debug("adc2Mev factor not available, plotting just adc counts.");
- return null;
- }
-
- }
-
- @Override
- protected double getPulseStep(int index) {
- return (adcCounts[0].length - 1) / (float) NUMBER_OF_LOOKUP_VALUES;
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/data/AG4StepData.java b/graphics/AtlantisJava/src/atlantis/data/AG4StepData.java
deleted file mode 100755
index 7f962718d03..00000000000
--- a/graphics/AtlantisJava/src/atlantis/data/AG4StepData.java
+++ /dev/null
@@ -1,559 +0,0 @@
-package atlantis.data;
-
-import java.io.FileNotFoundException;
-import java.io.IOException;
-import java.util.logging.Level;
-import java.util.logging.Logger;
-import java.io.BufferedInputStream;
-import java.io.BufferedReader;
-import java.io.FileInputStream;
-import java.io.FileReader;
-import java.io.InputStreamReader;
-import java.util.Enumeration;
-import java.util.Scanner;
-import java.util.zip.ZipEntry;
-import java.util.zip.ZipFile;
-
-import atlantis.parameters.AParameterUtilities;
-import atlantis.canvas.ACanvas;
-import atlantis.globals.AGlobals;
-import atlantis.graphics.ACoord;
-import atlantis.utils.AAtlantisException;
-import atlantis.event.ABufferedEventSource;
-import atlantis.event.AData;
-import atlantis.event.AEvent;
-import atlantis.utils.AHashMap;
-
-/**
- * This class holds the data from GEANT4 (G4) steps which
- * represent the path of simulated particles. The steps
- * are read in from a (zipped) text file via the File menu
- * or by pressing "/".
- * The file (named "G4Atlantis_run_event.txt(.zip)") can be
- * made by running AtlasG4 with a special plugin:
- * AtlasG4_trf.py postInitInclude="G4UserActions/G4AtlantisDumper_options.py"
- *
- * @author Andy Haas (ahaas)
- */
-public class AG4StepData extends AData {
-
- protected int[] nsteps;
- protected int[] gid;
- protected int[] pid;
- protected int[] fs;
- protected int[] ls;
- protected int[] stepn;
- protected String[] pn;
- protected int[] nsec;
- protected float[] tedep;
- protected float[] tnedep;
- protected float[] length;
- protected int[] pdg;
- protected float[] mass;
- protected float[] charge;
- protected float[] x1;
- protected float[] y1;
- protected float[] z1;
- protected float[] t1;
- protected float[] x2;
- protected float[] y2;
- protected float[] z2;
- protected float[] t2;
- protected float[] px1;
- protected float[] py1;
- protected float[] pz1;
- protected float[] ke1;
- protected float[] px2;
- protected float[] py2;
- protected float[] pz2;
- protected float[] ke2;
-
- protected float[] eta1;
- protected float[] p1;
-
- public AG4StepData(AHashMap p, AEvent e) {
- super(p, e);
-
- nsteps = p.getIntArray("nsteps");
- gid = p.getIntArray("id");
- pid = p.getIntArray("pid");
- fs = p.getIntArray("fs");
- ls = p.getIntArray("ls");
- stepn = p.getIntArray("stepn");
- pn = p.getStringArray("pn");
- nsec= p.getIntArray("nsec");
- tedep = p.getFloatArray("tedep");
- tnedep = p.getFloatArray("tnedep");
- length = p.getFloatArray("length");
- pdg = p.getIntArray("pdg");
- mass = p.getFloatArray("mass");
- charge = p.getFloatArray("charge");
- x1 = p.getFloatArray("x1");
- y1 = p.getFloatArray("y1");
- z1 = p.getFloatArray("z1");
- t1 = p.getFloatArray("t1");
- x2 = p.getFloatArray("x2");
- y2 = p.getFloatArray("y2");
- z2 = p.getFloatArray("z2");
- t2 = p.getFloatArray("t2");
- px1 = p.getFloatArray("px1");
- py1 = p.getFloatArray("py1");
- pz1 = p.getFloatArray("pz1");
- ke1 = p.getFloatArray("ke1");
- px2 = p.getFloatArray("px2");
- py2 = p.getFloatArray("py2");
- pz2 = p.getFloatArray("pz2");
- ke2 = p.getFloatArray("ke2");
-
- eta1 = new float[numData];
- p1 = new float[numData];
- for (int i=0; i<numData; ++i) {
- eta1[i]=(float)(-1.0*Math.log(Math.tan(
- Math.acos( z1[i]/Math.sqrt(x1[i]*x1[i]+y1[i]*y1[i]+z1[i]*z1[i]) )/2.0
- )));
- p1[i]=(float)Math.sqrt(px1[i]*px1[i]+py1[i]*py1[i]+pz1[i]*pz1[i]);
- }
- }
-
- /**
- * The color of the step displayed... mostly determined
- * by the particle type (pdgid) for now.
- */
- @Override
- protected void colorByIndex() {
- int numColors = parameterStore.get("HitColors", "Number").getI();
- if (numColors<6) return;//not enough colors!
- int[] col = parameterStore.getArray("HitColors", "C1", numColors);
- for (int i = 0; i < numData; i++) {
-
- if (charge[i]==0) color[i] = (byte)col[0];//neutral
- else color[i] = (byte)col[1];//charged
-
- if (pdg[i]==22) color[i] = (byte)col[2];//photons
- if (Math.abs(pdg[i])==11) color[i] = (byte)col[3];//electrons
- if (Math.abs(pdg[i])==13) color[i] = (byte)col[4];//muons
- if (Math.abs(pdg[i])>=1000000000) color[i] = (byte)col[5];//nuclei
- }
- }
-
- /**
- * Can choose to color by constant color, or using the
- * function above (by type / index).
- */
- protected int internalColor() {
- int colorFunction = parameterStore.get(PARAMETER_GROUP, "ColorFunction").getI();
- switch (colorFunction) {
- case 0:
- colorByConstant();
- break;
- case 1:
- colorByIndex();
- break;
- }
- return 1;
- }
-
- /**
- * Cuts on the particle type, energy, etc.
- * Adjusted via the gui, and in the config-G4.xml file.
- */
- protected void applyCuts() {
- cutIndex();
-
- cut("CutsObjects", "G4StepKE1", " ke1", ke1);//starting kinetic energy (MeV)
- cut("CutsObjects", "G4StepP1", " p1", p1);//starting momentum (MeV)
-
- cut("CutsObjects", "G4StepPhotons", " |pdg|", pdg);//22
- cut("CutsObjects", "G4StepElectrons", " |pdg|", pdg);//11
- cut("CutsObjects", "G4StepMuons", " |pdg|", pdg);//13
- cut("CutsObjects", "G4StepPions", " |pdg|", pdg);//211
- cut("CutsObjects", "G4StepProtons", " |pdg|", pdg);//2212
- cut("CutsObjects", "G4StepNeutrons", " |pdg|", pdg);//2112
-
- // Nuclear codes are given as 10-digit numbers +-10LZZZAAAI.
- // For a nucleus consisting of np protons and nn neutrons
- // A = np + nn +nlambda and Z = np and L = nlambda
- // I gives the isomer level, with I = 0 corresponding to the ground state and I >0 to excitations
- cut("CutsObjects", "G4StepNuclei", " |pdg|", pdg);//1000000000
-
- }
-
- /**
- * Prints out stuff when you select a step using the hand.
- */
- public String getHitInfo(int index) {
- int simpleOutput = AGlobals.instance().getSimpleOutput();
- if (simpleOutput > 0) {
- return getNameScreenName() + " index: " + index + "\n";
- }
-
- String name = "none";
- try {
- name = APDGTable.getName(pdg[index]);
-
- } catch(APDGTable.ParticleNotFoundError e) {
- name = "unknown";
- }
-
- return getName() + " (index: " + index + ") : "
- + " storegate key = " + storeGateKey + "\n"
- + " total step # = " + nsteps[index] + " \n"
- + " geant/parent id = " + gid[index]+"/"+ pid[index] + " \n"
- + " first/last step? " + fs[index] +"/"+ ls[index] + " / step#="+stepn[index]+"\n"
- + " process = " + pn[index] + " / # secondaries = " + nsec[index] + " \n"
- + " energy/NI deposited = " + tedep[index]+" / "+tnedep[index]+" MeV\n"
- + " length = " + length[index] + " cm / " +"eta1 = "+eta1[index]+"\n"
- + " pdg = " + pdg[index] + " ("+name+")\n"
- + " mass / charge = " + mass[index]+" MeV"+" / "+charge[index]+"\n"
- + " x1 y1 z1 = " + String.format("%.3f", x1[index])+" "+String.format("%.3f", y1[index])+" "+String.format("%.3f", z1[index])+" cm\n"
- + " t1 = " + String.format("%.3f", t1[index]) + " ns\n"
- + " x2 y2 z2 = " + String.format("%.3f", x2[index])+" "+String.format("%.3f", y2[index])+" "+String.format("%.3f", z2[index])+" cm\n"
- + " t2 = " + String.format("%.3f", t2[index]) + " ns\n"
- + " px1 py1 pz1 = " + String.format("%.3f", px1[index])+" "+String.format("%.3f", py1[index])+" "+String.format("%.3f", pz1[index])+" MeV\n"
- + " ke1 = " + String.format("%.3f", ke1[index]) + " MeV\n"
- + " px2 py2 pz2 = " + String.format("%.3f", px2[index])+" "+String.format("%.3f", py2[index])+" "+String.format("%.3f", pz2[index])+" MeV\n"
- + " ke2 = " + String.format("%.3f", ke2[index]) + " MeV\n"
- + " p1 = " + String.format("%.3f", p1[index]) + " MeV\n"
- ;
- }
-
- /**
- * Make some cuts for drawing in the YX view.
- */
- @Override
- protected ACoord getYXUser() {
- //System.out.print("numData="+numData+", numDraw="+numDraw);
- makeDrawList();
- //System.out.print(" "+numDraw);
-
- //cut on |eta1|
- int num = 0;
- double AbsEtaXYcut = parameterStore.get(PARAMETER_GROUP, "AbsEtaXYcut").getD();
- if (AbsEtaXYcut >= 0.0) {
- for (int i = 0; i < numDraw; i++) {
- if (Math.abs(eta1[listdl[i]]) < AbsEtaXYcut) {
- listdl[num++] = listdl[i];
- }
- }
- numDraw = num;
- }
- //System.out.print(" "+numDraw);
-
- //cut on |z1|
- num = 0;
- double AbszXYcut = parameterStore.get(PARAMETER_GROUP, "AbszXYcut").getD();
- if (AbszXYcut >= 0.0) {
- for (int i = 0; i < numDraw; i++) {
- if (Math.abs(z1[listdl[i]]) < AbszXYcut) {
- listdl[num++] = listdl[i];
- }
- }
- numDraw = num;
- }
- //System.out.println(" "+numDraw);
-
- double[][][] hv = new double[2][numDraw][];
- int[] index = new int[numDraw];
- //double length = parameterStore.get(PARAMETER_GROUP, "SegmentLength").getD();
- for (int i = 0; i < numDraw; i++) {
- int j = listdl[i];
- hv[0][i] = new double[]{x1[j], x2[j]};
- hv[1][i] = new double[]{y1[j], y2[j]};
- index[i] = j;
- }
- return new ACoord(hv, index, this, ACoord.SMOOTH_POLYLINES);
- }
-
- /**
- * Make some cuts for drawing in the FR view.
- */
- @Override
- protected ACoord getFRUser() {
- return getYXUser().convertYXToFR().includePhiWrapAround("FR");
- }
-
- /**
- * Make some cuts for drawing in the RZ view.
- */
- @Override
- protected ACoord getRZUser() {
- makeDrawList();
-
- //cut on |eta1|
- int num = 0;
- double AbsEtaRZcut = parameterStore.get(PARAMETER_GROUP, "AbsEtaRZcut").getD();
- if (AbsEtaRZcut >= 0.0) {
- for (int i = 0; i < numDraw; i++) {
- if (Math.abs(eta1[listdl[i]]) < AbsEtaRZcut) {
- listdl[num++] = listdl[i];
- }
- }
- numDraw = num;
- }
- //cut on |z1|
- num = 0;
- double AbszRZcut = parameterStore.get(PARAMETER_GROUP, "AbszRZcut").getD();
- if (AbszRZcut >= 0.0) {
- for (int i = 0; i < numDraw; i++) {
- if (
- Math.abs(z1[listdl[i]]) < AbszRZcut &&
- Math.sqrt(x1[listdl[i]]*x1[listdl[i]]+y1[listdl[i]]*y1[listdl[i]]) < 1200
- ) {
- listdl[num++] = listdl[i];
- }
- }
- numDraw = num;
- }
-
- double[][][] hv = new double[2][numDraw][];
- int[] index = new int[numDraw];
- //double length = parameterStore.get(PARAMETER_GROUP, "SegmentLength").getD();
- for (int i = 0; i < numDraw; i++) {
- int j = listdl[i];
- double s = AParameterUtilities.getRhoSign(x1[j], y1[j]);//use same for both points to avoid ugliness
- double r1 = s * Math.sqrt(x1[j] * x1[j] + y1[j] * y1[j]);
- double r2 = s * Math.sqrt(x2[j] * x2[j] + y2[j] * y2[j]);
- hv[0][i] = new double[]{z1[j], z2[j]};
- hv[1][i] = new double[]{r1, r2};
- index[i] = j;
- }
- return new ACoord(hv, index, this, ACoord.POLYLINES);
- }
-
- @Override
- public String getName() {
- return "G4Step";
- }
-
- @Override
- public String getNameScreenName() {
- return "G4Step";
- }
-
- @Override
- public String getParameterGroup() {
- return "G4Step";
- }
-
- /**
- * Read in the corresponding G4Atlantis_run_event.txt(.zip) file.
- * It needs to be in the same directory as the JiveXML_run_event.xml file
- * that is currently being viewed.
- */
- public static void ReadG4Steps(){
- AEvent ev = eventManager.getCurrentEvent();
- String source = eventManager.getEventSource().getSourceName();
- System.out.println("Source="+source);
- String filename = source;
- if (source.contains("\\")) filename+="\\G4Atlantis_"+ev.getRunNumber()+"_"+ev.getEventNumber()+".txt";
- else filename += "/G4Atlantis_" + ev.getRunNumber() + "_" + ev.getEventNumber() + ".txt";
- System.out.println("Reading G4 file: " + filename);
- Scanner inFile = null;
- int maxnstepsinthisevent = 4000000;//max allowed
- int nstepsinfile = maxnstepsinthisevent;//will be set to actual number of steps in file, if lower than maximum
- try {
- inFile = new Scanner(new FileReader(filename));
-
- //try to get the number of steps that are in the file
- try {
- FileInputStream in = new FileInputStream(filename);
- BufferedReader br = new BufferedReader(new InputStreamReader(in));
- String strLine = null, tmp;
- while ((tmp = br.readLine()) != null) { strLine = tmp; }
- String lastLine = strLine;
- System.out.println(lastLine);
- in.close();
-
- Scanner lastlinescanner = new Scanner(lastLine);
- String llach = lastlinescanner.next();
- String _llach = "ACH_G4Step";
- if (!llach.equals(_llach)) {
- System.out.println("??ach in lastline = " + llach);
- }
- nstepsinfile = lastlinescanner.nextInt()+1;
-
- } catch (IOException ex) {
- Logger.getLogger(AG4StepData.class.getName()).log(Level.SEVERE, null, ex);
- }
-
- } catch (FileNotFoundException ex) {
- //Logger.getLogger(AEventQueue.class.getName()).log(Level.SEVERE, null, ex);
- System.out.println("Could not open "+filename);
- }
-
- if (inFile == null) {
- ZipFile zipfile = null;
- try {
- System.out.println("Reading G4 file: " + filename+".zip");
- zipfile = new ZipFile(filename + ".zip");
- } catch (IOException ex) {
- //Logger.getLogger(AEventQueue.class.getName()).log(Level.SEVERE, null, ex);
- System.out.println("Could not open "+filename+".zip either");
- }
- if (zipfile != null) {
- BufferedInputStream is = null;
- ZipEntry entry;
- Enumeration e = zipfile.entries();
- while (e.hasMoreElements()) {
- entry = (ZipEntry) e.nextElement();
- System.out.println("Extracting: " + entry);
- try {
- is = new BufferedInputStream(zipfile.getInputStream(entry));
- BufferedReader br = new BufferedReader(new InputStreamReader(is));
- String strLine = null, tmp;
- while ((tmp = br.readLine()) != null) {
- strLine = tmp;
- }
- String lastLine = strLine;
- System.out.println(lastLine);
-
- Scanner lastlinescanner = new Scanner(lastLine);
- String llach = lastlinescanner.next();
- String _llach = "ACH_G4Step";
- if (!llach.equals(_llach)) {
- System.out.println("??ach in lastline = " + llach);
- }
- nstepsinfile = lastlinescanner.nextInt() + 1;
-
- is = new BufferedInputStream(zipfile.getInputStream(entry));
- inFile = new Scanner(is);
- } catch (IOException ex) {
- Logger.getLogger(AG4StepData.class.getName()).log(Level.SEVERE, null, ex);
- }
-
- }
- }
- }
-
- if (inFile != null) {
-
- System.out.print("nsteps in file should be "+nstepsinfile+"... ");
- if (nstepsinfile>maxnstepsinthisevent) nstepsinfile=maxnstepsinthisevent;
- System.out.println(" and will read "+nstepsinfile+" steps.");
-
- try {
- AHashMap para = new AHashMap(100);
- float[] x1 = new float[nstepsinfile];
- float[] y1 = new float[nstepsinfile];
- float[] z1 = new float[nstepsinfile];
- float[] t1 = new float[nstepsinfile];
- float[] x2 = new float[nstepsinfile];
- float[] y2 = new float[nstepsinfile];
- float[] z2 = new float[nstepsinfile];
- float[] t2 = new float[nstepsinfile];
- float[] px1 = new float[nstepsinfile];
- float[] py1 = new float[nstepsinfile];
- float[] pz1 = new float[nstepsinfile];
- float[] ke1 = new float[nstepsinfile];
- float[] px2 = new float[nstepsinfile];
- float[] py2 = new float[nstepsinfile];
- float[] pz2 = new float[nstepsinfile];
- float[] ke2 = new float[nstepsinfile];
- int[] nsteps = new int[nstepsinfile];
- int[] id = new int[nstepsinfile];
- int[] pid = new int[nstepsinfile];
- int[] fs = new int[nstepsinfile];
- int[] ls = new int[nstepsinfile];
- int[] stepn = new int[nstepsinfile];
- String[] pn = new String[nstepsinfile];
- int[] nsec = new int[nstepsinfile];
- float[] tedep = new float[nstepsinfile];
- float[] tnedep = new float[nstepsinfile];
- float[] length = new float[nstepsinfile];
- int[] pdg = new int[nstepsinfile];
- float[] mass = new float[nstepsinfile];
- float[] charge = new float[nstepsinfile];
-
- int n = 0;
- String _ach = "ACH_G4Step";
- while (inFile.hasNext() && n<nstepsinfile){
- String ach = inFile.next();
- if (!ach.equals(_ach)) {
- System.out.println("??ach = " + ach);
- }
- nsteps[n] = inFile.nextInt();
- id[n] = inFile.nextInt();
- pid[n] = inFile.nextInt();
- fs[n] = inFile.nextInt();
- ls[n] = inFile.nextInt();
- stepn[n] = inFile.nextInt();
- pn[n] = inFile.next();
- nsec[n] = inFile.nextInt();
- tedep[n] = inFile.nextFloat();
- tnedep[n] = inFile.nextFloat();
- length[n] = inFile.nextFloat()/10.0f;
- pdg[n] = inFile.nextInt();
- //System.out.println("pdg="+pdg);
- mass[n] = inFile.nextFloat();
- charge[n] = inFile.nextFloat();
- x1[n] = inFile.nextFloat()/10.0f;
- y1[n] = inFile.nextFloat()/10.0f;
- z1[n] = inFile.nextFloat()/10.0f;
- t1[n] = inFile.nextFloat();
- px1[n] = inFile.nextFloat();
- py1[n] = inFile.nextFloat();
- pz1[n] = inFile.nextFloat();
- ke1[n] = inFile.nextFloat();
- x2[n] = inFile.nextFloat()/10.0f;
- y2[n] = inFile.nextFloat()/10.0f;
- z2[n] = inFile.nextFloat()/10.0f;
- t2[n] = inFile.nextFloat();
- px2[n] = inFile.nextFloat();
- py2[n] = inFile.nextFloat();
- pz2[n] = inFile.nextFloat();
- ke2[n] = inFile.nextFloat();
- ++n;
- if (n%100000==0) System.out.println("Read "+n+" steps");
- }
- System.out.println("Read "+n+" steps");
- inFile.close();
- System.out.println("Closed file.");
-
- para.put("nsteps",nsteps);
- para.put("id",id);
- para.put("pid",pid);
- para.put("fs",fs);
- para.put("ls",ls);
- para.put("stepn",stepn);
- para.put("pn",pn);
- para.put("nsec",nsec);
- para.put("tedep",tedep);
- para.put("tnedep",tnedep);
- para.put("length",length);
- para.put("pdg",pdg);
- para.put("mass",mass);
- para.put("charge",charge);
- para.put("x1", x1);
- para.put("y1", y1);
- para.put("z1", z1);
- para.put("t1", t1);
- para.put("x2", x2);
- para.put("y2", y2);
- para.put("z2", z2);
- para.put("t2", t2);
- para.put("px1", px1);
- para.put("py1", py1);
- para.put("pz1", pz1);
- para.put("ke1", ke1);
- para.put("px2", px2);
- para.put("py2", py2);
- para.put("pz2", pz2);
- para.put("ke2", ke2);
- para.put("numData", n);
- //para.put("storeGateKey", "G4");
-
- ABufferedEventSource.maxNumberOfEvents=1;//otherwise we run out of heap
- AG4StepData g4d = new AG4StepData(para, ev);
- ev.add(g4d);
- } catch (AAtlantisException ex) {
- Logger.getLogger(AG4StepData.class.getName()).log(Level.SEVERE, null, ex);
- }
- catch (OutOfMemoryError oom) {
- Logger.getLogger(AG4StepData.class.getName()).log(Level.SEVERE,"Ran out of memory while trying to read G4Step data");
- }
- ACanvas.getCanvas().repaintAllFromScratch();
- }//inFile!=null
-
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/data/AHECData.java b/graphics/AtlantisJava/src/atlantis/data/AHECData.java
deleted file mode 100755
index 2b1efe56a62..00000000000
--- a/graphics/AtlantisJava/src/atlantis/data/AHECData.java
+++ /dev/null
@@ -1,574 +0,0 @@
-package atlantis.data;
-
-import atlantis.event.*;
-import atlantis.geometry.ACalorimeterDetector;
-import atlantis.globals.AGlobals;
-import atlantis.graphics.ACoord;
-import atlantis.output.ALogInterface;
-import atlantis.output.AOutput;
-import atlantis.projection.AProjection2D;
-import atlantis.projection.AProjectionFZ;
-import atlantis.projection.AProjectionRZ;
-import atlantis.projection.AProjectionYX;
-import atlantis.utils.AAtlantisException;
-import atlantis.utils.AHashMap;
-import atlantis.utils.AIdHelper;
-import atlantis.utils.AMath;
-import atlantis.utils.AUtilities;
-import atlantis.utils.ALogger;
-import java.io.IOException;
-import com.Ostermiller.util.CSVParser;
-
-import java.io.InputStream;
-import java.io.StringReader;
-import java.io.FileNotFoundException;
-
-
-/**
- * The Hadronic End Cap calorimeter.
- *
- * @author Eric Jansen
- */
-public class AHECData extends ACalorimeterData
-{
- private static ALogger logger = ALogger.getLogger(AHECData.class);
-
- // data for real pulse shapes plots
- private int numSamplings = 0;
- private int[][] adcCounts = null;
- private float[] cellTime = null;
- private int[] cellGain = null;
- private float[] cellPedestal = null;
- private float[] adc2Mev = null;
- private static boolean pulseShapesDataAvailable = false;
- private static final String LOOKUP_TABLE_FILE =
- AGlobals.instance().getHomeDirectory() + "configuration" +
- System.getProperty("file.separator") +
- "rpsplt_hec.csv";
- // number of lookup table values for real pulse shapes plots calculation
- private static final short NUMBER_OF_LOOKUP_VALUES = 800;
-
-
-
- AHECData(AHashMap p, AEvent e)
- {
- super(p,e);
-
- for (int i = 0; i < numData; i++)
- {
- try
- {
- side[i] = (byte) AIdHelper.larBarrelEndcap(id[i]);
- etaIndex[i] = (short) AIdHelper.larEta(id[i]);
- phiIndex[i] = (short) AIdHelper.larPhi(id[i]);
- sampling[i] = AIdHelper.larSampling(id[i]);
- }
- catch (AAtlantisException ex)
- {
- logger.error("Problem decoding ID " + id[i] + " in " + CALORIMETER_NAME + ": " + ex.getMessage());
- side[i] = 0;
- etaIndex[i] = -1;
- phiIndex[i] = -1;
- sampling[i] = -1;
- }
- }
-
- makeHitToGeometryMapping();
- for (int i = 0; i < et.length; ++i)
- {
- et[i] = Math.abs(energy[i] / (float) Math.cosh(eta[i]));
- }
-
- // Collect some constants we need for the histograms.
- for (int i = 0; i < ACalorimeterDetector.count(); i++)
- {
-
- if (ACalorimeterDetector.get(i).getName().indexOf(CALORIMETER_NAME) >= 0)
- {
- if (innerR == 0.0 || ACalorimeterDetector.get(i).getRMin() < innerR)
- {
- innerR = ACalorimeterDetector.get(i).getRMin();
- }
- if (innerZ == 0.0 || ACalorimeterDetector.get(i).getZMin() < innerZ)
- {
- innerZ = ACalorimeterDetector.get(i).getZMin();
- }
- if (phiGranularity == 0.0 || ACalorimeterDetector.get(i).getDeltaPhi() < phiGranularity)
- {
- phiGranularity = ACalorimeterDetector.get(i).getDeltaPhi();
- }
- if (etaGranularity == 0.0 || ACalorimeterDetector.get(i).getDeltaEta() < etaGranularity)
- {
- etaGranularity = ACalorimeterDetector.get(i).getDeltaEta();
- }
- if (outerEta == 0.0 || ACalorimeterDetector.get(i).getEtaMax() > outerEta)
- {
- outerEta = ACalorimeterDetector.get(i).getEtaMax();
- }
- }
-
- if (outerR == 0.0 || ACalorimeterDetector.get(i).getRMax() > outerR)
- {
- outerR = ACalorimeterDetector.get(i).getRMax();
- }
- if (outerZ == 0.0 || ACalorimeterDetector.get(i).getZMax() > outerZ)
- {
- outerZ = ACalorimeterDetector.get(i).getZMax();
- }
- }
-
- // Add a little bit of extra margin to prevent binning errors due to
- // rounding of numbers.
- outerEta += etaGranularity;
-
- // read in HEC data from real pulse shapes plots
- readPulseShapePlotData(p);
-
- }
-
-
-
- private void readPulseShapePlotData(AHashMap p)
- {
- // read ADCCounts and cell data for real pulse shapes plots
- adcCounts = super.getADCCountsData(p);
-
- // read LAr digits (cell data) for real pulse shapes plots
- cellTime = (p.get("cellTime") != null) ? p.getFloatArray("cellTime") : null;
- cellGain = (p.get("cellGain") != null) ? p.getIntArray("cellGain") : null;
- cellPedestal = (p.get("cellPedestal") != null) ? p.getFloatArray("cellPedestal") : null;
- adc2Mev = (p.get("adc2Mev") != null) ? p.getFloatArray("adc2Mev") : null;
-
- pulseShapesDataAvailable = false;
- if(adcCounts != null && cellTime != null && cellGain != null &&
- cellPedestal != null && adc2Mev != null)
- {
- pulseShapesDataAvailable = true;
- numSamplings = adcCounts[0].length;
-
- logger.debug(CALORIMETER_NAME +
- ": data for real pulse shape plots available");
-
- if(ACalorimeterRPSPLT.areHECLookupTablesInitialized())
- {
- logger.debug(CALORIMETER_NAME +
- ": lookup tables have already been read in");
- }
- else
- {
- logger.debug(CALORIMETER_NAME +
- ": lookup table values have not been read in yet\n" +
- " trying to read file: " + LOOKUP_TABLE_FILE);
-
- try
- {
- readLookupTableFile();
- logger.debug(CALORIMETER_NAME +
- ": values from " + LOOKUP_TABLE_FILE +
- " successfully read in");
- }
- catch(AAtlantisException ex)
- {
- logger.debug(CALORIMETER_NAME +
- ": reading " + LOOKUP_TABLE_FILE +
- " failed, real pulse shapes plots will not " +
- "be available, reason: " + ex.getMessage(), ex);
- pulseShapesDataAvailable = false;
- }
- }
- }
-
- } // readPulseShapePlotData() -------------------------------------------
-
-
-
- /**
- * Returns info about a selected hit (for picking)
- *
- * @param index int hit index
- * @return String info
- */
- public String getHitInfo(int index)
- {
- int simpleOutput = AGlobals.instance().getSimpleOutput();
- if(simpleOutput>0){
- String output = getNameScreenName()+" index: " + index;
- if(simpleOutput==1 || simpleOutput==3)
- output+= "\n ET="+String.format("%.3f",et[index])+" GeV\n "+
- AMath.ETA+" = "+String.format("%.3f",eta[index])+"\n "+
- AMath.PHI+" = "+String.format("%.3f",Math.toDegrees(phi[index]))+AMath.DEGREES;
- if(simpleOutput==2 || simpleOutput==3)
- output+= "\n Ex="+String.format("%.3f",et[index]*Math.cos(phi[index]))+" GeV "+
- "\n Ey="+String.format("%.3f",et[index]*Math.sin(phi[index]))+" GeV "+
- "\n Ez="+String.format("%.3f",et[index]*Math.sinh(eta[index]))+" GeV ";
- return output;
- }
-
- String t = "";
- String cellInfo = "";
-
- t = super.getHitInfo(index);
-
- cellInfo += "\n cell time = ";
- cellInfo += (cellTime != null) ? Float.toString(cellTime[index]) +
- " ns" : "n/a";
- cellInfo += "\n cell gain = ";
- cellInfo += (cellGain != null) ? Integer.toString(cellGain[index]) : "n/a";
- cellInfo += "\n cell pedestal = ";
- cellInfo += (cellPedestal != null) ? Float.toString(cellPedestal[index]) +
- " ADC counts" : "n/a";
-
- cellInfo += "\n ADC 2 MeV = ";
- if(adc2Mev == null)
- {
- cellInfo += "n/a";
- }
- else
- {
- // subtag adc2Mev was available in the event file
- if(adc2Mev[index] != -1)
- {
- // other than -1: the factor was available in
- // Athena (database) for this particular cell
- cellInfo += Float.toString(adc2Mev[index]) + " (from database)";
- }
- else
- {
- // -1 -> the factor wasn't available in Athena (database),
- // use hardcoded constant for this particular cell
- cellInfo += "-1 (n/a in database)";
- // see comment at the getADC2MevFactorPredefined() method
- //, using predefined " +
- // Float.toString(getADC2MevFactorPredefined());
- }
- }
-
- cellInfo += pulseShapesDataAvailable ? "" :
- "\n data for real pulse shapes plot n/a";
-
- return t + cellInfo;
-
- } // getHitInfo() -------------------------------------------------------
-
- @Override //ACalorimeterData
- //Gives the hit time for this cell
- protected double getTime(int hit)
- {
- if (cellTime == null) return 0.0;
- else return cellTime[hit];
- }
-
-// /**
-// * Determines adc2Mev factor value for a cell. The number either comes
-// * with the event file (adc2Mev subtag), but sometimes is not available
-// * in Athena (in the database) which is indicated by -1 in the event file
-// * for a particular cell. In this case, use predefined constant in this
-// * method.
-// *
-// * zdenek (2008-09-15):
-// * These predefined values (which are used if adc2Mev factor is -1) should
-// * no longer be used. if the factor is not present, do not plot the pulse
-// * shape, just the ADC counts as these values are non-sense. The method
-// * and references to it should be removed after some time (if calo people
-// * don't change their mind to pre-define some other values and use those)
-//
-// * @param index int
-// * @return String
-// */
- /*
- private float getADC2MevFactorPredefined()
- {
-
- float r = 13.9f;
- return r;
-
- } // getADC2MevFactorPredefined() ---------------------------------------
- */
-
-
-
- /**
- * readLookupTableFile() reads in comma separated values (CSV) file
- * with HEC real pulse shapes plots time and amplitude lookup values
- * @param fileName String
- * @throws AAtlantisException
- */
- private void readLookupTableFile() throws AAtlantisException
- {
- try
- {
- InputStream is = AUtilities.getFileAsStream(LOOKUP_TABLE_FILE);
- CSVParser parser = new CSVParser(is);
- parser.setCommentStart("#");
- String arrayName = null;
-
- while((arrayName = parser.nextValue()) != null)
- {
- String valueArray = parser.nextValue(); // shall now contain all values
- CSVParser parserArray = new CSVParser(new StringReader(valueArray));
- String[][] s = parserArray.getAllValues();
- if("HEC_AMPLITUDE".equals(arrayName))
- {
- ACalorimeterRPSPLT.HEC_AMPLITUDE =
- getLookupTableArray(s, NUMBER_OF_LOOKUP_VALUES);
- }
- else if("HEC_TIME".equals(arrayName))
- {
- ACalorimeterRPSPLT.HEC_TIME =
- getLookupTableArray(s, NUMBER_OF_LOOKUP_VALUES);
- }
- }
- }
- catch(FileNotFoundException e)
- {
- throw new AAtlantisException("could not find file: " +
- LOOKUP_TABLE_FILE);
- }
- catch(IOException e)
- {
- throw new AAtlantisException("exception while reading file: " +
- LOOKUP_TABLE_FILE);
- }
- catch(AAtlantisException e)
- {
- throw e;
- }
-
- } // readLookupTableFile() ----------------------------------------------
-
-
-
- protected void applyCuts()
- {
- super.applyCuts();
- cut("CutsCalo", "HECET", "HECET", et);
- cut("CutsCalo", "HECEnergy", "HECEnergy", energy);
-
- int cutSub = parameterStore.get("CutsCalo", "HEC").getI();
- if(cutSub != -1)
- {
- cutArray(side, cutSub, "Endcap");
- }
-
- }
-
- /**
- * Returns the name of the parameter group.
- *
- * @return String parameter group
- */
- public String getParameterGroup()
- {
- return "HEC";
- }
-
- /**
- * Returns the name of the datatype.
- *
- * @return String datatype
- */
- public String getName()
- {
- return "HEC";
- }
-
- /**
- * Returns the displayed name of datatype
- *
- * @return String screen name
- */
- public String getNameScreenName()
- {
- return "HEC";
- }
-
- /**
- * Returns the type of calorimeter (ECAL/HCAL) for a hit.
- *
- * @param index int hit index
- * @return String calorimeter type
- */
- public String getCalorimeterType(int index)
- {
- return "HCAL";
- }
-
- /**
- * Returns the histograms for this projection.
- *
- * @param projection AProjection2D current projection
- * @return ACoord[] polygons representing histograms
- */
- protected ACoord[] getUserHistograms(AProjection2D projection)
- {
- ACoord[] data = ACoord.NO_HISTOGRAMS;
- int mode = parameterStore.get("YX", "Mode").getI();
- if (projection instanceof AProjectionRZ)
- data = getRZHistograms();
- else if (projection instanceof AProjectionFZ)
- data = getFZHistograms();
- else if ((projection instanceof AProjectionYX) && (mode == AProjectionYX.MODE_HEC_1 ||
- mode == AProjectionYX.MODE_HEC_2 || mode == AProjectionYX.MODE_HEC_3 ||
- mode == AProjectionYX.MODE_HEC_4 || mode == AProjectionYX.MODE_HEC_SUMMED))
- data = getYXHistograms();
- return projection.nonLinearTransform(data);
- }
-
-
-
-// /**
-// * Call util class which plots cell pulse shapes provided that
-// * all real pulse shapes data is available
-// * Functions calculates values of real pulse shape calculated in the method
-// * getPhysicsPulseShape().
-// * This method is called from pick interaction.
-// *
-// * @param index int
-// */
- /*public void plotPulseShapes(int index)
- {
-
- if(pulseShapesDataAvailable)
- {
- String title = getPulseTitleString(index);
-
- int[][] adcCountsLocal = new int[][] { adcCounts[index] };
-
- if(super.checkADCCountsAvailability(adcCountsLocal))
- {
- // adc counts are available
- logger.debug(CALORIMETER_NAME + " adc counts (digits) are " +
- "available for pulse shapes plots for this cell.");
- }
- else
- {
- AOutput.append("\nADC counts are not available for this cell, " +
- "can't plot pulse shapes.", ALogPane.WARNING);
- return;
- }
-
-
- float[] time = ACalorimeterRPSPLT.HEC_TIME; // lookup tables
- float[] amplitude = ACalorimeterRPSPLT.HEC_AMPLITUDE; // lookup tables
-
- // step - starting from 1, need to get step numbers within
- // number of ADC samples (adcCounts[0].length)
- double step = (adcCounts[0].length - 1) / (float) NUMBER_OF_LOOKUP_VALUES;
- double[][] realPulse = new double[1][NUMBER_OF_LOOKUP_VALUES]; // 1 channel
- double d = 1.0;
- // if adc2Mev != -1 -> use value from event file, otherwise predefined value
- // see comment at the getADC2MevFactorPredefined() method
- // factor variable is used as a flag whether or not to plot pulse shape,
- // if is -1 (adc2Mev not available), then want to see only the adc counts
- // and don't calculate the pulse shapes
- // getADC2MevFactorPredefined(index) is no longer in use, see comment at it
- float factor = adc2Mev[index];
-
- double energyLocal = energy[index] * 1000.0 / factor;
- try
- {
- if(factor != -1)
- {
- for(int i = 0; i < NUMBER_OF_LOOKUP_VALUES; i++)
- {
- d += step;
- realPulse[0][i] = super.getPhysicsPulseShape(d, cellTime[index],
- cellPedestal[index], energyLocal,
- amplitude, time, NUMBER_OF_LOOKUP_VALUES);
- }
- }
- }
- catch(AAtlantisException aaex)
- {
- AOutput.append(aaex.getMessage(), ALogPane.WARNING);
- return;
- }
-
- if(factor != -1)
- {
- logger.debug("adc2Mev factor available, plotting full plot.");
- APulseShapePlot.plotRealPulseShapes(adcCountsLocal, realPulse,
- step, null, title);
- }
- else
- {
- logger.debug("adc2Mev factor not available, plotting just adc counts.");
- APulseShapePlot.plotADCCounts(adcCountsLocal, title, null);
- }
-
- } // if(pulseShapesDataAvailable)
- else
- {
- return;
- }
-
- }*/ // plotPulseShapes() --------------------------------------------------
-
- @Override
- protected int[][] getADCCounts(int index) {
-
- if (pulseShapesDataAvailable) {
- return new int[][]{adcCounts[index]};
- } else {
- return null;
- }
- }
-
- /**
- * Calculate local time for pulse shape plots
- */
- protected double getLocalTime(double xTime, double cellTime, int numSamplings) {
- int nominalPeakSample = (int)(numSamplings / 2.);
- return ((xTime - nominalPeakSample + 3) * 25.0) - cellTime;
- }
-
- @Override
- protected double[][] getPulseShape(int index) {
-
- float[] time = ACalorimeterRPSPLT.HEC_TIME; // lookup tables
- float[] amplitude = ACalorimeterRPSPLT.HEC_AMPLITUDE; // lookup tables
-
- // step - starting from 1, need to get step numbers within
- // number of ADC samples (adcCounts[0].length)
- double step = getPulseStep(index);
- double[][] realPulse = new double[1][NUMBER_OF_LOOKUP_VALUES]; // 1 channel
- double d = 1.0;
- // if adc2Mev != -1 -> use value from event file, otherwise predefined value
- // see comment at the getADC2MevFactorPredefined() method
- // factor variable is used as a flag whether or not to plot pulse shape,
- // if is -1 (adc2Mev not available), then want to see only the adc counts
- // and don't calculate the pulse shapes
- // getADC2MevFactorPredefined(index) is no longer in use, see comment at it
- float factor = adc2Mev[index];
-
- double energyLocal = energy[index] * 1000.0 / factor;
- try {
- if (factor != -1) {
- for (int i = 0; i < NUMBER_OF_LOOKUP_VALUES; i++) {
- d += step;
- double localTime = getLocalTime(d, cellTime[index], this.numSamplings);
- realPulse[0][i] = super.getPhysicsPulseShape(localTime,
- cellPedestal[index], energyLocal,
- amplitude, time, NUMBER_OF_LOOKUP_VALUES);
- }
- }
- } catch (AAtlantisException aaex) {
- AOutput.append(aaex.getMessage(), ALogInterface.WARNING);
- return null;
- }
-
- if (factor != -1) {
- logger.debug("adc2Mev factor available, plotting full plot.");
- return realPulse;
- } else {
- logger.debug("adc2Mev factor not available, plotting just adc counts.");
- return null;
- }
- }
-
- @Override
- protected double getPulseStep(int index) {
- return (adcCounts[0].length - 1) / (float) NUMBER_OF_LOOKUP_VALUES;
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/data/AHelix.java b/graphics/AtlantisJava/src/atlantis/data/AHelix.java
deleted file mode 100644
index 98e397b2275..00000000000
--- a/graphics/AtlantisJava/src/atlantis/data/AHelix.java
+++ /dev/null
@@ -1,854 +0,0 @@
-package atlantis.data;
-
-import atlantis.globals.AGlobals;
-import atlantis.parameters.APar;
-import atlantis.parameters.AParameter;
-import atlantis.parameters.AParameterUtilities;
-import atlantis.projection.AProjectionVP;
-import atlantis.utils.A3Vector;
-import atlantis.utils.ALogger;
-import atlantis.utils.AMath;
-
-/**
- * Base class for tracks with perigee parameters. Includes code for drawing
- * helices as a function of the helix angle alpha.
- *
- * @author Eric Jansen
- */
-public class AHelix {
-
- private final static ALogger logger = ALogger.getLogger(AHelix.class);
-
- // Constants
- public static final double MIN_RADIUS_PHI = 2.;
- public static final double TRACKER_RADIUS = 108.;
- public static final double TRACKER_LENGTH = 270.;
- public static final double SOLENOID_RADIUS = 125.;
- public static final double SOLENOID_LENGTH = 280.;
- protected static final int NUM_HELIX_POINTS = 30;
-
- // Parameters from the config/GUI we need
- private static double curvature = -1;
-
- // Vertex w.r.t. which we define the perigee parameters
- private float xVtx, yVtx, zVtx;
-
- // Perigee parameters for the track
- private float d0, phi0, z0, cotanTheta, pt;
-
- // Additional space points outside the solenoid (muon tracks)
- private float extraX[] = null;
- private float extraY[] = null;
- private float extraZ[] = null;
-
- // Covariance matrix
- private double[][] cov = null;
-
- // Center point, radius and correction factors for the helix
- private double xC, yC, R, dr1, dr2, dz1;
-
- // Sign of alpha, determines direction of curvature of the helix
- private float S;
-
- // Alpha value where the helix crosses MIN_RADIUS_PHI. This is the starting
- // value for all the phi-based projections, since phi is undefined at rho=0.
- private double alphaMin = 0.;
-
- // Alpha value at which the helix meets its last space point or where it
- // exits the tracker if no space points were defined.
- private double alphaMax = Math.PI;
-
- // Alpha value at which the helix leaves the solenoidal field. When helices
- // are drawn beyond this value, for example when extrapolating to the
- // calorimeters, they switch from a helix to a straight line here.
- private double alphaSolenoid = Math.PI;
-
- private static final APar parameterStore = APar.instance();
-
- AHelix(AOldHelix helix) {
- this((float)helix.d0, (float)helix.z0, (float)helix.phi0, (float)helix.tL, (float)helix.pT);
- }
-
- AHelix(float rhoVertex, float phiVertex, float zVertex,
- float pTTrack, float phiTrack, float etaTrack, int charge, float rhoEndVertex) {
-
- this(rhoVertex, phiVertex, zVertex, pTTrack, phiTrack, etaTrack, charge);
- this.alphaMax = getAlphaExtrapolated(rhoEndVertex, TRACKER_LENGTH);
- }
-
- AHelix(float rhoVertex, float phiVertex, float zVertex,
- float pTTrack, float phiTrack, float eta, int charge) {
-
- this(0.f, 0.f, phiTrack, (float)AMath.tanLambda(eta), charge*Math.abs(pTTrack),
- (float)(rhoVertex*Math.cos(phiVertex)), (float)(rhoVertex*Math.sin(phiVertex)), zVertex);
- }
-
- AHelix(float d0, float z0, float phi0, float tL, float pT, float[][] cov) {
- this(d0, z0, phi0, tL, pT);
- this.setCovariance(cov);
- }
-
- AHelix(float d0, float z0, float phi0, float cotanTheta, float pt) {
- this(d0, z0, phi0, cotanTheta, pt, 0.f, 0.f, 0.f);
- }
-
- /**
- * Construct a new track from its perigee parameters.
- * @param d0 transverse impact parameter
- * @param z0 longitudinal impact parameter
- * @param phi0 phi of the point of closest approach in degrees
- * @param cotanTheta cotan(theta), angle of the track in the RZ-plane
- * @param pt signed transverse momentum, sign encodes charge
- * @param xVtx vertex x-coordinate
- * @param yVtx vertex y-coordinate
- * @param zVtx vertex z-coordinate
- */
- AHelix(float d0, float z0, float phi0, float cotanTheta, float pt,
- float xVtx, float yVtx, float zVtx) {
-
- this.xVtx = xVtx;
- this.yVtx = yVtx;
- this.zVtx = zVtx;
- this.d0 = d0;
- this.z0 = z0;
- this.phi0 = (float)Math.toRadians(phi0);
- this.cotanTheta = cotanTheta; // cotan(theta) = tan(lambda)
- this.pt = Math.abs(pt);
- this.S = -Math.signum(pt);
- this.dr1 = 0;
- this.dr2 = 0;
- this.dz1 = 0;
-
- // Curvature/pT relation, magnetic field strength.
- if (AHelix.curvature <= 0) {
- AParameter curvatureParameter = parameterStore.get("Event", "Curvature");
- if (curvatureParameter != null) {
- AHelix.curvature = curvatureParameter.getD();
- } else {
- AHelix.curvature = 100/0.6;
- logger.error("Curvature parameter not found,"
- + " defaulting to " + AHelix.curvature);
- }
- }
-
- // Radius and center point of the helix. The radius is limited to 1e6,
- // which on the scale of our tracker corresponds to a straight line.
- // This allows cosmics without B-field to be drawn with the same code.
- this.R = Math.min(AHelix.curvature * this.pt, 1e6);
- this.xC = xVtx - (this.S*this.R + this.d0) * Math.sin(this.phi0);
- this.yC = yVtx + (this.S*this.R + this.d0) * Math.cos(this.phi0);
-
- // The alpha value from which the helix start.
- this.alphaMin = 0.;
-
- // Calculate when this helix leaves the tracker. This is either (1)
- // through the barrel or (2) through the endcap. The endcap expression
- // is just the function getZ(alpha) reversed. Take the minumum of the
- // two, so whatever happens first.
- this.alphaMax = getAlphaCylinder(TRACKER_RADIUS, TRACKER_LENGTH);
-
- // Same as above, but now for the solenoid.
- this.alphaSolenoid = getAlphaCylinder(SOLENOID_RADIUS, SOLENOID_LENGTH);
- }
-
- /**
- * Fit the radius of the helix to the given points. The radius is described
- * by R + dr1 * alpha + dr2 * alpha^2.
- * @param x array of x coordinates of points on the helix
- * @param y array of y coordinates of points on the helix
- * @param z array of z coordinates of points on the helix
- */
- public double setPoints(float[] x, float[] y, float[] z, int numPoints) {
-
- this.dr1 = 0.;
- this.dr2 = 0.;
- this.dz1 = 0.;
-
- // Points outside the solenoid are taken as is and added to the end of the track
- while (numPoints > 0 && (z[numPoints-1] > SOLENOID_LENGTH
- || Math.hypot(x[numPoints-1], y[numPoints-1]) > SOLENOID_RADIUS)) {
-
- numPoints--;
- }
-
- if (x.length > numPoints) {
- extraX = new float[x.length - numPoints];
- extraY = new float[y.length - numPoints];
- extraZ = new float[z.length - numPoints];
-
- for(int i=0; i<x.length - numPoints; i++) {
- extraX[i] = x[numPoints+i];
- extraY[i] = y[numPoints+i];
- extraZ[i] = z[numPoints+i];
- }
- }
-
- if (numPoints == 1) {
-
- // Just one point, only do a linear in/decrease of R and Z
- double alpha = getAlpha(x[0], y[0]);
- this.dr1 = (getRadius(x[0], y[0]) - this.R) / alpha;
- this.dz1 = (z[0] - getZ(alpha)) / alpha;
-
- // Draw helix until this point
- this.alphaMax = alpha;
-
- } else {
-
- // Several points, perform a least-squares fit using the functions
- // R = R + dr1 * alpha + dr2 * alpha^2 and Z = Z + dz1 * alpha.
- double a2 = 0., a3 = 0., a4 = 0.;
- double dRa = 0., dRa2 = 0., dZa = 0.;
- for (int i=0; i<numPoints; i++) {
- double alpha = getAlpha(x[i], y[i]);
- double rho = getRadius(x[i], y[i]);
-
- //a1 += alpha;
- a2 += Math.pow(alpha, 2.);
- a3 += Math.pow(alpha, 3.);
- a4 += Math.pow(alpha, 4.);
- dRa += (rho - this.R) * alpha;
- dRa2 += (rho - this.R) * alpha * alpha;
-
- dZa += (z[i] - getZ(alpha)) * alpha;
-
- if (i == 0 || alpha > this.alphaMax) {
- this.alphaMax = alpha;
- }
- }
-
- // Quadratic
- this.dr1 = (dRa / a3 - dRa2 / a4) / (a2 / a3 - a3 / a4);
- this.dr2 = (dRa / a2 - dRa2 / a3) / (a3 / a2 - a4 / a3);
-
- // Linear
- this.dz1 = dZa / a2;
-
- }
-
- // Return relative correction; distance from the original position at
- // the end point, divided by the length of the curve.
- double change = Math.hypot(this.dr1 + this.alphaMax*this.dr2, this.dz1) / this.R;
- logger.debug("Fitting changed R(maxAlpha) by " + change);
- return change;
- }
-
- /**
- * Sets the covariance matrix of the track.
- * @param cov new covariance matrix
- */
- public final void setCovariance(float[][] cov) {
-
- // Covariance needs to be double[][] for the fitting classes
- this.cov = new double[cov.length][cov[0].length];
-
- for (int i=0; i<cov.length; i++) {
- for (int j=0; j<cov[i].length; j++) {
- this.cov[i][j] = cov[i][j];
- }
- }
- }
-
- /**
- * Sets the covariance matrix of the track.
- * @param cov new covariance matrix
- */
- public final void setCovariance(double[][] cov) {
- this.cov = cov;
- }
-
- /**
- * Returns the starting alpha value for the phi-based projections.
- * @return alpha value
- */
- public double getAlphaMin() {
- return alphaMin;
- }
-
- /**
- * Returns the alpha value at the end of the helix
- * @return alpha value
- */
- public double getAlphaMax() {
- return alphaMax;
- }
-
- /**
- * Returns the alpha value at which the track exits the solenoidal field
- * @return alpha value
- */
- public double getAlphaSolenoid() {
- return alphaSolenoid;
- }
-
- /**
- * Calculates the alpha coordinate for a specific point. Alpha is the angle
- * from the center point of the helix to the point. For the helix The angle
- * should be positive and alpha=0 is the perigee. Returns negative values
- * for points before the perigee point.
- * @param x x coordinate of a point
- * @param y y coordinate of a point
- * @return alpha
- */
- public double getAlpha(double x, double y) {
- // Get the alpha parameter for this point, in the range 0-2*pi
- double alpha = AMath.nearestPhiRadians(this.S * (Math.atan2((y - this.yC), (x - this.xC)) - this.phi0) + Math.PI/2.);
-
- // When dealing with a real space point, alpha can of course be slightly negative
- if (alpha > 3./2. * Math.PI) alpha -= 2.*Math.PI;
-
- return alpha;
- }
-
- /**
- * Calculates the alpha coordinate where the helix has the given distance
- * from the origin. Alpha is the angle from the center point of the helix to
- * the point. The angle is always positive and alpha=0 is the perigee.
- * @param rho radius with respect to the origin
- * @return alpha
- */
- public final double getAlphaCylinder(double rho, double z) {
-
- double alphaZ, alphaRho;
- if (this.cotanTheta == 0) {
- alphaZ = Math.PI;
- } else {
- alphaZ = zVtx + (Math.signum(this.cotanTheta)*z - this.z0) / (this.cotanTheta * this.R + this.dz1);
- }
-
- // We take a circle centered around (0,0) with the requested radius
- // (rho) and intersect it with the helix (circle around (xC,yC) with
- // radius R. The distance between the centers of the two circles is D.
- double D = Math.hypot(this.xC, this.yC);
-
- // By equating the intersection points in both circles we obtain the
- // position of the intersection points as a distance d from (xC,yC)
- // along the line from center to center.
- double d = (this.R * this.R - rho * rho + D * D) / (2 * D);
-
- if (d >= this.R) {
- // Helix is fully outside the requested radius, return 0.
- alphaRho = 0;
- } else if (d <= -this.R) {
- // Helix is fully inside the requested radius, return pi.
- alphaRho = Math.PI;
- } else {
- // Helix needs to be stopped when it reaches requested radius.
- // Now the angle alpha is just the angle between the center-center
- // line and the line from (xC,yC) to the intersection point. The
- // helix is such that alpha is always taken positive, so it doesn't
- // matter which of the two intersection points we take. The cosine
- // of alpha is then simply the division of d by the radius of the
- // circle R. This method should never return an alpha outside the
- // solenoid, for the extrapolation there is getAlphaExtrapolated().
- alphaRho = Math.min(Math.acos(d / this.R), alphaSolenoid);
- }
-
- return Math.min(alphaRho, alphaZ);
- }
-
- /**
- * Calculates the pseudo alpha coordinate and if necessary extrapolates
- * beyond the curved part up to the given radius. Inside the solenoid this
- * method falls back to getAlphaCylinder, so it can be used for any radius.
- * The pseudo alpha coordinate is such that the distance along the curve is
- * R*alpha also for the straight part. This parameterization allow the
- * description of z to remain the same for any alpha.
- * @param rho radius to extrapolate to
- * @param z distance along the beam axis to extrapolate to
- * @return alpha
- */
- public final double getAlphaExtrapolated(double rho, double z) {
-
- // Check if the track actually makes it to the solenoid.
- if (this.alphaSolenoid >= Math.PI) {
- // If not, return the max alpha inside the tracker instead.
- return getAlphaCylinder(rho, z);
- }
-
- // Calculate the coordinates (xL,yL) of the last point inside the solenoid.
- double xL = getX(this.alphaSolenoid);
- double yL = getY(this.alphaSolenoid);
-
- // Check if we are actually outside the solenoid at this rho value
- if (rho < Math.hypot(xL, yL)) {
- // If not, return the normal alpha instead. For tracks that exit the
- // solenoid through the endcap this is also fine, z(alpha) is the
- // same inside and outside the field. So the max value returned is
- // valid either way.
- return getAlphaCylinder(rho, z);
- }
-
- double alphaZ, alphaRho;
- if (this.cotanTheta == 0) {
- alphaZ = Math.PI;
- } else {
- alphaZ = zVtx + (Math.signum(this.cotanTheta)*z - this.z0) / (this.cotanTheta * this.R + this.dz1);
- }
-
- // Calculate the direction of the track at the last point inside the solenoid,
- // this is the direction in which it will be extrapolated through the calorimeters.
- double dx = Math.cos(this.phi0 + this.S * this.alphaSolenoid);
- double dy = Math.sin(this.phi0 + this.S * this.alphaSolenoid);
-
- // Now we have for a point on the extrapolated track
- // x(alpha) = xL + dx * (alpha-this.alphaCurve)
- // y(alpha) = yL + dy * (alpha-this.alphaCurve)
- // Setting x^2+y^2 = rho^2 and solving for alpha then gives:
- double D = rho*rho - (xL*dy - yL*dx)*(xL*dy - yL*dx);
- if (D > 0) {
- alphaRho = this.alphaSolenoid - (xL*dx + yL*dy)/this.R + Math.sqrt(D)/this.R;
- } else {
- return Math.PI;
- }
-
- return Math.min(alphaRho, alphaZ);
- }
-
- /**
- * Calculate the distance between a point and the center of the helix.
- * @param x x coordinate of the point
- * @param y y coordinate of the point
- * @return distance between (x,y) and the center of the helix
- */
- private double getRadius(double x, double y) {
- return Math.hypot(x - xC, y - yC);
- }
-
- /**
- * Returns the x coordinate for a point on the helix parameterized by alpha.
- * @param alpha helix angular parameter
- * @return x coordinate
- */
- public double getX(double alpha) {
- // Correct the radius using the values obtained from the fit and calculate x
- double localR = R + dr1 * alpha + dr2 * alpha * alpha;
- if (alpha <= alphaSolenoid) {
- return xC - S * localR * Math.cos(phi0 + S * alpha + Math.PI/2.);
- } else {
- double xL = xC - S * localR * Math.cos(phi0 + S * alphaSolenoid + Math.PI/2.);
- return xL + R*Math.cos(phi0 + this.S * alphaSolenoid) * (alpha-alphaSolenoid);
- }
- }
-
- /**
- * Returns the y coordinate for a point on the helix parameterized by alpha.
- * @param alpha helix angular parameter
- * @return y coordinate
- */
- public double getY(double alpha) {
- // Correct the radius using the values obtained from the fit and calculate y
- double localR = R + dr1 * alpha + dr2 * alpha * alpha;
- if (alpha <= alphaSolenoid) {
- return yC - S * localR * Math.sin(phi0 + S * alpha + Math.PI/2.);
- } else {
- double yL = yC - this.S * localR * Math.sin(phi0 + this.S * alphaSolenoid + Math.PI/2.);
- return yL + R*Math.sin(phi0 + S * alphaSolenoid) * (alpha-alphaSolenoid);
- }
- }
-
- /**
- * Returns the rho coordinate for a point on the helix parameterized by alpha.
- * @param alpha helix angular parameter
- * @return rho coordinate
- */
- public double getRho(double alpha) {
- return Math.hypot(getX(alpha), getY(alpha));
- }
-
- public double getRhoVtx() {
- return Math.hypot(xVtx, yVtx);
- }
-
- /**
- * Returns the z coordinate for a point on the helix parameterized by alpha.
- * @param alpha helix angular parameter
- * @return z coordinate
- */
- public double getZ(double alpha) {
- // For z we don't use the corrected R, since it was calculated against
- // the uncorrected one.
- return z0 + cotanTheta * R * alpha + dz1 * alpha;
- }
-
- public double getZVtx() {
- return zVtx;
- }
-
- /**
- * Returns the phi coordinate of a point on the helix parameterized by alpha.
- * @param alpha helix angular parameter
- * @param useVertex calculate phi w.r.t. the primary vertex
- * @return phi coordinate
- */
- public double getPhi(double alpha, boolean useVertex) {
- if (useVertex) {
- return AParameterUtilities.phi(getX(alpha), getY(alpha));
- } else {
- return Math.toDegrees(Math.atan2(getY(alpha), getX(alpha)));
- }
- }
-
- /**
- * Return eta coordinate for a point on the helix parameterized by alpha.
- * @param alpha helix angular parameter
- * @param vsign side (-1/+1) of the split track in the v-plot, 0 for true eta
- * @return eta coordinate
- */
- public double getEta(double alpha, int vsign) {
- double rho = getRho(alpha);
- double z = getZ(alpha);
- double deta = Math.abs(AProjectionVP.getDeltaEta(rho, z));
-
- return AParameterUtilities.eta(z, rho) + vsign*deta;
- }
-
- /**
- * Returns an array representing the x coordinates of the helix between
- * alpha1 and alpha2.
- * @param alpha1 start alpha
- * @param alpha2 end alpha
- * @return x coordinates
- */
- public double[] getX(double alpha1, double alpha2) {
- int numPoints = NUM_HELIX_POINTS;
- if (alpha2 >= alphaMax && extraX != null) {
- numPoints += extraX.length;
- }
- double[] x = new double[numPoints];
-
- double dalpha = (alpha2 - alpha1) / (NUM_HELIX_POINTS-1);
- for (int i=0; i<NUM_HELIX_POINTS; i++) {
- x[i] = getX(alpha1 + i*dalpha);
- }
-
- for (int i=0; i<numPoints-NUM_HELIX_POINTS; i++) {
- x[NUM_HELIX_POINTS+i] = extraX[i];
- }
-
- return x;
- }
-
- /**
- * Returns an array representing the y coordinates of the helix between
- * alpha1 and alpha2.
- * @param alpha1 start alpha
- * @param alpha2 end alpha
- * @return y coordinates
- */
- public double[] getY(double alpha1, double alpha2) {
- int numPoints = NUM_HELIX_POINTS;
- if (alpha2 >= alphaMax && extraY != null) {
- numPoints += extraY.length;
- }
- double[] y = new double[numPoints];
-
- double dalpha = (alpha2 - alpha1) / (NUM_HELIX_POINTS-1);
- for (int i=0; i<NUM_HELIX_POINTS; i++) {
- y[i] = getY(alpha1 + i*dalpha);
- }
-
- for (int i=0; i<numPoints-NUM_HELIX_POINTS; i++) {
- y[NUM_HELIX_POINTS+i] = extraY[i];
- }
-
- return y;
- }
-
- /**
- * Returns an array representing the z coordinates of the helix between
- * alpha1 and alpha2.
- * @param alpha1 start alpha
- * @param alpha2 end alpha
- * @return z coordinates
- */
- public double[] getZ(double alpha1, double alpha2) {
- int numPoints = NUM_HELIX_POINTS;
- if (alpha2 >= alphaMax && extraZ != null) {
- numPoints += extraZ.length;
- }
- double[] z = new double[numPoints];
-
- double dalpha = (alpha2 - alpha1) / (NUM_HELIX_POINTS-1);
- for (int i=0; i<NUM_HELIX_POINTS; i++) {
- z[i] = getZ(alpha1 + i*dalpha);
- }
-
- for (int i=0; i<numPoints-NUM_HELIX_POINTS; i++) {
- z[NUM_HELIX_POINTS+i] = extraZ[i];
- }
- return z;
- }
-
- /**
- * Returns an array representing the rho coordinates of the helix between
- * alpha1 and alpha2.
- * @param alpha1 start alpha
- * @param alpha2 end alpha
- * @param signed return signed rho values for use in RZ
- * @return rho coordinates
- */
- public double[] getRho(double alpha1, double alpha2, boolean signed) {
- int numPoints = NUM_HELIX_POINTS;
- if (alpha2 >= alphaMax && extraX != null && extraY != null) {
- numPoints += extraX.length;
- }
- double[] rho = new double[numPoints];
-
- double sign = 1.;
- if (signed) {
- AParameter phiPar = parameterStore.get("RZ", "Phi");
- if (phiPar != null) {
- double phi = getPhi((alpha1+alpha2)/2, false);
- double diff = Math.toRadians(Math.abs(phi - phiPar.getD()));
- if (diff > Math.PI / 2. && diff <= 3 * Math.PI / 2.) {
- sign = -1.;
- }
- } else {
- logger.error("Could not read RZ cutting plane parameter");
- }
- }
-
- double dalpha = (alpha2 - alpha1) / (NUM_HELIX_POINTS-1);
- for (int i=0; i<NUM_HELIX_POINTS; i++) {
- rho[i] = sign * getRho(alpha1 + i*dalpha);
- }
-
- for (int i=0; i<numPoints-NUM_HELIX_POINTS; i++) {
- rho[NUM_HELIX_POINTS+i] = sign * Math.hypot(extraX[i], extraY[i]);
- }
-
- return rho;
- }
-
- /**
- * Returns an array representing the phi coordinates of the helix between
- * alpha1 and alpha2.
- * @param alpha1 start alpha
- * @param alpha2 end alpha
- * @param vplot return all points twice for use in the v-plot
- * @return phi coordinates
- */
- public double[] getPhi(double alpha1, double alpha2, boolean vplot) {
- int numPoints = NUM_HELIX_POINTS;
- if (vplot) {
- numPoints += NUM_HELIX_POINTS-1;
- } else if (alpha2 >= alphaMax && extraX != null && extraY != null) {
- numPoints += extraX.length;
- }
- double[] phi = new double[numPoints];
-
- double dalpha = (alpha2 - alpha1) / (NUM_HELIX_POINTS-1);
- for (int i=0; i<NUM_HELIX_POINTS; i++) {
- phi[i] = getPhi(alpha1 + i*dalpha, true);
- if (vplot) phi[numPoints-i-1] = phi[i];
- }
-
- if (!vplot) {
- for (int i=0; i<numPoints-NUM_HELIX_POINTS; i++) {
- phi[NUM_HELIX_POINTS+i] = AParameterUtilities.phi(extraX[i], extraY[i]);
- }
- }
-
- // Minimise distance from one point to the next to avoid phi wrapping
- // around: use {25, 10, -5} and not {25, 10, 355}.
- for (int i=1; i<phi.length; i++) {
- phi[i] = AMath.nearestPhiDegrees(phi[i], phi[i-1]);
- }
-
- return phi;
- }
-
- /**
- * Returns an array representing the eta coordinates of the helix between
- * alpha1 and alpha2.
- * @param alpha1 start alpha
- * @param alpha2 end alpha
- * @return eta coordinates
- */
- public double[] getEta(double alpha1, double alpha2) {
- double[] eta = new double[2*NUM_HELIX_POINTS - 1];
- double dalpha = (alpha2 - alpha1) / (NUM_HELIX_POINTS-1);
-
- for (int i=0; i<NUM_HELIX_POINTS; i++) {
- double alpha = alpha1 + i*dalpha;
- eta[i] = getEta(alpha, -1);
- eta[2*NUM_HELIX_POINTS-2-i] = getEta(alpha, +1);
- }
-
- return eta;
- }
-
- /**
- * Track momentum at perigee, x component
- * @return px
- */
- public double pX() {
- return this.pt * Math.cos(this.phi0);
- }
-
- /**
- * Track momentum at perigee, y component
- * @return py
- */
- public double pY() {
- return this.pt * Math.sin(this.phi0);
- }
-
- /**
- * Track momentum at perigee, z component
- * @return pz
- */
- public double pZ() {
- return this.pt * this.cotanTheta;
- }
-
- /**
- * Signed transverse momentum at perigee
- * @return pt
- */
- public double pT() {
- return -this.S * this.pt;
- }
-
- public A3Vector p() {
- return new A3Vector(pX(), pY(), pZ());
- }
-
- /**
- * Pseudorapidity of track from perigee
- * @return eta
- */
- public double eta() {
- return -Math.log(Math.hypot(cotanTheta, 1.) - cotanTheta);
- }
-
- /**
- * Phi of perigee
- * @return phi0
- */
- public double phi0() {
- return (float)Math.toDegrees(phi0);
- }
-
- /**
- * Returns the parameters of this helix in the "old" format. This is still
- * used by the AFit class to fit secondary vertices in Atlantis.
- * @return helix parameters
- */
- public double[] getPar() { // Used by unit tests and AVertexFit
- return new double[] {
- d0,
- z0,
- phi0 < 0 ? phi0 + 2*Math.PI : phi0,
- cotanTheta,
- -S/pt
- };
- }
-
- /**
- * Returns the covariance matrix of this helix as a an array of double.
- * @return covariance matrix
- */
- public double[][] getCovariance() {
- return cov;
- }
-
- public double getRhoEndVertex() {
- return getRho(alphaMax);
- }
-
- public void setPhiStartByXYPoint(double Vx, double Vy) {
- alphaMin = this.getAlpha(Vx, Vy);
- }
-
- public float d0() {
- return d0;
- }
-
- public float z0() {
- return z0;
- }
-
- public float cotanTheta() {
- return cotanTheta;
- }
-
- public double getXc() {
- return xC;
- }
-
- public double getYc() {
- return yC;
- }
-
- /**
- * Helper method for toString, formats a single line of information.
- * @param name variable name
- * @param value variable value
- * @param uncertainty variable uncertainty
- * @param units variable units
- * @return formatted string
- */
- private String formatInfo(String name, double value, double uncertainty, String units) {
- return formatInfo(name, String.format("%.3f", value),
- uncertainty > 0 ? String.format("%.3f", uncertainty) : null, units);
- }
-
- /**
- * Helper method for toString, formats a single line of information.
- * @param name variable name
- * @param value variable value
- * @param uncertainty variable uncertainty
- * @param units variable units
- * @return formatted string
- */
- private String formatInfo(String name, String value, String uncertainty, String units) {
- String output = "\n ";
- output += name + " = " + value;
- if (uncertainty != null)
- output += " " + AMath.PLUSMINUS + " " + uncertainty;
- if (units != null)
- output += " " + units;
-
- return output;
- }
-
- @Override
- public String toString() {
- String output = "";
-
- int simpleOutput = AGlobals.instance().getSimpleOutput();
- if (simpleOutput > 0) {
- if (simpleOutput == 1 || simpleOutput == 3) {
- output += formatInfo("PT", pt, 0., "GeV");
- output += formatInfo(AMath.ETA, eta(), 0., null);
- output += formatInfo(AMath.PHI, phi0(), 0., AMath.DEGREES);
- }
- if (simpleOutput == 2 || simpleOutput == 3) {
- output += formatInfo("Px", pt*Math.cos(phi0), 0., "GeV");
- output += formatInfo("Py", pt*Math.sin(phi0), 0., "GeV");
- output += formatInfo("Pz", pt*Math.sinh(eta()), 0., "GeV");
- output += formatInfo("Charge", S < 0 ? "+1" : "-1", null, null);
- }
-
- return output;
-
- } else {
-
- output += formatInfo("d0", d0, cov != null ? Math.sqrt(cov[0][0]) : 0., "cm");
- output += formatInfo("z0", z0, cov != null ? Math.sqrt(cov[1][1]) : 0., "cm");
-
- double pv[] = AParameterUtilities.getPrimaryVertex();
- output += formatInfo("|z0-zVtx|", Math.abs(z0-pv[2]), 0., "cm");
- output += formatInfo("phi0", phi0(), cov != null ? Math.toDegrees(Math.sqrt(cov[2][2])) : 0., AMath.DEGREES);
- output += formatInfo(" ", phi0, cov != null ? Math.sqrt(cov[2][2]) : 0., "rad");
- output += formatInfo("cotan(theta)", cotanTheta, cov != null ? Math.sqrt(cov[3][3]) : 0., null);
- output += formatInfo(AMath.ETA, eta(), cov != null ? Math.sqrt(cov[3][3] / (cotanTheta * cotanTheta + 1.0)) : 0., null);
- output += formatInfo("pT", pT(), 0., "GeV");
- output += formatInfo("p", AMath.getPFromPttL(pt, cotanTheta), 0., "GeV");
-
- return output;
- }
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/data/AHelixAODData.java b/graphics/AtlantisJava/src/atlantis/data/AHelixAODData.java
deleted file mode 100755
index 0c3934033e9..00000000000
--- a/graphics/AtlantisJava/src/atlantis/data/AHelixAODData.java
+++ /dev/null
@@ -1,178 +0,0 @@
-package atlantis.data;
-
-import atlantis.canvas.AWindow;
-import atlantis.event.AEvent;
-import atlantis.graphics.ACoord;
-import atlantis.graphics.AGraphics;
-import atlantis.parameters.AParameter;
-import atlantis.projection.AProjection2D;
-import atlantis.projection.AProjectionVP;
-import atlantis.utils.AHashMap;
-import atlantis.utils.AMath;
-
-public abstract class AHelixAODData extends AAODData
-{
- protected AHelix[] h = null;
-
- AHelixAODData(AHashMap p, AEvent e)
- {
- super(p,e);
- h = new AHelix[numData];
- float[] d0 = new float[numData];
- float[] z0 = new float[numData];
- float[] tl = new float[numData];
- for (int i = 0; i < numData; i++)
- {
- d0[i] = 0.0f;
- z0[i] = 0.0f;
- tl[i] = (float) AMath.tanLambda((double)eta[i]);
- h[i] = new AHelix(d0[i], z0[i], (float) Math.toDegrees(phi[i]), tl[i], pT[i]);
- }
- }
-
- private void drawHelix(AWindow window, AGraphics ag, AProjection2D projection)
- {
- int drawnAs = parameterStore.get("InDetTrack", "DrawnAs").getI();
- if (drawnAs == ATrackData.DRAW_NEWHELIX) {
-
- boolean showS3D = parameterStore.get("Data", "S3D").getStatus();
- AParameter shortV = parameterStore.get("VP", "ShortV");
-
- makeDrawList();
- double[][][] hv = new double[2][numDraw][];
- int[] index = new int[numDraw];
-
- for (int i=0; i<numDraw; i++) {
- int j = listdl[i];
- index[i] = j;
-
- double alphaMin = h[j].getAlphaExtrapolated(projection.getMinRho(), AHelix.TRACKER_LENGTH);
- double alphaMax = h[j].getAlphaExtrapolated(AProjectionVP.getRhoVPlot(), AHelix.TRACKER_LENGTH);
- if (shortV.getStatus() && !showS3D) {
- alphaMin = alphaMax - shortV.getD() * (alphaMax - alphaMin);
- }
-
- hv[0][i] = h[j].getEta(alphaMin, alphaMax);
- hv[1][i] = h[j].getPhi(alphaMin, alphaMax, true);
- }
-
- ag.draw(window.calculateDisplay(new ACoord(hv, index, this, ACoord.POLYLINES)));
-
- } else {
- // borrow the implementation in for tracks
- // phi wrap around is done in user coordinates, so we convert to user coordinates,
- // do the phi wrap around and convert back to display coordinates
- ag.draw(window.calculateDisplay(window.calculateUser(
- getVPDisplayHelices(window, projection)).includePhiWrapAround(projection.getName())
- ));
- }
- }
-
- // give back Drawable helices
- private ADHelix[] getHelices()
- {
- makeDrawList();
- ADHelix[] tempList = new ADHelix[numDraw];
-
- for (int i = 0; i < numDraw; i++)
- if (h != null && h[listdl[i]] != null)
- {
- tempList[i] = new ADHelix(h[listdl[i]]);
- if (tempList[i].getAStart() == tempList[i].getAEnd())
- {
- tempList[i] = null;
- }
- }
- else
- tempList[i] = null;
- return tempList;
- }
-
- private ACoord getVPDisplayHelices(AWindow window, AProjection2D projection)
- {
- boolean drawApex = parameterStore.get("VP", "DrawApex").getStatus();
- ADHelix[] dhelix = getHelices();
- int size = 2 * dhelix.length;
- if (drawApex)
- size = 3 * dhelix.length;
- double[][][] hv = new double[2][size][0];
- int[] index = new int[size];
- int[] indexIn = getDrawList();
- int num = 0;
-
- for (int j = 0; j < dhelix.length; ++j)
- if (dhelix[j] != null)
- {
- double s1 = dhelix[j].getAStart();
- double s2 = 179.;
-
- s1 = dhelix[j].intersectWithRadialCylinder(projection.getMinRho(), s1, s2);
- double sEnd = dhelix[j].intersectWithCylinder(true, AProjectionVP.getRhoVPlot(), true, AProjectionVP.getZVPlot());
-
- s2 = Math.max(Math.min(s2, sEnd), s1);
- // if the whole helix is to be drawn (which are unusual
- // helices, shorten it a little to avoid wraparound problems
- if (s1 == 0. && s2 == 180.)
- s2 = 179.;
- if (parameterStore.get("VP", "ShortV").getStatus() && !parameterStore.get("Data", "S3D").getStatus())
- s1 = s2 - parameterStore.get("VP", "ShortV").getD() * (s2 - s1);
- if (s2 > s1)
- {
- int signMin = -1;
- int signMax = 1;
- double h = 0;
- double v = 0;
- for (int sign = signMin; sign <= signMax; sign += 2)
- {
- // ugly must change structure at some point
- AProjectionVP.sign = sign;
- ACoord pointsOnHelix = dhelix[j].drawHelix(window, projection, s1, s2);
- hv[0][num] = pointsOnHelix.hv[0][0];
- hv[1][num] = pointsOnHelix.hv[1][0];
- index[num] = indexIn[j];
- h = hv[0][num][hv[0][num].length - 1];
- v = hv[1][num][hv[0][num].length - 1];
- num++;
- }
- if (drawApex)
- {
- int a = 3;
- int b = 7;
- hv[0][num] = new double[] { h - a, h + a, h, h, h - a, h + a };
- hv[1][num] = new double[] { v - b, v - b, v - b, v + b, v + b, v + b };
- index[num] = indexIn[j];
- num++;
- }
- }
- }
- return new ACoord(hv, index, this, ACoord.POLYLINES);
- }
-
- public void draw(AWindow window, AGraphics ag, AProjection2D projection)
- {
- if(projection instanceof AProjectionVP)
- {
- // since no d0 and z0 data is provided for AOD Electron and Muon
- // from event file, they are set to 0 manually, which is not
- // compatible with the primary vertex calculated in Atlantis, and
- // it will cause a wide and bizarre shape of 'v' drawn in V-Plot.
- // So the temparary solution is to set primary vertex to (0,0,0)
- // before drawing AOD Electron and Muon in V-Plot, and then restore
- // their values after.
- double[] primaryVtx=event.getPrimaryVertex();
- parameterStore.get("Event", "XVtx").setD(0.0);
- parameterStore.get("Event", "YVtx").setD(0.0);
- parameterStore.get("Event", "ZVtx").setD(0.0);
- // super.draw(window, ag, projection);
- drawHelix(window, ag, projection);
- parameterStore.get("Event", "XVtx").setD(primaryVtx[0]);
- parameterStore.get("Event", "YVtx").setD(primaryVtx[1]);
- parameterStore.get("Event", "ZVtx").setD(primaryVtx[2]);
- }
- else
- {
- super.draw(window, ag, projection);
- }
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/data/AHistogram.java b/graphics/AtlantisJava/src/atlantis/data/AHistogram.java
deleted file mode 100755
index 082b97de978..00000000000
--- a/graphics/AtlantisJava/src/atlantis/data/AHistogram.java
+++ /dev/null
@@ -1,422 +0,0 @@
-package atlantis.data;
-
-import atlantis.event.AData;
-import atlantis.graphics.ACoord;
-import atlantis.utils.AHashMap;
-import atlantis.utils.ALogger;
-import atlantis.utils.AVector;
-
-/**
- * Used to create, fill, and draw the calorimeter histograms.
- */
-public class AHistogram extends AData
-{
- private static ALogger logger = ALogger.getLogger(AHistogram.class);
-
- public static final int UP = 0;
- public static final int DOWN = 1;
-
- public static final int HORIZONTAL = 0;
- public static final int VERTICAL = 1;
-
- public final static int RIGHT = 0;
- public final static int LEFT = 1;
-
- private float leftLimit;
- private float rightLimit;
- private float gran;
- private float granSafety;
- private float[] towers;
-
- private double eta0, z, r;
- private double factor;
- private AData detector;
-
-
- AHistogram(double leftLimit, double rightLimit, double gran, double factor, AData detector)
- {
- super(new AHashMap(1).put("numData", 0),detector.getEvent());
-
- this.leftLimit = (float) leftLimit;
- this.rightLimit = (float) rightLimit;
- this.gran = (float) gran;
- this.factor = factor;
- this.detector = detector;
- granSafety = (float) (this.gran * 0.1);
- towers = new float[(int) Math.abs(Math.round((rightLimit - leftLimit) / gran))];
- numData = towers.length;
- }
-
- public float getGranularity()
- {
- return gran;
- }
-
- public int getTowersCount()
- {
- return towers.length;
- }
-
- public float[] getTowers()
- {
- return towers;
- }
-
- public void fill(double v1, double v2, double q)
- {
- int t1 = (int) ((v1 + granSafety - leftLimit) / gran);
- int t2 = (int) ((v2 - granSafety - leftLimit) / gran);
- int i = -999;
-
- if (Math.min(t1, t2) < 0 || Math.max(t1, t2) >= towers.length)
- {
- logger.error("Histogram binning problem " + t1 + " " + t2 + " " + towers.length + " " + v1 + " " + v2);
- return;
- }
-
- if (t1 == t2)
- towers[t1] += q;
- else
- for (i = t1; i <= t2; i++)
- towers[i] += q / (t2 - t1 + 1);
- }
-
- public void setGranularity(double newGran)
- {
- AHistogram newHist = new AHistogram(leftLimit, rightLimit, newGran, factor, detector);
-
- for (int i = 0; i < towers.length; i++)
- newHist.fill(leftLimit + i * gran, leftLimit + (i + 1) * gran, towers[i]);
- gran = (float) newGran;
- towers = newHist.towers;
- }
-
- public void add(AHistogram h)
- {
- float min = Math.min(leftLimit, h.leftLimit);
- float max = Math.max(rightLimit, h.rightLimit);
-
- AHistogram sum = new AHistogram(min, max, gran, factor, detector);
-
- // first I add this histogram
- for (int i = 0; i < towers.length; i++)
- sum.fill(leftLimit + i * gran, leftLimit + (i + 1) * gran, towers[i]);
-
- // and the "h" histogram
- for (int i = 0; i < h.towers.length; i++)
- sum.fill(h.leftLimit + i * h.gran, h.leftLimit + (i + 1) * h.gran, h.towers[i]);
-
- // copy the sum histogram parameters into old ones
- towers = sum.towers;
- leftLimit = min;
- rightLimit = max;
- }
-
- public AHistogram getRegion(double v1, double v2)
- {
- AHistogram hRegion = new AHistogram(v1, v2, gran, factor, detector);
-
- int n1 = (int) Math.round((v1 - leftLimit) / gran);
- int n2 = (int) Math.round((v2 - leftLimit) / gran);
-
- for (int i = n1; i < n2; i++)
- hRegion.fill(v1 + (i - n1) * gran, v1 + (i - n1 + 1) * gran, towers[i]);
-
- return hRegion;
- }
-
- private int getCode()
- {
- int c1, c2;
-
- if (leftLimit < -eta0)
- c1 = 1;
- else if (leftLimit > +eta0)
- c1 = 3;
- else
- c1 = 2;
-
- if (rightLimit < -eta0)
- c2 = 1;
- else if (rightLimit > +eta0)
- c2 = 3;
- else
- c2 = 2;
-
- return c1 * c2;
- }
-
- public ACoord[] getRZUser(double z1, double r1, int upORdown)
- {
- this.z = z1;
- this.r = r1;
- double expEta0, k = z / r;
- int N;
-
- eta0 = Math.abs(Math.log(k + Math.sqrt(k * k + 1)));
-
- switch (getCode())
- {
- case 1:
- return new ACoord[] { getRZVerticalUser(z, upORdown) };
-
- case 4:
- return new ACoord[] { getRZHorizontalUser(r, upORdown) };
-
- case 9:
- return new ACoord[] { getRZVerticalUser(z, upORdown) };
-
- case 2:
- N = (int) Math.abs(Math.round((eta0 - leftLimit) / gran));
- eta0 = leftLimit + N * gran;
- expEta0 = Math.exp(eta0);
- this.r = 2 * this.z / (expEta0 - 1 / expEta0);
-
- return new ACoord[] { getRegion(leftLimit, -eta0).getRZVerticalUser(z, upORdown), getRegion(-eta0, rightLimit).getRZHorizontalUser(r, upORdown) };
-
- case 6:
- N = (int) Math.abs(Math.round((eta0 - leftLimit) / gran));
- eta0 = leftLimit + N * gran;
- expEta0 = Math.exp(eta0);
- this.r = 2 * this.z / (expEta0 - 1 / expEta0);
-
- return new ACoord[] { getRegion(leftLimit, +eta0).getRZHorizontalUser(r, upORdown), getRegion(+eta0, rightLimit).getRZVerticalUser(z, upORdown) };
-
- case 3:
- // FIXME -- round() replaced by floor() here to make sure
- // histograms do not end up inside the calorimeter outline.
- // They should be right at the edge regardless of the binning
- // though. This should be changed. -- EJ
- N = (int) Math.abs(Math.floor((eta0 - leftLimit) / gran));
- eta0 = leftLimit + N * gran;
- expEta0 = Math.exp(eta0);
- this.r = 2 * this.z / (expEta0 - 1 / expEta0);
-
- return new ACoord[] { getRegion(leftLimit, -eta0).getRZVerticalUser(z, upORdown), getRegion(-eta0, +eta0).getRZHorizontalUser(r, upORdown), getRegion(+eta0, rightLimit).getRZVerticalUser(z, upORdown) };
-
- default:
- return null;
- }
- }
-
- public ACoord getRZHorizontalUser(double r, int place)
- {
- double[][][] hv = new double[2][towers.length][4];
- int[] index = new int[towers.length];
- double eta, exp1, exp2, zSign, rSign;
-
- for (int i = 0; i < towers.length; i++)
- {
- exp1 = Math.exp(leftLimit + i * gran);
- exp2 = Math.exp(leftLimit + (i + 1) * gran);
- rSign = (int) Math.pow(-1, place);
-
- eta = leftLimit + (i + 0.5) * gran;
- if (eta != 0)
- zSign = eta / Math.abs(eta);
- else
- zSign = 1;
-
- hv[0][i][0] = zSign * Math.abs(r * (exp1 - 1 / exp1) / 2);
- hv[1][i][0] = rSign * r;
-
- hv[0][i][1] = zSign * Math.abs(r * (exp2 - 1 / exp2) / 2);
- hv[1][i][1] = rSign * r;
-
- hv[0][i][2] = 0;
- hv[1][i][2] = 0;
-
- index[i] = i;
- }
-
- ACoord c = new ACoord(hv, index);
-
- c.source = this;
- return c;
- }
-
- public ACoord getRZVerticalUser(double z, int place)
- {
- double[][][] hv = new double[2][towers.length][4];
- int[] index = new int[towers.length];
- double exp1, exp2, zSign, rSign;
-
- for (int i = 0; i < towers.length; i++)
- {
- exp1 = Math.exp(leftLimit + i * gran);
- exp2 = Math.exp(leftLimit + (i + 1) * gran);
- rSign = (int) Math.pow(-1, place);
-
- if ((leftLimit > 0) && (rightLimit > 0))
- zSign = +1;
- else
- zSign = -1;
-
- hv[0][i][0] = zSign * z;
- hv[1][i][0] = rSign * Math.abs(2 * z / (exp2 - 1 / exp2));
-
- hv[0][i][1] = zSign * z;
- hv[1][i][1] = rSign * Math.abs(2 * z / (exp1 - 1 / exp1));
-
- hv[0][i][2] = 0;
- hv[1][i][2] = 0;
-
- index[i] = i;
- }
-
- ACoord c = new ACoord(hv, index);
-
- c.source = this;
- return c;
- }
-
- protected ACoord getYXUser(double r)
- {
- int n = towers.length;
- double[][][] hv = new double[2][n][4];
- int[] index = new int[n];
-
- for (int i = 0; i < n; i++)
- {
- double phi1 = leftLimit + i * gran;
- double phi2 = leftLimit + (i + 1) * gran;
-
- // first point
- hv[0][i][0] = r * Math.cos(phi1);
- hv[1][i][0] = r * Math.sin(phi1);
-
- // second point
- hv[1][i][1] = r * Math.sin(phi2);
- hv[0][i][1] = r * Math.cos(phi2);
-
- // third point (the center)
- hv[0][i][2] = 0;
- hv[1][i][2] = 0;
-
- index[i] = i;
- }
-
- ACoord c = new ACoord(hv, index);
-
- c.source = this;
- return c;
- }
-
- public ACoord completeTowers(ACoord c)
- {
- AVector u = new AVector(0, 0);
-
- for (int i = 0; i < c.hv[0].length; i++)
- {
- double x0 = (c.hv[0][i][0] + c.hv[0][i][1]) / 2;
- double y0 = (c.hv[1][i][0] + c.hv[1][i][1]) / 2;
- double f = factor * towers[c.index[i]];
-
- u.set(x0 - c.hv[0][i][2], y0 - c.hv[1][i][2]).makeUnitary().scale(f);
-
- c.hv[0][i][2] = c.hv[0][i][1] + u.dx;
- c.hv[1][i][2] = c.hv[1][i][1] + u.dy;
-
- c.hv[0][i][3] = c.hv[0][i][0] + u.dx;
- c.hv[1][i][3] = c.hv[1][i][0] + u.dy;
- }
-
- return c;
- }
-
- protected ACoord getFRUser(double r)
- {
- int n = towers.length;
- double[][][] hv = new double[2][n][4];
- int[] index = new int[n];
-
- for (int i = 0; i < n; i++)
- {
- hv[0][i][0] = r;
- hv[1][i][0] = Math.toDegrees(leftLimit + i * gran);
-
- hv[0][i][1] = r;
- hv[1][i][1] = Math.toDegrees(leftLimit + (i + 1) * gran);
-
- hv[0][i][2] = 0;
- hv[1][i][2] = Math.toDegrees(leftLimit + (i + 0.5) * gran);
-
- index[i] = i;
- }
-
- ACoord c = new ACoord(hv, index);
-
- c.source = this;
- return c;
- }
-
- protected ACoord getFZUser(double z, int alignment)
- {
- int n = towers.length;
- double[][][] hv = new double[2][n][4];
- int[] index = new int[n];
-
- double zSign = Math.pow(-1, alignment);
-
- for (int i = 0; i < n; i++)
- {
- hv[0][i][0] = zSign * z;
- hv[1][i][0] = Math.toDegrees(leftLimit + i * gran);
-
- hv[0][i][1] = zSign * z;
- hv[1][i][1] = Math.toDegrees(leftLimit + (i + 1) * gran);
-
- hv[0][i][2] = 0;
- hv[1][i][2] = Math.toDegrees(leftLimit + (i + 0.5) * gran);
-
- index[i] = i;
- }
-
- ACoord c = new ACoord(hv, index);
-
- c.source = this;
- return c;
- }
-
- // implementation of AData
- public String getParameterGroup()
- {
- return null;
- }
-
- public String getName()
- {
- return null;
- }
-
- public String getNameScreenName()
- {
- return detector.getParameterGroup() + " Histogram Tower";
- }
-
- protected int internalColor()
- {
- return 0;
- }
-
- protected void applyCuts()
- {}
-
- public String getHitInfo(int index)
- {
- StringBuffer msg = new StringBuffer(getNameScreenName());
- msg.append(" (index: " + index + ")");
- msg.append("\n ET = ");
- msg.append(String.format("%.2f",towers[index]));
- msg.append(" GeV");
-
- return msg.toString();
- }
-
- public int getIdFromIndex(int index)
- {
- // Histograms have only an internal ID, override this method here to avoid problems
- return index;
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/data/AHistogramData.java b/graphics/AtlantisJava/src/atlantis/data/AHistogramData.java
deleted file mode 100644
index c216d458266..00000000000
--- a/graphics/AtlantisJava/src/atlantis/data/AHistogramData.java
+++ /dev/null
@@ -1,15 +0,0 @@
-package atlantis.data;
-
-
-import atlantis.graphics.ACoord;
-
-
-public interface AHistogramData {
- ACoord[] getYXHistograms();
- ACoord[] getRZHistograms();
- ACoord[] getFRHistograms();
- ACoord[] getFZHistograms();
- ACoord[] getXZHistograms();
- ACoord[] getYZHistograms();
- ACoord[] getVPHistograms();
-}
diff --git a/graphics/AtlantisJava/src/atlantis/data/AHitData.java b/graphics/AtlantisJava/src/atlantis/data/AHitData.java
deleted file mode 100644
index b27c824660a..00000000000
--- a/graphics/AtlantisJava/src/atlantis/data/AHitData.java
+++ /dev/null
@@ -1,487 +0,0 @@
-package atlantis.data;
-
-import atlantis.event.*;
-import atlantis.graphics.colormap.AColorMap;
-import atlantis.list.AListManager;
-import atlantis.parameters.AEnumeratorParameter;
-import atlantis.utils.AHashMap;
-import java.util.Vector;
-import atlantis.utils.ALogger;
-
-public abstract class AHitData extends AData
-{
- private static ALogger logger = ALogger.getLogger(AHitData.class);
-
- protected byte[] type;
- // sub should be removed at some point
- protected int[] sub;
- // linked list
- protected int[] ll;
- protected int[] llStart;
- protected int[] llNum;
-
- // for "new Truth" (2006-08-08) implementation of barcode management
- // (association to truth tracks)
- protected int[] barcode = null; // old style barcode
- protected int[] barcodes = null; // new style barcodes
- protected int[] numBarcodes = null; // new style numBarcodes
-
- @Override
- public final int getNumTypes(){
- return 2;
- }
-
- private static final int NOISE = 0;
- private static final int GOOD = 1;
-
-
-
- AHitData(AHashMap p, AEvent e)
- {
- super(p,e);
-
- sub = p.getUnknownIntArray("sub");
- type = new byte[numData];
- ll = new int[numData];
- llStart = new int[getNumTypes()];
- llNum = new int[getNumTypes()];
-
- AAssociation assoc = null;
- if (p.get("barcode") != null)
- {
- // old style truth (1-to-1 barcode association)
- barcode = p.getUnknownIntArray("barcode");
-
- assoc = new AAssociation(getFullName(), "STr", null, barcode, event);
- event.getAssociationManager().add(assoc);
- }
- else if(p.get("barcodes") != null && p.get("numBarcodes") != null)
- {
- // new style truth (1-to-n barcodes, numBarcodes association)
- barcodes = p.getUnknownIntArray("barcodes");
- numBarcodes = p.getUnknownIntArray("numBarcodes");
-
- // getFullName() should return hit datatype name + storegate key
- assoc = new AAssociation(getFullName(), "STr", numBarcodes, barcodes,event);
- event.getAssociationManager().add(assoc);
- }
-
- } // AHitData() ---------------------------------------------------------
-
-
-
- public String getHitInfo(int index)
- {
- StringBuilder r = new StringBuilder();
- if(this.barcode != null)
- {
- // old style truth association - 1 barcode associated with a hit
- r.append("\n barcode = " + barcode[index]);
- }
- else if(this.barcodes != null && this.numBarcodes != null)
- {
- // new style truth association - N barcodes associated with a hit
-
- int[][] barcodes = event.getAssociationManager().get(getFullName(), "STr");
- if(barcodes[index] != null)
- {
- r.append("\n barcode(s) = ");
- for(int i = 0; i < barcodes[index].length; i++)
- {
- r.append(barcodes[index][i] + " ");
- }
- }
- else
- {
- r.append("\n no STr associated");
- }
- }
-
- return r.toString();
-
- } // getHitInfo() -------------------------------------------------------
-
-
-
- /**
- * Calculates actual association via - SiCluster for the datatype
- * (SpacePoint (S3D) and TrigSpacePoint) to InDetTrack* (inner detector
- * reconstructed track collection)
- * @param to String
- * @param via String
- * @return int[][]
- */
- private int[][] calculateAssociation(String to, String via)
- {
- String infoMsg = " association from: " + this.getName() + " to: " +
- to + " via: " + via;
-
- logger.debug("AData.calculateAssociation()\n" + infoMsg);
-
- int[][] clusters = event.getAssociationManager().get(getFullName(), via);
- int[][] recon = event.getAssociationManager().get(via, to);
- AData source = event.get(via);
- if(clusters == null || recon == null || source == null)
- {
- return null;
- }
-
- int[][] ass = new int[numData][];
-
- // iterate over all data items of this datatype
- for(int i = 0; i < numData; ++i)
- {
- if(clusters[i] != null && clusters[i].length == 2)
- {
- // this is a SCT hit which has two clusters
- int index1 = source.getIndexFromId(clusters[i][0]);
- int index2 = source.getIndexFromId(clusters[i][1]);
- if(index1 != -1 && index2 != -1 &&
- recon[index1] != null && recon[index2] != null)
- {
- int[] temp = new int[recon[index1].length];
- int matches = 0;
- for(int k = 0; k < recon[index1].length; ++k)
- {
- for(int j = 0; j < recon[index2].length; ++j)
- {
- if(recon[index1][k] == recon[index2][j])
- {
- // IndexOutOfBound protection
- if(matches < recon[index1].length)
- {
- temp[matches] = recon[index1][k];
- matches++;
- }
- else
- {
- logger.warn("Association problem:\n" + infoMsg);
- }
- }
- }
- }
- if(matches == 0)
- {
- ass[i] = null;
- }
- else if(matches == temp.length)
- {
- ass[i] = temp;
- }
- else
- {
- int[] dest = new int[matches];
- System.arraycopy(temp, 0, dest, 0, matches);
- ass[i] = dest;
- }
- }
- }
- else if(clusters[i] != null && clusters[i].length == 1)
- {
- // this is pixel hit which has one cluster only (second number was
- // -1 and was ignored in the datatypes (S3D, TrigS3D) constuctor
-
- // although this method calculates association via SiCluster
- // there are no SiClusters for Pixel and this is a Pixel hit
- // -> need to calculate the SpacePoint - Track association directly
- // based on Track:hits (which has got id of non-existing SiCluster
- // hits) and SpacePoint:cluster which also has Pixel cluster
- // references (more see email on 2007-09-20 association problems ...)
- // can't use above block as source (SiCluster) doesn't exists, there
- // are no SiCluster in Pixel, thus source.getIndexFromId(clusters[i][0])
- // can't work ...
-
- // AAssociationManager.get(via, to); would return recalculated
- // inverted association containing indices.
-
- // this returns the direct array saved in InDetTrackData() constructor
- // AAssociationManager.add(new AAssociation(assocKey, "SiCluster", numHits, hits));
- int[][] directRecon = event.getAssociationManager().getAssociation(to, via).getData();
-
- for(int x = 0; x < directRecon.length; x++)
- {
- if(directRecon[x] != null)
- {
- for(int y = 0; y < directRecon[x].length; y++)
- {
- // if the SpacePoint cluster ID is the same as id in
- // Track:hits, then it's an associated hit
- if(clusters[i][0] == directRecon[x][y])
- {
- if(ass[i] == null)
- {
- // current association, x is associated track index
- ass[i] = new int[] { x };
- }
- else
- {
- // some tracks before were already associated
- // copy the array and add current track index
- int[] temp = new int[ass[i].length + 1];
- System.arraycopy(ass[i], 0, temp, 0, ass[i].length);
- temp[ass[i].length] = x; // current association
- ass[i] = new int[temp.length];
- System.arraycopy(temp, 0, ass[i], 0, temp.length);
- }
-
- }
- } // for(int y = 0; y < directRecon[x].length; y++)
- }
- } // loop over x (x is all track indices)
- } // else - pixel cluster found
-
- } // for(int i = 0; i < numData; ++i) - loop over all current datatype items
-
- return ass;
-
- } // calculateAssociation() ---------------------------------------------
-
-
-
- /*
- * This method uses clusters array (association with SiCluster) which
- * is accessed in calculateAssociation() and creates
- * TrigS3D - Track association and S3D - Track association (via SiCluster)
- */
- protected void calculateAssociationViaClusters()
- {
- Vector<String> keys = event.getCollections().get("InDetTrack");
- int[][] recon = null;
- int[][] recon2 = null;
- AAssociation assoc = null;
- String[] trackCollec = null;
-
- if(keys != null)
- {
- trackCollec = (String[]) keys.toArray(new String[keys.size()]);
- for(int j = 0; j < trackCollec.length; j++)
- {
- String trackCollecFull = "InDetTrack" + trackCollec[j];
- recon = event.getAssociationManager().get(getFullName(), trackCollecFull);
- recon2 = calculateAssociation(trackCollecFull, "SiCluster");
- if(recon != null && recon2 != null)
- {
- for(int i = 0; i< numData; i++)
- {
- if(recon2[i] != null)
- {
- // using array reference here - association array is corrected
- recon[i] = recon2[i];
- }
- }
- assoc = event.getAssociationManager().getAssociation(getName(), trackCollecFull);
- event.getAssociationManager().add(assoc.invert());
- }
- }
- }
-
- } // calculateAssociationViaClusters() ---------------------------------
-
-
-
- protected int internalColor()
- {
- int colorFunction = parameterStore.get(PARAMETER_GROUP, "ColorFunction").getI();
-
- if (colorFunction == 0)
- {
- colorByConstant();
- }
- else if (colorFunction == 1)
- {
- colorBy("STr");
- }
- else if (colorFunction == 2)
- {
- colorBy(getReconstructedTracks());
- }
- else if (colorFunction == 3)
- {
- colorBy(sub);
- }
-
- return 3;
-
- } // internalColor() ----------------------------------------------------
-
-
-
- protected String getSegments()
- {
- AEnumeratorParameter key = (AEnumeratorParameter) parameterStore.get("InDetSegment", "InDetSegmentCollections");
-
- return "InDetSegment" + key.getCurrentText();
- }
-
-
-
- public void constructDefaultDrawlist()
- {
- // make seperate lists of noise and good hits
- makeNoiseList(0, 0);
-
- if (!parameterStore.get("CutsATLAS", "ByList").getStatus())
- {
- // put noise and/or good hits in drawlist according to HitType
- // parameter
- // if both are drawn noise is drawn first
- makeDrawList(parameterStore.get("CutsInDet", "HitType").getI());
-
- // if some hits are on a list they must be drawn last
- int[][] temp = AListManager.getInstance().getColorMapping(this);
- int[] index = temp[0];
- int[] ctemp = temp[1];
- if (index.length > 0)
- {
- int[] c = new int[numData];
- final int NONE = -999;
- // color is not used at this time
- for (int i = 0; i < c.length; ++i)
- c[i] = NONE;
-
- for (int i = 0; i < index.length; ++i)
- c[index[i]] = ctemp[i];
-
- int[] newListdl = new int[numData];
- int num = 0;
- for (int t = 0; t < getNumTypes(); t++)
- {
- for (int i = 0; i < numDraw; ++i)
- if (t == type[listdl[i]] && c[listdl[i]] == NONE)
- newListdl[num++] = listdl[i];
- for (int i = 0; i < numDraw; ++i)
- if (t == type[listdl[i]] && c[listdl[i]] != NONE && c[listdl[i]] != AColorMap.INVISIBLE)
- newListdl[num++] = listdl[i];
- }
- listdl = newListdl;
- numDraw = num;
- }
- }
- else
- {
- boolean[] selected = AListManager.getInstance().getSelection(this);
- numDraw = 0;
- for (int t = 0; t < getNumTypes(); t++)
- for (int i = 0; i < numData; ++i)
- if (t == type[i] && selected[i])
- listdl[numDraw++] = i;
- }
- }
-
-
- /**
- * define noise and good hits type = 0 means noise
- * noise hits - hits associated neither with Track not STr
- * good hits - hits associated either with Track or with STr
- */
- protected void setType()
- {
- int[][] assocSTr = event.getAssociationManager().get(getFullName(), "STr");
- int[][] assocRTr = event.getAssociationManager().get(getName(), getReconstructedTracks());
-
- for (int i = 0; i < numData; i++)
- {
- if((assocSTr != null && assocSTr[i] != null) ||
- (assocRTr != null && assocRTr[i] != null))
- {
- type[i] = 1;
- }
- else
- {
- type[i] = 0;
- }
- }
-
- } // setType() ----------------------------------------------------------
-
-
-
- protected void makeNoiseList(int a, int b)
- {
- setType();
-
- for (int i = 0; i < getNumTypes(); i++)
- {
- llStart[i] = -1;
- llNum[i] = 0;
- }
-
- for (int i = numData - 1; i >= 0; i--)
- {
- ll[i] = llStart[type[i]];
- llStart[type[i]] = i;
- llNum[type[i]]++;
- }
- }
-
- private void makeDrawList(int hitType)
- {
- int start, end;
-
- numDraw = 0;
- if (hitType == 0)
- {
- start = end = NOISE;
- }
- else if (hitType == 1)
- {
- start = end = GOOD;
- }
- else
- {
- start = NOISE;
- end = GOOD;
- }
-
- for (int i = start; i <= end; i++)
- {
- int n = llStart[i];
-
- for (int j = 0; j < llNum[i]; j++)
- {
- listdl[numDraw++] = n;
- n = ll[n];
- }
- }
- }
-
-
-
- public int[] getType(int[] dl)
- {
- int[] temp = new int[dl.length];
-
- for (int i = 0; i < temp.length; i++)
- temp[i] = type[dl[i]];
- return temp;
- }
-
-
-
- /**
- * cut hits if connected/unconnected to simulated tracks
- */
- protected void cutSimulatedTracks()
- {
- int cutOption = parameterStore.get("CutsInDet", "HitsBySTr").getI();
- cutByAssociationTo("STr", getFullName(), cutOption);
- }
-
- /**
- * cut hits if connected/unconnected to reconstructed tracks
- */
- protected void cutReconstructedTracks()
- {
- int cutOption = parameterStore.get("CutsInDet", "HitsByRTr").getI();
- cutByAssociationTo(getReconstructedTracks(), getName(), cutOption);
- }
-
- /**
- * cut hits if connected/unconnected to reconstructed segments
- */
- protected void cutSegments()
- {
- int cutOption = parameterStore.get("CutsInDet", "HitsBySegment").getI();
- cutByAssociationTo(getSegments(), getName(), cutOption);
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/data/AInDetSegmentData.java b/graphics/AtlantisJava/src/atlantis/data/AInDetSegmentData.java
deleted file mode 100755
index e7d97508d64..00000000000
--- a/graphics/AtlantisJava/src/atlantis/data/AInDetSegmentData.java
+++ /dev/null
@@ -1,30 +0,0 @@
-package atlantis.data;
-
-import atlantis.event.*;
-import atlantis.utils.AHashMap;
-
-/**
- *
- * @author Eric Jansen
- */
-public class AInDetSegmentData extends ASegmentData {
-
- /** Creates a new instance of AInDetSegmentData */
- AInDetSegmentData(AHashMap p, AEvent e) {
- super(p,e);
-
- event.getAssociationManager().add(new AAssociation(getFullName(), "TRT", numHits, hits,event));
- }
-
- public String getParameterGroup() {
- return "InDetSegment";
- }
-
- public String getName() {
- return "InDetSegment";
- }
-
- public String getNameScreenName() {
- return "InDetSegment";
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/data/AInDetTrackData.java b/graphics/AtlantisJava/src/atlantis/data/AInDetTrackData.java
deleted file mode 100644
index 05e5bda343d..00000000000
--- a/graphics/AtlantisJava/src/atlantis/data/AInDetTrackData.java
+++ /dev/null
@@ -1,164 +0,0 @@
-package atlantis.data;
-
-import atlantis.event.AAssociation;
-import atlantis.event.AEvent;
-import atlantis.event.AData;
-import atlantis.globals.AGlobals;
-import atlantis.utils.AHashMap;
-import atlantis.utils.AAtlantisException;
-import atlantis.utils.AIdHelper;
-import atlantis.utils.ALogger;
-
-/**
- *
- * @author Eric Jansen
- */
-
-public class AInDetTrackData extends ATrackData {
-
- private int[] author = null;
-
- protected int numBLayerHits[] = null;
- protected int numPixelHits[] = null;
- protected int numSCTHits[] = null;
- protected int numTRTHits[] = null;
-
- private static ALogger logger = ALogger.getLogger(ATrackData.class);
-
- /** Creates a new instance of AInDetTrackData */
- AInDetTrackData(AHashMap p, AEvent e) throws AAtlantisException {
- super(p,e);
-
- author = p.getUnsureIntArray("trackAuthor"); //Change added 17/02/2010
-
- numBLayerHits = p.getUnsureIntArray("nBLayerHits");
- numPixelHits = p.getUnsureIntArray("nPixHits");
- numSCTHits = p.getUnsureIntArray("nSCTHits");
- numTRTHits = p.getUnsureIntArray("nTRTHits");
-
- String assocKey = getFullName();
- if (p.get("numHits") != null) {
- int[] numHits = p.getIntArray("numHits");
- int[] hits = p.getIntArray("hits");
-
- // This was added into TrkJiveXML-00-01-24, July 2010. For backwards
- // compatibilty, we can also fill these arrays from the association
- if (numPixelHits == null && numSCTHits == null && numTRTHits == null) {
- numPixelHits = new int[numData];
- numSCTHits = new int[numData];
- numTRTHits = new int[numData];
- for (int i=0, num=0; i<numData; i++) {
- numPixelHits[i] = numSCTHits[i] = numTRTHits[i] = 0;
-
- for (int j=0; j<numHits[i]; j++, num++) {
- try {
- // Negative identifiers are pixels, the rest we can decode using AIdHelper
- if (numHits[i] > 0 && (hits[num] < 0 || AIdHelper.subDetector(hits[num]) == 2)) {
- switch(hits[num] < 0 ? 1 : AIdHelper.indetPart(hits[num])) {
- case 1:
- numPixelHits[i]++;
- break;
- case 2:
- numSCTHits[i]++;
- break;
- case 3:
- numTRTHits[i]++;
- break;
- }
- }
- } catch (AAtlantisException ex) {
- logger.warn("Problem decoding hit identifier: " + ex.getMessage());
- }
- }
- }
- }
-
- int[] driftSign = null;
- int[] isOutlier = null;
- if (p.get("driftSign") != null && p.get("isOutlier") != null) {
- driftSign = p.getIntArray("driftSign");
- isOutlier = p.getIntArray("isOutlier");
- }
-
- event.getAssociationManager().add(new AAssociation(assocKey, "TRT", numHits, hits,event));
- if (driftSign != null) {
- event.getAssociationManager().add(new AAssociation(assocKey + "Drift", "TRT", numHits, driftSign,event));
- }
- if (isOutlier != null) {
- event.getAssociationManager().add(new AAssociation(assocKey + "Outlier", "TRT", numHits, isOutlier,event));
- }
- event.getAssociationManager().add(new AAssociation(assocKey, "SiCluster", numHits, hits,event));
- event.getAssociationManager().add(new AAssociation(assocKey, "PixelCluster", numHits, hits,event));
-
-
- // although these two following associations directly doesn't exist
- // in the event file (e.g. Track:numHits,hits - S3D:id) because it
- // is calculated over SiCluster, the association has to be
- // established here and corrected later on in
- // AS3D.finalizeConstruction() -> AHitData.calculateAssociationViaClusters()
- event.getAssociationManager().add(new AAssociation(assocKey, "S3D", numHits, hits,event));
- event.getAssociationManager().add(new AAssociation(assocKey, "TrigS3D", numHits, hits,event));
- }
- }
-
- public String getParameterGroup() {
- return "InDetTrack";
- }
-
- public String getName() {
- return "InDetTrack";
- }
-
- public String getNameScreenName() {
- return "InDetTrack";
- }
-
- public String getHitInfo(int index) {
- String msg = super.getHitInfo(index);
- int simpleOutput = AGlobals.instance().getSimpleOutput();
- if(simpleOutput>0)
- return getNameScreenName()+" index: " + index + ((h!=null)?h[index].toString():""); // output for Minerva
- if (numBLayerHits != null) {
- msg += "\n numBLayerHits = " + numBLayerHits[index];
- }
- if (numPixelHits != null) {
- msg += "\n numPixelHits = " + numPixelHits[index];
- }
- if (numSCTHits != null) {
- msg += "\n numSCTHits = " + numSCTHits[index];
- }
- if (numTRTHits != null) {
- msg += "\n numTRTHits = " + numTRTHits[index];
- }
- return msg;
- }
-
- protected void applyCuts() {
- cut("CutsInDet", "RTrIndex", " RTr id", id);
- cut("CutsInDet", "trackAuthor", " Author", author);
-
- if (numBLayerHits != null) {
- cut("CutsInDet", "NumBLayer", "Num BLayer", numBLayerHits);
- }
- if (numPixelHits != null) {
- cut("CutsInDet", "NumPixel", "Num Pixel", numPixelHits);
- }
- if (numSCTHits != null) {
- cut("CutsInDet", "NumSCT", "Num SCT", numSCTHits);
- }
- if (numTRTHits != null) {
- cut("CutsInDet", "NumTRT", "Num TRT", numTRTHits);
- }
-
- super.applyCuts();
-
- if (polylinedTrack && parameterStore.get(PARAMETER_GROUP, "DrawnAs").getI() == DRAW_HELIX) {
- // if reconstructed tracks are drawn as helices, check for tracks
- // with rhoVertex beyond the diameter of InDet and don't draw those
- // super.rhoVertex array was calculated only if Track provided
- // polyline data, otherwise rhoVertex is null and this method would
- // cause NullPointerException
- super.cutRhoVertexAfterInDetRadius();
- }
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/data/AJetData.java b/graphics/AtlantisJava/src/atlantis/data/AJetData.java
deleted file mode 100644
index d2e1743a92b..00000000000
--- a/graphics/AtlantisJava/src/atlantis/data/AJetData.java
+++ /dev/null
@@ -1,782 +0,0 @@
-package atlantis.data;
-
-import java.util.ArrayList;
-import java.util.List;
-
-import atlantis.event.AAssociation;
-import atlantis.event.AData;
-import atlantis.event.AEvent;
-import atlantis.event.AObjectsAssociation;
-import atlantis.globals.AGlobals;
-import atlantis.graphics.ACoord;
-import atlantis.parameters.APar;
-import atlantis.utils.AMath;
-import atlantis.utils.A3Vector;
-import atlantis.utils.A4Vector;
-import atlantis.utils.AHashMap;
-import atlantis.canvas.AWindow;
-import atlantis.projection.AProjection2D;
-import atlantis.projection.AProjectionVP;
-import atlantis.graphics.AGraphics;
-
-/**
- * Jet class - class handling multiple Jet datatypes
- * (multiple collections) from various Jet alrogithms
- * (JetRecJet, ParticleJet, etc)
- */
-public class AJetData extends AData
-{
- protected float[] eT;
- protected float[] eta;
- protected float[] phi;
- protected float[] mass;
- protected float[] pT;
- protected float[] px;
- protected float[] py;
- protected float[] pz;
- //Transition variable to ensure backwards compatability
- protected boolean has4Vect = false;
- //variables for jet quality information
- protected float[] quality = null;
- protected float[] qualityLAr = null;
- protected float[] qualityTile = null;
- protected float[] time = null;
- protected float[] timeClusters = null;
- protected int[] n90cells = null;
- protected int[] n90const = null;
- protected float[] hecf = null;
- protected float[] emfrac = null;
- protected float[] tileGap3f = null;
- protected float[] fcorCell = null;
- protected float[] fcorDotx = null;
- protected float[] fcorJet = null;
- protected float[] fcorJetForCell = null;
- protected int[] nbadcells = null;
- protected float[] fracSamplingMax = null;
- protected float[] sMax = null;
- protected float[] OutOfTimeEfrac = null;
- protected float[] isGood = null;
- protected float[] isBad = null;
- protected float[] isUgly = null;
- protected String[] bTagName = null; //new bTagname variable
- protected float[] bTagValue = null; //new bTagValue variable
- protected float[] weight = null;
- protected float[] jvf = null;
- //Transition variable to ensure backwards compatability
- protected boolean hasJvf = true;
-
- String[] caloSample = { "EMB0", "EMB1", "EMB2", "EMB3", "EME0", "EME1", "EME2", "EME3", "HEC0", "HEC1", "HEC2", "HEC3", "TileBar0", "TileBar1", "TileBar2", "TileGap1", "TileGap2", "TileGap3", "TileExt0", "TileExt1", "TileExt2", "FCAL0", "FCAL1", "FCAL2", "Unknown" };
-
-
- AJetData(AHashMap p, AEvent e)
- {
- super(p,e);
- if (p.get("et") != null)
- {
- eT = p.getFloatArray("et");
- }
- else
- {
- eT = p.getFloatArray("pt");
- }
-
-
- if(p.get("mass") != null)
- {
- mass = p.getFloatArray("mass");
- px = p.getFloatArray("px");
- py = p.getFloatArray("py");
- pz = p.getFloatArray("pz");
- has4Vect = true;
- }
- eta = p.getFloatArray("eta");
- phi = p.getFloatArray("phi");
-
- if(p.get("emfrac") != null)
- {
- emfrac = p.getFloatArray("emfrac");
- }
-
- float forwardJVF = 10.0f;
- float initJVF = 1.0f;
- if(p.get("jvf") != null)
- {
- jvf = p.getFloatArray("jvf");
- for(int i=0; i<(jvf.length); i++)
- {
- if( jvf[i] == -1.0 )
- jvf[i] = forwardJVF; // forward-jets have jvf=-1
- }
- }
- else // dummy values for older xml-files
- {
- hasJvf = false;
- jvf = new float[eta.length]; // for array size
- for(int i=0; i<(jvf.length); i++)
- {
- jvf[i] = initJVF; // need to assign dummy value to allow cut
- }
- }
-
- //Getting BTagNames and BTagValues from xml
- if(p.get("bTagValue") != null)
- {
- bTagValue = p.getFloatArray("bTagValue");
- bTagName = p.getUnsureStringArray("bTagName");
- weight = new float[eta.length];
- for(int i=0; i<(eta.length); i++)
- weight[i] = bTagValue[i*(bTagValue.length/eta.length) + 0];
- // 0 is the first instance of JetFitterNNComb
- // we take this as default for now...
- }
-
- if(has4Vect)
- {
- float[] pTtemp = new float[mass.length];
- for(int i = 0; i < mass.length; i++){
- pTtemp[i] = (float) (new A4Vector(px[i],py[i],pz[i],mass[i]) ).getPt();
- }
- pT = pTtemp;
- }
-
- if(p.get("quality") != null)
- quality = p.getFloatArray("quality");
- if(p.get("qualityLAr") != null){
- qualityLAr = p.getFloatArray("qualityLAr");
- qualityTile = p.getFloatArray("qualityTile");
- time = p.getFloatArray("time");
- timeClusters = p.getFloatArray("timeClusters");
- n90cells = p.getIntArray("n90cells");
- n90const = p.getIntArray("n90const");
- hecf = p.getFloatArray("hecf");
- tileGap3f = p.getFloatArray("tileGap3f");
- fcorCell = p.getFloatArray("fcorCell");
- fcorDotx = p.getFloatArray("fcorDotx");
- fcorJet = p.getFloatArray("fcorJet");
- fcorJetForCell = p.getFloatArray("fcorJetForCell");
- nbadcells = p.getIntArray("nbadcells");
- fracSamplingMax = p.getFloatArray("fracSamplingMax");
- sMax = p.getFloatArray("sMax");
- OutOfTimeEfrac = p.getFloatArray("OutOfTimeEfrac");
- isGood = p.getFloatArray("isGood");
- isBad = p.getFloatArray("isBad");
- isUgly = p.getFloatArray("isUgly");
- }
-
- String assocKey = getFullName();
- // create Jet - Calo associations if cells information is available
- if(p.get("numCells") != null)
- {
- event.getAssociationManager().add(new AAssociation(assocKey, "LAr", p.getIntArray("numCells"), p.getIntArray("cells"),event));
- event.getAssociationManager().add(new AAssociation(assocKey, "TILE", p.getIntArray("numCells"), p.getIntArray("cells"),event));
- event.getAssociationManager().add(new AAssociation(assocKey, "HEC", p.getIntArray("numCells"), p.getIntArray("cells"),event));
- event.getAssociationManager().add(new AAssociation(assocKey, "FCAL", p.getIntArray("numCells"), p.getIntArray("cells"),event));
- }
-
- if (p.get("clusterKey") != null)
- {
- int[] clusterLinkCount = p.getUnsureIntArray("clusterLinkCount");
- event.getAssociationManager().add(new AObjectsAssociation(assocKey, "Cluster",
- p.getStringArray("clusterKey"), p.getIntArray("clusterIndex"), clusterLinkCount, event));
- }
- if (p.get("trackKey") != null)
- {
- int[] trackLinkCount = p.getUnsureIntArray("trackLinkCount");
- event.getAssociationManager().add(new AObjectsAssociation(assocKey, "Track",
- p.getStringArray("trackKey"), p.getIntArray("trackIndex"), trackLinkCount, event));
- }
- }
-
-
- public String getParameterGroup()
- {
- return "Jet";
- }
-
-
- public String getName()
- {
- return "Jet";
- }
-
-
- public String getNameScreenName()
- {
- return "Jet";
- }
-
-
- public float getET(int index)
- {
- return eT[index];
- }
-
-
- public float getEta(int index)
- {
- return eta[index];
- }
-
-
- public float getPhi(int index)
- {
- return phi[index];
- }
-
-
- public float[] getET()
- {
- return eT;
- }
-
-
- public float[] getEta()
- {
- return eta;
- }
-
-
- public float[] getPhi()
- {
- return phi;
- }
-
- public float[] getPt()
- {
- if(has4Vect){
- return pT;
- }else{
- return eT;
- }
- }
-
- @SuppressWarnings("unused")
- // TODO: these cuts are from Nikolina
- // using the wrong indices?
- private float[] getfCorJetLevel()
- {
- // Tom - problem here with inconsistent indices?
- // this code is not used yet, but the Jet people want it eventually
- // i is the total data index, but we need to get that from the draw list, listdl[i].
- float[] temp = new float[numDraw];
- for (int i = 0; i < numDraw; i++)
- temp[i] = (float) (fcorCell[i] - fcorJet[i]);
- return temp;
- }
-
- @SuppressWarnings("unused")
- // TODO: these cuts are from Nikolina
- // using the wrong indices?
- private float[] getHECfQ()
- {
- float[] temp = new float[numDraw];
- for (int i = 0; i < numDraw; i++)
- temp[i] = (float) (Math.abs(hecf[i]) + Math.abs(quality[i]));
- return temp;
- }
-
- /*
- * Return an ordered list of the btaggers available in the event.
- * If using an older XML file without btaggers available, an empty list is returned.
- * Ordering is important to be consistent with the BTag Weights, which are ordered the same.
- */
- public List<String> getBTaggers() {
-
- List<String> taggers = new ArrayList<String>();
-
- if(bTagName == null)
- return taggers;
-
- for(String tagger : bTagName) {
- if(!taggers.contains(tagger)) {
- taggers.add(tagger);
- }
- }
-
- return taggers;
- }
-
- protected void applyCuts()
- {
- cutIndex();
- cut("CutsObjects", "JetET", " |ET|", eT);
- cutPhi(phi);
- cutEta(eta);
- cut("CutsObjects", "JetEMfraction", " |EM fraction|", emfrac);
- cut("CutsObjects", "JetVxFraction", " |Vx Fraction|", jvf);
-
- /* Placeholder for jet quality cuts (added by Nikolina Ilic)
- cut("CutsObjects", "JetTime", " |dt(jet,coll)|", time);
- cut("CutsObjects", "JetTileGap3F", " TileGap3F", tileGap3f);
- cut("CutsObjects", "JetfCORRcell", " Already corrected cell level correction", fcorCell);
- cut("CutsObjects", "JetfCORRjetLevel", " Correction by jet level estimation", getfCorJetLevel());
- cut("CutsObjects", "JetHECfQ", " HECf-Quality", getHECfQ());
- cut("CutsObjects", "JetOOTEf", " Out-Of-Time Energy frac", OutOfTimeEfrac);
- */
- }
-
- public void colorbyBJets() {
- //Initialy color all jets with constant color
- for (int i = 0; i < numData; i++) {
- int constantColor2 = parameterStore.get("Jet", "Constant").getI();
- color[i] = (byte) constantColor2;
- }
-
- //Read necessary information to colour Jets
- int bTagValue_user = parameterStore.get("CutsObjects", "JetBTagger").getI(); //getting user B-tagger preference
- int constantColor = parameterStore.get("BJet", "Constant").getI();
- int constantColor2 = parameterStore.get("Jet", "Constant").getI();
-
- //if b-tagging information is contained in xml file
- if(bTagValue != null) {
- int mod = bTagValue.length / eta.length; //Number of Btaggers - eta.length is the number of Jets
- double s = parameterStore.get("CutsObjects", "JetBTagweight").getD();
- for (int i = 0; i < eta.length; i++) {
- color[i] = (byte) constantColor2;
- if(bTagValue[bTagValue_user + i*mod]>s){
- color[i] = (byte) constantColor;
- }
- }
- }
- }
-
-
-
-
- protected int internalColor()
- {
- int colorFunction = APar.instance().get(PARAMETER_GROUP, "ColorFunction").getI();
-
- if (colorFunction == 0)
- {
- colorByConstant();
- }
- else if(colorFunction == 1)
- {
- colorByIndex();
- }
- else if(colorFunction == 2)
- {
- colorByCollection();
- }
- else if (colorFunction == 3)
- {
- colorbyBJets();
- }
- return 3;
- }
-
- public String getHitInfo(int index)
- {
- int simpleOutput = AGlobals.instance().getSimpleOutput();
- if(simpleOutput>0){
- String output = getNameScreenName()+" index: " + index;
- if(simpleOutput==1 || simpleOutput==3)
- output+= "\n ET="+String.format("%.3f",eT[index])+" GeV\n "+
- AMath.ETA+" = "+String.format("%.3f",eta[index])+"\n "+
- AMath.PHI+" = "+String.format("%.3f",Math.toDegrees(phi[index]))+AMath.DEGREES;
- if(simpleOutput==2 || simpleOutput==3)
- output+= "\n Ex="+String.format("%.3f",eT[index]*Math.cos(phi[index]))+" GeV "+
- "\n Ey="+String.format("%.3f",eT[index]*Math.sin(phi[index]))+" GeV "+
- "\n Ez="+String.format("%.3f",eT[index]*Math.sinh(eta[index]))+" GeV ";
- return output;
- }
-
- String msg;
- String k = this.getStoreGateKey();
- String sgKey = k != null ? k : "n/a";
- String printPt = "";
- if(has4Vect){
- printPt = "\n PT = " + String.format("%.3f",pT[index]) + " GeV";
- }
- msg = getNameScreenName() + " (id: " + id[index] + " index: " + index + ")\n" +
- " storegate key: " + sgKey + printPt + "\n ET = " +
- String.format("%.3f",eT[index]) + " GeV" + "\n E = " +
- String.format("%.3f",Math.abs(eT[index] / Math.cos(AMath.lambda(eta[index])))) +
- " GeV" + "\n " + AMath.ETA + " = " + String.format("%.3f",eta[index]) + "\n " +
- AMath.PHI + " = " + String.format("%.3f",Math.toDegrees(phi[index])) +
- AMath.DEGREES + " (" + String.format("%.3f",phi[index]) + " rad)";
-
- if(isGood != null) msg += "\n Selection: isGood =" + isGood[index] + "(isBad = " + isBad[index] + ", isUgly = " + isUgly[index] + ")";
- if(hecf != null) msg += "\n hecf = " + String.format("%.2f",hecf[index])+ ", n90cells = " + n90cells[index] + " (n90const = " + n90const[index] + ")";
- if (emfrac != null) msg += "\n emfrac = " + String.format("%.2f",emfrac[index]);
- if (quality != null) msg += "\n quality = " + String.format("%.2f",quality[index]);
- if (qualityLAr != null) msg += "(qLAr = " + String.format("%.2f",qualityLAr[index]) + ")";
-
- if (hasJvf)
- {
- msg += "\n jvf = " + String.format("%.2f",jvf[index]);
- }
- else
- {
- msg += "\n jvf n/a ";
- }
- if (weight != null) msg += " b-weight = " + String.format("%.2f",weight[index]);
- // Displaying bTagValues and bTagnames to the outputscreen
- if(bTagValue != null)
- {
- //calculating "multiple" number
- int Div = (bTagValue.length)/(eta.length);
- msg += "\n b-Taggers: ";
- for (int s=0;s<Div;s++)
- {
- msg += bTagName[index*Div + s] + "=" + String.format("%.2f",bTagValue[index*Div + s]) + ", ";
- }
- }
- if (time != null) msg += "\n time = " + String.format("%.2f",time[index]) + " ns (clus time = " + String.format("%.2f",timeClusters[index]) + " ns)";
- if (OutOfTimeEfrac != null) msg += "\n Out-Of-Time Energy fraction = " + String.format("%.2f", OutOfTimeEfrac[index]);
- if (fracSamplingMax != null) msg += "\n fracSamplingMax = " + String.format("%.2f",fracSamplingMax[index]) + " (sMax = " + caloSample[(int) sMax[index]] + ")";
- if (tileGap3f != null) msg += "\n tileGap3f = " + String.format("%.2f",tileGap3f[index]) + ", fcorCell=" + String.format("%.2f",fcorCell[index]) + ", fcorJet=" + String.format("%.2f",fcorJet[index]);
- if (fcorDotx != null) msg += "\n fcorDotx=" + String.format("%.2f",fcorDotx[index]) + " (not implemented yet)";
-
- return msg;
- }
-
- // info on Jet collections contained in v-plot rubberband selection
- public String getVPHitInfo()
- {
- makeDrawList();
- if (numDraw == 0)
- return "";
- double sumE = 0.;
- double sumEt = 0.;
-
- for (int i = 0; i < numDraw; ++i)
- {
- sumEt += Math.abs(eT[listdl[i]]);
- sumE += Math.abs(eT[listdl[i]] / Math.cos(AMath.lambda(eta[listdl[i]])));
- }
-
- String key = getFullName();
- String msg = numDraw + " " + (key != null ? "" + key : getNameScreenName());
- msg += " sum(ET) = " + String.format("%.1f",sumEt) + " sum(E) = " + String.format("%.1f",sumE);
-
- return msg;
- }
-
- public A4Vector get4Vector(int num, int[] list)
- {
- A4Vector sum = new A4Vector();
- if(has4Vect){
- for (int i = 0; i < num; ++i)
- {
- int k = list[i];
- A4Vector start = new A4Vector();
- start.setPtEtaPhiM(pT[k],eta[k],phi[k],mass[k]);
- sum.add(start);
- }
- }else{
- for (int i = 0; i < num; ++i)
- {
- int k = list[i];
- A3Vector start = A3Vector.fromRhoPhiZ(0., 0., 0.);
- double tL = AMath.tanLambda(eta[k]);
- A3Vector stop = A3Vector.fromRhoPhiZ(1., phi[k], tL);
- A3Vector v = (stop.subtract(start)).normalize();
- double p = eT[k] / Math.sqrt(1. - v.z * v.z);
- sum.add(new A4Vector(v.scale(p), 0.));
- }
- }
- return sum;
- }
-
- public void draw(AWindow window, AGraphics ag, AProjection2D projection)
- {
- if (projection instanceof AProjectionVP)
- {
- ACoord centers = window.calculateDisplay(getUser(projection));
- int[] drawlist = centers.index;
- double eLimit = 0.05;
- int numPoints = 25;
- double[][][] hv = new double[2][drawlist.length][numPoints];
-
- for (int i = 0; i < drawlist.length; ++i)
- {
- int list = drawlist[i];
- int jetMode = parameterStore.get("VP", "Jet").getI();
- double e;
- if (jetMode == 0)
- // showing jet in ET
- e = Math.abs(eT[list]);
- else
- // showing jet in E
- e = Math.abs(eT[list] / Math.cos(AMath.lambda(eta[list])));
- int d = (int) (Math.sqrt((e / eLimit) / Math.PI));
- if (d == 0)
- d = 1;
- for (int j = 0; j < numPoints; j++)
- {
- hv[0][i][j] = centers.hv[0][0][i] + d * Math.cos(Math.PI * 2 * j / (numPoints - 1));
- hv[1][i][j] = centers.hv[1][0][i] + d * Math.sin(Math.PI * 2 * j / (numPoints - 1));
- }
- }
- ag.draw(new ACoord(hv, drawlist, this, ACoord.POLYLINES));
- }
- else
- {
- super.draw(window, ag, projection);
- }
- }
-
- protected int getDrawOrFill()
- {
- return AGraphics.FILL;
- }
-
- protected ACoord getVPUser()
- {
- makeDrawList();
- double[] h = new double[numDraw];
- double[] v = new double[numDraw];
- int[] index = new int[numDraw];
-
- for (int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
- h[i] = eta[list];
- v[i] = Math.toDegrees(phi[list]);
- index[i] = list;
- }
- return new ACoord(h, v, index, this).includePhiWrapAround("VP");
- }
-
- @Override
- protected ACoord getYXUser()
- {
- int coneSmooth = 20;
- makeDrawList();
- double[][][] hv = new double[2][numDraw][(2*coneSmooth)];
- int[] index = new int[numDraw];
-
- String k = this.getStoreGateKey();
- String sgKey = k != null ? k : "n/a";
-
- double dphi = 0.4;
-
- if(sgKey.contains("Kt6"))
- dphi = 0.6;
- if(sgKey.contains("Kt1"))
- dphi = 1.0;
-
- double rhoMinus = parameterStore.get("Jet","Innerdrawradius").getD();
- double maxEnergy = parameterStore.get("Projection", "EnergyMax").getD();
- double s = parameterStore.get("Jet", "Scale").getD();
- double rhoMax = s*1000;
- if (0==s) return ACoord.NO_POLYLINES;
-
- for(int i=0; i<numDraw; i++)
- {
- int list = listdl[i];
- double phiPlus = phi[list] + dphi;
- double phiMinus = phi[list] - dphi;
-
- //if no composite particles increase jet size
- //Vector keys = (Vector) event.getCollections().get("CompositeParticle");
- //if (keys == null || !parameterStore.get("Data", "CompositeParticle").getStatus()) rhoMax=1000;//1800;
-
- double rhoPlus = rhoMax;
- if(Math.abs(eT[list]) < maxEnergy) {
- if(parameterStore.get("Jet", "ScaleType").getI() == 1) //sq root
- rhoPlus = rhoMinus + rhoMax * (Math.sqrt (Math.abs(eT[list])/maxEnergy));
- if(parameterStore.get("Jet", "ScaleType").getI() == 0) // linear
- rhoPlus = rhoMinus + rhoMax * (Math.abs(eT[list])/maxEnergy);
- }
-
- double vx = parameterStore.get("Event", "XVtx").getD();
- double vy = parameterStore.get("Event", "YVtx").getD();
-
- double h_shift = vx;
- double v_shift = vy;
-
- // the loop interpolates between the inner and outer edge of the jet to draw the arc
-
- // draw the outer arc
- for(int j=0; j<coneSmooth; j++){
- float f = ((float)j)/(coneSmooth-1);
- hv[0][i][j] = h_shift + (rhoPlus) * Math.cos(((1-f)*phiPlus + (f)*phiMinus));
- hv[1][i][j] = v_shift + (rhoPlus) * Math.sin(((1-f)*phiPlus + (f)*phiMinus));
- }
-
- // draw the inner arc
- for(int j=coneSmooth; j<(2*coneSmooth); j++){
- float f = ((float)j-coneSmooth)/(coneSmooth-1);
- hv[0][i][j] = h_shift + (rhoMinus) * Math.cos(((1-f)*phiMinus + (f)*phiPlus));
- hv[1][i][j] = v_shift + (rhoMinus) * Math.sin(((1-f)*phiMinus + (f)*phiPlus));
- }
-
- index[i] = list;
- }
- return new ACoord(hv, index, this, ACoord.TRANSPARENT_POLYGONS);
- }
-
- protected ACoord getFRUser()
- {
- makeDrawList();
- double[][][] hv = new double[2][numDraw][4];
- int[] index = new int[numDraw];
-
- String k = this.getStoreGateKey();
- String sgKey = k != null ? k : "n/a";
-
- double dphi = 0.4;
-
- if(sgKey.contains("Kt6"))
- dphi = 0.6;
- if(sgKey.contains("Kt1"))
- dphi = 1.0;
-
- double s = parameterStore.get("Jet", "Scale").getD();
- double rhoMax = s*1500;
- double rhoMinus = parameterStore.get("Jet","Innerdrawradius").getD();
- double maxEnergy = parameterStore.get("Projection", "EnergyMax").getD();
- if (0==s) return ACoord.NO_POLYLINES;
-
- for(int i=0; i<numDraw; i++)
- {
- int list = listdl[i];
- double phiPlus = phi[list] + dphi;
- double phiMinus = phi[list] - dphi;
-
- //if no composite particles increase jet size
- //Vector keys = (Vector) event.getCollections().get("CompositeParticle");
- //if (keys == null || !parameterStore.get("Data", "CompositeParticle").getStatus()) rhoMax=1000;//1800;
-
- double rhoPlus = rhoMinus + rhoMax;
- if(Math.abs(eT[list]) < maxEnergy) {
- if(parameterStore.get("Jet", "ScaleType").getI() == 1) //sq root
- rhoPlus = rhoMinus + rhoMax * (Math.sqrt (Math.abs(eT[list])/maxEnergy));
- if(parameterStore.get("Jet", "ScaleType").getI() == 0) // linear
- rhoPlus = rhoMinus + rhoMax * (Math.abs(eT[list])/maxEnergy);
- }
-
- hv[0][i][0] = rhoMinus;
- hv[1][i][0] = Math.toDegrees(phiMinus);
-
- hv[0][i][1] = rhoMinus;
- hv[1][i][1] = Math.toDegrees(phiPlus);
-
- hv[0][i][2] = rhoPlus;
- hv[1][i][2] = Math.toDegrees(phiPlus);
-
- hv[0][i][3] = rhoPlus;
- hv[1][i][3] = Math.toDegrees(phiMinus);
-
- index[i] = list;
- }
- return new ACoord(hv, index, this, ACoord.TRANSPARENT_POLYGONS).includePhiWrapAround("FR");
- }
-
- protected double Theta (double eta, int rSign)
- {
- // calculate theta based on the eta value
- double theta = Math.atan(Math.exp(-Math.abs(eta))) * 2.0;
- if ((eta > 0.) && (rSign == -1))
- theta = 2 * Math.PI - theta;
- else if ((eta < 0.) && (rSign == -1))
- theta += Math.PI;
- else if ((eta < 0.) && (rSign == 1))
- theta = Math.PI - theta;
-
- return theta;
- }
-
- protected ACoord getRZUser()
- {
- int coneSmooth = 20;
- double s = parameterStore.get("Jet", "Scale").getD();
- if (0==s) return ACoord.NO_POLYLINES;
- makeDrawList();
- double[][][] hv = new double[2][numDraw][(2*coneSmooth)];
- int[] index = new int[numDraw];
-
- double innerRadius = parameterStore.get("Jet","Innerdrawradius").getD();
-
- String k = this.getStoreGateKey();
- String sgKey = k != null ? k : "n/a";
-
- double deta = 0.4;
-
- if(sgKey.contains("Kt6"))
- deta = 0.6;
- if(sgKey.contains("Kt1"))
- deta = 1.0;
-
-
- for(int i=0; i<numDraw; i++)
- {
- int list = listdl[i];
- double phiMid = Math.toRadians(parameterStore.get("RZ", "Phi").getD());
- double phiDiff = Math.abs(phi[list]-phiMid);
- int rSign;
- if (phiDiff > Math.PI/2. && phiDiff <= 3*Math.PI/2.)
- rSign = -1;
- else
- rSign = 1;
-
- double theta = Theta(eta[list],rSign);
- double thetaPlus = Theta(eta[list] + deta, rSign);
- double thetaMinus = Theta(eta[list] - deta, rSign);
-
- // decide the region based on the theta value
- final byte TOP_BOTTOM = 0;
- final byte LEFT_RIGHT = 1;
- byte region = TOP_BOTTOM;
- // hard-coded value is based on the values in Geometry
- if(Math.abs(Math.tan(theta)) < 0.8)
- region = LEFT_RIGHT;
-
- double radiusMinus = 0.;
-
- switch(region)
- {
- case TOP_BOTTOM:
- radiusMinus = innerRadius / Math.abs(Math.sin(theta));
- break;
- case LEFT_RIGHT:
- radiusMinus = innerRadius / Math.abs(Math.cos(theta));
- break;
- }
- //compare to AAODData for rhoMax/Minus values
- double radiusMax = s*2500.;
-
- //if no composite particles increase jet size
- //Vector keys = (Vector) event.getCollections().get("CompositeParticle");
- //if (keys == null || !parameterStore.get("Data", "CompositeParticle").getStatus()) radiusMax+=200;
-
- double maxEnergy = parameterStore.get("Projection", "EnergyMax").getD();
- double radiusPlus = radiusMinus + radiusMax;
- if(Math.abs(eT[list] / Math.cos(AMath.lambda(eta[list]))) < maxEnergy)
- {
- if(parameterStore.get("Jet", "ScaleType").getI() == 1) //sq root
- radiusPlus = radiusMinus + radiusMax * (Math.sqrt (Math.abs(eT[list] / Math.cos(AMath.lambda(eta[list])))/maxEnergy));
- if(parameterStore.get("Jet", "ScaleType").getI() == 0) // linear
- radiusPlus = radiusMinus + radiusMax *((Math.abs(eT[list] / Math.cos(AMath.lambda(eta[list]))))/maxEnergy);
- }
-
- double vx = parameterStore.get("Event", "XVtx").getD();
- double vy = parameterStore.get("Event", "YVtx").getD();
- double vz = parameterStore.get("Event", "ZVtx").getD();
-
- double h_shift = vz;
- double v_shift = Math.sqrt(vx*vx + vy*vy);
-
- // the loop interpolates between the inner and outer edge of the jet to draw the arc
- // draw the outer arc
- for(int j=0; j<coneSmooth; j++){
- float f = ((float)j)/(coneSmooth-1);
- hv[0][i][j] = h_shift + (radiusPlus) * Math.cos(((1-f)*thetaPlus + (f)*thetaMinus));
- hv[1][i][j] = v_shift + (radiusPlus) * Math.sin(((1-f)*thetaPlus + (f)*thetaMinus));
- }
-
- // draw the inner arc
- for(int j=coneSmooth; j<(2*coneSmooth); j++){
- float f = ((float)j-coneSmooth)/(coneSmooth-1);
- hv[0][i][j] = h_shift + (radiusMinus) * Math.cos(((1-f)*thetaMinus + (f)*thetaPlus));
- hv[1][i][j] = v_shift + (radiusMinus) * Math.sin(((1-f)*thetaMinus + (f)*thetaPlus));
- }
-
- index[i] = list;
- }
- return new ACoord(hv, index, this, ACoord.TRANSPARENT_POLYGONS);
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/data/AJetROIData.java b/graphics/AtlantisJava/src/atlantis/data/AJetROIData.java
deleted file mode 100755
index c47c2ce9299..00000000000
--- a/graphics/AtlantisJava/src/atlantis/data/AJetROIData.java
+++ /dev/null
@@ -1,38 +0,0 @@
-package atlantis.data;
-
-import atlantis.event.*;
-import atlantis.utils.AHashMap;
-
-/**
- *
- * Jet Region Of Interest
- *
- * @author Zdenek Maxa, Qiang Lu
- */
-public class AJetROIData extends AROIData
-{
-
- AJetROIData(AHashMap p, AEvent e)
- {
- super(p,e);
- } // AJetROIData() ------------------------------------------------------
-
-
- public String getParameterGroup()
- {
- return "JetROI";
- } // getParameterGroup() ------------------------------------------------
-
-
- public String getName()
- {
- return "JetROI";
- } // getName() ----------------------------------------------------------
-
-
- public String getNameScreenName()
- {
- return "JetROI";
- } // getNameScreenName() ------------------------------------------------
-
-} // class AJetROIData ======================================================
diff --git a/graphics/AtlantisJava/src/atlantis/data/ALArData.java b/graphics/AtlantisJava/src/atlantis/data/ALArData.java
deleted file mode 100644
index 7b0efc9cd77..00000000000
--- a/graphics/AtlantisJava/src/atlantis/data/ALArData.java
+++ /dev/null
@@ -1,1032 +0,0 @@
-package atlantis.data;
-
-import atlantis.event.*;
-import com.Ostermiller.util.CSVParser;
-
-import java.io.IOException;
-import java.io.InputStream;
-import java.io.StringReader;
-import java.io.FileNotFoundException;
-
-import atlantis.geometry.ABarrelCalorimeterDetector;
-import atlantis.geometry.ACalorimeterDetector;
-import atlantis.globals.AGlobals;
-import atlantis.graphics.ACoord;
-import atlantis.output.ALogInterface;
-import atlantis.output.AOutput;
-import atlantis.projection.AProjection2D;
-import atlantis.projection.AProjectionFR;
-import atlantis.projection.AProjectionFZ;
-import atlantis.projection.AProjectionRZ;
-import atlantis.projection.AProjectionYX;
-import atlantis.utils.AAtlantisException;
-import atlantis.utils.AHashMap;
-import atlantis.utils.AIdHelper;
-import atlantis.utils.AMath;
-import atlantis.utils.AUtilities;
-import atlantis.parameters.AParameter;
-import atlantis.utils.ALogger;
-
-
-/**
- * The Liquid Argon ElectroMagnetic Calorimeter
- *
- * @author Eric Jansen
- */
-public class ALArData extends ACalorimeterData
-{
- private static ALogger logger = ALogger.getLogger(ALArData.class);
-
- // data for real pulse shapes plots
- private int numSamplings = 0;
- private int[][] adcCounts = null;
- private float[] cellTime = null;
- private int[] cellGain = null;
- private float[] cellPedestal = null;
- private float[] adc2Mev = null;
- private static boolean pulseShapesDataAvailable = false;
- private static final String LOOKUP_TABLE_FILE =
- AGlobals.instance().getHomeDirectory() + "configuration" +
- System.getProperty("file.separator") +
- "rpsplt_lar.csv";
- // number of lookup table values for real pulse shapes plots calculation
- private static final short NUMBER_OF_LOOKUP_VALUES = 799;
-
-
-
- ALArData(AHashMap p, AEvent e)
- {
- super(p,e);
-
- for (int i = 0; i < numData; i++)
- {
- try
- {
- side[i] = (byte) AIdHelper.larBarrelEndcap(id[i]);
- etaIndex[i] = (short) AIdHelper.larEta(id[i]);
- phiIndex[i] = (short) AIdHelper.larPhi(id[i]);
- sampling[i] = AIdHelper.larSampling(id[i]);
- }
- catch (AAtlantisException aex)
- {
- logger.warn("Problem decoding ID " + id[i] + " in " +
- CALORIMETER_NAME + ": " + aex.getMessage(), aex);
- side[i] = 0;
- etaIndex[i] = -1;
- phiIndex[i] = -1;
- sampling[i] = -1;
- }
- }
-
- makeHitToGeometryMapping();
- for (int i = 0; i < et.length; ++i)
- {
- et[i] = Math.abs(energy[i] / (float) Math.cosh(eta[i]));
- }
-
- // Collect some constants we need for the histograms.
- for (int i = 0; i < ACalorimeterDetector.count(); i++)
- {
-
- if (ACalorimeterDetector.get(i).getName().indexOf(CALORIMETER_NAME) >= 0)
- {
- if (ACalorimeterDetector.get(i) instanceof ABarrelCalorimeterDetector)
- {
- if (innerR == 0.0 || ACalorimeterDetector.get(i).getRMin() < innerR)
- {
- innerR = ACalorimeterDetector.get(i).getRMin();
- }
- }
- else
- {
- if (innerZ == 0.0 || ACalorimeterDetector.get(i).getZMin() < innerZ)
- {
- innerZ = ACalorimeterDetector.get(i).getZMin();
- }
- }
- if (outerR == 0.0 || ACalorimeterDetector.get(i).getRMax() > outerR)
- {
- outerR = ACalorimeterDetector.get(i).getRMax();
- }
- if (outerZ == 0.0 || ACalorimeterDetector.get(i).getZMax() > outerZ)
- {
- outerZ = ACalorimeterDetector.get(i).getZMax();
- }
- if (outerEta == 0.0 || ACalorimeterDetector.get(i).getEtaMax() > outerEta)
- {
- outerEta = ACalorimeterDetector.get(i).getEtaMax();
- }
- if (phiGranularity == 0.0 || ACalorimeterDetector.get(i).getDeltaPhi() < phiGranularity)
- {
- phiGranularity = ACalorimeterDetector.get(i).getDeltaPhi();
- }
- if (etaGranularity == 0.0 || ACalorimeterDetector.get(i).getDeltaEta() < etaGranularity)
- {
- etaGranularity = ACalorimeterDetector.get(i).getDeltaEta();
- }
- }
- }
-
- // Add a little bit of extra margin to prevent binning errors due to
- // rounding of numbers.
- outerEta += etaGranularity;
-
- readPulseShapePlotData(p);
-
- } // ALArData() ---------------------------------------------------------
-
-
-
- private void readPulseShapePlotData(AHashMap p)
- {
- // read ADCCounts and cell data for real pulse shapes plots
- adcCounts = super.getADCCountsData(p);
-
- // read LAr digits (cell data) for real pulse shapes plots
- cellTime = (p.get("cellTime") != null) ? p.getFloatArray("cellTime") : null;
- cellGain = (p.get("cellGain") != null) ? p.getIntArray("cellGain") : null;
- cellPedestal = (p.get("cellPedestal") != null) ? p.getFloatArray("cellPedestal") : null;
- adc2Mev = (p.get("adc2Mev") != null) ? p.getFloatArray("adc2Mev") : null;
-
- pulseShapesDataAvailable = false;
- if(adcCounts != null && cellTime != null && cellGain != null &&
- cellPedestal != null && adc2Mev != null)
- {
- pulseShapesDataAvailable = true;
- numSamplings = adcCounts[0].length;
-
- logger.debug(CALORIMETER_NAME +
- ": data for real pulse shape plots available");
-
- if(ACalorimeterRPSPLT.areLarLookupTablesInitialized())
- {
- logger.debug(CALORIMETER_NAME +
- ": lookup tables have already been read in");
- }
- else
- {
- logger.debug(CALORIMETER_NAME +
- ": lookup table values have not been read in yet\n" +
- " trying to read file: " + LOOKUP_TABLE_FILE);
-
- try
- {
- readLookupTableFile();
-
- logger.debug(CALORIMETER_NAME +
- ": values from " + LOOKUP_TABLE_FILE +
- " successfully read in");
- }
- catch(AAtlantisException ex)
- {
- logger.error(CALORIMETER_NAME +
- ": reading " + LOOKUP_TABLE_FILE +
- " failed, real pulse shapes plots will not " +
- "be available, reason: " + ex.getMessage(), ex);
- pulseShapesDataAvailable = false;
- }
- }
- }
-
- } // readPulseShapePlotData() -------------------------------------------
-
-
-
- /**
- * readLookupTableFile() reads in comma separated values (CSV) file
- * with LAr real pulse shapes plots time and amplitude lookup values
- * @param fileName String
- * @throws AAtlantisException
- */
- private void readLookupTableFile() throws AAtlantisException
- {
- try
- {
- InputStream is = AUtilities.getFileAsStream(LOOKUP_TABLE_FILE);
- CSVParser parser = new CSVParser(is);
- parser.setCommentStart("#");
- String arrayName = null;
-
- while((arrayName = parser.nextValue()) != null)
- {
- String valueArray = parser.nextValue(); // shall now contain all values
- CSVParser parserArray = new CSVParser(new StringReader(valueArray));
- String[][] s = parserArray.getAllValues();
-
- float[] array = getLookupTableArray(s, NUMBER_OF_LOOKUP_VALUES);
- ACalorimeterRPSPLT.setLarTable(arrayName, array);
- } // while
- }
- catch(FileNotFoundException e)
- {
- throw new AAtlantisException("could not find file: " +
- LOOKUP_TABLE_FILE);
- }
- catch(IOException e)
- {
- throw new AAtlantisException("exception while reading file: " +
- LOOKUP_TABLE_FILE);
- }
- catch(AAtlantisException e)
- {
- throw e;
- }
-
- } // readLookupTableFile() ----------------------------------------------
-
-
-
- /**
- *
- * @param index int
- * @param lookupTablesInfo String
- * Debug info method in order to make sure that correct lookup table
- * is used given barrel/endcap, sampling and region of LAr.
- */
- private void pulseShapePlotsDebugInfo(int index, String lookupTableName)
- {
- String msg = null;
- try {
- msg = "\n barrel/endcap value: " +
- AIdHelper.larBarrelEndcap(id[index]);
- msg += " is ";
- msg += AIdHelper.larIsBarrel(id[index]) ? "barrel" : "endcap";
- msg += "\n sampling/layer: " + sampling[index];
- msg += "\n region: " + AIdHelper.larRegion(id[index]);
- msg += "\n lookup table used: " + lookupTableName;
- logger.debug(msg + "\n");
- } catch (AAtlantisException aaex) {
- logger.debug("\n exception: " + aaex.getMessage(), aaex);
- }
- } // pulseShapePlotsDebugInfo() -----------------------------------------
-
-
-
- /**
- * This method is used when calculating real pulse shapes plots.
- * It is called from getLookupTableForPulseShapesPlots()
- * It calculates index of the 0.1 eta bin the argument eta
- * (eta of a cell) falls into. Thus it determines which eta
- * range a cell belongs to (eta ranges are last level of cells
- * division from barrel/endcap, layer, region.
- * startIndex argument tells which eta range we start counting from
- * (given the eta ranges division it may not necessarily be from 0).
- * If eta doesn't fall into a specified interval, empty String
- * is returned - then missing ETAx suffix will cause retrieving
- * of the float[] will fail.
- *
- * @param etaFrom
- * @param etaTo
- * @return
- */
- private static String getEtaBinIndex(float etaFrom, float etaTo,
- float cellEta, int startIndex)
- {
- float step = 0.1f; // step, size of the eta bins
- float absEta = Math.abs(cellEta);
- int index = startIndex;
-
- for(float f = etaFrom; f < etaTo; f += step, index++)
- {
- if(absEta > f && absEta < f + step)
- {
- logger.debug("eta range calculation: cell eta = " + cellEta + " " +
- "etaFrom = " + etaFrom + " etaTo = " + etaTo);
- logger.debug("eta range index result: " + index +
- " (index offset was: " + startIndex + ")");
- return "ETA" + index + "_" ;
- }
- }
-
- // calculating bin failed, retrieving the array will fail later
- return "";
-
- } // calculateEtaBinIndex() ---------------------------------------------
-
-
-
- /**
- * Method returns correct float[] array for amplitude lookup table
- * depending whether a cell (determined by index, resp. id[index]) is in
- * barrel, endcap, which layer and which region or which eta range.
- * This method accesses ACalorimeterRPSPLT
- * Methods contains constant value defining parts of LAr detector
- * (as used in AIdHelper) and also eta range constants provided by
- * the LAr community.
- *
- * @param index int
- * @return float[]
- */
- private float[] getLookupTableForPulseShapesPlots(int index) throws AAtlantisException
- {
- float[] amplitude = null; // lookup table amplitude values
-
- // helper variable - absolute value of eta - for checking of the eta range
- float absEta = Math.abs(eta[index]);
-
- // the key for ACalorimeterRPSPLT.getLarTable(key) will gradually be
- // constructed depending on barrel/endcap, layer, region and eta range
- String lookupTableKey = "LAR_"; // start of the name all LAR_ tables
-
-
- if(AIdHelper.larIsBarrel(id[index]))
- {
- // it is barrel
- lookupTableKey += "BARREL_";
- switch(sampling[index])
- {
- case 0: // layer 0
- // plot ADC counts only for this layer
- String[] decodedId = AIdHelper.getFullIdentifier(id[index]);
- String title = "LAr cell: " + decodedId[0];
- int[][] data = { adcCounts[index] };
- APulseShapePlot.plotADCCounts(data, title, null);
- throw new AAtlantisException("ADC counts plot only, pulse shape plot not " +
- "implemented for LAr barrel, layer 0");
- case 1:
- lookupTableKey += "LAYER1_"; // layer 1
- switch(AIdHelper.larRegion(id[index]))
- {
- case 0:
- lookupTableKey += "REGION0_";
- break;
- case 1:
- lookupTableKey += "REGION1_";
- break;
- default:
- AOutput.append("\npulse shape plots - LAr barrel, " +
- "layer 1, region > 1. Using layer 1, " +
- "region 1 lookup table\n", ALogInterface.WARNING);
- lookupTableKey += "REGION1_";
- }
- break;
- case 2: // layer 2
- lookupTableKey += "LAYER2_"; // layer 2
- switch(AIdHelper.larRegion(id[index]))
- {
- case 0:
- lookupTableKey += "REGION0_";
- break;
- case 1:
- lookupTableKey += "REGION1_";
- break;
- default:
- AOutput.append("\npulse shape plots - LAr barrel, " +
- "layer 2, region > 1. Using layer 2, " +
- "region 1 lookup table\n", ALogInterface.WARNING);
- lookupTableKey += "REGION1_";
- }
- break;
- case 3: // layer 3
- lookupTableKey += "LAYER3_REGION0_";
- break;
- }
- } // if(AIdHelper.larIsBarrel(id[index]))
- else
- {
- // we are in the endcap
- lookupTableKey += "ENDCAP_";
- switch(sampling[index])
- {
- case 0: // layer 0
- // only one region and one eta range on this layer
- lookupTableKey += "LAYER0_REGION0_ETA0_";
- break;
- case 1: // layer 1
- lookupTableKey += "LAYER1_";
- switch(AIdHelper.larRegion(id[index]))
- {
- case 0:
- lookupTableKey += "REGION0_";
- if(absEta > 1.375f && absEta < 1.425f)
- {
- lookupTableKey += "ETA0_"; // first eta range
- }
- else
- {
- // eta ranges with step 0.1 provided by Andre
- // start index counting from 1, 0 range is used above
- lookupTableKey += getEtaBinIndex(2.5f, 3.2f, eta[index], 1);
- }
- break;
- case 1:
- lookupTableKey += "REGION1_ETA0_"; // no eta subdivision
- break;
- case 2:
- lookupTableKey += "REGION2_";
- // starting from first range, startIndex 0
- lookupTableKey += getEtaBinIndex(1.5f, 1.8f, eta[index], 0);
- break;
- case 3:
- lookupTableKey += "REGION3_";
- lookupTableKey += getEtaBinIndex(1.8f, 2.0f, eta[index], 0);
- break;
- case 4:
- lookupTableKey += "REGION4_";
- lookupTableKey += getEtaBinIndex(2.0f, 2.4f, eta[index], 0);
- break;
- case 5:
- lookupTableKey += "REGION5_";
- if(absEta > 2.4f && absEta < 2.5f)
- {
- lookupTableKey += "ETA0_";
- }
- break;
- default:
- AOutput.append("\npulse shape plots - LAr endcap, " +
- "layer 1, region > 5. Using layer 1, " +
- "region 5, eta range 0 lookup table\n",
- ALogInterface.WARNING);
- lookupTableKey += "REGION5_ETA0_";
- }
- break;
- case 2: // layer 2
- lookupTableKey += "LAYER2_";
- switch(AIdHelper.larRegion(id[index]))
- {
- case 0:
- lookupTableKey += "REGION0_";
- if(absEta > 1.375f && absEta < 1.425f)
- {
- lookupTableKey += "ETA0_"; // first eta range
- }
- else
- {
- // eta ranges with step 0.1 provided by Andre
- // start index counting from 1, 0 range is used above
- lookupTableKey += getEtaBinIndex(2.5f, 3.2f, eta[index], 1);
- }
- break;
- case 1:
- lookupTableKey += "REGION1_";
- lookupTableKey += getEtaBinIndex(1.425f, 2.5f, eta[index], 0);
- break;
- }
- break;
- case 3: // layer 3
- lookupTableKey += "LAYER3_";
- lookupTableKey += "REGION0_";
- lookupTableKey += getEtaBinIndex(1.5f, 2.5f, eta[index], 0);
- break;
- }
- } // else (endcap)
-
- lookupTableKey += "AMPLITUDE";
- pulseShapePlotsDebugInfo(index, lookupTableKey);
- amplitude = ACalorimeterRPSPLT.getLarTable(lookupTableKey);
-
- return amplitude;
-
- } // getLookupTableForPulseShapesPlots() -------------------------------
-
-
-
- /**
- * This method plots only the ADC counts and no pulse shape plot for a
- * given cell. This is useful when the pulse shape plot is not correct
- * but ADC count plot is still needed. The method is called from pick
- * interaction with D (digits only), see APickInteraction.pressed()
- * It is supposedly a temporary solution until LAr real pulse shapes
- * lookup tables are corrected / finalized and propagated to Atlantis.
- * @param index
- */
- public void plotADCCounts(int index)
- {
- if(pulseShapesDataAvailable)
- {
- String title = getPulseTitleString(index);
-
- int[][] adcCountsLocal = new int[][] { adcCounts[index] };
-
- logger.debug("Plotting only ADC counts plot ... ");
- APulseShapePlot.plotADCCounts(adcCountsLocal, title, null);
-
- } // if(pulseShapesDataAvailable)
- else
- {
- return;
- }
-
- } // plotADCCounts() ----------------------------------------------------
-
-
-
-// /**
-// * Call util class which plots cell pulse shapes provided that
-// * all real pulse shapes data is available
-// * Functions calculates values of real pulse shape calculated in the method
-// * getPhysicsPulseShape().
-// * This method is called from pick interaction.
-// *
-// * @param index int
-// */
- /*public void plotPulseShapes(int index)
- {
- if(pulseShapesDataAvailable)
- {
- String title = getPulseTitleString(index);
-
- int[][] adcCountsLocal = new int[][] { adcCounts[index] };
-
-
- if(super.checkADCCountsAvailability(adcCountsLocal))
- {
- // adc counts are available
- logger.debug(CALORIMETER_NAME + " adc counts (digits) are " +
- "available for pulse shapes plots for this cell.");
- }
- else
- {
- String m = "ADC counts are not available for this cell, " +
- "can't plot pulse shapes.";
- AOutput.append("\n" + m, ALogPane.WARNING);
- logger.warn(m);
- return;
- }
-
-
- float[] amplitude = null; // amplitude lookup table
- float[] time = null; // time lookup table
- try
- {
- time = ACalorimeterRPSPLT.getLarTable("LAR_TIME");
- amplitude = getLookupTableForPulseShapesPlots(index);
- }
- catch(AAtlantisException ex)
- {
- AOutput.append("\n" + ex.getMessage(), ALogPane.WARNING);
- logger.error(ex.getMessage());
- return;
- }
-
- // 1 .. 32 range (32 values of ADC counts, i.e. 32 samples), need to
- // get NUMBER_OF_LOOKUP_VALUES (769) within this range (starts from 1!).
- // Real data will have (probably) only 5 samples per cell
- double step = (adcCounts[0].length - 1) / (float) NUMBER_OF_LOOKUP_VALUES;
- double[][] realPulse = new double[1][NUMBER_OF_LOOKUP_VALUES]; // 1 channel
- double d = 1.0;
- // if adc2Mev != -1 -> use value from event file, otherwise predefined value
- // see comment at the getADC2MevFactorPredefined() method
- // factor variable is used as a flag whether or not to plot pulse shape,
- // if is -1 (adc2Mev not available), then want to see only the adc counts
- // and don't calculate the pulse shapes
- // getADC2MevFactorPredefined(index) is no longer in use, see comment at it
- float factor = adc2Mev[index];
-
- double energyLocal = energy[index] * 1000.0 / factor;
- try
- {
- if(factor != -1)
- {
- for(int i = 0; i < NUMBER_OF_LOOKUP_VALUES; i++)
- {
- d += step;
- realPulse[0][i] = super.getPhysicsPulseShape(d, cellTime[index],
- cellPedestal[index], energyLocal,
- amplitude, time, NUMBER_OF_LOOKUP_VALUES);
- }
- }
- }
- catch(AAtlantisException aaex)
- {
- AOutput.append(aaex.getMessage(), ALogPane.WARNING);
- logger.error(aaex.getMessage());
- return;
- }
-
- if(factor != -1)
- {
- logger.debug("adc2Mev factor available, plotting full plot.");
- APulseShapePlot.plotRealPulseShapes(adcCountsLocal, realPulse,
- step, null, title);
- }
- else
- {
- logger.debug("adc2Mev factor not available, plotting just adc counts.");
- APulseShapePlot.plotADCCounts(adcCountsLocal, title, null);
- }
-
- } // if(pulseShapesDataAvailable)
- else
- {
- return;
- }
-
- } */// plotPulseShapes() --------------------------------------------------
-
- @Override
- protected int[][] getADCCounts(int index) {
- if (pulseShapesDataAvailable) {
- for (int adc : adcCounts[index]) {
- // Only return something if it is non-zero
- if (adc != 0) return new int[][] { adcCounts[index] };
- }
- }
- return null;
- }
-
- /**
- * Calculate local time for pulse shape plots
- */
- protected double getLocalTime(double xTime, double cellTime, int numSamplings) {
- int nominalPeakSample = (int)(numSamplings / 2.);
- return ((xTime - nominalPeakSample + 3) * 25.0) - cellTime;
- }
-
- @Override
- protected double[][] getPulseShape(int index) {
-
- float[] amplitude = null; // amplitude lookup table
- float[] time = null; // time lookup table
- try
- {
- time = ACalorimeterRPSPLT.getLarTable("LAR_TIME");
- amplitude = getLookupTableForPulseShapesPlots(index);
- }
- catch(AAtlantisException ex)
- {
- AOutput.append("\n" + ex.getMessage(), ALogInterface.WARNING);
- logger.error(ex.getMessage());
- return null;
- }
-
- // 1 .. 32 range (32 values of ADC counts, i.e. 32 samples), need to
- // get NUMBER_OF_LOOKUP_VALUES (769) within this range (starts from 1!).
- // Real data will have (probably) only 5 samples per cell
- double step = getPulseStep(index);
- double[][] realPulse = new double[1][NUMBER_OF_LOOKUP_VALUES]; // 1 channel
- double d = 1.0;
- // if adc2Mev != -1 -> use value from event file, otherwise predefined value
- // see comment at the getADC2MevFactorPredefined() method
- // factor variable is used as a flag whether or not to plot pulse shape,
- // if is -1 (adc2Mev not available), then want to see only the adc counts
- // and don't calculate the pulse shapes
- // getADC2MevFactorPredefined(index) is no longer in use, see comment at it
- float factor = adc2Mev[index];
-
- double energyLocal = energy[index] * 1000.0 / factor;
- try
- {
- if(factor != -1)
- {
- for(int i = 0; i < NUMBER_OF_LOOKUP_VALUES; i++)
- {
- d += step;
- double localTime = getLocalTime(d, cellTime[index], this.numSamplings);
- realPulse[0][i] = super.getPhysicsPulseShape(localTime,
- cellPedestal[index], energyLocal,
- amplitude, time, NUMBER_OF_LOOKUP_VALUES);
- }
- }
- }
- catch(AAtlantisException aaex)
- {
- AOutput.append(aaex.getMessage(), ALogInterface.WARNING);
- logger.error(aaex.getMessage());
- return null;
- }
-
- if(factor != -1)
- {
- logger.debug("adc2Mev factor available, plotting full plot.");
- return realPulse;
- }
- else
- {
- return null;
- }
- }
-
- @Override
- protected double getPulseStep(int index) {
- return (adcCounts[0].length - 1) / (float) NUMBER_OF_LOOKUP_VALUES;
- }
-
-// /**
-// * Determines adc2Mev factor value for a cell. The number either comes
-// * with the event file (adc2Mev subtag), but sometimes is not available
-// * in Athena (in the database) which is indicated by -1 in the event file
-// * for a particular cell. In this case, use predefined constant in this
-// * method.
-// *
-// * zdenek (2008-09-15):
-// * These predefined values (which are used if adc2Mev factor is -1) should
-// * no longer be used. if the factor is not present, do not plot the pulse
-// * shape, just the ADC counts as these values are non-sense. The method
-// * and references to it should be removed after some time (if calo people
-// * don't change their mind to pre-define some other values and use those)
-//
-// * @param index int
-// * @return String
-// */
- /*
- private float getADC2MevFactorPredefined(int index)
- {
- boolean barrel = false;
- int layer = sampling[index];
-
- try
- {
- barrel = AIdHelper.larIsBarrel(id[index]);
- }
- catch (AAtlantisException e)
- {
- AOutput.append("Problem decoding ID " + id[index] +
- " in " + CALORIMETER_NAME + ": " + e.getMessage(),
- ALogPane.WARNING);
- return Float.NEGATIVE_INFINITY;
- }
-
- float r = Float.NEGATIVE_INFINITY;
- if(barrel)
- {
- switch(layer)
- {
- case 0: r = 7.0f;
- break;
- case 1: r = 2.5f;
- break;
- case 2: r = Math.abs(this.eta[index]) < 0.8 ? 10.0f : 18.0f;
- break;
- case 3: r = 9.0f;
- break;
- }
- }
- else
- {
- r = 16.0f;
- }
-
- return r;
-
- } // getADC2MevFactor() -------------------------------------------------
- */
-
-
- /**
- * Returns calo hit info
- *
- * @param index int
- * @return String
- */
- public String getHitInfo(int index)
- {
- int simpleOutput = AGlobals.instance().getSimpleOutput();
- if(simpleOutput>0){
- String output = getNameScreenName()+" index: " + index;
- if(simpleOutput==1 || simpleOutput==3)
- output+= "\n ET="+String.format("%.3f",et[index])+" GeV\n "+
- AMath.ETA+" = "+String.format("%.3f",eta[index])+"\n "+
- AMath.PHI+" = "+String.format("%.3f",Math.toDegrees(phi[index]))+AMath.DEGREES;
- if(simpleOutput==2 || simpleOutput==3)
- output+= "\n Ex="+String.format("%.3f",et[index]*Math.cos(phi[index]))+" GeV "+
- "\n Ey="+String.format("%.3f",et[index]*Math.sin(phi[index]))+" GeV "+
- "\n Ez="+String.format("%.3f",et[index]*Math.sinh(eta[index]))+" GeV ";
- return output;
- }
-
- String t = "";
- String cellInfo = "";
-
- // if decoded ID is required and implemented for LAr ...
- // String decodedId = AIdHelper.getDecodedTileIndentifier(id[index]);
- // t = decodedId + " " + super.getHitInfo(index);
- t = super.getHitInfo(index);
-
- cellInfo += "\n cell time = ";
- cellInfo += (cellTime != null) ? Float.toString(cellTime[index]) +
- " ns" : "n/a";
- cellInfo += "\n cell gain = ";
- cellInfo += (cellGain != null) ? Integer.toString(cellGain[index]) : "n/a";
- cellInfo += "\n cell pedestal = ";
- cellInfo += (cellPedestal != null) ? Float.toString(cellPedestal[index]) +
- " ADC counts" : "n/a";
-
- cellInfo += "\n ADC 2 MeV = ";
- if(adc2Mev == null)
- {
- cellInfo += "n/a";
- }
- else
- {
- // subtag adc2Mev was available in the event file
- if(adc2Mev[index] != -1)
- {
- // other than -1: the factor was available in
- // Athena (database) for this particular cell
- cellInfo += Float.toString(adc2Mev[index]) + " (from database)";
- }
- else
- {
- // -1 -> the factor wasn't available in Athena (database),
- // use hardcoded constant for this particular cell
- cellInfo += "-1 (n/a in database)";
- // see comment at getADC2MevFactorPredefined() method
- // using predefined " +
- // Float.toString(getADC2MevFactorPredefined(index));
- }
- }
-
- cellInfo += pulseShapesDataAvailable ? "" :
- "\n data for real pulse shapes plot n/a";
-
- return t + cellInfo;
-
- } // getHitInfo() -------------------------------------------------------
-
- @Override //ACalorimeterData
- //Gives the hit time for this cell
- protected double getTime(int hit)
- {
- if (cellTime == null) return 0.0;
- else return cellTime[hit];
- }
-
- private void cutEnergyByLayer(String groupName, String parameterName,
- String text, float[] array, int[] sampling, int currSampling)
- {
- AParameter par = parameterStore.get(groupName, parameterName);
-
- if(par.getStatus() && array != null)
- {
- double value = par.getD();
- String operator = par.getOperator();
- int num = 0;
-
- // this special cut shall have isMod="YES" attribute set, so
- // par.isModulus() is true, thus only Math.abs() values are considered
- if(operator.equals("<"))
- {
- for(int i = 0; i < numDraw; i++)
- {
- if(sampling[listdl[i]] == currSampling)
- {
- if(Math.abs(array[listdl[i]]) < value)
- {
- listdl[num++] = listdl[i];
- }
- }
- else
- {
- // don't check energy for other layers and don't cut
- listdl[num++] = listdl[i];
- }
- }
- }
- else if(operator.equals(">"))
- {
- // '>' really means '>=' for reals since they are real in
- // from ascii file and don't have full precison
- for(int i = 0; i < numDraw; i++)
- {
- if(sampling[listdl[i]] == currSampling)
- {
- if(Math.abs(array[listdl[i]]) >= value)
- {
- listdl[num++] = listdl[i];
- }
- }
- else
- {
- // don't check energy for other layers and don't cut
- listdl[num++] = listdl[i];
- }
- }
- }
- else
- {
- throw new Error(operator + " operator not sensible for floats");
- }
-
- numDraw = num;
- }
-
- } // cutEnergyByLayer() -------------------------------------------------
-
-
-
- protected void applyCuts()
- {
- super.applyCuts();
- cut("CutsCalo", "LArET", "LArET", et);
- cut("CutsCalo", "LArEnergy", "LArEnergy", energy);
-
- // energy cut (E) per layers
- cutEnergyByLayer("CutsCalo", "LArEnergyLayer0", "LArEnergyLayer0",
- energy, sampling, 0);
- cutEnergyByLayer("CutsCalo", "LArEnergyLayer1", "LArEnergyLayer1",
- energy, sampling, 1);
- cutEnergyByLayer("CutsCalo", "LArEnergyLayer2", "LArEnergyLayer2",
- energy, sampling, 2);
- cutEnergyByLayer("CutsCalo", "LArEnergyLayer3", "LArEnergyLayer3",
- energy, sampling, 3);
-
- // cut by LAr region (+- EndCap, All)
- int cutSub = parameterStore.get("CutsCalo", "LAr").getI();
- if(cutSub != -1)
- {
-
- int num = 0;
- for(int i = 0; i < numDraw; i++)
- {
-
- switch(cutSub){
- case 0:
- if(side[listdl[i]] == -2 || side[listdl[i]] == -3){
- listdl[num++] = listdl[i];
- }
- break;
- case 1:
- if(side[listdl[i]] == 2 || side[listdl[i]] == 3){
- listdl[num++] = listdl[i];
- }
- break;
- case 2:
- if(Math.abs(side[listdl[i]]) != 1){
- listdl[num++] = listdl[i];
- }
- break;
- case 3:
- if(Math.abs(side[listdl[i]]) == 1){
- listdl[num++] = listdl[i];
- }
- break;
- default:
- break;
-
-
- }
- }
- numDraw = num;
-
- }
- } // applyCuts() --------------------------------------------------------
-
-
- /**
- * Returns the name of the parameter group.
- *
- * @return String parameter group
- */
- public String getParameterGroup()
- {
- return "LAr";
- }
-
- /**
- * Returns the name of the datatype.
- *
- * @return String datatype
- */
- public String getName()
- {
- return "LAr";
- }
-
- /**
- * Returns the name of the datatype.
- *
- * @return String datatype
- */
- public String getNameScreenName()
- {
- return "LAr";
- }
-
- /**
- * Returns the type of calorimeter (ECAL/HCAL) for a hit.
- *
- * @param index int hit index
- * @return String calorimeter type
- */
- public String getCalorimeterType(int index)
- {
- return "ECAL";
- }
-
- /**
- * Returns the histograms for this projection.
- *
- * @param projection AProjection2D current projection
- * @return ACoord[] polygons representing histograms
- */
- protected ACoord[] getUserHistograms(AProjection2D projection)
- {
- ACoord[] data = ACoord.NO_HISTOGRAMS;
- int mode = parameterStore.get("YX", "Mode").getI();
- if ((projection instanceof AProjectionYX) && (mode == AProjectionYX.MODE_STANDARD ||
- mode == AProjectionYX.MODE_LAR_ENDCAP_PRESAMPLER ||
- mode == AProjectionYX.MODE_LAR_ENDCAP_1 ||
- mode == AProjectionYX.MODE_LAR_ENDCAP_2 ||
- mode == AProjectionYX.MODE_LAR_ENDCAP_3 ||
- mode == AProjectionYX.MODE_LAR_ENDCAP_SUMMED))
- data = getYXHistograms();
- else if (projection instanceof AProjectionFR)
- data = getFRHistograms();
- else if (projection instanceof AProjectionRZ)
- data = getRZHistograms();
- else if (projection instanceof AProjectionFZ)
- data = getFZHistograms();
- return projection.nonLinearTransform(data);
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/data/ALVL1JetElementData.java b/graphics/AtlantisJava/src/atlantis/data/ALVL1JetElementData.java
deleted file mode 100644
index a4aa50b1eaa..00000000000
--- a/graphics/AtlantisJava/src/atlantis/data/ALVL1JetElementData.java
+++ /dev/null
@@ -1,446 +0,0 @@
-package atlantis.data;
-
-import atlantis.event.*;
-import java.awt.Color;
-
-import atlantis.canvas.AWindow;
-import atlantis.globals.AGlobals;
-import atlantis.graphics.ACoord;
-import atlantis.graphics.ADrawParameters;
-import atlantis.graphics.AGraphics;
-import atlantis.graphics.colormap.AColorMap;
-import atlantis.projection.AProjection2D;
-import atlantis.projection.AProjectionVP;
-import atlantis.utils.AHashMap;
-import atlantis.utils.AMath;
-import atlantis.utils.APolygon;
-
-public class ALVL1JetElementData extends AData
-{
- private float[] energy;
- private float[] eta;
- private float[] deta;
- private float[] phi;
- private float[] dphi;
-
- ALVL1JetElementData(AHashMap p, AEvent e)
- {
- super(p,e);
-
- phi = p.getFloatArray("phi");
- eta = p.getFloatArray("eta");
- // here energy is actually Et
- energy = p.getFloatArray("energy");
-
- deta = new float[numData];
- dphi = new float[numData];
-
- fillGranularity();
- }
-
- private void fillGranularity()
- {
- for(int i = 0; i < numData; ++i)
- {
- float positiveEta = Math.abs(eta[i]);
- if(positiveEta <= 2.4)
- {
- deta[i] = 0.1f;
- dphi[i] = (float) (Math.PI / 32.);
- }
- else if(positiveEta <= 2.7)
- {
- deta[i] = 0.15f;
- dphi[i] = (float) (Math.PI / 32.);
- }
- else if(positiveEta <= 2.9)
- {
- deta[i] = 0.1f;
- dphi[i] = (float) (Math.PI / 32.);
- }
- else if(positiveEta <= 3.2)
- {
- deta[i] = 0.15f;
- dphi[i] = (float) (Math.PI / 32.);
- }
- else
- {
- deta[i] = 0.9f;
- dphi[i] = (float) (Math.PI / 16.);
- }
- }
- }
-
- public double getEta(int index)
- {
- return eta[index];
- }
-
- public double getdEta(int index)
- {
- return deta[index];
- }
-
- public double getPhi(int index)
- {
- return phi[index];
- }
-
- public double getdPhi(int index)
- {
- return dphi[index];
- }
-
- public double getET(int index)
- {
- return energy[index];
- }
-
- public String getNameScreenName()
- {
- return "LVL1JetElement";
- }
-
- public String getParameterGroup()
- {
- return "LVL1JetElement";
- }
-
- public String getHitInfo(int index)
- {
- int simpleOutput = AGlobals.instance().getSimpleOutput();
- if(simpleOutput>0) return getNameScreenName()+" index: " + index+
- "\n E="+String.format("%.3f",energy[index])+" GeV\n "+
- AMath.ETA+" = "+String.format("%.3f",eta[index])+"\n "+
- AMath.PHI+" = "+String.format("%.3f",Math.toDegrees(phi[index]))+AMath.DEGREES;
-
- StringBuffer msg = new StringBuffer(getNameScreenName());
- msg.append(" (id: " + id[index] + " index: " + index + ")");
- msg.append("\n Energy = ");
- msg.append(String.format("%.3f",energy[index]));
- msg.append(" GeV\n ");
- msg.append(AMath.ETA);
- msg.append(" = ");
- msg.append(String.format("%.3f",eta[index]));
- msg.append("\n ");
- msg.append(AMath.PHI);
- msg.append(" = ");
- msg.append(String.format("%.3f",phi[index]));
- msg.append(AMath.DEGREES);
- msg.append(" (" + String.format("%.3f",phi[index]) + " rad)");
-
- return msg.toString();
- }
-
- protected void applyCuts()
- {
- cutIndex();
- cut("CutsCalo", "LVL1TriggerET", " ET", energy);
- cutPhi(phi, dphi);
- cutEtaDEta(eta, deta);
- }
-
- protected int internalColor()
- {
- int colorFunction = parameterStore.get(PARAMETER_GROUP, "ColorFunction").getI();
-
- if(colorFunction == 0)
- colorByConstant();
-
- return 1;
- }
-
- protected int getDrawOrFill()
- {
- return AGraphics.FILL;
- }
-
- protected ACoord getYXUser()
- {
- makeDrawList();
-
- double[][][] hv = new double[2][numDraw][4];
- int[] index = new int[numDraw];
-
- for(int i=0; i<numDraw; i++)
- {
- int list = listdl[i];
- double phiPlus = phi[list] + dphi[list];
- double phiMinus = phi[list] - dphi[list];
- double cosPlus = Math.cos(phiPlus);
- double sinPlus = Math.sin(phiPlus);
- double cosMinus = Math.cos(phiMinus);
- double sinMinus = Math.sin(phiMinus);
-
- // Rho range of Calo Detector is about between [148.175, 386]
- double rhoMax = 380;
- double rhoMinus = 155;
-
- double maxEnergy = parameterStore.get("Projection", "EnergyMax").getD();
- double rhoPlus = rhoMax;
- if(Math.abs(energy[list]) < maxEnergy)
- rhoPlus = rhoMinus + (rhoMax - rhoMinus) * Math.abs(energy[list]) / maxEnergy;
-
- // 4 corners of the cell area
- // x0, y0
- hv[0][i][0] = rhoMinus * cosPlus;
- hv[1][i][0] = rhoMinus * sinPlus;
- // x1, y1
- hv[0][i][1] = rhoPlus * cosPlus;
- hv[1][i][1] = rhoPlus * sinPlus;
- // x2, y2
- hv[0][i][2] = rhoPlus * cosMinus;
- hv[1][i][2] = rhoPlus * sinMinus;
- // x3, y3
- hv[0][i][3] = rhoMinus * cosMinus;
- hv[1][i][3] = rhoMinus * sinMinus;
-
- index[i] = list;
- }
- return new ACoord(hv, index, this, ACoord.POLYGONS);
- }
-
- protected ACoord getFRUser()
- {
- ACoord coordFR = getYXUser().convertYXToFR().includePhiWrapAround("FR");
- return coordFR;
- }
-
- protected ACoord getRZUser()
- {
- makeDrawList();
- double[][][] hv = new double[2][numDraw][4];
- int[] index = new int[numDraw];
-
- for(int i=0; i<numDraw; i++)
- {
- int list = listdl[i];
- double phiMid = Math.toRadians(parameterStore.get("RZ", "Phi").getD());
- double phiDiff = Math.abs(phi[list]-phiMid);
- double rSign;
- if (phiDiff > Math.PI/2. && phiDiff <= 3*Math.PI/2.)
- rSign = -1;
- else
- rSign = 1;
-
- // calculate theta based on the eta value
- double theta = Math.atan(Math.exp(-Math.abs(eta[list]))) * 2.0;
- double thetaPlus = Math.atan(Math.exp(-(Math.abs(eta[list]) - deta[list]))) * 2.0;
- double thetaMinus = Math.atan(Math.exp(-(Math.abs(eta[list]) + deta[list]))) * 2.0;
-
- if ((eta[list] > 0.) && (rSign == -1))
- {
- theta = 2 * Math.PI - theta;
- thetaPlus = 2 * Math.PI - thetaPlus;
- thetaMinus = 2 * Math.PI - thetaMinus;
- }
- else if ((eta[list] < 0.) && (rSign == -1))
- {
- theta += Math.PI;
- thetaPlus += Math.PI;
- thetaMinus += Math.PI;
- }
- else if ((eta[list] < 0.) && (rSign == 1))
- {
- theta = Math.PI - theta;
- thetaPlus = Math.PI - thetaPlus;
- thetaMinus = Math.PI - thetaMinus;
- }
-
- double cosPlus = Math.cos(thetaPlus);
- double sinPlus = Math.sin(thetaPlus);
- double cosMinus = Math.cos(thetaMinus);
- double sinMinus = Math.sin(thetaMinus);
-
- // decide the region based on the theta value
- final byte LAR = 0;
- final byte LAR_ENDCAP = 1;
- final byte FCAL_EM = 2;
- byte region = LAR;
- // hard-coded value is based on the values in AGeometry.xml
- if(Math.abs(Math.tan(theta)) >= 0.0778 && Math.abs(Math.tan(theta)) < 0.4828)
- region = LAR_ENDCAP;
- else if(Math.abs(Math.tan(theta)) < 0.0778)
- region = FCAL_EM;
-
- double radiusMinus = 0.;
- switch(region)
- {
- // use fixed rho/z to determine the lower radius value
- case LAR:
- radiusMinus = 155 / Math.abs(Math.sin(theta));
- break;
- case LAR_ENDCAP:
- radiusMinus = 380 / Math.abs(Math.cos(theta));
- break;
- case FCAL_EM:
- radiusMinus = 470 / Math.abs(Math.cos(theta));
- break;
- }
- double radiusMax = radiusMinus + 200;
- double maxEnergy = parameterStore.get("Projection", "EnergyMax").getD();
- double radiusPlus = radiusMax;
- if(Math.abs(energy[list]) < maxEnergy)
- radiusPlus = radiusMinus + (radiusMax - radiusMinus) * Math.abs(energy[list]) / maxEnergy;
-
- // 4 corners of the cell area
- // x0, y0
- hv[0][i][0] = radiusMinus * cosPlus;
- hv[1][i][0] = radiusMinus * sinPlus;
- // x1, y1
- hv[0][i][1] = radiusPlus * cosPlus;
- hv[1][i][1] = radiusPlus * sinPlus;
- // x2, y2
- hv[0][i][2] = radiusPlus * cosMinus;
- hv[1][i][2] = radiusPlus * sinMinus;
- // x3, y3
- hv[0][i][3] = radiusMinus * cosMinus;
- hv[1][i][3] = radiusMinus * sinMinus;
-
- index[i] = list;
- }
- return new ACoord(hv, index, this, ACoord.POLYGONS);
- }
-
- protected ACoord getVPUser()
- {
- makeDrawList();
- double[] h = new double[numDraw];
- double[] v = new double[numDraw];
- int[] index=new int[numDraw];
-
- for(int i=0; i<numDraw; i++)
- {
- int list=listdl[i];
- h[i]=eta[list];
- v[i]=Math.toDegrees(phi[list]);
- index[i]=list;
- }
- return new ACoord(h, v, index, this).includePhiWrapAround("VP");
- }
-
- public void draw(AWindow window, AGraphics ag, AProjection2D projection)
- {
- if(projection instanceof AProjectionVP)
- {
- ACoord centers=getUser(projection);
-
- int[] drawlist=centers.index;
- double[] density = new double[drawlist.length];
- double maxDensity = 0.0;
- double[][][] hv=new double[2][drawlist.length][4]; // cell
- int[] index = new int[drawlist.length];
- ACoord geoCell;
-
- for(int i=0; i<drawlist.length; ++i)
- {
- int list=drawlist[i];
- // y coordinate of four cell corners
- hv[1][i][0] = centers.hv[1][0][i] + Math.toDegrees(getdPhi(list));
- hv[1][i][1] = centers.hv[1][0][i] - Math.toDegrees(getdPhi(list));
- hv[1][i][2] = centers.hv[1][0][i] - Math.toDegrees(getdPhi(list));
- hv[1][i][3] = centers.hv[1][0][i] + Math.toDegrees(getdPhi(list));
- // x coordinate of four cell corners
- hv[0][i][0] = centers.hv[0][0][i] - getdEta(list);
- hv[0][i][1] = centers.hv[0][0][i] - getdEta(list);
- hv[0][i][2] = centers.hv[0][0][i] + getdEta(list);
- hv[0][i][3] = centers.hv[0][0][i] + getdEta(list);
-
- index[i] = list;
-
- // calculate density for all cells, and find min and max density
- density[i] = Math.abs(energy[list]) / (getdPhi(list) * getdEta(list));
- if(i == 0)
- maxDensity = density[i];
- else
- {
- if (density[i] > maxDensity)
- maxDensity = density[i];
- }
- }
-
- geoCell = window.calculateDisplay(new ACoord(hv, index, this, ACoord.POLYGONS));
- drawGeometry(geoCell, window, ag);
- for (int i = 0; i < density.length; i++)
- {
- double factor = Math.sqrt(density[i] / maxDensity);
- APolygon.scale(geoCell.hv[0][i], geoCell.hv[1][i], factor);
- }
-
- drawHits(geoCell, window, ag);
- }
- else
- {
- super.draw(window, ag, projection);
- }
- }
-
- private void drawGeometry(ACoord display, AWindow window, AGraphics ag)
- {
- Color[] colorMap = AColorMap.getColors();
- boolean drawCellGeometry = parameterStore.get(getParameterGroup(), "CellGeometry").getStatus();
- boolean drawCellOutline = parameterStore.get(getParameterGroup(), "CellOutline").getStatus();
- int cellGeometryColor = parameterStore.get(getParameterGroup(), "CellGeometry").getI();
- int cellOutlineColor = parameterStore.get(getParameterGroup(), "CellOutline").getI();
- boolean drawFrame = parameterStore.get(getParameterGroup(), "Frame").getStatus();
- int frameColor = parameterStore.get(getParameterGroup(), "Frame").getI();
- int frameWidth = parameterStore.get(getParameterGroup(), "FrameWidth").getI();
- //only draw frames for Grey/BW color maps if is selected to draw frames
- if(drawFrame && AColorMap.drawFrames())
- drawFrame=true;
- else
- drawFrame=false;
-
- if(!drawCellGeometry && !drawCellOutline)
- return;
-
- // Draw geometry
- for(int i=0; i<display.hv[0].length; ++i)
- {
- if(drawCellGeometry)
- {
- if(drawFrame)
- {
- ag.updateDrawParameters(new ADrawParameters(true, frameColor, 1, 0, frameWidth, 0));
- ag.drawPolygon(display.hv[0][i], display.hv[1][i], display.hv[0][i].length);
- }
- ag.updateDrawParameters(new ADrawParameters(true, cellGeometryColor, 1, 0, 0, 0));
- ag.fillPolygon(display.hv[0][i], display.hv[1][i], display.hv[0][i].length);
- }
- if(drawCellOutline)
- {
- ag.setColor(colorMap[cellOutlineColor]);
- ag.drawPolygon(display.hv[0][i], display.hv[1][i], display.hv[0][i].length);
- }
- }
- }
-
- private void drawHits(ACoord display, AWindow window, AGraphics ag)
- {
- int[] color = this.getColor(display.index);
-
- boolean drawCellGeometry = parameterStore.get(getParameterGroup(), "CellGeometry").getStatus();
- boolean drawFrame = parameterStore.get(getParameterGroup(), "Frame").getStatus();
- int frameColor = parameterStore.get(getParameterGroup(), "Frame").getI();
- int frameWidth = parameterStore.get(getParameterGroup(), "FrameWidth").getI();
-
- // draw frame
- if (drawFrame && !drawCellGeometry)
- {
- for (int i = 0; i < display.hv[0].length; i++)
- {
- ag.updateDrawParameters(new ADrawParameters(true, frameColor, 1, 0, frameWidth, 0));
- ag.drawPolygon(display.hv[0][i], display.hv[1][i], display.hv[0][i].length);
- }
- }
-
- // draw hits
- for(int i=0; i<display.hv[0].length; ++i)
- {
- int lineWidth = parameterStore.get(getParameterGroup(), "LineWidth").getI();
- ag.updateDrawParameters(new ADrawParameters(true, color[i], 1, lineWidth, 0, 0));
- ag.fillPolygon(display.hv[0][i], display.hv[1][i], display.hv[0][i].length);
- }
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/data/ALVL1ResultData.java b/graphics/AtlantisJava/src/atlantis/data/ALVL1ResultData.java
deleted file mode 100755
index db7dc97e2b1..00000000000
--- a/graphics/AtlantisJava/src/atlantis/data/ALVL1ResultData.java
+++ /dev/null
@@ -1,292 +0,0 @@
-package atlantis.data;
-
-import atlantis.event.AData;
-import atlantis.event.*;
-import atlantis.utils.AHashMap;
-
-public class ALVL1ResultData extends AData
-{
- private String[] ctpItemList;
- private String[] itemListL2;
- private String[] itemListEF;
- private int[] ctpWord0;
- private int[] ctpWord1;
- private int[] ctpWord2;
- private float[] energyEtMiss;
- //private float[] energyEx;
- //private float[] energyEy;
- private float[] energySumEt;
- private int[] passedL1;
- private int[] passedL2;
- private int[] passedEF;
- private int[] passedTrigger;
- private String[] prescaleListEF;
- private String[] prescaleListL1;
- private String[] prescaleListL2;
-
- ALVL1ResultData(AHashMap p, AEvent e)
- {
- super(p,e);
-
- ctpItemList = p.getStringArray("ctpItemList");
- itemListL2 = p.getStringArray("itemListL2");
- itemListEF = p.getStringArray("itemListEF");
- ctpWord0 = p.getUnknownIntArray("ctpWord0");
- ctpWord1 = p.getUnknownIntArray("ctpWord1");
- ctpWord2 = p.getUnknownIntArray("ctpWord2");
- energyEtMiss = p.getUnknownFloatArray("energyEtMiss");
- //energyEx = p.getUnknownFloatArray("energyEx");
- //energyEy = p.getUnknownFloatArray("energyEy");
- energySumEt = p.getUnknownFloatArray("energySumEt");
- passedL1 = p.getUnknownIntArray("passedL1");
- passedL2 = p.getUnknownIntArray("passedL2");
- passedEF = p.getUnknownIntArray("passedEF");
- passedTrigger = p.getUnknownIntArray("passedTrigger");
- //check for backward compatibility
- prescaleListEF = (p.get("prescaleListEF") != null) ? p.getStringArray("prescaleListEF"): null;
- prescaleListL1 = (p.get("prescaleListL1") != null) ? p.getStringArray("prescaleListL1"): null;
- prescaleListL2 = (p.get("prescaleListL2") != null) ? p.getStringArray("prescaleListL2"): null;
- }
-
- protected void applyCuts()
- {}
-
- public String getHitInfo(int index)
- {
- return "LVL1Result";
- }
-
- protected int internalColor()
- {
- int colorFunction = parameterStore.get(PARAMETER_GROUP, "ColorFunction").getI();
-
- if(colorFunction == 0)
- colorByConstant();
-
- return 3;
- }
-
- public String getParameterGroup()
- {
- return "LVL1Result";
- }
-
- public String getNameScreenName()
- {
- return "LVL1Result";
- }
-
- public String getCtpItemList(int index)
- {
- return ctpItemList[index];
- }
-
- /**
- * Returns the individual parts of the list seperated by -
- * By using cleanup removes L1 from the item
- */
- public String[] getCtpItemListSplit(int index, boolean cleanUp)
- {
- if(ctpItemList!=null)
- {
- if(cleanUp)
- return splitItems(ctpItemList[index], "L1");
- else
- return splitItems(ctpItemList[index]);
- }
- else
- return null;
- }
-
- public String getitemListL2(int index)
- {
- return itemListL2[index];
- }
-
- /**
- * Returns the individual parts of the list seperated by -
- * By using cleanup removes L2 from the item
- */
- public String[] getitemListL2Split(int index, boolean cleanUp)
- {
- if(itemListL2!=null)
- {
- if(cleanUp)
- return splitItems(itemListL2[index], "L2");
- else
- return splitItems(itemListL2[index]);
- }
- else
- return null;
- }
-
- public String getitemListEF(int index)
- {
- return itemListEF[index];
- }
-
- /**
- * Returns the individual parts of the list seperated by -
- * By using cleanup removes EF from the item
- */
- public String[] getitemListEFSplit(int index, boolean cleanUp)
- {
- if(itemListEF!=null)
- {
- if(cleanUp)
- return splitItems(itemListEF[index], "EF");
- else
- return splitItems(itemListEF[index]);
- }
- else
- return null;
- }
-
- public int getCtpWord0(int index)
- {
- return ctpWord0[index];
- }
-
- public String getBinaryCtpWord0(int index)
- {
- return Integer.toBinaryString(ctpWord0[index]);
- }
-
- public int getCtpWord1(int index)
- {
- return ctpWord1[index];
- }
-
- public int getCtpWord2(int index)
- {
- return ctpWord2[index];
- }
-
- /**
- * This method is needed for backward compatibility
- * New xml files store this in ATriggerInfoData
- */
- public float getEnergyEtMiss(int index)
- {
- return energyEtMiss[index];
- }
-
- /*public float getEnergyEx(int index)
- {
- return energyEx[index];
- }
- public float getEnergyEy(int index)
- {
- return energyEy[index];
- }*/
-
- /**
- * This method is needed for backward compatibility
- * New xml files store this in ATriggerInfoData
- */
- public float getEnergySumEt(int index)
- {
- return energySumEt[index];
- }
-
- public int getPassedL1(int index)
- {
- return passedL1[index];
- }
-
- public int getPassedL2(int index)
- {
- return passedL2[index];
- }
-
- public int getPassedEF(int index)
- {
- return passedEF[index];
- }
-
- public int getPassedTrigger(int index)
- {
- return passedTrigger[index];
- }
-
- public String getPrescaleListEF(int index)
- {
- return prescaleListEF[index];
- }
-
- /**
- * Returns the individual parts of the list seperated by -
- */
- public String[] getPrescaleListEFSplit(int index)
- {
- if(prescaleListEF!=null)
- return splitItems(prescaleListEF[index]);
- else
- return null;
- }
-
- public String getPrescaleListL1(int index)
- {
- return prescaleListL1[index];
- }
-
- /**
- * Returns the individual parts of the list seperated by -
- */
- public String[] getPrescaleListL1Split(int index)
- {
- if(prescaleListL1!=null)
- return splitItems(prescaleListL1[index]);
- else
- return null;
- }
-
- public String getPrescaleListL2(int index)
- {
- return prescaleListL2[index];
- }
-
- /**
- * Returns the individual parts of the list seperated by -
- */
- public String[] getPrescaleListL2Split(int index)
- {
- if(prescaleListL2!=null)
- return splitItems(prescaleListL2[index]);
- else
- return null;
- }
-
- /**
- * Function that seperates an item list and carries out cleanup
- */
- private String[] splitItems(String origItems, String level)
- {
- //string array to hold individual items
- String[] newItems=splitItems(origItems);
- //remove letters from start of item and duplicated names
- char[] levelChar = level.toCharArray();
- for(int i=0; i<newItems.length; i++)
- {
- char[] newItemsChar = newItems[i].toCharArray();
- if(newItemsChar[0]==levelChar[0] && newItemsChar[1]==levelChar[1])
- {
- if(newItemsChar[2]=='_')
- newItems[i]=newItems[i].substring(3);
- else
- newItems[i]=newItems[i].substring(2);
- //get rid of duplicated parts of name
- char[] newItemsChar2 = newItems[i].toCharArray();
- for(int j=0; j<newItemsChar2.length-1; j++)
- {
- if(newItemsChar2[j]==levelChar[0] && newItemsChar2[j+1]==levelChar[1])
- {
- newItems[i]=newItems[i].substring(0, j);
- break;
- }
- }
- }
- }
- return newItems;
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/data/ALVL1TriggerTowerData.java b/graphics/AtlantisJava/src/atlantis/data/ALVL1TriggerTowerData.java
deleted file mode 100644
index 9cfef101342..00000000000
--- a/graphics/AtlantisJava/src/atlantis/data/ALVL1TriggerTowerData.java
+++ /dev/null
@@ -1,800 +0,0 @@
-package atlantis.data;
-
-import java.util.Arrays;
-
-import atlantis.canvas.AWindow;
-import atlantis.event.AData;
-import atlantis.event.AEvent;
-import atlantis.globals.AGlobals;
-import atlantis.graphics.ACoord;
-import atlantis.graphics.ADrawParameters;
-import atlantis.graphics.AGraphics;
-import atlantis.graphics.colormap.AColorMap;
-import atlantis.list.AListManager;
-import atlantis.projection.AProjection2D;
-import atlantis.projection.AProjectionFR;
-import atlantis.projection.AProjectionRZ;
-import atlantis.projection.AProjectionVP;
-import atlantis.projection.AProjectionYX;
-import atlantis.utils.AHashMap;
-import atlantis.utils.AMath;
-import atlantis.utils.APolygon;
-
-public class ALVL1TriggerTowerData extends AData
-{
- public static final boolean ELECTROMAGNETIC = true;
- public static final boolean HADRONIC = false;
-
- // here energy is actually Et
- private float[] emEnergy;
- private float[] hadEnergy;
- private float[] sumEnergy;
- private float[] eta;
- private float[] deta_em;
- private float[] deta_had;
- private float[] phi;
- private float[] dphi_em;
- private float[] dphi_had;
- private int[] numADC;
- private int[][] hadADC;
- private int[][] emADC;
- private int[] emBCID;
- private int[] hadBCID;
- private int[] isEMSaturated;
- private int[] isHadSaturated;
-
- ALVL1TriggerTowerData(AHashMap p, AEvent e)
- {
- super(p,e);
-
- phi = p.getFloatArray("phi");
- eta = p.getFloatArray("eta");
- emEnergy = p.getFloatArray("emEnergy");
- hadEnergy = p.getFloatArray("hadEnergy");
- sumEnergy = p.getFloatArray("sumEnergy");
-
- deta_em = new float[numData];
- deta_had = new float[numData];
- dphi_em = new float[numData];
- dphi_had = new float[numData];
-
- fillGranularity();
-
- numADC = p.getIntArray("numADC");
- emADC = fillADC(p.getIntArray("emADC"));
- hadADC = fillADC(p.getIntArray("hadADC"));
- emBCID = p.getIntArray("emBCID");
- hadBCID = p.getIntArray("hadBCID");
- isEMSaturated = p.getIntArray("isEMSaturated");
- isHadSaturated = p.getIntArray("isHadSaturated");
- }
-
- private void fillGranularity()
- {
- for(int i = 0; i < numData; ++i)
- {
- float positiveEta = Math.abs(eta[i]);
- if(positiveEta <= 2.4)
- {
- deta_em[i] = 0.05f;
- dphi_em[i] = (float) (Math.PI / 64.);
- deta_had[i] = 0.05f;
- dphi_had[i] = (float) (Math.PI / 64.);
- }
- else if(positiveEta <= 2.5)
- {
- deta_em[i] = 0.05f;
- dphi_em[i] = (float) (Math.PI / 64.);
- deta_had[i] = 0.1f;
- dphi_had[i] = (float) (Math.PI / 32.);
- }
- else if(positiveEta <= 3.0)
- {
- deta_em[i] = 0.1f;
- dphi_em[i] = (float) (Math.PI / 32.);
- deta_had[i] = 0.1f;
- dphi_had[i] = (float) (Math.PI / 32.);
- }
- else if(positiveEta <= 3.1)
- {
- deta_em[i] = 0.1f;
- dphi_em[i] = (float) (Math.PI / 32.);
- deta_had[i] = 0.05f;
- dphi_had[i] = (float) (Math.PI / 32.);
- }
- else if(positiveEta <= 3.2)
- {
- deta_em[i] = 0.05f;
- dphi_em[i] = (float) (Math.PI / 32.);
- deta_had[i] = 0.2f;
- dphi_had[i] = (float) (Math.PI / 16.);
- }
- else if(positiveEta <= 4.3)
- {
- deta_em[i] = 0.2f;
- dphi_em[i] = (float) (Math.PI / 16.);
- deta_had[i] = 0.2f;
- dphi_had[i] = (float) (Math.PI / 16.);
- }
- else if(positiveEta <= 4.4)
- {
- deta_em[i] = 0.2f;
- dphi_em[i] = (float) (Math.PI / 16.);
- deta_had[i] = 0.35f;
- dphi_had[i] = (float) (Math.PI / 16.);
- }
- else
- {
- deta_em[i] = 0.3f;
- dphi_em[i] = (float) (Math.PI / 16.);
- deta_had[i] = 0.35f;
- dphi_had[i] = (float) (Math.PI / 16.);
- }
- }
- }
-
- public int[][] fillADC(int[] tempADC)
- {
- int[][] ADC=null;
- if(tempADC!=null)
- {
- ADC= new int[numADC.length][0];
- int num=0;
- for(int i=0; i<numADC.length; i++)
- {
- // multiple numbers are associated with each cell
- ADC[i]=new int[numADC[i]];
- for(int j=0; j<numADC[i]; j++)
- {
- ADC[i][j]=tempADC[num]; // fill in array for each cell
- num++;
- }
- }
- } // if(ADC != null)
- return ADC;
- }
-
- public void plotPulseShapes(int index)
- {
- if(emADC!=null && hadADC!=null)
- {
- //int[][] data={hadADC[index],emADC[index]};
- String[] labels={"EM trigger ADC counts","HAD trigger ADC counts","Sum trigger ADC counts"};
- int[] sumADC= new int[emADC[index].length];
- String[] axis= new String[3];
- String[] colors = new String[3];
- //EM plot
- if(isEMSaturated[index]==0)
- colors[0]="blue";
- else
- colors[0]="red";
- axis[0]="index (BCID="+emBCID[index]+")";
- //HAD plot
- if(isHadSaturated[index]==0)
- colors[1]="blue";
- else
- colors[0]="red";
- axis[1]="index (BCID="+hadBCID[index]+")";
- //Sum plot
- colors[2]="blue";
- axis[2]="index";
- for(int i=0; i<emADC[index].length; i++)
- {
- sumADC[i]=emADC[index][i]+hadADC[index][i];
- }
- int[][] data={emADC[index],hadADC[index],sumADC};
- String title="LVL1TriggerTower " + id[index] + " ADC counts";
- APulseShapePlot.plotADCCounts(data, title, axis, labels, colors);
- }
- else
- {
- if(emADC!=null)
- {
- int[][] data={emADC[index]};
- String[] axis={"index"};
- APulseShapePlot.plotADCCounts(data, "EM trigger ADC counts", axis);
- }
- if(hadADC!=null)
- {
- int[][] data={hadADC[index]};
- String[] axis={"index"};
- APulseShapePlot.plotADCCounts(data, "HAD trigger ADC counts", axis);
- }
- }
- }
-
- public double getEta(int index)
- {
- return eta[index];
- }
-
- public double getdEta(int index, boolean emOrHad)
- {
- if(emOrHad == ELECTROMAGNETIC)
- return deta_em[index];
- else
- return deta_had[index];
- }
-
- public double getPhi(int index)
- {
- return phi[index];
- }
-
- public double getdPhi(int index, boolean emOrHad)
- {
- if(emOrHad == ELECTROMAGNETIC)
- return dphi_em[index];
- else
- return dphi_had[index];
- }
-
- public double getET(int index, boolean emOrHad)
- {
- if(emOrHad == ELECTROMAGNETIC)
- return emEnergy[index];
- else
- return hadEnergy[index];
- }
-
- public double getSumET(int index)
- {
- return sumEnergy[index];
- }
-
- public String getNameScreenName()
- {
- return "LVL1TriggerTower";
- }
-
- public String getParameterGroup()
- {
- return "LVL1TriggerTower";
- }
-
- public String getHitInfo(int index)
- {
- int simpleOutput = AGlobals.instance().getSimpleOutput();
- if(simpleOutput>0) return getNameScreenName()+" index: " + index+
- "\n E="+String.format("%.3f",sumEnergy[index])+" GeV\n "+
- AMath.ETA+" = "+String.format("%.3f",eta[index])+"\n "+
- AMath.PHI+" = "+String.format("%.3f",Math.toDegrees(phi[index]))+AMath.DEGREES;
-
- StringBuffer msg = new StringBuffer(getNameScreenName());
- msg.append(" (id: " + id[index] + " index: " + index + ")");
- msg.append("\n EM Energy = ");
- msg.append(String.format("%.3f",emEnergy[index]));
- msg.append(" GeV\n Had Energy = ");
- msg.append(String.format("%.3f",hadEnergy[index]));
- msg.append(" GeV\n Sum Energy = ");
- msg.append(String.format("%.3f",sumEnergy[index]));
- msg.append(" GeV\n ");
- msg.append(AMath.ETA);
- msg.append(" = ");
- msg.append(String.format("%.3f",eta[index]));
- msg.append("\n ");
- msg.append(AMath.PHI);
- msg.append(" = ");
- msg.append(String.format("%.3f",Math.toDegrees(phi[index])));
- msg.append(AMath.DEGREES);
- msg.append(" (" + String.format("%.3f",phi[index]) + " rad)");
-
- return msg.toString();
- }
-
- protected void applyCuts()
- {
- cutIndex();
- cut("CutsCalo", "LVL1TriggerET", " ET", sumEnergy);
- }
-
- public void applyEMCuts()
- {
- cutPhi(phi, dphi_em);
- cutEtaDEta(eta, deta_em);
- }
-
- public void applyHadCuts()
- {
- cutPhi(phi, dphi_had);
- cutEtaDEta(eta, deta_had);
- }
-
- public byte[] getColor(boolean emOrHad)
- {
- internalColor(emOrHad);
- coloring();
- byte[] temp = new byte[id.length];
- for(int i = 0; i < temp.length; i++)
- temp[i] = color[getIndexFromId(id[i])];
- return temp;
- }
-
- /*
- * Returns the colours of the trigger tower cells
- * If this method is used then internalColor(boolean emOrHad)
- * must be called first elsewhere
- */
- public int[] getColor(int[] dl)
- {
- coloring();
- int[] temp = new int[dl.length];
-
- for(int i = 0; i < temp.length; i++)
- temp[i] = color[dl[i]];
- return temp;
- }
-
- /*
- * Colour the cells if in lists or picked
- * If this method is used then internalColor(boolean emOrHad)
- * must be called first elsewhere
- */
- public void coloring()
- {
- int[][] temp = AListManager.getInstance().getColorMapping(this);
- int[] index = temp[0];
- int[] c = temp[1];
- // now add in colours specified in lists
-
- for(int i = 0; i < index.length; ++i)
- if(c[i] >= 0)
- color[index[i]] = (byte) c[i];
- int others = AListManager.getInstance().getColorOfOthers();
- // need to check if this data could have been picked
- // so that colouring of hits by STr works even if STr
- // is not in list because it wasn't on....
- if(others >= 0 && parameterStore.get("Data", getName()).getStatus())
- {
- boolean[] inList = new boolean[numData];
- for(int i = 0; i < index.length; ++i)
- inList[index[i]] = true;
-
- for(int i = 0; i < numData; ++i)
- if(!inList[i])
- color[i] = (byte) others;
- }
- }
-
- protected int internalColor()
- {
- colorByConstant();
- return 1;
- }
-
- protected int internalColor(boolean emOrHad)
- {
- int colorFunction = parameterStore.get(PARAMETER_GROUP, "ColorFunction").getI();
- if(colorFunction == 0)
- colorByConstant();
- else if(colorFunction ==1)
- {
- if(emOrHad == ELECTROMAGNETIC)
- Arrays.fill(color, (byte) (parameterStore.get("Det", "ECALFill").getI() + 12));
- else
- Arrays.fill(color, (byte) (parameterStore.get("Det", "HCALFill").getI() + 12));
- }
- return 1;
- }
-
- protected int getDrawOrFill()
- {
- return AGraphics.FILL;
- }
-
- private void drawVP(AWindow window, AGraphics ag, boolean emOrHad)
- {
- ACoord centers = getVPUser(emOrHad);
-
- if(centers == null)
- return;
-
- int[] drawlist = centers.index;
- double[] density = new double[drawlist.length];
- double[] sumDensity = new double[drawlist.length];
- double maxDensity = 0.0;
- double[][][] hv = new double[2][drawlist.length][4]; // cell
- int[] index = new int[drawlist.length];
- ACoord geoCell;
-
- for(int i=0; i<drawlist.length; ++i)
- {
- int list = drawlist[i];
- // y coordinate of four cell corners
- hv[1][i][0] = centers.hv[1][0][i] + Math.toDegrees(getdPhi(list, emOrHad));
- hv[1][i][1] = centers.hv[1][0][i] - Math.toDegrees(getdPhi(list, emOrHad));
- hv[1][i][2] = centers.hv[1][0][i] - Math.toDegrees(getdPhi(list, emOrHad));
- hv[1][i][3] = centers.hv[1][0][i] + Math.toDegrees(getdPhi(list, emOrHad));
- // x coordinate of four cell corners
- hv[0][i][0] = centers.hv[0][0][i] - getdEta(list, emOrHad);
- hv[0][i][1] = centers.hv[0][0][i] - getdEta(list, emOrHad);
- hv[0][i][2] = centers.hv[0][0][i] + getdEta(list, emOrHad);
- hv[0][i][3] = centers.hv[0][0][i] + getdEta(list, emOrHad);
-
- index[i] = list;
-
- // calculate density for all cells, and find min and max density
- density[i] = Math.abs(getET(list, emOrHad)) / (getdPhi(list, emOrHad) * getdEta(list, emOrHad));
- sumDensity[i] = Math.abs(getSumET(list)) / (getdPhi(list, emOrHad) * getdEta(list, emOrHad));
- if(i == 0)
- maxDensity = sumDensity[i];
- else
- {
- if (sumDensity[i] > maxDensity)
- maxDensity = sumDensity[i];
- }
- }
-
- geoCell = window.calculateDisplay(new ACoord(hv, index, this, ACoord.POLYGONS));
- drawGeometry(geoCell, window, ag, density);
- for (int i = 0; i < density.length; i++)
- {
- double factor = Math.sqrt(density[i] / maxDensity);
- APolygon.scale(geoCell.hv[0][i], geoCell.hv[1][i], factor);
- }
-
- drawHits(geoCell, window, ag, density);
- }
-
- public void draw(AWindow window, AGraphics ag, AProjection2D projection)
- {
- int energyType = parameterStore.get(PARAMETER_GROUP, "EnergyType").getI();
- if(projection instanceof AProjectionYX)
- {
- if(energyType == 0 || energyType == 2)
- {
- internalColor(ELECTROMAGNETIC);
- ag.draw(window.calculateDisplay(projection.nonLinearTransform(getYXUser(ELECTROMAGNETIC))));
- }
- if(energyType == 1 || energyType == 2)
- {
- internalColor(HADRONIC);
- ag.draw(window.calculateDisplay(projection.nonLinearTransform(getYXUser(HADRONIC))));
- }
- }
- else if(projection instanceof AProjectionFR)
- {
- if(energyType == 0 || energyType == 2)
- {
- internalColor(ELECTROMAGNETIC);
- ag.draw(window.calculateDisplay(projection.nonLinearTransform(getFRUser(ELECTROMAGNETIC))));
- }
- if(energyType == 1 || energyType == 2)
- {
- internalColor(HADRONIC);
- ag.draw(window.calculateDisplay(projection.nonLinearTransform(getFRUser(HADRONIC))));
- }
- }
- else if(projection instanceof AProjectionRZ)
- {
- if(energyType == 0 || energyType == 2)
- {
- internalColor(ELECTROMAGNETIC);
- ag.draw(window.calculateDisplay(projection.nonLinearTransform(getRZUser(ELECTROMAGNETIC))));
- }
- if(energyType == 1 || energyType == 2)
- {
- internalColor(HADRONIC);
- ag.draw(window.calculateDisplay(projection.nonLinearTransform(getRZUser(HADRONIC))));
- }
- }
- else if(projection instanceof AProjectionVP)
- {
- if(energyType == 0 || energyType == 2)
- {
- internalColor(ELECTROMAGNETIC);
- drawVP(window, ag, ELECTROMAGNETIC);
- }
- if(energyType == 1 || energyType == 2)
- {
- internalColor(HADRONIC);
- drawVP(window, ag, HADRONIC);
- }
- }
- else
- {
- super.draw(window, ag, projection);
- }
- }
-
- private ACoord getYXUser(boolean emOrHad)
- {
- makeDrawList();
- if(emOrHad == ELECTROMAGNETIC)
- applyEMCuts();
- else
- applyHadCuts();
-
- double[][][] hv = new double[2][numDraw][4];
- int[] index = new int[numDraw];
-
- for(int i=0; i<numDraw; i++)
- {
- int list = listdl[i];
- double et = getET(list, emOrHad);
- if(et == 0.0)
- continue;
- double dphi = getdPhi(list, emOrHad);
- double phiPlus = phi[list] + dphi;
- double phiMinus = phi[list] - dphi;
- double cosPlus = Math.cos(phiPlus);
- double sinPlus = Math.sin(phiPlus);
- double cosMinus = Math.cos(phiMinus);
- double sinMinus = Math.sin(phiMinus);
-
- double rhoMax;
- double rhoMinus;
-
- if(emOrHad == ELECTROMAGNETIC)
- {
- // Rho range of LAr Detector (EM) is about between [148.175, 198.47]
- rhoMax = 195;
- rhoMinus = 155;
- }
- else
- {
- // Rho range of TILE Detector (Had) is about between [229, 386]
- rhoMax = 380;
- rhoMinus = 235;
- }
- double maxEnergy = parameterStore.get("Projection", "EnergyMax").getD();
- double rhoPlus = rhoMax;
- if(Math.abs(et) < maxEnergy)
- rhoPlus = rhoMinus + (rhoMax - rhoMinus) * Math.abs(et) / maxEnergy;
-
- // 4 corners of the cell area
- // x0, y0
- hv[0][i][0] = rhoMinus * cosPlus;
- hv[1][i][0] = rhoMinus * sinPlus;
- // x1, y1
- hv[0][i][1] = rhoPlus * cosPlus;
- hv[1][i][1] = rhoPlus * sinPlus;
- // x2, y2
- hv[0][i][2] = rhoPlus * cosMinus;
- hv[1][i][2] = rhoPlus * sinMinus;
- // x3, y3
- hv[0][i][3] = rhoMinus * cosMinus;
- hv[1][i][3] = rhoMinus * sinMinus;
-
- index[i] = list;
- }
- return new ACoord(hv, index, this, ACoord.POLYGONS);
- }
-
- protected ACoord getFRUser(boolean emOrHad)
- {
- ACoord coordFR = getYXUser(emOrHad).convertYXToFR().includePhiWrapAround("FR");
- return coordFR;
- }
-
- protected ACoord getRZUser(boolean emOrHad)
- {
- makeDrawList();
- if(emOrHad == ELECTROMAGNETIC)
- applyEMCuts();
- else
- applyHadCuts();
-
- double[][][] hv = new double[2][numDraw][4];
- int[] index = new int[numDraw];
-
- for(int i=0; i<numDraw; i++)
- {
- int list = listdl[i];
- double et = getET(list, emOrHad);
- if(et == 0.0)
- continue;
-
- double phiMid = Math.toRadians(parameterStore.get("RZ", "Phi").getD());
- double phiDiff = Math.abs(phi[list]-phiMid);
- double rSign;
- if (phiDiff > Math.PI/2. && phiDiff <= 3*Math.PI/2.)
- rSign = -1;
- else
- rSign = 1;
-
- // calculate theta based on the eta value
- double theta = Math.atan(Math.exp(-Math.abs(eta[list]))) * 2.0;
- double deta = getdEta(list, emOrHad);
- double thetaPlus = Math.atan(Math.exp(-(Math.abs(eta[list]) - deta))) * 2.0;
- double thetaMinus = Math.atan(Math.exp(-(Math.abs(eta[list]) + deta))) * 2.0;
-
- if ((eta[list] > 0.) && (rSign == -1))
- {
- theta = 2 * Math.PI - theta;
- thetaPlus = 2 * Math.PI - thetaPlus;
- thetaMinus = 2 * Math.PI - thetaMinus;
- }
- else if ((eta[list] < 0.) && (rSign == -1))
- {
- theta += Math.PI;
- thetaPlus += Math.PI;
- thetaMinus += Math.PI;
- }
- else if ((eta[list] < 0.) && (rSign == 1))
- {
- theta = Math.PI - theta;
- thetaPlus = Math.PI - thetaPlus;
- thetaMinus = Math.PI - thetaMinus;
- }
-
- double cosPlus = Math.cos(thetaPlus);
- double sinPlus = Math.sin(thetaPlus);
- double cosMinus = Math.cos(thetaMinus);
- double sinMinus = Math.sin(thetaMinus);
-
- // decide the region based on the theta value
- final byte LAR = 0;
- final byte LAR_ENDCAP = 1;
- final byte FCAL_EM = 2;
- byte region = LAR;
- // hard-coded value is based on the values in AGeometry.xml
- if(Math.abs(Math.tan(theta)) >= 0.0778 && Math.abs(Math.tan(theta)) < 0.4828)
- region = LAR_ENDCAP;
- else if(Math.abs(Math.tan(theta)) < 0.0778)
- region = FCAL_EM;
-
- double radiusMinus = 0.;
- double radiusMax = 0.;
- switch(region)
- {
- // use fixed rho/z to determine the lower radius value
- case LAR:
- if(emOrHad == ELECTROMAGNETIC)
- {
- radiusMax = 195 / Math.abs(Math.sin(theta));
- radiusMinus = 155 / Math.abs(Math.sin(theta));
- }
- else
- {
- radiusMax = 380 / Math.abs(Math.sin(theta));
- radiusMinus = 235 / Math.abs(Math.sin(theta));
- }
- break;
- case LAR_ENDCAP:
- if(emOrHad == ELECTROMAGNETIC)
- {
- radiusMax = 420 / Math.abs(Math.cos(theta));
- radiusMinus = 380 / Math.abs(Math.cos(theta));
- }
- else
- {
- radiusMax = 585 / Math.abs(Math.cos(theta));
- radiusMinus = 440 / Math.abs(Math.cos(theta));
- }
- break;
- case FCAL_EM:
- if(emOrHad == ELECTROMAGNETIC)
- {
- radiusMax = 510 / Math.abs(Math.cos(theta));
- radiusMinus = 470 / Math.abs(Math.cos(theta));
- }
- else
- {
- radiusMax = 600 / Math.abs(Math.cos(theta));
- radiusMinus = 520 / Math.abs(Math.cos(theta));
- }
- break;
- }
-
- double maxEnergy = parameterStore.get("Projection", "EnergyMax").getD();
- double radiusPlus = radiusMax;
- if(Math.abs(et) < maxEnergy)
- radiusPlus = radiusMinus + (radiusMax - radiusMinus) * Math.abs(et) / maxEnergy;
-
- // 4 corners of the cell area
- // x0, y0
- hv[0][i][0] = radiusMinus * cosPlus;
- hv[1][i][0] = radiusMinus * sinPlus;
- // x1, y1
- hv[0][i][1] = radiusPlus * cosPlus;
- hv[1][i][1] = radiusPlus * sinPlus;
- // x2, y2
- hv[0][i][2] = radiusPlus * cosMinus;
- hv[1][i][2] = radiusPlus * sinMinus;
- // x3, y3
- hv[0][i][3] = radiusMinus * cosMinus;
- hv[1][i][3] = radiusMinus * sinMinus;
-
- index[i] = list;
- }
- return new ACoord(hv, index, this, ACoord.POLYGONS);
- }
-
- protected ACoord getVPUser(boolean emOrHad)
- {
- makeDrawList();
- if(emOrHad == ELECTROMAGNETIC)
- applyEMCuts();
- else
- applyHadCuts();
-
- if(numDraw == 0)
- return null;
-
- double[] h = new double[numDraw];
- double[] v = new double[numDraw];
- int[] index=new int[numDraw];
-
- for(int i=0; i<numDraw; i++)
- {
- int list=listdl[i];
- h[i]=eta[list];
- v[i]=Math.toDegrees(phi[list]);
- index[i]=list;
- }
- return new ACoord(h, v, index, this).includePhiWrapAround("VP");
- }
-
- private void drawGeometry(ACoord display, AWindow window, AGraphics ag, double[] density)
- {
- boolean drawCellGeometry = parameterStore.get(getParameterGroup(), "CellGeometry").getStatus();
- boolean drawCellOutline = parameterStore.get(getParameterGroup(), "CellOutline").getStatus();
- int cellGeometryColor = parameterStore.get(getParameterGroup(), "CellGeometry").getI();
- int cellOutlineColor = parameterStore.get(getParameterGroup(), "CellOutline").getI();
- boolean drawFrame = parameterStore.get(getParameterGroup(), "Frame").getStatus();
- int frameColor = parameterStore.get(getParameterGroup(), "Frame").getI();
- int frameWidth = parameterStore.get(getParameterGroup(), "FrameWidth").getI();
- //only draw frames for Grey/BW color maps if is selected to draw frames
- if(drawFrame && AColorMap.drawFrames())
- drawFrame = true;
- else
- drawFrame = false;
-
- if(!drawCellGeometry && !drawCellOutline)
- return;
-
- // Draw geometry
- for(int i=0; i<display.hv[0].length; ++i)
- {
- if(density[i] == 0.0)
- continue;
-
- if(drawCellGeometry)
- {
- if(drawFrame)
- {
- ag.updateDrawParameters(new ADrawParameters(true, frameColor, 1, 0, frameWidth, 0));
- ag.drawPolygon(display.hv[0][i], display.hv[1][i], display.hv[0][i].length);
- }
- ag.updateDrawParameters(new ADrawParameters(true, cellGeometryColor, 1, 0, 0, 0));
- ag.fillPolygon(display.hv[0][i], display.hv[1][i], display.hv[0][i].length);
- }
- if(drawCellOutline)
- {
- ag.updateDrawParameters(new ADrawParameters(true, cellOutlineColor, 0, 1, 0, 0, false, 1, 0));
- ag.drawPolygon(display.hv[0][i], display.hv[1][i], display.hv[0][i].length);
- }
- }
- }
-
- private void drawHits(ACoord display, AWindow window, AGraphics ag, double[] density)
- {
- int[] color = this.getColor(display.index);
-
- boolean drawCellGeometry = parameterStore.get(getParameterGroup(), "CellGeometry").getStatus();
- boolean drawFrame = parameterStore.get(getParameterGroup(), "Frame").getStatus();
- int frameColor = parameterStore.get(getParameterGroup(), "Frame").getI();
- int frameWidth = parameterStore.get(getParameterGroup(), "FrameWidth").getI();
- int lineWidth = parameterStore.get(getParameterGroup(), "LineWidth").getI();
-
- for(int i=0; i<display.hv[0].length; ++i)
- {
- if(density[i] == 0.0)
- continue;
-
- // draw frame
- if (drawFrame && !drawCellGeometry)
- {
- ag.updateDrawParameters(new ADrawParameters(true, frameColor, 1, 0, frameWidth, 0));
- ag.drawPolygon(display.hv[0][i], display.hv[1][i], display.hv[0][i].length);
- }
-
- // draw hits
- ag.updateDrawParameters(new ADrawParameters(true, color[i], 1, lineWidth, 0, 0));
- ag.setCurrentDataAndIndex(this, display.index[i]);
- ag.fillPolygon(display.hv[0][i], display.hv[1][i], display.hv[0][i].length);
- ag.clearCurrentDataAndIndex();
- }
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/data/ALegoData.java b/graphics/AtlantisJava/src/atlantis/data/ALegoData.java
deleted file mode 100755
index 9c2593e53ed..00000000000
--- a/graphics/AtlantisJava/src/atlantis/data/ALegoData.java
+++ /dev/null
@@ -1,1042 +0,0 @@
-package atlantis.data;
-
-import atlantis.event.AData;
-import atlantis.event.*;
-import java.awt.Color;
-import java.awt.geom.Point2D;
-
-import java.util.Iterator;
-import java.util.List;
-import java.util.Stack;
-
-import atlantis.canvas.AWindow;
-import atlantis.graphics.AGraphics;
-import atlantis.graphics.ALegoDraw;
-import atlantis.parameters.APar;
-import atlantis.projection.AProjectionLegoPlot;
-import atlantis.utils.ALogger;
-import atlantis.utils.AMath;
-
-public class ALegoData
-{
- private static ALogger logger = ALogger.getLogger(ALegoData.class);
-
- private static APar parameterStore = APar.instance();
-
- /**
- * This function loops over the cell data to find the maxEt.
- * It also rescales the height of the cells if different scales are selected
- * @param lego the tower heights
- * @return maxEt the heighest tower height
- */
- public static double findMaxEt(double[][][] lego)
- {
- double maxEt = 0.0;
- double[][] legosum = new double[lego.length][lego[0].length];
- //find colors to loop over
- int largestColourIndex=0;
- int lowestColourIndex=AProjectionLegoPlot.nLayers;
- Iterator colorIterator = AProjectionLegoPlot.colorset.iterator();
- while(colorIterator.hasNext())
- {
- int currentColor = ((Integer) colorIterator.next()).intValue();
- if(currentColor>largestColourIndex)
- largestColourIndex=currentColor;
- if(currentColor<lowestColourIndex)
- lowestColourIndex=currentColor;
- }
- for (int x = AProjectionLegoPlot.nPhiCells - 1; x >= 0; --x)
- {
- for (int y = 0; y < AProjectionLegoPlot.nEtaCells; ++y)
- {
- for(int z=largestColourIndex; z>=lowestColourIndex; z--)
- {
- legosum[x][y] += lego[x][y][z];
- }
- if(legosum[x][y] > maxEt)
- maxEt = legosum[x][y];
- }
- }
- if(maxEt>0)
- {
- if (AProjectionLegoPlot.defaultScale ==1 )
- {
- for (int x = AProjectionLegoPlot.nPhiCells - 1; x >= 0; --x)
- {
- for (int y = 0; y < AProjectionLegoPlot.nEtaCells; ++y)
- {
- for(int z=largestColourIndex; z>=lowestColourIndex; z--)
- {
- if(Math.log10(legosum[x][y])>=AProjectionLegoPlot.minimumofLogScale)
- {
- //if multiple colors then each take linear amount of full log
- double fraction=(lego[x][y][z]/legosum[x][y]);
- lego[x][y][z]=fraction*(Math.log10(legosum[x][y])-AProjectionLegoPlot.minimumofLogScale);
- }
- else
- {
- //if not above minimum of log scale then don't draw
- lego[x][y][z]=0.0;
- }
- }
- }
- }
- }
- else if (AProjectionLegoPlot.defaultScale ==2 )
- {
- for (int x = AProjectionLegoPlot.nPhiCells - 1; x >= 0; --x)
- {
- for (int y = 0; y < AProjectionLegoPlot.nEtaCells; ++y)
- {
- for(int z=largestColourIndex; z>=lowestColourIndex; z--)
- {
- //if multiple colors then each take linear amount of full sqrt
- double fraction=(lego[x][y][z]/legosum[x][y]);
- lego[x][y][z]=fraction*Math.sqrt(legosum[x][y]);
- }
- }
- }
- }
- }
- return maxEt;
- }
-
- public static double findAODMaxEt(AEvent event)
- {
- double AODmaxEt = 0.0;
- //From the caloCluster
- String[] colCluster=event.getActiveCollectionNames("Cluster");
- for(int i=0;i<colCluster.length;i++)
- {
- AClusterData cluster = (AClusterData) event.get(colCluster[i]);
- if (!parameterStore.get("Data", "Cluster").getStatus())
- cluster = null;
- if (cluster != null)
- {
- cluster.makeDrawList();
- for (int m = 0; m < cluster.getNumDraw(); ++m)
- {
- int list = cluster.getDrawIndex(m);
- float et = Math.abs(cluster.getET(list));
- if (et > AODmaxEt)
- AODmaxEt = et;
- }
- }
- }
- //From the Jets - Added code to make th e jet considered in the AOD scaling
- String[] colJet=event.getActiveCollectionNames("Jet");
- for(int i=0;i<colJet.length;i++)
- {
- AJetData jets = (AJetData) event.get(colJet[i]);
- if (!parameterStore.get("Data", "Jet").getStatus())
- jets = null;
- if (jets != null)
- {
- jets.makeDrawList();
- for (int m = 0; m < jets.getNumDraw(); ++m)
- {
- int list = jets.getDrawIndex(m);
- float pt = Math.abs(jets.getPt()[list]);
- if (pt > AODmaxEt)
- AODmaxEt = pt;
- }
- }
- }
- // From the muons
- String[] colMuon=event.getActiveCollectionNames("Muon");
- for(int i=0;i<colMuon.length;i++)
- {
- AMuonData muons = (AMuonData) event.get(colMuon[i]);
- if (!parameterStore.get("Data", "Muon").getStatus())
- muons = null;
- if (muons != null)
- {
- muons.makeDrawList();
- for (int m = 0; m < muons.getNumDraw(); ++m)
- {
- int list = muons.getDrawIndex(m);
- float pt = Math.abs(muons.getPT(list));
- if (pt > AODmaxEt)
- AODmaxEt = pt;
- }
- }
- }
- // From the electrons
- String[] colElectron=event.getActiveCollectionNames("Electron");
- for(int i=0;i<colElectron.length;i++)
- {
- AElectronData electrons = (AElectronData) event.get(colElectron[i]);
- if (!parameterStore.get("Data", "Electron").getStatus())
- electrons = null;
- if (electrons != null)
- {
-
- electrons.makeDrawList();
- for (int e = 0; e < electrons.getNumDraw(); ++e)
- {
- int list = electrons.getDrawIndex(e);
- float pt = Math.abs(electrons.getPT(list));
- if (pt > AODmaxEt)
- AODmaxEt = pt;
- }
- }
- }
- // From the photons
- String[] colPhoton=event.getActiveCollectionNames("Photon");
- for(int i=0;i<colPhoton.length;i++)
- {
- APhotonData photons = (APhotonData) event.get(colPhoton[i]);
- if (!parameterStore.get("Data", "Photon").getStatus())
- photons = null;
- if (photons != null)
- {
- photons.makeDrawList();
- for (int p = 0; p < photons.getNumDraw(); ++p)
- {
- int list = photons.getDrawIndex(p);
- float pt = Math.abs(photons.getPT(list));
- if (pt > AODmaxEt)
- AODmaxEt = pt;
- }
- }
- }
- //From the compositeParticles
- String[] colCompPart=event.getActiveCollectionNames("CompositeParticle");
- for(int i=0;i<colCompPart.length;i++)
- {
- ACompositeParticleData compositeParticles = (ACompositeParticleData) event.get(colCompPart[i]);
- if (!parameterStore.get("Data", "CompositeParticle").getStatus())
- compositeParticles = null;
- if (compositeParticles != null)
- {
- compositeParticles.makeDrawList();
- for (int e = 0; e < compositeParticles.getNumDraw(); ++e)
- {
- int list = compositeParticles.getDrawIndex(e);
- float pt = Math.abs(compositeParticles.getPT(list));
- if (pt > AODmaxEt)
- AODmaxEt = pt;
- }
- }
- }
-
- return AODmaxEt;
- }
-
- public static double findMissingEt(AWindow window, double[][][] lego, AEvent event)
- {
- double met = 0.;
- List hitsAndTracks = event.getHitsAndTracks(window.getProjection());
- for (int h = 0; h < hitsAndTracks.size(); h++)
- {
- AData datatype = ((AData) hitsAndTracks.get(h));
- if (datatype.getName().equals("ETMis"))
- {
- AETMisData mis = (AETMisData) datatype;
- mis.makeDrawList();
- if (mis.getNumDraw() > 0)
- {
- double temp = Math.sqrt(mis.getETx() * mis.getETx() + mis.getETy() * mis.getETy());
- if(temp>met)
- met=temp;
- }
- }
- }
- return met;
- }
-
- public static void fillHistograms(AEvent event, double[][][] lego)
- {
- AProjectionLegoPlot.colorset.clear();
- if (AProjectionLegoPlot.mode == 0)
- {
- // Calorimeter Lego
- fillCaloLego(event, lego);
- }
- else if (AProjectionLegoPlot.mode == 1)
- {
- // Trigger Tower Lego
- fillTriggerTowerLego(event, lego);
- }
- else
- {
- // Jet Elements Lego
- fillJetElementLego(event, lego);
- }
- }
-
- private static void fillCaloLego(AEvent event, double[][][] lego)
- {
- List detectors = event.getCalorimeters();
- for (int det = 0; det < detectors.size(); det++)
- {
- ACalorimeterData calorimeter = (ACalorimeterData) detectors.get(det);
- String calname=calorimeter.getName();
- if (!calname.equals("TILE") && !calname.equals("FCAL")
- && !calname.equals("HEC") && !calname.equals("LAr")
- && !calname.equals("MBTS"))
- {
- logger.warn("Unknown calorimeter name for LegoPlot: " + calorimeter.getName());
- }
-
- calorimeter.makeDrawList();
- // for coloring
- byte[] c = calorimeter.getColor();
- for (int i = 0; i < calorimeter.getNumDraw(); ++i)
- {
- int list = calorimeter.getDrawIndex(i);
- double et = calorimeter.getET(list);
- //MBTS energy is in MeV not GeV
- if(calname.equals("MBTS")) et/=1000.;
- double phi = calorimeter.getPhi(list);
- double eta = calorimeter.getEta(list);
- if (eta > 5 || eta < -5 || et == 0.0)
- continue;
- double dphi = calorimeter.getdPhi(list);
- double deta = calorimeter.getdEta(list);
- phietabinsLoop("calo", phi, dphi, eta, deta, c[list], et, lego);
- }// loop over that calorimeter's cells
- }// loop over the calorimeters
- }
-
- private static void fillTriggerTowerLego(AEvent event, double[][][] lego)
- {
- //will draw even if data status is off
- String[] colTT=event.getCollectionNames("LVL1TriggerTower");
- for(int k=0;k<colTT.length;k++)
- {
- ALVL1TriggerTowerData lvl1TriggerTower = (ALVL1TriggerTowerData) event.get(colTT[k]);
- if (lvl1TriggerTower == null)
- continue;
-
- byte[] ttColor;
- for (int j = 0; j < 2; ++j)
- {
- int energyType = parameterStore.get(lvl1TriggerTower.getParameterGroup(), "EnergyType").getI();
- if((j == 0 && energyType == 1) || (j == 1 && energyType == 0))
- continue;
- lvl1TriggerTower.makeDrawList();
-
- boolean emOrHad;
- if (j == 0)
- {
- emOrHad = ALVL1TriggerTowerData.ELECTROMAGNETIC;
- lvl1TriggerTower.applyEMCuts();
- }
- else
- {
- emOrHad = ALVL1TriggerTowerData.HADRONIC;
- lvl1TriggerTower.applyHadCuts();
- }
- ttColor = lvl1TriggerTower.getColor(emOrHad);
- for (int i = 0; i < lvl1TriggerTower.getNumDraw(); ++i)
- {
- int list = lvl1TriggerTower.getDrawIndex(i);
- double et = lvl1TriggerTower.getET(list, emOrHad);
- double phi = lvl1TriggerTower.getPhi(list);
- double eta = lvl1TriggerTower.getEta(list);
- if (eta > 5 || eta < -5 || et == 0.0)
- continue;
- double dphi = lvl1TriggerTower.getdPhi(list, emOrHad);
- double deta = lvl1TriggerTower.getdEta(list, emOrHad);
- phietabinsLoop("trigger", phi, dphi, eta, deta, ttColor[list], et, lego);
- }// loop over that triggerTower's cells
- }
- }
- }
-
- private static void fillJetElementLego(AEvent event, double[][][] lego)
- {
- //will draw even if data status is off
- String[] colJE=event.getCollectionNames("LVL1JetElement");
- for(int k=0;k<colJE.length;k++)
- {
- ALVL1JetElementData lvl1JetElement = (ALVL1JetElementData) event.get(colJE[k]);
- if (lvl1JetElement == null)
- continue;
- byte[] jeColor = lvl1JetElement.getColor();
- lvl1JetElement.makeDrawList();
- for (int i = 0; i < lvl1JetElement.getNumDraw(); ++i)
- {
- int list = lvl1JetElement.getDrawIndex(i);
- double et = lvl1JetElement.getET(list);
- double phi = lvl1JetElement.getPhi(list);
- double eta = lvl1JetElement.getEta(list);
- if (eta > 5 || eta < -5 || et == 0.0)
- continue;
- double dphi = lvl1JetElement.getdPhi(list);
- double deta = lvl1JetElement.getdEta(list);
- phietabinsLoop("jetElement", phi, dphi, eta, deta, jeColor[list], et, lego);
- }// loop over that jetElement's cells
- }
- }
-
- /**
- * Is used to loop over the phi and eta bins to fill the lego "sender"
- * histogram
- *
- * @param sender name of histogram that was sent for output message
- * @param phi
- * @param dphi
- * @param eta
- * @param deta
- * @param color
- * @param et
- * @param lego
- */
- private static void phietabinsLoop(String sender, double phi, double dphi, double eta, double deta, byte color, double et, double[][][] lego)
- {
- if (color >= AProjectionLegoPlot.nLayers)
- color = (byte) (color % AProjectionLegoPlot.nLayers);
- AProjectionLegoPlot.colorset.add(new Integer(color));
-
- int highphibin = 0, lowphibin = 0;
-
- double phibinsize = (AMath.TWO_PI / AProjectionLegoPlot.nPhiCells);
- highphibin = (int) ((phi + dphi) /phibinsize);
- lowphibin = (int) ((phi - dphi) /phibinsize);
-
- int highetabin = 0, lowetabin = 0;
- double etabinsize = 10.0 / AProjectionLegoPlot.nEtaCells;
- highetabin = (int) ((eta + deta + 5.0) /etabinsize);
- lowetabin = (int) ((eta - deta + 5.0) /etabinsize);
- //check eta values
- if (lowetabin < 0)
- {
- lowetabin=0;
- if (highetabin < 0)
- highetabin=0;
- }
- if (highetabin >= AProjectionLegoPlot.nEtaCells)
- {
- highetabin =AProjectionLegoPlot.nEtaCells-1;
- if (lowetabin >= AProjectionLegoPlot.nEtaCells)
- lowetabin =AProjectionLegoPlot.nEtaCells-1;
- }
-
- for (int phibin = lowphibin; phibin <= highphibin; ++phibin)
- {
- double phiweight = 0;
- if (lowphibin == highphibin)
- phiweight = 1.0;
- else if (phibin == lowphibin)
- phiweight = (lowphibin + 1 - ((phi - dphi) / phibinsize)) * (phibinsize/(2 * dphi));
- else if (phibin == highphibin)
- phiweight = (((phi + dphi) / phibinsize) - highphibin) * (phibinsize/(2 * dphi));
- else
- phiweight = phibinsize/(2 * dphi);
- if (phiweight > 1 || phiweight < 0)
- {
- logger.error("huh(" + sender + ")? how is phiweight...? " + phiweight);
- }
-
- for (int etabin = lowetabin; etabin <= highetabin; ++etabin)
- {
- double etaweight = 0;
- if (lowetabin == highetabin)
- etaweight = 1.0;
- else if (etabin == lowetabin)
- etaweight = (lowetabin + 1 - ((eta - deta + 5.0) / etabinsize)) * (etabinsize/(2 * deta));
- else if (etabin == highetabin)
- etaweight = (((eta + deta + 5.0) / etabinsize) - highetabin) * (etabinsize/(2 * deta));
- else
- etaweight = etabinsize/(2 * deta);
- if (etaweight > 1 || etaweight < 0)
- {
- logger.error("huh(" + sender + ")? how is etaweight...? " + etaweight);
- }
-
- int wphibin = phibin;// for phi wrapping
- while (wphibin >= AProjectionLegoPlot.nPhiCells)
- wphibin -= AProjectionLegoPlot.nPhiCells;
- while (wphibin < 0)
- wphibin += AProjectionLegoPlot.nPhiCells;
- int retabin = etabin;
- if (AProjectionLegoPlot.reverse)
- retabin = AProjectionLegoPlot.nEtaCells - etabin - 1;
-
- // add to the legoplot
- lego[wphibin][retabin][color] += et * phiweight * etaweight;
- }// loop over etabins
- }// loop over phibins
- }// end of phietabinsloop
-
- /**
- * If the user has a different scale selected then this updates the value
- */
- public static double scaleValue(double value)
- {
- if(value==0)
- return 0;
- if (AProjectionLegoPlot.defaultScale == 2)
- {
- value = Math.sqrt(value);
- }
- else if (AProjectionLegoPlot.defaultScale == 1)
- {
- value = Math.log10(value) - AProjectionLegoPlot.minimumofLogScale;
- }
- return value;
- }
-
- public static void drawHistograms(AWindow window, AGraphics ag, AEvent event, double[][][] lego, double maxEt, double met, double AODmaxEt)
- {
- // Draw the other stuff in the event: jets, missing Et, etc.
- double _jetcircleradius = parameterStore.get("LegoPlot", "JetCircleRadius").getD();
- double _legocut = parameterStore.get("LegoPlot", "LegoCut").getD();
- _legocut=scaleValue(_legocut);
- boolean doAOD = false;
- if (AODmaxEt!=0)
- doAOD = true;
-
- //for ordering of ROIs
- Stack jetROI = new Stack(), emTauROI = new Stack(), muonROI = new Stack();
-
- List hitsAndTracks = event.getHitsAndTracks(window.getProjection());
- for (int h = 0; h < hitsAndTracks.size(); h++)
- {
- AData datatype = ((AData) hitsAndTracks.get(h));
- if (datatype.getName().equals("Jet"))
- {
- AJetData jet = (AJetData) datatype;
- jet.makeDrawList();
- byte[] colors = jet.getColor();
- for (int j = 0; j < jet.getNumDraw(); ++j)
- {
- int list = jet.getDrawIndex(j);
- double et = jet.getET(list);
- Color _colorJet = AProjectionLegoPlot.defaultColorMap[colors[list]];
- ALegoDraw.drawJet(et, jet.getEta(list), jet.getPhi(list), _colorJet, window, ag, _jetcircleradius);
- }
- }
- else if (datatype.getName().equals("ETMis"))
- {
- AETMisData mis = (AETMisData) datatype;
- mis.makeDrawList();
- if (mis.getNumDraw() > 0)
- {
- byte[] colors = mis.getColor();
- int phib = (int) ((mis.getPhi()) * AProjectionLegoPlot.nPhiCells / AMath.TWO_PI);
- if (phib < 0)
- phib += AProjectionLegoPlot.nPhiCells;
- if (phib >= AProjectionLegoPlot.nPhiCells)
- phib -= AProjectionLegoPlot.nPhiCells;
- Color _colorMis = AProjectionLegoPlot.defaultColorMap[colors[0]];
- ALegoDraw.drawMissEt(window, ag, phib, mis.getET(), _colorMis, maxEt);
- }
- }
- //save the ROIs so they can be drawn jet-em-muon
- else if (datatype.getName().equals("JetROI"))
- {
- jetROI.push(h);
- }
- else if (datatype.getName().equals("EmTauROI"))
- {
- emTauROI.push(h);
- }
- else if (datatype.getName().equals("MuonROI"))
- {
- muonROI.push(h);
- }
- }//end of loop over hitsandtracks
-
- //now draw the ROIs in the correct order
- drawROIs(jetROI, window, ag, event);
- drawROIs(emTauROI, window, ag, event);
- drawROIs(muonROI, window, ag, event);
-
-
- //for towers find colors to loop over
- int largestColourIndex=0;
- int lowestColourIndex=AProjectionLegoPlot.nLayers;
- Iterator colorIterator = AProjectionLegoPlot.colorset.iterator();
- while(colorIterator.hasNext())
- {
- int currentColor = ((Integer) colorIterator.next()).intValue();
- if(currentColor>largestColourIndex)
- largestColourIndex=currentColor;
- if(currentColor<lowestColourIndex)
- lowestColourIndex=currentColor;
- }
- // Draw the EM and HAD towers
- for (int y = 0; y < AProjectionLegoPlot.nEtaCells; ++y)
- {
- for (int x = AProjectionLegoPlot.nPhiCells - 1; x >= 0; --x)
- {
- double binheight = 0;
- if(AProjectionLegoPlot.getDrawEMHAD() && AProjectionLegoPlot.colorset.size()==2)
- {
- //for Em/had option should only have 2 colors
- int z=AProjectionLegoPlot.colorEM;
- binheight=lego[x][y][z];
- if (binheight > _legocut)
- {
- ALegoDraw.drawBox(window, ag, x, y, z, 0.0, binheight, maxEt, 0.5);
- if(lego[x][y][AProjectionLegoPlot.colorHad]> _legocut)
- {
- z=AProjectionLegoPlot.colorHad;
- ALegoDraw.drawBox(window, ag, x, y, z, binheight, lego[x][y][z], maxEt, 0.5);
- }
- }
- else if(lego[x][y][AProjectionLegoPlot.colorHad]> _legocut)
- {
- z=AProjectionLegoPlot.colorHad;
- ALegoDraw.drawBox(window, ag, x, y, z, 0.0, lego[x][y][z], maxEt, 0.5);
- }
- }
- else
- {
- //if not Em/Had then loop over colors
- for(int z=largestColourIndex; z>=lowestColourIndex; z--)
- {
- if (lego[x][y][z] > _legocut)
- {
- ALegoDraw.drawBox(window, ag, x, y, z, binheight, lego[x][y][z], maxEt, 0.5);
- binheight += lego[x][y][z];
- }
- }
- }
- }
- }
-
- //loop again and draw things that need to be on top of histogram
- for (int h = 0; h < hitsAndTracks.size(); h++)
- {
- AData datatype = ((AData) hitsAndTracks.get(h));
- if (datatype.getName().equals("Jet"))
- {
- AJetData jet = (AJetData) datatype;
- jet.makeDrawList();
- byte[] colors = jet.getColor();
- for (int j = 0; j < jet.getNumDraw(); ++j)
- {
- int list = jet.getDrawIndex(j);
- double et = jet.getET(list);
- Color _colorJet = AProjectionLegoPlot.defaultColorMap[colors[list]];
- if (parameterStore.get("LegoPlot", "JetText").getStatus())
- ALegoDraw.drawJetText(et, jet.getEta(list), jet.getPhi(list), _colorJet, window, ag, _jetcircleradius);
- }
- }
- }
-
- if (doAOD)
- {
- //Draw the new jet Towers
- String[] colJet=event.getActiveCollectionNames("Jet");
- for(int i=0;i<colJet.length;i++)
- {
- AJetData jets = (AJetData) event.get(colJet[i]);
-
- if (!parameterStore.get("Data", "Jet").getStatus())
- jets = null;
- if (jets != null)
- {
- jets.makeDrawList();
- byte[] colors = jets.getColor();
- for (int j = 0; j < jets.getNumDraw(); ++j)
- {
- int list = jets.getDrawIndex(j);
- Color _colorJet = AProjectionLegoPlot.defaultColorMap[colors[list]];
- int etabin = (int) ((jets.getEta(list) + 5.0) * AProjectionLegoPlot.nEtaCells / 10.0);
- if (AProjectionLegoPlot.reverse)
- etabin = AProjectionLegoPlot.nEtaCells - etabin;
- int phibin = (int) ((jets.getPhi(list)) * AProjectionLegoPlot.nPhiCells / AMath.TWO_PI);
- double pt = Math.abs(jets.getPt()[list]);
- pt=scaleValue(pt);
- ALegoDraw.drawBox(window, ag, phibin, etabin, AProjectionLegoPlot.DRAW_JET,_colorJet, 0, pt, maxEt, 2.0);
- }
- }
- }
-
- // Draw the caloClusters
- String[] colCluster=event.getActiveCollectionNames("Cluster");
- for(int i=0;i<colCluster.length;i++)
- {
- AClusterData cluster = (AClusterData) event.get(colCluster[i]);
- if (!parameterStore.get("Data", "Cluster").getStatus())
- cluster = null;
- if (cluster != null)
- {
- cluster.makeDrawList();
- for (int m = 0; m < cluster.getNumDraw(); ++m)
- {
- int list = cluster.getDrawIndex(m);
- int etabin = (int) ((cluster.getEta(list) + 5.0) * AProjectionLegoPlot.nEtaCells / 10.0);
- if (AProjectionLegoPlot.reverse)
- etabin = AProjectionLegoPlot.nEtaCells - etabin;
- int phibin = (int) ((cluster.getPhi(list)) * AProjectionLegoPlot.nPhiCells / AMath.TWO_PI);
- double et = Math.abs(cluster.getET(list));
- et=scaleValue(et);
- ALegoDraw.drawBox(window, ag, phibin, etabin, AProjectionLegoPlot.DRAW_CLUSTER, 0, et, maxEt, .5);
- }
- }
- }
-
- // Draw the bjets
- String[] colBjets=event.getActiveCollectionNames("BJet");
- for(int i=0;i<colBjets.length;i++)
- {
- ABJetData bjets = (ABJetData) event.get(colBjets[i]);
- if (!parameterStore.get("Data", "BJet").getStatus())
- bjets = null;
- if (bjets != null)
- {
- bjets.makeDrawList();
- for (int bj = 0; bj < bjets.getNumDraw(); ++bj)
- {
- int list = bjets.getDrawIndex(bj);
- double et = bjets.getPT(list);
- ALegoDraw.drawJet(et, bjets.getEta(list), bjets.getPhi(list), AProjectionLegoPlot.defaultColorMap[parameterStore.get("BJet", "Constant").getI()], window, ag, _jetcircleradius + _jetcircleradius / 5.0);
- }
- }
- }
-
- // Draw the taujets
- String[] colTau=event.getActiveCollectionNames("TauJet");
- for(int i=0;i<colTau.length;i++)
- {
- ATauJetData tjets = (ATauJetData) event.get(colTau[i]);
- if (!parameterStore.get("Data", "TauJet").getStatus())
- tjets = null;
- if (tjets != null)
- {
- tjets.makeDrawList();
- for (int tj = 0; tj < tjets.getNumDraw(); ++tj)
- {
- int list = tjets.getDrawIndex(tj);
- double et = tjets.getPT(list);
- ALegoDraw.drawJet(et, tjets.getEta(list), tjets.getPhi(list), AProjectionLegoPlot.defaultColorMap[parameterStore.get("TauJet", "Constant").getI()], window, ag, _jetcircleradius / 2.0);
- }
- }
- }
-
- //Draw the muons
- String[] colMuon=event.getActiveCollectionNames("Muon");
- for(int i=0;i<colMuon.length;i++)
- {
- AMuonData muons = (AMuonData) event.get(colMuon[i]);
- if (!parameterStore.get("Data", "Muon").getStatus())
- muons = null;
- if (muons != null)
- {
- muons.makeDrawList();
- for (int m = 0; m < muons.getNumDraw(); ++m)
- {
- int list = muons.getDrawIndex(m);
- int etabin = (int) ((muons.getEta(list) + 5.0) * AProjectionLegoPlot.nEtaCells / 10.0);
- if (AProjectionLegoPlot.reverse)
- etabin = AProjectionLegoPlot.nEtaCells - etabin;
- int phibin = (int) ((muons.getPhi(list)) * AProjectionLegoPlot.nPhiCells / AMath.TWO_PI);
- double pt = Math.abs(muons.getPT(list));
- pt=scaleValue(pt);
- ALegoDraw.drawBox(window, ag, phibin, etabin, AProjectionLegoPlot.DRAW_MUON, 0, pt, maxEt, 0.5);
- }
- }
- }
-
- //Draw the electrons
- String[] colElectron=event.getActiveCollectionNames("Electron");
- for(int i=0;i<colElectron.length;i++)
- {
- AElectronData electrons = (AElectronData) event.get(colElectron[i]);
-
- if (!parameterStore.get("Data", "Electron").getStatus())
- electrons = null;
- if (electrons != null)
- {
- electrons.makeDrawList();
- for (int e = 0; e < electrons.getNumDraw(); ++e)
- {
- int list = electrons.getDrawIndex(e);
- int etabin = (int) ((electrons.getEta(list) + 5.0) * AProjectionLegoPlot.nEtaCells / 10.0);
- if (AProjectionLegoPlot.reverse)
- etabin = AProjectionLegoPlot.nEtaCells - etabin;
- int phibin = (int) ((electrons.getPhi(list)) * AProjectionLegoPlot.nPhiCells / AMath.TWO_PI);
- double pt = Math.abs(electrons.getPT(list));
- pt=scaleValue(pt);
- ALegoDraw.drawBox(window, ag, phibin, etabin, AProjectionLegoPlot.DRAW_ELECTRON, 0, pt, maxEt, 0.5);
- }
- }
- }
-
- //Draw the photons
- String[] colPhoton=event.getActiveCollectionNames("Photon");
- for(int i=0;i<colPhoton.length;i++)
- {
- APhotonData photons = (APhotonData) event.get(colPhoton[i]);
- if (!parameterStore.get("Data", "Photon").getStatus())
- photons = null;
- if (photons != null)
- {
- photons.makeDrawList();
- for (int p = 0; p < photons.getNumDraw(); ++p)
- {
- int list = photons.getDrawIndex(p);
- int etabin = (int) ((photons.getEta(list) + 5.0) * AProjectionLegoPlot.nEtaCells / 10.0);
- if (AProjectionLegoPlot.reverse)
- etabin = AProjectionLegoPlot.nEtaCells - etabin;
- int phibin = (int) ((photons.getPhi(list)) * AProjectionLegoPlot.nPhiCells / AMath.TWO_PI);
- double pt = Math.abs(photons.getPT(list));
- pt=scaleValue(pt);
- ALegoDraw.drawBox(window, ag, phibin, etabin, AProjectionLegoPlot.DRAW_PHOTON, 0, pt, maxEt, 0.5);
- }
- }
- }
-
- //Draw the compositeParticles
- String[] colCompPart=event.getActiveCollectionNames("CompositeParticle");
- for(int i=0;i<colCompPart.length;i++)
- {
- ACompositeParticleData compositeParticles = (ACompositeParticleData) event.get(colCompPart[i]);
- if (!parameterStore.get("Data", "CompositeParticle").getStatus())
- compositeParticles = null;
- if (compositeParticles != null)
- {
- compositeParticles.makeDrawList();
- for (int e = 0; e < compositeParticles.getNumDraw(); ++e)
- {
- int list = compositeParticles.getDrawIndex(e);
- int etabin = (int) ((compositeParticles.getEta(list) + 5.0) * AProjectionLegoPlot.nEtaCells / 10.0);
- if (AProjectionLegoPlot.reverse)
- etabin = AProjectionLegoPlot.nEtaCells - etabin;
- int phibin = (int) ((compositeParticles.getPhi(list)) * AProjectionLegoPlot.nPhiCells / AMath.TWO_PI);
- double pt = Math.abs(compositeParticles.getPT(list));
- pt=scaleValue(pt);
- //change how drawn depending on type
- if(Math.abs(compositeParticles.getPdgId(list))==13)
- ALegoDraw.drawBox(window, ag, phibin, etabin, AProjectionLegoPlot.DRAW_MUON, 0, pt, maxEt, 0.5);
- else if(Math.abs(compositeParticles.getPdgId(list))==11)
- ALegoDraw.drawBox(window, ag, phibin, etabin, AProjectionLegoPlot.DRAW_ELECTRON, 0, pt, maxEt, 0.5);
- else if(Math.abs(compositeParticles.getPdgId(list))==22)
- ALegoDraw.drawBox(window, ag, phibin, etabin, AProjectionLegoPlot.DRAW_PHOTON, 0, pt, maxEt, 0.5);
- else if(Math.abs(compositeParticles.getPdgId(list))==5)
- ALegoDraw.drawBox(window, ag, phibin, etabin, AProjectionLegoPlot.DRAW_BJET, 0, pt, maxEt, 0.5);
- else if(Math.abs(compositeParticles.getPdgId(list))==15)
- ALegoDraw.drawBox(window, ag, phibin, etabin, AProjectionLegoPlot.DRAW_TAUJET, 0, pt, maxEt, 0.5);
- else if(compositeParticles.getTypeEV(list).equals("EVParticleJet"))
- ALegoDraw.drawBox(window, ag, phibin, etabin, AProjectionLegoPlot.DRAW_JET, 0, pt, maxEt, 0.5);
- else
- ALegoDraw.drawBox(window, ag, phibin, etabin, AProjectionLegoPlot.DRAW_COMPOSITEPARTICLE, 0, pt, maxEt, 0.5);
- }
- }
- }
- }//if doAOD
- }//drawHistograms
-
- public static void drawROIs(Stack ROIstack, AWindow window, AGraphics ag, AEvent event)
- {
- List hitsAndTracks = event.getHitsAndTracks(window.getProjection());
- //loop over ROIs
- while(ROIstack.size()>0)
- {
- int h = (Integer) ROIstack.pop();
- AData datatype = ((AData) hitsAndTracks.get(h));
-
- byte[] ROIColor;
- double deltaPhi;
- double deltaEta;
- AROIData ROIData = (AROIData) datatype;
- ROIData.makeDrawList();
- ROIColor = datatype.getColor();
- deltaEta = parameterStore.get(datatype.getName(), "deta").getD();
- deltaPhi = parameterStore.get(datatype.getName(), "dphi").getD();
- // deltaEta and deltaPhi should not be too large
- for (int j = 0; j < ROIData.getNumDraw(); ++j)
- {
- int numPoints = 4;
- int list = ROIData.getDrawIndex(j);
- double ROIphi = ROIData.getPhi(list);
- double ROIeta = ROIData.getEta(list);
- if (AProjectionLegoPlot.reverse)
- ROIeta = -ROIeta;
- double leftPhi = ROIphi - deltaPhi;
- double rightPhi = ROIphi + deltaPhi;
- double topEta = ROIeta + deltaEta;
- double bottomEta = ROIeta - deltaEta;
- if ((ROIColor[list] < AProjectionLegoPlot.defaultColorMap.length) && (ROIColor[list] >= 0))
- ag.setColor(AProjectionLegoPlot.defaultColorMap[ROIColor[list]]);
- ag.setLineWidth(3);
- double ROIx = 0.0;
- double ROIy = 0.0;
- double[][] hv = new double[2][numPoints];
- if ((rightPhi <= AMath.TWO_PI) && (leftPhi >= 0.0))
- {
- for (int p = 0; p < numPoints; p++)
- {
- switch (p)
- {
- case 0:
- ROIx = rightPhi * 360.0 / AMath.TWO_PI;
- ROIy = bottomEta;
- break;
- case 1:
- ROIx = leftPhi * 360.0 / AMath.TWO_PI;
- ROIy = bottomEta;
- break;
- case 2:
- ROIx = leftPhi * 360.0 / AMath.TWO_PI;
- ROIy = topEta;
- break;
- case 3:
- ROIx = rightPhi * 360.0 / AMath.TWO_PI;
- ROIy = topEta;
- break;
- }
- if(ROIy <= -5.0)
- ROIy = -5.0;
- if(ROIy >= 5.0)
- ROIy = 5.0;
- //move phi value due to slant of eta axis
- ROIx=AProjectionLegoPlot.adjustPhi(window,ROIx,ROIy);
- hv[0][p] = ROIx;
- hv[1][p] = ROIy;
- }
- }
- else if ((rightPhi > AMath.TWO_PI) && (leftPhi < 0.0))
- {
- for (int p = 0; p < numPoints; p++)
- {
- switch (p)
- {
- case 0:
- ROIx = 360.0;
- ROIy = bottomEta;
- break;
- case 1:
- ROIx = 0.0;
- ROIy = bottomEta;
- break;
- case 2:
- ROIx = 0.0;
- ROIy = topEta;
- break;
- case 3:
- ROIx = 360.0;
- ROIy = topEta;
- break;
- }
- if(ROIy <= -5.0)
- ROIy = -5.0;
- if(ROIy >= 5.0)
- ROIy = 5.0;
- //move phi value due to slant of eta axis
- ROIx=AProjectionLegoPlot.adjustPhi(window,ROIx,ROIy);
- hv[0][p] = ROIx;
- hv[1][p] = ROIy;
- }
- }
- else if (rightPhi > AMath.TWO_PI)
- {
- double[][] hvWrap = new double[2][numPoints];
- double ROIxWrap = 0.0;
- for (int p = 0; p < numPoints; p++)
- {
- switch (p)
- {
- case 0:
- ROIx = 360.0;
- ROIxWrap = (rightPhi - AMath.TWO_PI) * 360.0 / AMath.TWO_PI;
- ROIy = bottomEta;
- break;
- case 1:
- ROIx = leftPhi * 360.0 / AMath.TWO_PI;
- ROIxWrap = 0.0;
- ROIy = bottomEta;
- break;
- case 2:
- ROIx = leftPhi * 360.0 / AMath.TWO_PI;
- ROIxWrap = 0.0;
- ROIy = topEta;
- break;
- case 3:
- ROIx = 360.0;
- ROIxWrap = (rightPhi - AMath.TWO_PI) * 360.0 / AMath.TWO_PI;
- ROIy = topEta;
- break;
- }
- if(ROIy <= -5.0)
- ROIy = -5.0;
- if(ROIy >= 5.0)
- ROIy = 5.0;
- //move phi value due to slant of eta axis
- ROIx=AProjectionLegoPlot.adjustPhi(window,ROIx,ROIy);
- hv[0][p] = ROIx;
- hv[1][p] = ROIy;
- //move phi value due to slant of eta axis
- ROIxWrap=AProjectionLegoPlot.adjustPhi(window,ROIxWrap,ROIy);
- hvWrap[0][p] = ROIxWrap;
- hvWrap[1][p] = ROIy;
- }
- Point2D.Double p= new Point2D.Double(0,0);
- for(int i=0; i<numPoints; i++)
- {
- p = window.calculateDisplay(hvWrap[0][i],hvWrap[1][i]);
- hvWrap[0][i]=p.x;
- hvWrap[1][i]=p.y;
- }
- ag.fillPolygon(hvWrap[0], hvWrap[1], numPoints);
- }
- else
- {
- double[][] hvWrap = new double[2][numPoints];
- double ROIxWrap = 0.0;
- for (int p = 0; p < numPoints; p++)
- {
- switch (p)
- {
- case 0:
- ROIx = rightPhi * 360.0 / AMath.TWO_PI;
- ROIxWrap = 360.0;
- ROIy = bottomEta;
- break;
- case 1:
- ROIx = 0.0;
- ROIxWrap = (leftPhi + AMath.TWO_PI) * 360.0 / AMath.TWO_PI;
- ROIy = bottomEta;
- break;
- case 2:
- ROIx = 0.0;
- ROIxWrap = (leftPhi + AMath.TWO_PI) * 360.0 / AMath.TWO_PI;
- ROIy = topEta;
- break;
- case 3:
- ROIx = rightPhi * 360.0 / AMath.TWO_PI;
- ROIxWrap = 360.0;
- ROIy = topEta;
- break;
- }
- if(ROIy <= -5.0)
- ROIy = -5.0;
- if(ROIy >= 5.0)
- ROIy = 5.0;
- //move phi value due to slant of eta axis
- ROIx=AProjectionLegoPlot.adjustPhi(window,ROIx,ROIy);
- hv[0][p] = ROIx;
- hv[1][p] = ROIy;
- //move phi value due to slant of eta axis
- ROIxWrap=AProjectionLegoPlot.adjustPhi(window,ROIxWrap,ROIy);
- hvWrap[0][p] = ROIxWrap;
- hvWrap[1][p] = ROIy;
- }
- Point2D.Double p= new Point2D.Double(0,0);
- for(int i=0; i<numPoints; i++)
- {
- p = window.calculateDisplay(hvWrap[0][i],hvWrap[1][i]);
- hvWrap[0][i]=p.x;
- hvWrap[1][i]=p.y;
- }
- ag.fillPolygon(hvWrap[0], hvWrap[1], numPoints);
- }
- Point2D.Double p= new Point2D.Double(0,0);
- for(int i=0; i<numPoints; i++)
- {
- p = window.calculateDisplay(hv[0][i],hv[1][i]);
- hv[0][i]=p.x;
- hv[1][i]=p.y;
- }
- ag.fillPolygon(hv[0], hv[1], numPoints);
- }//end of loop over ROI data
- }
-
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/data/AMBTSData.java b/graphics/AtlantisJava/src/atlantis/data/AMBTSData.java
deleted file mode 100644
index 931b749640d..00000000000
--- a/graphics/AtlantisJava/src/atlantis/data/AMBTSData.java
+++ /dev/null
@@ -1,595 +0,0 @@
-package atlantis.data;
-
-import atlantis.event.*;
-import atlantis.geometry.ACalorimeterDetector;
-import atlantis.globals.AGlobals;
-import atlantis.graphics.ACoord;
-import atlantis.output.ALogInterface;
-import atlantis.output.AOutput;
-import atlantis.projection.AProjection2D;
-import atlantis.projection.AProjectionYX;
-import atlantis.utils.AAtlantisException;
-import atlantis.utils.AHashMap;
-import atlantis.utils.ALogger;
-
-
-/**
- * The Minimum Bias Trigger Scintillator implementation.
- *
- * @author Mark Stockton
- */
-public class AMBTSData extends ACalorimeterData
-{
- private static ALogger logger = ALogger.getLogger(AMBTSData.class);
-
-
- /*
- * For Rz histograms may/will need:
- *
- * private int[][] cellTable;
- *
- * phiIndex[i]
- * etaIndex[i]
- * outerEta -> use -> detector.getEtaMax()
- * outerR -> use -> detector.getRMax()
- * outerZ -> use -> detector.getZMax()
- * etaGranularity
- */
-
- protected float[] quality;
- protected float[] time;
- //label not needed at present as is just a string made
- // from type, module and channel
- //protected String[] label;
-
- // data for real pulse shapes plots
- private int[][] adcCounts = null;
- private float[] cellPedestal = null;
- private float[] cellRawTime = null;
- private float[] cellRawAmplitude = null;
- private static boolean pulseShapesDataAvailable = false;
- private static final String LOOKUP_TABLE_FILE =
- AGlobals.instance().getHomeDirectory() + "configuration" +
- System.getProperty("file.separator") +
- "rpsplt_tile.csv";
- // number of lookup table values for real pulse shapes plots calculation
- private static final short NUMBER_OF_LOOKUP_VALUES = 401;
-
-
-
-
- protected ACalorimeterDetector[] MBTSlayers = new ACalorimeterDetector[2];
-
- AMBTSData(AHashMap p, AEvent e)
- {
- super(p,e);
-
- channel = p.getIntArray("channel");
- /*
- * this energy is in MeV not GeV
- */
- et = p.getFloatArray("energy");
- etSum = p.getFloatArray("energy");
- //label = p.getStringArray("label");
- quality = p.getFloatArray("quality");
- sampling = p.getIntArray("sampling");
- time = p.getFloatArray("time");
-
- /*
- * The phi and eta coordinates used here are actually not phi and eta
- *
- * Instead: - phi refers to the module number 0-8
- * - eta refers to which side of the detector
- *
- * The actual phi and eta are then calculated from the geometry object
- */
- int[] inteta;
- int[] intphi;
- if( p.containsKey("module"))
- {
- //phi new version
- intphi = p.getIntArray("module");
- }
- else
- {
- //phi first version
- float[] tempphi = p.getFloatArray("phi");
- intphi = new int[numData];
- for(int i=0; i<numData; i++)
- {
- intphi[i]=(int) (( (8*tempphi[i])/(2*Math.PI))-(1/2));
- }
- }
-
- if( p.containsKey("type"))
- {
- //eta new version
- inteta = p.getIntArray("type");
- }
- else
- {
- //eta first version
- float[] tempeta = p.getFloatArray("eta");
- inteta = new int[numData];
- for(int i=0; i<numData; i++)
- {
- if(tempeta[i]<0)
- {
- inteta[i] = -1;
- }
- else
- {
- inteta[i] = 1;
- }
- }
- }
- eta = new float[numData];
- phi = new float[numData];
- for(int i=0; i<numData; i++)
- {
- eta[i]=inteta[i];
- phi[i]=intphi[i];
- }
-
- //now define sub and side depending on eta value
- for(int i=0; i<numData; i++)
- {
- if(eta[i]<0)
- {
- sub[i] = 0;
- side[i] = -1;
- }
- else
- {
- sub[i] = 1;
- side[i] = 1;
- }
- }
-
- //store the two sampling of the MBTS geometry
- for (int i=0; i<ACalorimeterDetector.count(); i++)
- {
- ACalorimeterDetector detector = ACalorimeterDetector.get(i);
- if(detector.getName().equals("Minimum Bias Trigger Scintillators"))
- {
- MBTSlayers[detector.getSampling()] = detector;
- }
- }
-
- // read in MBTS data for real pulse shapes plots
- readPulseShapePlotData(p);
-
- }
-
-
-
- private void readPulseShapePlotData(AHashMap p)
- {
- // read ADCCounts and cell data for real pulse shapes plots
- adcCounts = super.getADCCountsData(p);
-
- // read other MBTS data for real pulse shapes plots
- cellPedestal = (p.get("cellPedestal") != null) ? p.getFloatArray("cellPedestal") : null;
- cellRawTime = (p.get("cellRawTime") != null) ? p.getFloatArray("cellRawTime") : null;
- cellRawAmplitude = (p.get("cellRawAmplitude") != null) ? p.getFloatArray("cellRawAmplitude") : null;
-
- pulseShapesDataAvailable = false;
- if(adcCounts != null && cellPedestal != null && cellRawTime != null &&
- cellRawAmplitude != null)
- {
- pulseShapesDataAvailable = true;
-
- logger.debug(CALORIMETER_NAME +
- ": data for real pulse shape plots available");
-
- if(ACalorimeterRPSPLT.areTileLookupTablesInitialized())
- {
- logger.debug(CALORIMETER_NAME +
- ": lookup tables have already been read in");
- }
- else
- {
- logger.debug(CALORIMETER_NAME +
- ": lookup table values have not been read in yet\n" +
- " trying to read file: " + LOOKUP_TABLE_FILE);
-
- try
- {
- ATILEData.readLookupTableFile();
- logger.debug(CALORIMETER_NAME +
- ": values from " + LOOKUP_TABLE_FILE +
- " successfully read in");
- }
- catch(AAtlantisException ex)
- {
- logger.debug(CALORIMETER_NAME +
- ": reading " + LOOKUP_TABLE_FILE +
- " failed, real pulse shapes plots will not " +
- "be available, reason: " + ex.getMessage(), ex);
- pulseShapesDataAvailable = false;
- }
- }
- }
-
- } // readPulseShapePlotData() -------------------------------------------
-
-
-
- /**
- * Returns the name of the parameter group.
- *
- * @return String parameter group
- */
- public String getParameterGroup()
- {
- return "TILE";
- }
-
- /**
- * Returns the name of the datatype.
- *
- * @return String datatype
- */
- public String getName()
- {
- return "MBTS";
- }
-
- /**
- * Returns the name of the datatype.
- *
- * @return String datatype
- */
- public String getNameScreenName()
- {
- return "MBTS";
- }
-
- /**
- * Returns the type of calorimeter (ECAL/HCAL) for a hit.
- *
- * @param index int hit index
- * @return String calorimeter type
- */
- public String getCalorimeterType(int index)
- {
- return "HCAL";
- }
-
- /**
- * Draws the MBTS data in the y-x projection.
- *
- * @return ACoord cell geometry polygons
- */
- protected ACoord getYXUser()
- {
- makeDrawList();
-
- int mode = parameterStore.get("YX", "Mode").getI();
- if (mode != AProjectionYX.MODE_MBTS)
- {
- return ACoord.NO_DATA;
- }
-
- double[][][] hv = new double[2][numDraw][];
- int[] index = new int[numDraw];
- for (int i = 0; i < numDraw; i++)
- {
- int j = listdl[i];
- double rMax = MBTSlayers[sampling[j]].getRMax();
- double rMin = MBTSlayers[sampling[j]].getRMin();
- int numPhi = MBTSlayers[sampling[j]].getNumPhi();
- double phiMin = Math.PI*2*phi[j]/numPhi;
- double phiMax = Math.PI*2*(1+phi[j])/numPhi;
- hv[0][i] = new double[] {rMax*Math.cos(phiMin), rMax*Math.cos(phiMax),
- rMin*Math.cos(phiMax), rMin*Math.cos(phiMin)};
- hv[1][i] = new double[] {rMax*Math.sin(phiMin), rMax*Math.sin(phiMax),
- rMin*Math.sin(phiMax), rMin*Math.sin(phiMin)};
- index[i] = j;
- }
-
- return new ACoord(hv, index, this);
- }
-
- /**
- * Draws the MBTS data in the rho-z projection. See the description of
- * filterDrawListRZ() for an explanation of the drawing method.
- *
- * @return ACoord cell geometry polygons
- */
- protected ACoord getRZUser()
- {
- makeDrawList();
-
- double[][][] hv = new double[2][numDraw][];
- int[] index = new int[numDraw];
-
- for (int i = 0; i < numDraw; i++)
- {
- int j = listdl[i];
- int sign = MBTSlayers[sampling[j]].getRSign((int) phi[j]);
- double zMax = MBTSlayers[sampling[j]].getZMax() * side[j];
- double zMin = MBTSlayers[sampling[j]].getZMin() * side[j];
- double rMax = MBTSlayers[sampling[j]].getRMax() * sign;
- double rMin = MBTSlayers[sampling[j]].getRMin() * sign;
- hv[0][i] = new double[] {zMax, zMin, zMin, zMax};
- hv[1][i] = new double[] {rMax, rMax, rMin, rMin};
- index[i] = j;
- }
-
- return new ACoord(hv, index, this);
- }
-
- /**
- * Applies cuts to the data.
- */
- protected void applyCuts()
- {
- super.applyCuts();
-
- cut("CutsCalo", "MBTSEnergy", "MBTSEnergy", et);
- int cutSub = parameterStore.get("CutsCalo", "MBTS").getI();
- if(cutSub != -1)
- {
- cutArray(sub, cutSub, "Endcap");
- }
- }
-
- /**
- * Returns the data in the phi-rho projection.
- *
- * @return ACoord polygons representing calorimeter cells
- */
- public ACoord getFRUser()
- {
- return getYXUser().convertYXToFR().includePhiWrapAround("FR");
- }
-
- /**
- * Returns info about a selected hit (for picking)
- *
- * @param index int hit index
- * @return String info
- */
- public String getHitInfo(int index)
- {
- int simpleOutput = AGlobals.instance().getSimpleOutput();
- if(simpleOutput>0) return getNameScreenName()+" index: " + index+
- "\n Energy="+correctEnergy(energy[index])+" GeV\n ";
-
- //find the cell energy on the opposite MBTS layer
- String cellminus, cellplus;
- double tempEnergy=0.0;
- for(int i=0; i<energy.length; i++)
- {
- if(eta[i]==(-1.0*eta[index]) && phi[i]==phi[index] && sampling[i]==sampling[index])
- {
- tempEnergy=energy[i];
- }
- }
-
- if(eta[index]<0)
- {
- cellminus = correctEnergy(energy[index]);
- cellplus = correctEnergy(tempEnergy);
- }
- else
- {
- cellplus = correctEnergy(energy[index]);
- cellminus = correctEnergy(tempEnergy);
- }
- StringBuffer msg = new StringBuffer(CALORIMETER_NAME + " cell ");
-
- // calling AIdHelper.getFullIdentifier(id[index])[0] - does not work,
- // id array is not present in the event data. it is arbitrarily created
- // in Atlantis, however, but contains only indices, thus currently
- // (2008-11-25) index and id[index] are the same values
- msg.append(" (id: " + id[index] + " index: " + index + ")");
-
- msg.append("\n Energy = " + correctEnergy(energy[index]));
- msg.append("\n (MBTS + = " + cellplus + " MBTS - = " + cellminus + ")");
- msg.append("\n time = " + time[index]);
- msg.append("\n quality = " + quality[index]);
- msg.append("\n type = " + String.format("%.4f",eta[index]));
- msg.append("\n module = " + String.format("%.1f",phi[index]));
- msg.append("\n sampling = " + sampling[index]);
- msg.append("\n channel = " + channel[index]);
-
- // real pulse shapes plots
- msg.append("\n cell pedestal = ");
- String m = (cellPedestal != null) ? Float.toString(cellPedestal[index]) +
- " ADC counts" : "n/a";
- msg.append(m);
-
- m = pulseShapesDataAvailable ? "" : "\n data for real pulse shapes plot n/a";
- msg.append(m);
-
- return msg.toString();
-
- } // getHitInfo() -------------------------------------------------------
-
- private String correctEnergy(double energy)
- {
- String energyOutput;
- if(energy>1.)
- {
- energyOutput = String.format("%.2f",energy) + " MeV";
- }
- else if(energy>0.001)
- {
- energy*=1000.;
- energyOutput = String.format("%.2f",energy) + " KeV";
- }
- else
- {
- energy*=1000.*1000.;
- energyOutput = String.format("%.2f",energy) + " eV";
- }
- return energyOutput;
- }
-
-
- /**
- * Returns the histograms for this projection.
- *
- * @param projection AProjection2D current projection
- * @return ACoord[] polygons representing histograms
- */
- protected ACoord[] getUserHistograms(AProjection2D projection)
- {
- ACoord[] data = ACoord.NO_HISTOGRAMS;
- //TODO add MBTS RZ Histograms option turned off in gui
- //if (projection instanceof AProjectionRZ)
- // data = getRZHistograms();
- return projection.nonLinearTransform(data);
- }
-
-
-
- // calculate real pulse shapes values based on the values in the lookup tables
- // taken from ATILEData. This function can't be shared from ACalorimeterData
- // (shared by LAr, FCAL, HEC) since the calculation is different and can't
- // call it directly from TILE since there are two channels.
- // Should likely be refactored (so that method is somewhat shared) - after
- // discussion with someone from TILE/MBTS/LAr ...
- private double getPhysicsPulseShape(double xTime, double pmtTime,
- double pmtPedestal, double pmtEnergy,
- float[] amplitude, float[] time)
- throws AAtlantisException
- {
- double tdiv = 0.0;
- int lookup = 0;
- double localTime = 0.0;
- double xpulse = 0.0;
-
- // need to get "multiple" parameter ( = number of values in adcCounts
- // for each cell - adcCounts.length), shall be the same for all the
- // cells - taking the length of the first array (for the first cell)
- // no NullPointer or ArrayIndexBound checks are necessary here as this
- // method shall only be called when the relevant data is available
- double centerOfSamples = (adcCounts[0].length + 1.0) / 2.0;
-
- tdiv = time[1] - time[0];
- localTime = (xTime - centerOfSamples) * 25.0 - pmtTime;
- lookup = (int) ((localTime - time[0]) / tdiv);
-
- if(lookup < 0)
- {
- lookup = 0;
- }
- if(lookup >= NUMBER_OF_LOOKUP_VALUES - 1)
- {
- lookup = NUMBER_OF_LOOKUP_VALUES - 2; // -1 was off by 1
- }
-
- try
- {
- if(lookup == 0 || lookup == NUMBER_OF_LOOKUP_VALUES - 2)
- {
- xpulse = amplitude[lookup];
- }
- else
- {
- xpulse = amplitude[lookup] + ((amplitude[lookup + 1] -
- amplitude[lookup]) / tdiv) * (localTime - time[lookup]);
- }
- }
- catch(ArrayIndexOutOfBoundsException ex)
- {
- String m = "AMBTSData.getPhysicsPulseShape():\n" +
- " lookup index out of bound: lookup = " + lookup;
- throw new AAtlantisException(m);
- }
- return (xpulse * pmtEnergy) + pmtPedestal;
-
- } // getPhysicsPulseShape() ---------------------------------------------
-
-
-
- /**
- * Utility method APulseShapePlot.plotRealPulseShapes() is called from
- * here.
- * Physics pulse is calculated here: getPhysicsPulseShape().
- * This method is called from APickInteraction via ACalorimeterData
- * which defines abstract plotPulseShapes().
- * Method more or less copied & pasted from ATILEData, but here is
- * for just one channel.
- *
- * @param index int
- */
- public void plotPulseShapes(int index)
- {
- if(pulseShapesDataAvailable)
- {
- String title = CALORIMETER_NAME + " cell index: " + index;
-
- // one channel for MBTS
- int[][] adcCountsLocal = new int[][] { adcCounts[index] };
-
- if(super.checkADCCountsAvailability(adcCountsLocal))
- {
- // adc counts are available
- logger.debug(CALORIMETER_NAME + " adc counts (digits) are " +
- "available for pulse shapes plots for this cell.");
- }
- else
- {
- AOutput.append("\nADC counts are not available for this cell, " +
- "can't plot pulse shapes.", ALogInterface.WARNING);
- return;
- }
-
-
- // step - starting from 1, need to get step numbers within
- // number of ADC samples (adcCounts[0].length)
- double step = (adcCounts[0].length - 1) / (float) NUMBER_OF_LOOKUP_VALUES;
- double[][] realPulse = new double[1][NUMBER_OF_LOOKUP_VALUES]; // 1 channel
- double d = 1.0;
-
- // by zdenek 2008-12-02
- // DPD (slimed version of ESD) sometimes don't have cellPedestal
- // for a cell (the tag exists, values are there, but are 0). check
- // if pedestal is 0 and if so, take as pedestal value the first
- // adc count digit
- float cellPedestalLocal = cellPedestal[index];
- if(cellPedestalLocal == 0.0f)
- {
- logger.debug("MBTS cellPedestal is not available (i.e. " +
- "are 0.0f), using first adcCount digit as pedestal.");
- cellPedestalLocal = adcCounts[index][0];
- }
-
- try
- {
- for(int i = 0; i < NUMBER_OF_LOOKUP_VALUES; i++)
- {
- d += step;
- realPulse[0][i] =
- this.getPhysicsPulseShape(d, cellRawTime[index],
- cellPedestalLocal,
- cellRawAmplitude[index],
- ACalorimeterRPSPLT.TILE_AMPLITUDE,
- ACalorimeterRPSPLT.TILE_TIME);
- }
- }
- catch(AAtlantisException aaex)
- {
- AOutput.append(aaex.getMessage(), ALogInterface.WARNING);
- return;
- }
-
- APulseShapePlot.plotRealPulseShapes(adcCountsLocal, realPulse,
- step, null, title);
- }
- else
- {
- logger.warn(CALORIMETER_NAME + " plotPulseShapes() method called, " +
- "but data is not available.");
- return;
- }
-
- } // plotPulseShapes() --------------------------------------------------
-
-
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/data/AMDTData.java b/graphics/AtlantisJava/src/atlantis/data/AMDTData.java
deleted file mode 100755
index 0074b2c5a16..00000000000
--- a/graphics/AtlantisJava/src/atlantis/data/AMDTData.java
+++ /dev/null
@@ -1,338 +0,0 @@
-package atlantis.data;
-
-import atlantis.event.*;
-import atlantis.globals.AGlobals;
-import atlantis.graphics.ACoord;
-import atlantis.utils.AAtlantisException;
-import atlantis.utils.AHashMap;
-import atlantis.utils.AIdHelper;
-import atlantis.utils.ALogger;
-import atlantis.utils.AMath;
-
-public class AMDTData extends AMuonHitData
-{
- protected float[] driftR;
- protected float[] length;
- private static final int BARREL = 1;
-
- private static ALogger logger = ALogger.getLogger(AMDTData.class);
-
- public String getParameterGroup()
- {
- return "MDT";
- }
-
- public String getName()
- {
- return "MDT";
- }
-
- public String getNameScreenName()
- {
- return "MDT";
- }
-
- AMDTData(AHashMap p, AEvent e)
- {
- super(p,e);
- driftR = p.getFloatArray("driftR");
- length = p.getFloatArray("length");
- // removed the fudge (CT 27/7/2004), and replaced with another
- // for(int i=0; i<numData; i++)
- // driftR[i]*=500./700.;
- for (int i = 0; i < numData; i++)
- if (driftR[i] > 1.46)
- driftR[i] = (float) 1.46; // don't go out of the drifttube !
- }
-
- protected int getStation(int index)
- {
- try {
- String stationName = AIdHelper.stationName(id[index]);
-
- if (stationName.charAt(1) == 'I') {
- return 0;
- } else if (stationName.charAt(1) == 'E') {
- return 1;
- } else if (stationName.charAt(1) == 'M') {
- return 2;
- } else if (stationName.charAt(1) == 'O') {
- return 3;
- }
- } catch (AAtlantisException e) {
- logger.error("Problem decoding MDT identifier", e);
- }
-
- return 0;
- }
-
- protected int getSub(int index)
- {
- try {
- if (AIdHelper.stationName(id[index]).charAt(0) == 'B') {
- return 1;
- } else if (AIdHelper.stationEta(id[index]) < 0) {
- return 0;
- } else {
- return 2;
- }
- } catch (AAtlantisException e) {
- logger.error("Problem decoding MDT identifier", e);
- }
-
- return 1;
- }
-
- public int getSector(int index)
- {
- try {
- String stationName = AIdHelper.stationName(id[index]);
-
- if (stationName.charAt(2) == 'L') {
- return 2 * (AIdHelper.stationPhi(id[index]) - 1);
- } else {
- return 2 * (AIdHelper.stationPhi(id[index]) - 1) + 1;
- }
- } catch (AAtlantisException e) {
- logger.error("Problem decoding MDT identifier", e);
- }
-
- return 0;
- }
-
- protected boolean getMeasuresPhi(int index)
- {
- return false;
- }
-
- protected void applyCuts()
- {
- super.applyCuts();
- if (parameterStore.get("CutsATLAS", "CutPhi").getStatus())
- cutPhi(phi, getDPhi());
- cutEta(rho, z);
- }
-
- // used to make phi cut
-
- private float[] getDPhi()
- {
- // only roughly correct for some special sectors
- // must create all
- float[] dphi = new float[numData];
-
- // need only fill for those in draw list
- for (int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
-
- dphi[list] = (float) Math.abs(Math.atan2(length[list] / 2., rho[list]));
- }
- return dphi;
- }
-
- public String getHitInfo(int index)
- {
- int simpleOutput = AGlobals.instance().getSimpleOutput();
- if(simpleOutput>0) return getNameScreenName()+" index: " + index+"\n"+
- AMath.RHO+" = "+String.format("%.3f",rho[index])+"\n "+
- "z = " + String.format("%.3f",z[index]) + " cm\n"+
- AMath.PHI+" = "+String.format("%.3f",Math.toDegrees(phi[index]))+AMath.DEGREES;
-
- String temp = getNameScreenName() + " (id: " + identifier[index] +
- " index: " + index + ")\n " +
- AMath.RHO + " = " + String.format("%.3f",rho[index]) + " cm" + "\n " +
- AMath.PHI + " = " + String.format("%.3f",Math.toDegrees(phi[index])) +
- AMath.DEGREES + " (" + String.format("%.3f",phi[index]) + " rad)\n " +
- "z = " + String.format("%.3f",z[index]) + " cm\n " +
- "driftR = " + String.format("%.3f",driftR[index]) + " cm";
- if (sector[index] != -1)
- {
- temp += "\n sector = " + sector[index];
- }
-
- return temp;
- }
-
- private void makeDrawListYX()
- {
- int mode = parameterStore.get("YX", "Mode").getI();
-
- if (mode > 0 && mode < 5)
- {
- numDraw = 0;
- }
- else
- {
- makeDrawList();
- if (mode == 0)
- cut(" Barrel ", sub, "==", BARREL);
- else
- {
- cut(" Endcaps", sub, "!=", BARREL);
- cut(" Station", station, "==", mode - 5);
- }
- }
- }
-
- private void makeDrawListFZ()
- {
- int mode = parameterStore.get("FZ", "Mode").getI();
-
- if (mode > 0 && mode < 4)
- {
- numDraw = 0;
- }
- else
- {
- makeDrawList();
- if (mode == 0)
- cut(" Endcaps", sub, "!=", BARREL);
- else
- {
- cut(" Barrel ", sub, "==", BARREL);
- if (mode == 4)
- cut(" Station", station, "<=", mode - 3);
- else
- cut(" Station", station, "==", mode - 3);
- }
- }
- }
-
- protected ACoord getYXUser()
- {
- return getYXUser(0);
- }
-
- private ACoord getYXUser(int flag)
- {
- makeDrawListYX();
- int numPieces = 13;
- double[][][] hv = new double[2][numDraw][];
- int[] index = new int[numDraw];
-
- for (int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
- double r = rho[list];
- double cosPhi = Math.cos(phi[list]);
- double sinPhi = Math.sin(phi[list]);
- double phiM = Math.rint(phi[list] / AMath.PI_BY_8) * AMath.PI_BY_8;
- double cosPhiM = Math.cos(phiM);
- double sinPhiM = Math.sin(phiM);
- double d = length[list] / 2.;
- double x = r * cosPhi;
- double y = r * sinPhi;
-
- hv[0][i] = AMath.splitLineIntoPieces(new double[] { x + d * sinPhiM, x - d * sinPhiM }, numPieces);
- hv[1][i] = AMath.splitLineIntoPieces(new double[] { y - d * cosPhiM, y + d * cosPhiM }, numPieces);
- index[i] = list;
- }
- return new ACoord(hv, index, this, ACoord.POLYLINES);
- }
-
- protected ACoord getFRUser()
- {
- return getYXUser(1).convertYXToFR().includePhiWrapAround("FR");
- }
-
- protected ACoord getRZUser()
- {
- makeDrawList();
- int[] sign = new int[numDraw];
- double phiMid = Math.toRadians(parameterStore.get("RZ", "Phi").getD());
-
- for (int i = 0; i < numDraw; i++)
- {
- double phiDiff = Math.abs(phi[listdl[i]] - phiMid);
-
- sign[i] = -1;
- if (phiDiff < Math.PI / 2. || phiDiff > 3 * Math.PI / 2.)
- sign[i] = 1;
- }
- return getXZRZUser(sign);
- }
-
- protected ACoord getXZUser()
- {
- makeDrawList();
- cutMuonSector(sector);
- int[] sign = new int[numDraw];
- int sect=(int)Math.round(parameterStore.get("XZ", "Phi").getD() / 22.5);
-
- for (int i = 0; i < numDraw; i++)
- {
- sign[i] = 1;
- if (sector[listdl[i]] != sect)
- sign[i] = -1;
- }
- return getXZRZUser(sign);
- }
-
- protected ACoord getXZRZUser(int[] sign)
- {
- // int muonMode=APar.get("Data.MDT").getI();
- int muonMode = parameterStore.get("MDT", "Mode").getI();
- int numPoints;
-
- if (muonMode == 0) // circles
- numPoints = 48;
- else
- numPoints = 2; // lines
-
- double[][][] hv = new double[2][numDraw][numPoints];
- int[] index = new int[numDraw];
-
- for (int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
- double rC = sign[i] * getSectorRho(sector[list], rho[list], phi[list]);
- double zC = z[list];
- double d = driftR[list];
-
- if (muonMode == 0)
- { // circles
- for (int j = 0; j < numPoints; j++)
- {
- hv[0][i][j] = zC + d * Math.cos(Math.PI * 2 * j / (numPoints - 1));
- hv[1][i][j] = rC + d * Math.sin(Math.PI * 2 * j / (numPoints - 1));
- }
- }
- else
- { // lines
- double radius = Math.sqrt(rC * rC + zC * zC);
- double sinTheta = rC / radius;
- double cosTheta = zC / radius;
-
- hv[0][i][0] = zC + d * sinTheta;
- hv[1][i][0] = rC - d * cosTheta;
- hv[0][i][1] = zC - d * sinTheta;
- hv[1][i][1] = rC + d * cosTheta;
- }
- index[i] = list;
- }
- return new ACoord(hv, index, this, ACoord.POLYLINES);
- }
-
- protected ACoord getFZUser()
- {
- makeDrawListFZ();
- double[][][] hv = new double[2][numDraw][2];
- int[] index = new int[numDraw];
-
- for (int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
-
- index[i] = list;
- hv[0][i][0] = z[list];
- hv[0][i][1] = z[list];
- double deltaPhi = Math.atan2(length[list] / 2., rho[list]);
-
- hv[1][i][0] = Math.toDegrees(phi[list] - deltaPhi);
- hv[1][i][1] = Math.toDegrees(phi[list] + deltaPhi);
- }
- return new ACoord(hv, index, this, ACoord.POLYLINES).includePhiWrapAround("FZ");
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/data/AMuonData.java b/graphics/AtlantisJava/src/atlantis/data/AMuonData.java
deleted file mode 100755
index 368a6a03988..00000000000
--- a/graphics/AtlantisJava/src/atlantis/data/AMuonData.java
+++ /dev/null
@@ -1,95 +0,0 @@
-package atlantis.data;
-
-import atlantis.event.*;
-import atlantis.globals.AGlobals;
-import atlantis.utils.AHashMap;
-import atlantis.utils.AMath;
-import atlantis.utils.A4Vector;
-
-/**
- * Reconstructed Muon
- */
-public class AMuonData extends AHelixAODData
-{
- private float[] chi2;
-
- AMuonData(AHashMap p, AEvent e)
- {
- super(p,e);
- chi2=p.getFloatArray("chi2");
- }
-
- public String getParameterGroup()
- {
- return "Muon";
- }
-
- public float getchi2(int index)
- {
- return chi2[index];
- }
-
- public A4Vector get4Vector(int num, int[] list)
- {
- A4Vector sum = new A4Vector();
- for (int i = 0; i < num; ++i)
- {
- int k = list[i];
- A4Vector start = new A4Vector();
- start.setPtEtaPhiM(pT[k],eta[k],phi[k],0.1057);
- sum.add(start);
- }
-
- return sum;
- }
-
- protected void applyCuts()
- {
- super.applyCuts();
- cut("CutsObjects", "MuonPt", " |ET|", pT);
- cut("CutsObjects", "Muonchi2", " |chi2|", chi2);
- }
-
- public String getHitInfo(int index)
- {
- int simpleOutput = AGlobals.instance().getSimpleOutput();
- if(simpleOutput>0){
- String output = getNameScreenName()+" index: " + index;
- if(simpleOutput==1 || simpleOutput==3)
- output+= "\n PT="+String.format("%.3f",pT[index])+" GeV\n "+
- AMath.ETA+" = "+String.format("%.3f",eta[index])+"\n "+
- AMath.PHI+" = "+String.format("%.3f",Math.toDegrees(phi[index]))+AMath.DEGREES;
- if(simpleOutput==2 || simpleOutput==3)
- output+= "\n Px="+String.format("%.3f",pT[index]*Math.cos(phi[index]))+" GeV "+
- "\n Py="+String.format("%.3f",pT[index]*Math.sin(phi[index]))+" GeV "+
- "\n Pz="+String.format("%.3f",pT[index]*Math.sinh(eta[index]))+" GeV ";
- return output;
- }
-
- String k = this.getStoreGateKey();
- String sgKey = k != null ? k : "n/a";
- StringBuffer msg = new StringBuffer(getNameScreenName());
- msg.append(" (id: " + id[index] + " index: " + index + ")");
- msg.append("\n storegate key: ");
- msg.append(sgKey);
- msg.append("\n PT = ");
- msg.append(String.format("%.3f",pT[index]));
- msg.append(" GeV\n P = ");
- msg.append(String.format("%.3f",Math.abs(pT[index]/Math.cos(AMath.lambda(eta[index])))));
- msg.append(" GeV\n ");
- msg.append(AMath.ETA);
- msg.append(" = ");
- msg.append(String.format("%.3f",eta[index]));
- msg.append("\n ");
- msg.append(AMath.PHI);
- msg.append(" = ");
- msg.append(String.format("%.3f",Math.toDegrees(phi[index])));
- msg.append(AMath.DEGREES);
- msg.append(" (" + String.format("%.3f",phi[index]) + " rad)");
- msg.append("\n chi2 = ");
- msg.append(chi2[index]);
-
- return msg.toString();
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/data/AMuonHitData.java b/graphics/AtlantisJava/src/atlantis/data/AMuonHitData.java
deleted file mode 100644
index 85717f5fa90..00000000000
--- a/graphics/AtlantisJava/src/atlantis/data/AMuonHitData.java
+++ /dev/null
@@ -1,192 +0,0 @@
-package atlantis.data;
-
-import atlantis.event.*;
-import atlantis.globals.AGlobals;
-import atlantis.utils.*;
-import atlantis.parameters.*;
-
-public abstract class AMuonHitData extends AHitData {
-
- protected float[] rho;
- protected float[] phi;
- protected float[] x;
- protected float[] y;
- protected float[] z;
- protected int[] sector;
- protected int[] station;
- protected boolean[] measuresPhi;
-
- public static final int DOES_NOT_MEASURE_PHI=0;
- public static final int MEASURES_PHI=1;
-
- // remove when go to compact id ( if compact id was in a sensible form)
- String[] identifier;
-
- AMuonHitData(AHashMap p, AEvent e) {
- super(p,e);
- x=p.getFloatArray("x");
- y=p.getFloatArray("y");
- z=p.getFloatArray("z");
- rho=new float[numData];
- phi=new float[numData];
- for(int i=0; i<numData; ++i) {
- rho[i]=(float)Math.sqrt(x[i]*x[i]+y[i]*y[i]);
- phi[i]=(float)Math.atan2(y[i], x[i]);
- if(phi[i]<0.) phi[i]+=AMath.TWO_PI;
- }
- identifier=p.getStringArray("identifier");
- station=new int[numData];
- sector=new int[numData];
- measuresPhi=new boolean[numData];
- for(int i=0; i<numData; ++i) {
- // should be moved to AHitData
- sub[i]=getSub(i);
- sector[i]=getSector(i);
- station[i]=getStation(i);
- measuresPhi[i]=getMeasuresPhi(i);
- }
- }
-
- /**
- * Get the name used for associating this datatype/collection. For the
- * muon hits no storegate key is used.
- * @return
- */
- public String getFullName() {
- return getName();
- }
-
- protected int internalColor()
- {
- int numColorTypes = super.internalColor();
- int colorFunction = parameterStore.get(PARAMETER_GROUP, "ColorFunction").getI();
-
- if(colorFunction == numColorTypes + 1) // colour by Track Segment
- {
- colorBy(getSegments());
- }
- return numColorTypes + 1;
-
- } // internalColor() ----------------------------------------------------
-
-
- abstract protected int getStation(int index);
-
- abstract public int getSector(int index);
-
- abstract protected int getSub(int index);
-
- abstract protected boolean getMeasuresPhi(int index);
-
- protected String getSegments() {
- AEnumeratorParameter key = (AEnumeratorParameter) parameterStore.get("MuonSegment", "MuonSegmentCollections");
-
- return "MuonSegment" + key.getCurrentText();
- }
-
- public int getRZSign(int index) {
- double phiMid=Math.toRadians(parameterStore.get("RZ", "Phi").getD());
- double phiDiff=Math.abs(phi[index]-phiMid);
-
- int sign=-1;
- if(phiDiff<Math.PI/2.||phiDiff>3*Math.PI/2.)
- sign=1;
- return sign;
- }
-
- protected String getReconstructedTracks() {
- AData tracks = event.getTrackData("MuonTrack");
- if (tracks == null) {
- return null;
- } else {
- return tracks.getName() + tracks.getStoreGateKey();
- }
- }
-
- // get the distance of closest approach of the inifinite line representing the
- // drift tube axis to Z axis
- // Normal this is rho of the hit, but need not be for non standard modules
- // (e.g. near feet)
- static double getSectorRho(int sector, double rho, double phi) {
- return rho*Math.abs(Math.cos(phi-sector*AMath.PI_BY_8));
- }
-
- protected void applyCuts() {
- cutIndex();
- cutSimulatedTracks();
- cutReconstructedTracks();
- cutSegments();
- }
-
- // keep only muon hits in the input muon sectors
- protected void cutMuonSector(int[] sector) {
- AParameter p=parameterStore.get("XZ", "Phi");
-
- // display muon data when phi is in the middle of a sector
- if(p.getD() % 22.5 < 1e-2) {
- int sect=(int)Math.round((p.getD() % 360.) / 22.5);
-
- int num=0;
-
- for(int i=0; i<numDraw; i++) {
- int s=sector[listdl[i]];
-
- if(s==sect||s==sect-8||s==sect+8)
- listdl[num++]=listdl[i];
- }
- numDraw=num;
- } else {
- numDraw=0;
- }
- }
-
- public String getHitInfo(int index)
- {
- int simpleOutput = AGlobals.instance().getSimpleOutput();
- if(simpleOutput>0) return getNameScreenName()+" index: " + index+"\n"+
- AMath.RHO+" = "+String.format("%.3f",rho[index])+"\n "+
- "z = " + String.format("%.3f",z[index]) + "cm\n"+
- AMath.PHI+" = "+String.format("%.3f",Math.toDegrees(phi[index]))+AMath.DEGREES;
-
- String temp = getNameScreenName() + " (id: " + identifier[index] + " index: " + index + ")" +
- "\n " + AMath.RHO + " = " + String.format("%.3f",rho[index]) + " cm" +
- "\n " + AMath.PHI + " = " + String.format("%.3f",Math.toDegrees(phi[index])) +
- AMath.DEGREES + " (" + String.format("%.3f",phi[index]) + " rad)" +
- "\n z = " + String.format("%.3f",z[index]) + " cm";
-
- if(sector[index]!=-1)
- {
- temp += "\n sector = " + sector[index];
- }
-
- return temp;
- }
-
- protected void setType() { //What is this doing??
- int[][] recon=event.getAssociationManager().get(getName(),getReconstructedTracks());
- for(int i=0; i<numData; i++) {
- if( (recon!=null&&recon[i]!=null))
- type[i]=1;
- else
- type[i]=0;
- }
- }
-
- /**
- * cut hits if connected/unconnected to reconstructed tracks
- */
- protected void cutReconstructedTracks()
- {
- int cutOption = parameterStore.get("CutsMuon", "HitsByRTr").getI();
- cutByAssociationTo(getReconstructedTracks(), getName(), cutOption);
- }
-
- /**
- * cut hits if connected/unconnected to reconstructed segments
- */
- protected void cutSegments()
- {
- int cutOption = parameterStore.get("CutsMuon", "HitsBySegment").getI();
- cutByAssociationTo(getSegments(), getName(), cutOption);
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/data/AMuonROIData.java b/graphics/AtlantisJava/src/atlantis/data/AMuonROIData.java
deleted file mode 100755
index 567f2f9cf5a..00000000000
--- a/graphics/AtlantisJava/src/atlantis/data/AMuonROIData.java
+++ /dev/null
@@ -1,34 +0,0 @@
-package atlantis.data;
-
-import atlantis.event.*;
-import atlantis.utils.AHashMap;
-
-/**
- *
- * Muon Region Of Interest
- *
- * @author Zdenek Maxa, Qiang Lu, Juergen Thomas
- */
-public class AMuonROIData extends AROIData
-{
- AMuonROIData(AHashMap p, AEvent e)
- {
- super(p,e);
- } // AMuonROIData() ------------------------------------------------------
-
- public String getParameterGroup()
- {
- return "MuonROI";
- } // getParameterGroup() ------------------------------------------------
-
- public String getName()
- {
- return "MuonROI";
- } // getName() ----------------------------------------------------------
-
- public String getNameScreenName()
- {
- return "MuonROI";
- } // getNameScreenName() ------------------------------------------------
-
-} // class AMuonROIData ======================================================
diff --git a/graphics/AtlantisJava/src/atlantis/data/AMuonSegmentData.java b/graphics/AtlantisJava/src/atlantis/data/AMuonSegmentData.java
deleted file mode 100755
index 96adc598bcf..00000000000
--- a/graphics/AtlantisJava/src/atlantis/data/AMuonSegmentData.java
+++ /dev/null
@@ -1,56 +0,0 @@
-package atlantis.data;
-
-import atlantis.event.*;
-import atlantis.projection.AProjectionYX;
-import atlantis.utils.AHashMap;
-
-/**
- *
- * @author Eric Jansen
- */
-public class AMuonSegmentData extends ASegmentData {
-
- /** Creates a new instance of AMuonSegmentData */
- AMuonSegmentData(AHashMap p, AEvent e) {
- super(p,e);
- String assocKey = getName() + getStoreGateKey();
- event.getAssociationManager().add(new AAssociation(assocKey, "MDT", numHits, hits, event));
- event.getAssociationManager().add(new AAssociation(assocKey, "RPC", numHits, hits, event));
- event.getAssociationManager().add(new AAssociation(assocKey, "TGC", numHits, hits, event));
- event.getAssociationManager().add(new AAssociation(assocKey, "CSC", numHits, hits, event));
- }
-
- public void makeDrawList() {
- super.makeDrawList();
-
- if (currentProjection instanceof AProjectionYX) {
- if (parameterStore.get("YX", "Mode").getI() != AProjectionYX.MODE_STANDARD) {
- numDraw = 0;
- } else {
- int num = 0;
- for (int i=0; i<numDraw; i++) {
- int j = listdl[i];
-
- // Anything beyond z=13m or below r=6.5m is endcap
- if (Math.sqrt(x[j]*x[j] + y[j]*y[j]) > 650.
- && Math.abs(z[j]) < 1300.) {
- listdl[num++] = j;
- }
- }
- numDraw = num;
- }
- }
- }
-
- public String getParameterGroup() {
- return "MuonSegment";
- }
-
- public String getName() {
- return "MuonSegment";
- }
-
- public String getNameScreenName() {
- return "MuonSegment";
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/data/AMuonTrackData.java b/graphics/AtlantisJava/src/atlantis/data/AMuonTrackData.java
deleted file mode 100644
index cd768ea2a38..00000000000
--- a/graphics/AtlantisJava/src/atlantis/data/AMuonTrackData.java
+++ /dev/null
@@ -1,200 +0,0 @@
-package atlantis.data;
-
-import atlantis.event.*;
-import atlantis.canvas.AWindow;
-import atlantis.graphics.ACoord;
-import atlantis.graphics.AGraphics;
-import atlantis.parameters.AParameterUtilities;
-import atlantis.projection.AProjection;
-import atlantis.projection.AProjection2D;
-import atlantis.projection.AProjectionVP;
-import atlantis.utils.AHashMap;
-import atlantis.utils.AMath;
-import atlantis.utils.AAtlantisException;
-import atlantis.utils.ALogger;
-
-
-/**
- *
- * @author Eric Jansen
- */
-public class AMuonTrackData extends ATrackData {
-
- private static ALogger logger = ALogger.getLogger(AMuonTrackData.class);
-
- protected float[] phi0;
- protected float[] pT;
- protected float[] cotTheta;
- protected int[] author;
-
- /** Creates a new instance of AMuonTrackData */
- AMuonTrackData(AHashMap p, AEvent e) throws AAtlantisException {
- super(p,e);
- String assocKey = getName() + getStoreGateKey();
- if(p.get("numHits") != null) {
- int[] numHits = p.getIntArray("numHits");
- int[] hits = p.getIntArray("hits");
-
- event.getAssociationManager().add(new AAssociation(assocKey, "MDT", numHits, hits,event));
- event.getAssociationManager().add(new AAssociation(assocKey, "RPC", numHits, hits,event));
- event.getAssociationManager().add(new AAssociation(assocKey, "TGC", numHits, hits,event));
- event.getAssociationManager().add(new AAssociation(assocKey, "CSC", numHits, hits,event));
- }
-
- phi0 = p.getFloatArray("phi0");
- pT = p.getFloatArray("pt");
- cotTheta = p.getFloatArray("cotTheta");
- author = p.getUnsureIntArray("trackAuthor");
- }
-
- public String getParameterGroup() {
- return "MuonTrack";
- }
-
- public String getName() {
- return "MuonTrack";
- }
-
- public String getNameScreenName() {
- return "MuonTrack";
- }
-
- protected void finalizeConstruction() {
- super.finalizeConstruction();
-/*
- // needs ZVTx
- h = new AHelix[numData];
- for(int i = 0; i < numData; ++i) {
- double p = AMath.getPFromPttL(pT[i], cotTheta[i]);
- double xVtx = parameterStore.get("Event", "XVtx").getD();
- double yVtx = parameterStore.get("Event", "YVtx").getD();
- double phiVtx = Math.atan2(yVtx, xVtx);
- double rho = Math.sqrt(xVtx * xVtx + yVtx * yVtx);
- double d0 = -rho * Math.sin(phi0[i] - phiVtx);
- // correct for average energy loss
- double pTCorrected = pT[i] * (p + 3.7) / p;
-
- h[i] = new AHelix((float)d0,
- (float)(parameterStore.get("Event", "ZVtx").getD()),
- (float)Math.toDegrees(phi0[i]), cotTheta[i], (float)pTCorrected);
- //calculatePhiCorrection(i);
- }
-*/
- }
-
- public void draw(AWindow window, AGraphics ag, AProjection2D projection)
- {
- if(projection instanceof AProjectionVP
- && parameterStore.get(PARAMETER_GROUP, "DrawnAs").getI() != DRAW_NEWHELIX)
- {
- ag.draw(window.calculateDisplay(getVPUser(window, projection)));
- }
- else
- super.draw(window, ag, projection);
- }
-
- protected ACoord getVPUser(AWindow window, AProjection projection)
- {
- makeDrawList();
- double[][][] hv = new double[2][2*numDraw][];
- int[] index = new int[2 * numDraw];
- int num = 0;
- for (int j=0; j<numDraw; j++) {
- int list = listdl[j];
- ADHelix dhelix = new ADHelix(h[list]);
- double s1 = dhelix.getAStart();
- double s2 = 179.;
- // hardwire projection.getMinRho() == 2. for now
- s1 = dhelix.intersectWithRadialCylinder(((AProjection2D)projection).getMinRho(), s1, s2);
- double sEnd = dhelix.intersectWithCylinder(true, AProjectionVP.getRhoVPlot(),
- true, AProjectionVP.getZVPlot());
- s2 = Math.max(Math.min(s2, sEnd), s1);
- // if the whole helix is to be drawn (which are unusual
- // helices, shorten it a little to avoid wraparound problems
- if (s1 == 0. && s2 == 180.) s2 = 179.;
-
- if (parameterStore.get("VP", "ShortV").getStatus() && !parameterStore.get("Data", "S3D").getStatus()) {
- s1 = s2 - parameterStore.get("VP", "ShortV").getD() * (s2 - s1);
- }
-
- // by Zdenek:
- // if this condition is not entered, hv array containing coordinates
- // remains empty and Atlantis will crash with NullPointerException
- // in AWindow.calculateUser(ACoord user)
- // magic constants here (e.g. s2) need to be understood and this
- // method best reimplemented
- for(int sign=-1; sign<=1; sign+=2) {
- // ugly must change structure at some point
- AProjectionVP.sign = sign;
- ACoord pointsOnHelix;
- if (s2 > s1) {
- pointsOnHelix = dhelix.drawHelix(window, (AProjection2D) projection, s1, s2);
- hv[0][num] = pointsOnHelix.hv[0][0];
- hv[1][num] = pointsOnHelix.hv[1][0];
- } else {
- hv[0][num] = new double[0];
- hv[1][num] = new double[0];
- }
- index[num] = list;
- num++;
- }
- }
-
- // by Zdenek:
- // condition to prevent NullPointerException in AWindow.calculateUser()
- // see previous comment ...
- // this condition should be removed completely 'bug in helix'
- // problem is understood
- ACoord coord = null;
- if(hv[0].length > 0 && hv[0][0] == null)
- {
- logger.warn("AMuonTrackData.getVPUser(): \"" + this.getName() +
- ":" + this.getStoreGateKey() + "\" can't be drawn in eta-phi");
- coord = ACoord.NO_DATA;
- }
- else
- {
- coord = new ACoord(hv, index, this, ACoord.SMOOTH_POLYLINES);
- }
- return window.calculateUser(coord).includePhiWrapAround(projection.getName());
- }
-
-
-
- private float[] getEta()
- {
- float[] eta = new float[numData];
- if(polylinedTrack)
- {
- for(int i = 0; i < numData; i++)
- {
- if(h!=null && h[i]!=null) eta[i] = (float) h[i].eta();
- else eta[i] = (float) AParameterUtilities.eta(z[i][0], rho[i][0]);
- }
- }
- else
- {
- for(int i = 0; i < numData; i++)
- {
- eta[i] = (float) h[i].eta();
- }
-
- }
-
- return eta;
- }
-
-
-
- protected void applyCuts() {
- cutIndex();
- cut("CutsInDet", "Pt", " |Pt|", pT);
- cut("CutsMuon", "Pt", " |Pt|", pT);
- cut("CutsInDet", "trackAuthor", " Author", author);
- cutPhi(phi0);
- if(parameterStore.get("CutsATLAS", "CutEta").getStatus())
- {
- cutEta(getEta());
- }
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/data/AOldHelix.java b/graphics/AtlantisJava/src/atlantis/data/AOldHelix.java
deleted file mode 100755
index a3f490c5717..00000000000
--- a/graphics/AtlantisJava/src/atlantis/data/AOldHelix.java
+++ /dev/null
@@ -1,338 +0,0 @@
-package atlantis.data;
-
-import atlantis.globals.AGlobals;
-import atlantis.parameters.APar;
-import atlantis.parameters.AParameter;
-import atlantis.utils.AMath;
-import atlantis.utils.A3Vector;
-import atlantis.utils.ALogger;
-
-import static java.lang.Math.PI;
-
-/**
- * This is a convenience class to group together the six helix parameters.
- */
-public class AOldHelix {
-
- private final static ALogger logger = ALogger.getLogger(AOldHelix.class);
-
- private static final int SIZE=5;
- private static final boolean DEBUG = false;
- private static final APar parameterStore = APar.instance();
- // C - constant depending on the magnetic field, constant proportional
- // to curvature in the magnetic field
- private static final double C;
- static {
- AParameter curvatureParameter = parameterStore.get("Event", "Curvature");
- if (curvatureParameter!=null) {
- C = curvatureParameter.getD();
- }
- else {
- C = 100/0.6;;
- logger.error("Curvature parameter not found, defaulting to "+C);
- }
- }
-
- // These fields are public but final so cannot be altered.
- /** Distance between circle and (0,0) at point of closest approach (PCA). */
- public final double d0;
- /** Z of circle at PCA. */
- public final double z0;
- /** phi0 of track at PCA [degrees] */
- public final double phi0;
- /** Dip of track = Pz/pTTrack =0.5 * ( E - 1/E ) : constant along the helix */
- public final double tL;
- /** Transverse momentum * charge. */
- public final double pT;
- /** ln( Pz/pTTrack + SQRT[(Pz/pTTrack)**2 +1 ] */
- public final double eta;
- /** Angle between (0,0) and vertex as seen from the circle center [degrees]?
- * For helices starting at PCA, startPhi=0. This is the case for reconstructed
- * helices that are not yet associated to a secondary vertex or are
- * drawn to PCA.
- * Mutable because it is changed when tracks are used to fit a vertex. */
- double startPhi;
-
- // negative end vertex means none exits
- double rhoVertex = 0.0;
- private double rhoEndVertex = -1.0;
-
- private int numHits;
-
- double[][] cov=null;
-
- AOldHelix() {
- this(0, 0, 0, 0, 0);
- };
-
- /** Standard Helix constructor without end vertex */
- AOldHelix(float rhoVertex, float phiVertex, float zVertex,
- float pTTrack, float phiTrack, float etaTrack, int charge ) {
- this(rhoVertex,phiVertex,zVertex,pTTrack,phiTrack,etaTrack,charge,-1);
- }
-
- /**
- * Standard Helix constructor with end vertex.
- *
- * Note: this method is not called when creating helix representation of
- * reconstructed InDet tracks, but is called for simulated InDet tracks.
- *
- * @param rhoVertex rho of vertex from which track starts
- * @param phiVertex phi of vertex from which track starts
- * @param zVertex Z of vertex from which track starts
- * @param pTTrack transverse track momentum > 0
- * @param phiTrack phi of track seen from vertex
- * @param etaTrack eta = -ln(tg(theta/2)), theta = arctg(pTTrack/Pz) = 2*arctg( e**(-eta))
- * @param charge charge = +1 or -1
- * @param rhoEndVertex
- */
- AOldHelix(float rhoVertex, float phiVertex, float zVertex,
- float pTTrack, float phiTrack, float etaTrack, int charge, float rhoEndVertex ) {
- /*
- * Derived:
- * rC = signed radius of circle (positive for positive particle, which
- * loops in the clockwise direction in the standard xy projection,
- * given that Bz is positive in the ATLAS solenoid)
- * xC = x position of center of circle
- * yC = y position of center of circle
- * E = E**eta
- * charge=1 if icode>=0 else charge=-1
- *
- * Calculation:
- * rC = C*pTTrack C = 100./0.6
- * xC = rhoVertex*cos(phiVertex) + rC*sin(phiTrack)
- * yC = rhoVertex*sin(phiVertex) - rC*cos(phiTrack)
- * tl = Pz/pTTrack = 0.5 * ( E - 1/E )
- * d0 = rC - sqrt(xC*xC + yC*yC)
- * startPhi = pi/2 - phiTrack + atan2(yC,xC) modify startPhi to: -pi/2 < startPhi < pi/2
- * z0 = zVertex - rC*startPhi*tl
- * phi0 = phiTrack + startPhi
- * pCharge = charge*pTTrack
- * Change startPhi and phi0 from radians to degrees.
- *
- */
- double rC=C*pTTrack*charge;
- if (DEBUG) logger.debug("AOldHelix: charge, rC = "+charge+", "+rC);
- double xC=rhoVertex*Math.cos(phiVertex)+rC*Math.sin(phiTrack);
- double yC=rhoVertex*Math.sin(phiVertex)-rC*Math.cos(phiTrack);
- if (DEBUG) logger.debug("AOldHelix: xCyC"+" "+xC+" "+yC);
- double e=Math.exp(etaTrack);
- tL=0.5*(e-1./e);
- eta = etaTrack;
- d0=rC-charge*Math.sqrt(xC*xC+yC*yC);
- phiTrack = (float) AMath.nearestPhiRadians(phiTrack);
- double temp=Math.atan2(yC, xC);
- temp = AMath.nearestPhiRadians(temp);
- double startPhiRad=charge*(PI/2)-phiTrack+temp;
- startPhiRad = AMath.nearestPhiRadians(startPhiRad, 0);
- z0=zVertex-rC*startPhiRad*tL;
- phi0=Math.toDegrees(phiTrack+startPhiRad);
- startPhi=charge*Math.toDegrees(startPhiRad);
- pT=charge*pTTrack;
-
- // keep rhoEndVertex for simulated tracks with a daughter
- this.rhoVertex=rhoVertex;
- this.rhoEndVertex = rhoEndVertex;
- }
-
- /**
- * Construct AOldHelix object.
- * @param d0
- * @param z0
- * @param phi0 [degrees]
- * @param tL
- * @param pT
- */
- AOldHelix(float d0, float z0, float phi0,
- float tL, float pT) {
- this.d0=d0;
- this.z0=z0;
- this.phi0=AMath.nearestPhiDegrees(phi0);
- this.tL=tL;
- this.eta = calculateEta(this.tL);
- this.pT=pT;
- startPhi=0.;
- }
-
- AOldHelix(float d0, float z0, float phi0,
- float tL, float pT, int numHits) {
- this(d0, z0, phi0, tL, pT);
- this.numHits=numHits;
- }
-
- AOldHelix(float d0, float z0, float phi0,
- float tL, float pT, float[][] c) {
- this.d0=d0;
- this.z0=z0;
- this.phi0=phi0;
- this.tL=tL;
- this.eta = calculateEta(this.tL);
- this.pT=pT;
- this.startPhi=0.;
-
- cov=new double[c.length][];
- if(c.length!=SIZE)
- logger.error("Helix error "+c.length);
- for(int i=0; i<c.length; ++i) {
- if(c[i].length!=SIZE)
- logger.error("Helix error "+c.length);
- cov[i]=new double[c[i].length];
- }
- for(int i=0; i<c.length; ++i)
- for(int j=0; j<c[i].length; ++j)
- cov[i][j]=c[i][j];
- }
-
- AOldHelix(float d0, float z0, float phi0,
- float tL, float pT, int numHits, float[][] c) {
- this(d0, z0, phi0, tL, pT, c);
- this.numHits=numHits;
- }
-
- public double[] getPar() {
- return new double[] {d0, z0, Math.toRadians(phi0), tL, 1./pT};
- }
-
- public double[][] getCov() {
- return cov;
- }
-
- public double getRhoEndVertex(){
- return rhoEndVertex;
- }
-
-/**
- * Set Phi start so that the track will originate from the point on the
- * reconstructed track in the YX plane which is closest to the point (Vx,Vy).
- * Only used when drawing tracks originating from a reconstructed vertex.
- */
- public void setPhiStartByXYPoint(double Vx, double Vy) {
- //construct a local super object to get the xC and yC numbers
- ADHelix Dh=new ADHelix(this);
- // do the calculation to find the starting angle
- double Xc=Dh.getxC();
- double Yc=Dh.getyC();
-
- double a=-1.*(Vx-Xc);
- double b=-1.*(Vy-Yc);
-
- double pTTrack=pT;
- double phiTrack=Math.toRadians(phi0);
-
- double charge=1;
- if(pTTrack<0.0) charge=-1.;
-
- double temp=Math.atan2(b, a);
- temp = AMath.nearestPhiRadians(temp);
- double sPhi=charge*(PI/2)-phiTrack+temp;
- sPhi = AMath.nearestPhiRadians(sPhi, 0);
- sPhi=charge*Math.toDegrees(sPhi);
- startPhi=Math.abs(sPhi);
- }
-
- public String toString() {
- int simpleOutput = AGlobals.instance().getSimpleOutput();
- if(simpleOutput>0){
- String output = "";
- if(simpleOutput==1 || simpleOutput==3)
- output+= "\n PT="+String.format("%.3f",Math.abs(pT))+" GeV\n "+
- AMath.ETA+" = "+String.format("%.3f",eta)+"\n "+
- AMath.PHI+" = "+String.format("%.3f",phi0)+AMath.DEGREES;
- if(simpleOutput==2 || simpleOutput==3)
- output+= "\n Px="+String.format("%.3f",Math.abs(pT)*Math.cos(Math.toRadians(phi0)))+" GeV "+
- "\n Py="+String.format("%.3f",Math.abs(pT)*Math.sin(Math.toRadians(phi0)))+" GeV "+
- "\n Pz="+String.format("%.3f",Math.abs(pT)*Math.sinh(eta))+" GeV "+
- "\n Charge = " + (int)(pT/Math.abs(pT));
- return output;
- }
-
- String s="";
- double f=1.;
-
- if(numHits>0)
- s+="\n numHits = "+numHits;
- // if(Math.abs(d0)<0.1) f=10000.;
- s+="\n d0 = "+String.format("%.3f",f*d0);
- if(cov!=null) s+=" "+AMath.PLUSMINUS+" "+String.format("%.3f",f*Math.sqrt(cov[0][0]));
- if(f>100)
- s+=" um";
- else
- s+=" cm";
- f=1.;
- // if(Math.abs(z0)<0.1) f=10000.;
- s+="\n z0 = "+String.format("%.3f",f*z0);
- if(cov!=null) s+=" "+AMath.PLUSMINUS+" "+String.format("%.3f",Math.sqrt(f*cov[1][1]));
- if(f>100)
- s+=" um";
- else
- s+=" cm";
-
- double zVtx = parameterStore.get("Event", "ZVtx").getD();
- //if(Math.abs(z0-zVtx) < 0.1) f=10000.;
- s+="\n |z0-zVtx| = "+String.format("%.3f",f*Math.abs(z0-zVtx));
- if(f>100)
- s+=" um";
- else
- s+=" cm";
-
- s+="\n phi0 = "+String.format("%.3f",phi0);
- if(cov!=null)
- {
- s += " " + AMath.PLUSMINUS + " " +
- String.format("%.3f",Math.toDegrees(Math.sqrt(cov[2][2]))) +
- AMath.DEGREES;
- }
- else
- {
- s += AMath.DEGREES;
-
- }
- s+= " (" + String.format("%.3f",Math.toRadians(phi0));
- if(cov != null)
- {
- s += " " + AMath.PLUSMINUS + " " +
- String.format("%.3f",Math.toRadians(Math.sqrt(cov[2][2]))) + " rad)";
- }
- else
- {
- s += " rad)";
- }
-
- s+="\n "+AMath.ETA+" = "+String.format("%.3f",eta);
- if(cov!=null) {
- // based on the relation between eta and ctgTheta
- double etaError = Math.sqrt(cov[3][3] / (tL * tL + 1.0));
- s+=" "+AMath.PLUSMINUS+" "+String.format("%.3f",etaError);
- }
- s+="\n tL = "+String.format("%.3f",tL);
- if(cov!=null) s+=" "+AMath.PLUSMINUS+" "+String.format("%.3f",Math.sqrt(cov[3][3]));
- s+="\n pT = "+String.format("%.2f",pT) + " GeV";
- if(cov!=null) {
- double sigmaPt=Math.abs(1./(Math.abs(1./pT)+Math.sqrt(cov[4][4]))-Math.abs(pT));
-
- s+=" "+AMath.PLUSMINUS+" "+String.format("%.3f",sigmaPt)+" GeV";
- }
- if(pT<0.)
- s+="\n p = "+String.format("%.2f",-AMath.getPFromPttL(pT,tL));
- else
- s+="\n p = "+String.format("%.2f",AMath.getPFromPttL(pT,tL));
- s+= " GeV";
-
- return s;
- }
-
- public A3Vector getP() {
- double pTrans=Math.abs(pT);
- double phi=Math.toRadians(phi0);
- return new A3Vector(pTrans*Math.cos(phi), pTrans*Math.sin(phi), pTrans*tL);
- }
-
- /** eta = -ln(tg theta/2), so eta = -ln(sqrt(ctgtheta*ctgtheta+1)-ctgtheta) */
- private static double calculateEta(double ctgTheta) {
- double eta;
- eta = -Math.log(Math.sqrt(ctgTheta * ctgTheta + 1.0) - ctgTheta);
- return eta;
- }
-
-}
-
diff --git a/graphics/AtlantisJava/src/atlantis/data/APDGTable.java b/graphics/AtlantisJava/src/atlantis/data/APDGTable.java
deleted file mode 100755
index 5fde73d3136..00000000000
--- a/graphics/AtlantisJava/src/atlantis/data/APDGTable.java
+++ /dev/null
@@ -1,107 +0,0 @@
-package atlantis.data;
-
-import atlantis.globals.AGlobals;
-import atlantis.utils.ALogger;
-import atlantis.utils.AUtilities;
-import atlantis.utils.xml.*;
-import java.util.*;
-import java.io.File;
-import java.io.InputStream;
-import org.w3c.dom.*;
-import javax.xml.parsers.*;
-
-/**
- * Read a PDG table from the file pdg.xml and provide
- * basic accessor functions to its particles
- */
-public final class APDGTable {
-
- //The logger
- private final static ALogger logger = ALogger.getLogger(APDGTable.class);
-
- //Wether to validate the XML document
- private final static boolean VALIDATION=true;
-
- //The particle table linked by PDG code
- private final static Map<Integer, AParticle> particles = new HashMap<Integer, AParticle>(100);
-
- //Always read in the Hashmap
- static {
- readPDG(APDGTable.getFileInCurrentUserThenAtlantisHome("configuration","pdg.xml"));
- }
-
- //Read in the PDG table from a file
- private static void readPDG(String fileName) {
- try {
- DocumentBuilderFactory factory=DocumentBuilderFactory.newInstance();
-
- factory.setValidating(VALIDATION);
- DocumentBuilder parser=factory.newDocumentBuilder();
-
- parser.setErrorHandler(new AXMLErrorHandler());
- InputStream is = AUtilities.getFileAsStream(fileName);
- Node pdg=parser.parse(is).getDocumentElement();
- NodeList particlesList=pdg.getChildNodes();
- int particlesCount=particlesList.getLength();
-
- for(int i=0; i<particlesCount; i++) {
- Node particle=particlesList.item(i);
-
- if(particle.getNodeType()==Node.ELEMENT_NODE) {
- AParticle p=new AParticle(particle);
-
- particles.put(new Integer(p.getCode()), p);
- }
- }
- } catch(Exception e) {
- logger.error("Failed reading PDG table", e);
- }
- }
-
- public static int getCharge(int code) {
- int sign=code/Math.abs(code);
- AParticle p=particles.get(new Integer(Math.abs(code)));
-
- if(p!=null)
- return p.getCharge()*sign;
- else throw new ParticleNotFoundError(code);
- }
-
- public static String getName(int code) {
- AParticle p=particles.get(new Integer(Math.abs(code)));
- int sign=1;
-
- if(code<0) sign=-1;
- if(p!=null)
- return p.getName(sign);
- else throw new ParticleNotFoundError(code);
- }
-
- public static int getParticleType(int code) {
- AParticle p=particles.get(new Integer(Math.abs(code)));
-
- if(p!=null)
- return p.getType();
- else throw new ParticleNotFoundError(code);
- }
-
- //Declare our own error type here - no special implementation
- public static class ParticleNotFoundError extends Error {
-
- //Only implement Error constructor with particle code
- ParticleNotFoundError(int code){
- super("Particle with code "+code+" not found in PDG table");
- }
- }
-
-public static String getFileInCurrentUserThenAtlantisHome(String directory, String name)
-{
- File user = new File(name);
- if (!user.canRead())
- {
- return AGlobals.instance().getHomeDirectory() + directory +
- System.getProperty("file.separator") + name;
- }
- return name;
-};
-}
diff --git a/graphics/AtlantisJava/src/atlantis/data/AParticle.java b/graphics/AtlantisJava/src/atlantis/data/AParticle.java
deleted file mode 100755
index 8007ae2c46f..00000000000
--- a/graphics/AtlantisJava/src/atlantis/data/AParticle.java
+++ /dev/null
@@ -1,57 +0,0 @@
-package atlantis.data;
-
-
-import atlantis.output.AExceptionHandler;
-
-import org.w3c.dom.*;
-
-
-/**
- * This class is used to store the properties of a particle. Used by APDGTable.
- */
-public class AParticle {
- private String name;
- private int charge;
- private int type;
- private int code;
-
- private String[] chargeRep=new String[] { "-", "0", "+"};
-
- public AParticle(Node node) {
- NamedNodeMap atts=node.getAttributes();
-
- try {
- charge=Integer.parseInt(atts.getNamedItem("charge").getNodeValue());
- type=Integer.parseInt(atts.getNamedItem("type").getNodeValue());
- code=Integer.parseInt(atts.getNamedItem("code").getNodeValue());
- name=atts.getNamedItem("name").getNodeValue();
- } catch(NumberFormatException e) {
- AExceptionHandler.processException("PDG error in Particle Node: "+node, e);
- }
- }
-
- public int getCharge() {
- return charge;
- }
-
- public int getType() {
- return type;
- }
-
- public int getCode() {
- return code;
- }
-
- public String getName() {
- return name;
- }
-
- public String getName(int sign) {
- if(charge!=0) {
- if(name.equals("Proton")&&sign==1) return "Proton";
- if(name.equals("Proton")&&sign==-1) return "Antiproton";
- return name+chargeRep[charge*sign+1];
- } else
- return name;
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/data/APhotonData.java b/graphics/AtlantisJava/src/atlantis/data/APhotonData.java
deleted file mode 100755
index 7f942031f09..00000000000
--- a/graphics/AtlantisJava/src/atlantis/data/APhotonData.java
+++ /dev/null
@@ -1,166 +0,0 @@
-package atlantis.data;
-
-import java.util.Vector;
-
-import atlantis.event.*;
-import atlantis.globals.AGlobals;
-import atlantis.utils.AHashMap;
-import atlantis.utils.AMath;
-import atlantis.utils.A4Vector;
-
-/**
- * Reconstructed Photon
- */
-public class APhotonData extends AAODData
-{
- private enum isEMe { Tight, Loose, none }
-
- private int[] isEM;
-
- private Vector<Enum> isEMEnum = new Vector<Enum>();
- private String[] label;
-
- APhotonData(AHashMap p, AEvent e)
- {
- super(p,e);
- String[] isEMString=p.getUnsureStringArray("isEMString");
- label=p.getUnsureStringArray("label");
- isEM=p.getUnsureIntArray("isEM");
-
- if(isEMString!=null)
- {
- for(String s : isEMString)
- {
- try {
- isEMEnum.add(isEMe.valueOf(s));
- }
- catch(IllegalArgumentException q) {
- isEMEnum.add(isEMe.none);
- }
- }
- }
- else
- {
- for(int i=0;i<numData;i++)
- {
- isEMEnum.add(isEMe.none);
- }
- }
- }
-
- public String getParameterGroup()
- {
- return "Photon";
- }
-
- public String getName()
- {
- return "Photon";
- }
-
- public String getisEMEnum(int index)
- {
- return isEMEnum.get(index).toString();
- }
-
- public int getisEM(int index)
- {
- return isEM[index];
- }
-
- public String getlabel(int index)
- {
- return label[index];
- }
-
- public A4Vector get4Vector(int num, int[] list)
- {
- A4Vector sum = new A4Vector();
- for (int i = 0; i < num; ++i)
- {
- int k = list[i];
- A4Vector start = new A4Vector();
- start.setPtEtaPhiM(pT[k],eta[k],phi[k],0);
- sum.add(start);
- }
- return sum;
- }
-
- protected void applyCuts()
- {
- super.applyCuts();
- cut("CutsObjects", "PhotonPt", " |ET|", pT);
-
- // because of the retriever bug, currently 2048 means 0 for isEM
- // remove this for block when the bug is fixed
- if(isEM != null)
- {
- for(int i=0; i<isEM.length; i++)
- {
- if(isEM[i]==2048)
- isEM[i] = 0;
- }
- }
-
- cut("CutsObjects", "PhotonisEM", " isEM", isEM);
-
- if (parameterStore.get("CutsObjects", "PhotonisEMString").getStatus())
- {
- int cutSub = parameterStore.get("CutsObjects", "PhotonisEMString").getI();
- cutArrayEnum(isEMEnum, cutSub, "Photon isEMString");
- }
- }
-
- public String getHitInfo(int index)
- {
- int simpleOutput = AGlobals.instance().getSimpleOutput();
- if(simpleOutput>0){
- String output = getNameScreenName()+" index: " + index;
- if(simpleOutput==1 || simpleOutput==3)
- output+= "\n PT="+String.format("%.3f",pT[index])+" GeV\n "+
- AMath.ETA+" = "+String.format("%.3f",eta[index])+"\n "+
- AMath.PHI+" = "+String.format("%.3f",Math.toDegrees(phi[index]))+AMath.DEGREES;
- if(simpleOutput==2 || simpleOutput==3)
- output+= "\n Px="+String.format("%.3f",pT[index]*Math.cos(phi[index]))+" GeV "+
- "\n Py="+String.format("%.3f",pT[index]*Math.sin(phi[index]))+" GeV "+
- "\n Pz="+String.format("%.3f",pT[index]*Math.sinh(eta[index]))+" GeV ";
- return output;
- }
-
- String k = this.getStoreGateKey();
- String sgKey = k != null ? k : "n/a";
- StringBuffer msg = new StringBuffer(getNameScreenName());
- msg.append(" (id: " + id[index] + " index: " + index + ")");
- msg.append("\n storegate key: ");
- msg.append(sgKey);
- msg.append("\n PT = ");
- msg.append(String.format("%.3f",pT[index]));
- msg.append(" GeV\n P = ");
- msg.append(String.format("%.3f",Math.abs(pT[index]/Math.cos(AMath.lambda(eta[index])))));
- msg.append(" GeV\n ");
- msg.append(AMath.ETA);
- msg.append(" = ");
- msg.append(String.format("%.3f",eta[index]));
- msg.append("\n ");
- msg.append(AMath.PHI);
- msg.append(" = ");
- msg.append(String.format("%.3f",Math.toDegrees(phi[index])));
- msg.append(AMath.DEGREES);
- msg.append(" (" + String.format("%.3f",phi[index]) + " rad)");
-
- if (isEM != null)
- {
- msg.append("\n isEM = ");
- msg.append(isEM[index]);
- }
- if (label != null)
- {
- msg.append("\n label = ");
- msg.append(label[index]);
- }
-
- return msg.toString();
- }
-
-}
-
diff --git a/graphics/AtlantisJava/src/atlantis/data/APixelClusterData.java b/graphics/AtlantisJava/src/atlantis/data/APixelClusterData.java
deleted file mode 100644
index acbe38d5856..00000000000
--- a/graphics/AtlantisJava/src/atlantis/data/APixelClusterData.java
+++ /dev/null
@@ -1,403 +0,0 @@
-package atlantis.data;
-
-import atlantis.event.*;
-import atlantis.globals.AGlobals;
-import atlantis.graphics.ACoord;
-import atlantis.parameters.AParameter;
-import atlantis.parameters.AParameterUtilities;
-import atlantis.projection.AProjectionVP;
-import atlantis.utils.AHashMap;
-import atlantis.utils.AMath;
-
-/**
- * PixelCluster - Pixel clusters, as SiCluster but for Pixels
- * reads in PixelCluster datatype
- */
-public class APixelClusterData extends AHitData
-{
- // read in from event file
- private float[] x;
- private float[] y;
- private float[] z;
- private float[] widthx;
- private float[] widthy;
- private int[] etaModule;
- private int[] phiModule;
- private float[] eloss;
-
- // calculated
- private float[][] rho;
- private float[][] phi;
- private int[] layer;
-
- public static final int U_CLUSTER = -1;
- public static final int PHI_CLUSTER = 0;
- public static final int V_CLUSTER = 1;
- public static final int ENDCAP_MINUS = 0;
- public static final int BARREL = 1;
- public static final int ENDCAP_PLUS = 2;
-
-
- public String getParameterGroup()
- {
- return "PixelCluster";
- }
-
- public String getName()
- {
- return "PixelCluster";
- }
-
- public String getNameScreenName()
- {
- return "PixelCluster";
- }
-
- public float[] getX()
- {
- return x;
- }
-
- public float[] getY()
- {
- return y;
- }
-
- public float[] getZ()
- {
- return z;
- }
-
- APixelClusterData(AHashMap p, AEvent e)
- {
- super(p,e);
- x = p.getFloatArray("x0");
- y = p.getFloatArray("y0");
- z = p.getFloatArray("z0");
- widthx = p.getFloatArray("widthx");
- widthy = p.getFloatArray("widthy");
- eloss = p.getFloatArray("eloss");
-
- rho = new float[2][numData];
- phi = new float[2][numData];
-
- layer = new int[numData];
- for (int i = 0; i < numData; ++i)
- {
- sub[i] = getSub(id[i]);
- layer[i] = getLayer(id[i]);
- }
-
- etaModule = (p.get("etaModule") != null) ? p.getIntArray("etaModule") : null;
- phiModule = (p.get("phiModule") != null) ? p.getIntArray("phiModule") : null;
-
- } // APixelClusterData() ---------------------------------------------------
-
-
-
- protected void calculateRhoPhi()
- {
- calculateRhoPhi(x, y, rho[0], phi[0]);
- // treat wraparound
- for (int i = 0; i < numData; ++i)
- {
- if (Math.abs(0 - phi[0][i]) > Math.PI)
- {
- if (0 - phi[0][i] > 0)
- {
- phi[0][i] += AMath.TWO_PI;
- }
- }
- } // for
- } // calculateRhoPhi() --------------------------------------------------
-
- private void cutSubdetector()
- {
- AParameter par = parameterStore.get("CutsInDet", "SCT");
- if (par.getI() != -1)
- {
- cutArray(sub, par.getI(), "Barrel/Endcap");
- }
- } // cutSubdetector() ---------------------------------------------------
-
-
- protected void applyCuts()
- {
- cutIndex();
- cutOrientation();
- cutSubdetector();
- cut("CutsInDet", "Layer", "Layer", layer);
- cutSimulatedTracks();
- cutReconstructedTracks();
- cutPhi(phi[0]);
- cutEta();
- } // applyCuts() --------------------------------------------------------
-
- private void cutEta()
- {
- AParameter par = parameterStore.get("CutsATLAS", "CutEta");
- if (!par.getStatus())
- return;
- double etaCut = par.getD();
- double etaMid = parameterStore.get("CutsATLAS", "EtaMiddle").getD();
- double etaLowerCut = etaMid - etaCut;
- double etaUpperCut = etaMid + etaCut;
- int num = 0;
- for (int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
- double eta1 = AParameterUtilities.eta(z[list], rho[0][list]);
- if (eta1 > etaLowerCut && eta1 < etaUpperCut)
- listdl[num++] = list;
- }
- numDraw = num;
- } // cutEta() -----------------------------------------------------------
-
- public int getLayer(int id)
- {
- int layer = (id >> 27) & 0x3;
- int sub = getSub(id);
- if (sub != BARREL)
- {
- layer += 7;
- }
- return layer;
- } // getLayer() ---------------------------------------------------------
-
- public int getSub(int id)
- {
- // bitwise operation to determine cluster position from id (1,0,2 -> endcap-,barrel,endcap+)
- return(id >> 29) & 0x3;
- } // getSub() -----------------------------------------------------------
-
- public int getOrientation(int id)
- {
- int side = (id & 0x400) >> 10;
- int sub = getSub(id);
- if ((side == 1 && sub == BARREL) || (side == 0 && sub != BARREL))
- {
- return PHI_CLUSTER;
- }
-
- int layer = getLayer(id);
- if (layer % 2 == 1)
- {
- return U_CLUSTER;
- }
-
- return V_CLUSTER;
- } // getOrientation() ---------------------------------------------------
-
- protected void cutOrientation()
- {
- int num = 0;
- AParameter stereoAnglePar = parameterStore.get("PixelCluster", "Stereo");
- if (!stereoAnglePar.getStatus())
- {
- return;
- }
- int orientation = stereoAnglePar.getI();
- for (int i = 0; i < numDraw; i++)
- {
- if (orientation == getOrientation(id[listdl[i]]))
- {
- listdl[num++] = listdl[i];
- }
- }
- numDraw = num;
- } // cutOrientation() ---------------------------------------------------
-
- protected int internalColor()
- {
- int numColorTypes = super.internalColor();
- int colorFunction = parameterStore.get(PARAMETER_GROUP, "ColorFunction").getI();
- if (colorFunction == numColorTypes + 1)
- {
- colorBy(layer);
- }
- else if (colorFunction == numColorTypes + 2)
- {
- colorByOrientation();
- }
- else if (colorFunction == numColorTypes + 3)
- {
- colorByEloss();
- }
-
- return numColorTypes + 2;
- } // internalColor() ----------------------------------------------------
-
- protected void colorByOrientation()
- {
- int numColors = parameterStore.get("HitColors", "Number").getI();
- numColors = Math.min(7, numColors);
- int[] col = parameterStore.getArray("HitColors", "C1", numColors);
- for (int i = 0; i < numData; i++)
- {
- color[i] = (byte) col[getOrientation(id[i]) + 1 % numColors];
- }
- } // colorByOrientation() -----------------------------------------------
-
- protected void colorByEloss()
- {
- // This method currently uses the uncorrected value for eloss as an approximation to dE/dx
- // Need to either loop over one track collection for associated tracks in Atlantis, or do this in JiveXML..
-
- int numColors = parameterStore.get("HitColors", "Number").getI();
- numColors = Math.min(7, numColors);
- int[] col = parameterStore.getArray("HitColors", "C1", numColors);
- for (int i = 0; i < numData; i++)
- {
- if(eloss[i] < 0.5)
- {
- color[i] = (byte) col[1 + 1 % numColors]; // blue
- }
- else if(eloss[i] >=0.5 && eloss[i] < 2)
- {
- color[i] = (byte) col[5 + 1 % numColors]; // yellow
- }
- else if(eloss[i] >=2)
- {
- color[i] = (byte) col[2 + 1 % numColors]; // red/orange
- }
- }
- } // colorByEloss() -----------------------------------------------------
-
- public String getHitInfo(int index)
- {
- int simpleOutput = AGlobals.instance().getSimpleOutput();
- if(simpleOutput>0) return getNameScreenName()+" index: " + index;
-
- String temp = getNameScreenName() + " (id: " + id[index] + " index: " + index +")\n" +
- " orientation = " + getOrientation(id[index]);
- temp += "\n x = " + x[index];
- temp += "\n y = " + y[index];
- temp += "\n z = " + z[index];
- temp += "\n " + AMath.RHO + " = " + rho[0][index] + " " + rho[1][index];
- temp += "\n " + AMath.ETA + " module = ";
- temp += (etaModule != null) ? Integer.toString(etaModule[index]) : "n/a";
- temp += "\n " + AMath.PHI + " module = ";
- temp += (phiModule != null) ? Integer.toString(phiModule[index]) : "n/a";
- temp += "\n widthx = ";
- temp += (widthx != null) ? Float.toString(widthx[index]) : "n/a";
- temp += "\n widthy = ";
- temp += (widthy != null) ? Float.toString(widthx[index]) : "n/a";
- temp += "\n eloss = ";
- temp += (eloss != null) ? Float.toString(eloss[index]) : "n/a";
-
- temp += super.getHitInfo(index); // finds barcode information
-
- return temp;
- } // getHitInfo() -------------------------------------------------------
-
- protected ACoord getYXUser()
- {
- makeDrawList();
- double[][][] hv = new double[2][2][numDraw];
- int[] index = new int[numDraw];
- for (int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
- for (int j = 0; j < 1; j++)
- {
- hv[0][j][i] = x[list];
- hv[1][j][i] = y[list];
- }
- index[i] = list;
- }
- return new ACoord(hv, index, this, ACoord.SYMBOLS);
- } // getYXUser() --------------------------------------------------------
-
- protected ACoord getRZUser()
- {
- makeDrawList();
- double[][][] hv = new double[2][2][numDraw];
- int[] index = new int[numDraw];
- double phiMid = Math.toRadians(parameterStore.get("RZ", "Phi").getD());
- for (int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
- double phiDiff = Math.abs(phi[0][list] - phiMid);
- double sign;
- if (phiDiff < Math.PI / 2. || phiDiff > 3 * Math.PI / 2.)
- {
- sign = +1.;
- }
- else
- {
- sign = -1.;
- }
-
- for (int j = 0; j < 1; j++)
- {
- hv[0][j][i] = z[list];
- hv[1][j][i] = sign * rho[j][list];
- }
- index[i] = list;
- }
- return new ACoord(hv, index, this, ACoord.SYMBOLS);
- } // getRZUser() --------------------------------------------------------
-
- protected ACoord getFRUser()
- {
- makeDrawList();
- double[][][] hv = new double[2][2][numDraw];
- int[] index = new int[numDraw];
- for (int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
- for (int j = 0; j < 1; j++)
- {
- hv[0][j][i] = rho[j][list];
- hv[1][j][i] = Math.toDegrees(AParameterUtilities.getPhiStereo(rho[j][list], phi[j][list], z[list]));
- }
- index[i] = list;
- }
- return new ACoord(hv, index, this, ACoord.SYMBOLS).includePhiWrapAround("FR");
- } // getFRUser() --------------------------------------------------------
-
- protected ACoord getFZUser()
- {
- makeDrawList();
- double[][][] hv = new double[2][2][numDraw];
- int[] index = new int[numDraw];
- for (int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
- for (int j = 0; j < 1; j++)
- {
- hv[0][j][i] = z[list];
- hv[1][j][i] = Math.toDegrees(AParameterUtilities.getPhiStereo(rho[j][list], phi[j][list], z[list]));
- }
- index[i] = list;
- }
- return new ACoord(hv, index, this, ACoord.SYMBOLS).includePhiWrapAround("FZ");
- } // getFZUser() --------------------------------------------------------
-
- protected ACoord getVPUser()
- {
- makeDrawList();
- int numTotal = 2 * numDraw;
- double[][][] hv = new double[2][numTotal][2];
- int[] index = new int[numTotal];
- double[] sign = new double[] { -1., 1. };
- for (int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
-
- double deltaEta = AProjectionVP.getDeltaEta(rho[0][list], z[list]);
- double eta = AParameterUtilities.eta(z[list], rho[0][list]);
- for (int j = 0; j < 2; j++)
- {
- // pixels displayed halfway in phi and eta, for some reason
- // quick fix = multiply by 2
- hv[0][2 * i + j][0] = 2*(eta + sign[j] * deltaEta);
- hv[1][2 * i + j][0] = 2*Math.toDegrees(phi[0][list]);
- index[2 * i + j] = list;
- }
-
- }
- return new ACoord(hv, index, this, ACoord.POLYLINES).includePhiWrapAround("VP");
- } // getVPUser() --------------------------------------------------------
-
-} // class APixelClusterData ===================================================
diff --git a/graphics/AtlantisJava/src/atlantis/data/APixelRDOData.java b/graphics/AtlantisJava/src/atlantis/data/APixelRDOData.java
deleted file mode 100644
index f9c78bd7bf8..00000000000
--- a/graphics/AtlantisJava/src/atlantis/data/APixelRDOData.java
+++ /dev/null
@@ -1,160 +0,0 @@
-package atlantis.data;
-
-import atlantis.event.*;
-import atlantis.globals.AGlobals;
-import atlantis.graphics.ACoord;
-import atlantis.parameters.AParameter;
-import atlantis.parameters.AParameterUtilities;
-import atlantis.utils.AHashMap;
-import atlantis.utils.AMath;
-
-
-/*
- * PixelRDO - Pixel Raw Data object (SpacePoint Raw Data Objects)
- * The class is derived from AS3DData class (SpacePoint)
- * Parameters expected in the event file for the PixelRDO datatype
- * id x y z etaModule phiModule
- */
-public class APixelRDOData extends AS3DData
-{
- private int[] etaModule = null;
- private int[] phiModule = null;
-
-
- public String getParameterGroup()
- {
- return "PixelRDO";
-
- } // getParameterGroup() ------------------------------------------------
-
-
-
- public String getName()
- {
- return "PixelRDO";
-
- } // getName() ----------------------------------------------------------
-
-
-
- public String getNameScreenName()
- {
- return "PixelRDO";
-
- } // getNameScreenName() ------------------------------------------------
-
-
-
- public String getHitInfo(int index)
- {
- int simpleOutput = AGlobals.instance().getSimpleOutput();
- if(simpleOutput>0) return getNameScreenName()+" index: " + index+"\n"+
- AMath.RHO+" = "+String.format("%.3f",rho[index])+"\n "+
- "z = "+String.format("%.3f",z[index])+" cm\n"+
- AMath.PHI+" = "+String.format("%.3f",Math.toDegrees(phi[index]))+AMath.DEGREES;
-
- String temp = getNameScreenName() + " (id: " + id[index] + " index: " + index + ")" +
- "\n " + AMath.RHO + " = " + String.format("%.3f",rho[index]) + " cm" +
- "\n " + AMath.PHI + " = " +
- String.format("%.3f",Math.toDegrees(phi[index])) +
- AMath.DEGREES + " (" + String.format("%.3f",phi[index]) + " rad)" +
- "\n z = " + String.format("%.3f",z[index]) + " cm";
-
- temp += "\n " + AMath.ETA + " module = ";
- temp += (etaModule != null) ? Integer.toString(etaModule[index]) : "n/a";
- temp += "\n " + AMath.PHI + " module = ";
- temp += (phiModule != null) ? Integer.toString(phiModule[index]) : "n/a";
-
- return temp;
-
- } // getHitInfo() -------------------------------------------------------
-
-
-
- APixelRDOData(AHashMap p, AEvent e)
- {
- super(p,e);
- id = p.getIntArray("id");
- etaModule = (p.get("etaModule") != null) ? p.getIntArray("etaModule") : null;
- phiModule = (p.get("phiModule") != null) ? p.getIntArray("phiModule") : null;
-
- } // APixelRDOData() ----------------------------------------------------
-
-
-
- protected int internalColor()
- {
- int numColorTypes = super.internalColor();
- // int colorFunction=APar.get(PARAMETER_GROUP, "ColorFunction").getI();
- // color by error will go here
- // if(colorFunction==numColorTypes+1)
- // colorByError() - to implement
-
- return numColorTypes + 1;
-
- } // internalColor() ----------------------------------------------------
-
-
-
- protected void applyCuts()
- {
- cutIndex();
- cutPhi(phi);
- cutEta(rho, z);
- if(etaModule != null)
- {
- cut("CutsInDet", "EtaModule", " EtaModule", etaModule);
- }
- if(phiModule != null)
- {
- cut("CutsInDet", "PhiModule", " PhiModule", phiModule);
- }
-
- cutSubdetector();
- } // applyCuts() --------------------------------------------------------
-
- private void cutSubdetector()
- {
- AParameter subPar = parameterStore.get("CutsInDet", "SCT");
- if(subPar.getI() != -1)
- cutArray(sub, subPar.getI(), "Barrel/Endcap");
- }
-
- protected ACoord getFRUser()
- {
- makeDrawList();
- double[] h = new double[numDraw];
- double[] v = new double[numDraw];
- int[] index = new int[numDraw];
-
- for(int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
- h[i] = rho[list];
- v[i] = Math.toDegrees(AParameterUtilities.getPhiStereo(rho[list], phi[list], z[list]));
- index[i] = list;
- }
- return new ACoord(h, v, index, this).includePhiWrapAround("FR");
-
- } // getFRUser() --------------------------------------------------------
-
-
-
- protected ACoord getFZUser()
- {
- makeDrawList();
- double[] h = new double[numDraw];
- double[] v = new double[numDraw];
- int[] index = new int[numDraw];
- for(int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
- h[i] = z[list];
- v[i] = Math.toDegrees(AParameterUtilities.getPhiStereo(rho[list], phi[list], z[list]));
- index[i] = list;
- }
- return new ACoord(h, v, index, this).includePhiWrapAround("FZ");
-
- } // getFZUser() --------------------------------------------------------
-
-} // class APixelRDOData ====================================================
diff --git a/graphics/AtlantisJava/src/atlantis/data/APulseShapePlot.java b/graphics/AtlantisJava/src/atlantis/data/APulseShapePlot.java
deleted file mode 100644
index 8f1279d0fd0..00000000000
--- a/graphics/AtlantisJava/src/atlantis/data/APulseShapePlot.java
+++ /dev/null
@@ -1,513 +0,0 @@
-package atlantis.data;
-
-import java.util.Vector;
-import java.awt.BorderLayout;
-import java.awt.Component;
-import java.awt.event.WindowEvent;
-import java.awt.event.WindowAdapter;
-
-import javax.swing.JFrame;
-import javax.swing.JPanel;
-
-// JAS libraries used by Plot class below
-import hep.aida.IAnalysisFactory;
-import hep.aida.ITree;
-import hep.aida.IPlotter;
-import hep.aida.IDataPoint;
-import hep.aida.IDataPointSet;
-import hep.aida.IDataPointSetFactory;
-import hep.aida.IPlotterStyle;
-import hep.aida.ref.plotter.PlotterUtilities;
-
-import atlantis.globals.AGlobals;
-import atlantis.graphics.AIcon;
-
-
-/**
- * Plotting pulse shapes and ADC counts for calorimeters
- *
- * @author Zdenek Maxa
-
- */
-public class APulseShapePlot
-{
- protected static Component guiComponent = AGlobals.instance().getGuiFrame();
- private static Vector<JFrame> frameVector = new Vector<JFrame>();
-
- private APulseShapePlot() {}
-
-
- /**
- * Plot real pulse shapes plots - ADC counts and calculated values of the
- * real pulse shape plot over it. Works for multiple channels (TILE) as
- * well as for a single channel e.g. LAr
- *
- * @param adcCounts int[][]
- * @param realPulse double[][]
- * @param step double
- * @param subTitle String[]
- * @param title String
- */
- public static void plotRealPulseShapes(int[][] adcCounts, double[][] realPulse,
- double step, String[] subTitle, String title)
- {
- JFrame frame = new JFrame(title);
- frame.setTitle(title);
- frame.setDefaultCloseOperation(JFrame.DISPOSE_ON_CLOSE);
- AIcon.setIconImage(frame);
- frame.setLocation(guiComponent.getLocation());
- Plot p = new Plot();
- frame.setContentPane(p);
- p.plotRealPulseShapes(adcCounts, realPulse, step, subTitle);
- frame.pack();
- int windowWidth = 330 + ((adcCounts.length - 1) * 110);
- int windowHeight = 300;
- frame.setSize(windowWidth, windowHeight);
- frame.setVisible(true);
-
- frame.addWindowListener(new AllWindowsDisposer());
- frameVector.add(frame);
-
- } // plotRealPulseShapes() ----------------------------------------------
-
- public static void plotRawCellPulseShapes(int[][] adcCounts, double[][] rawPulse,
- double[][] cellPulse, double step,
- String[] subTitle, String title)
- {
- JFrame frame = new JFrame(title);
- frame.setTitle(title);
- frame.setDefaultCloseOperation(JFrame.DISPOSE_ON_CLOSE);
- AIcon.setIconImage(frame);
- frame.setLocation(guiComponent.getLocation());
- Plot p = new Plot();
- frame.setContentPane(p);
- p.plotRawCellPulseShapes(adcCounts, rawPulse, cellPulse, step, subTitle);
- frame.pack();
- int windowWidth = 440 + ((adcCounts.length - 1) * 140);
- int windowHeight = 400;
- frame.setSize(windowWidth, windowHeight);
- frame.setVisible(true);
-
- frame.addWindowListener(new AllWindowsDisposer());
- frameVector.add(frame);
-
- } // plotRealPulseShapes() ----------------------------------------------
-
- /**
- * Plots only ADC counts, used as follows:
- * APulseShapePlot.plotADCCounts(adcCounts[index], title)
- * still used for instance when real pulse shapes plot data is not
- * available, e.g. LAr presampler (layer 0)
-
- * @param data int[][]
- * @param title String title of window
- * @param axis String[] title for the horizontal axis on each plot (if null uses "bunch crossing")
- */
- public static void plotADCCounts(int[][] data, String title, String[] axis)
- {
- String[] labels = new String[data.length];
- String[] colors = new String[data.length];
- for(int i=0; i<data.length; i++)
- {
- labels[i]="ADC counts";
- colors[i]="blue";
- }
- String[] newAxis;
- if(axis!=null)
- {
- newAxis=axis;
- }
- else
- {
- newAxis= new String[data.length];
- for(int i=0; i<data.length; i++)
- {
- newAxis[i] = "bunch crossing";
- }
- }
- plotADCCounts(data, title, newAxis, labels, colors);
- }
-
-
-
- /**
- * Plots only ADC counts, used as follows:
- * APulseShapePlot.plotADCCounts(adcCounts[index], title)
- * still used for instance when real pulse shapes plot data is not
- * available, e.g. LAr presampler (layer 0)
-
- * @param data int[][]
- * @param title String title of window
- * @param axis String[] titles for the horizontal axis on each plot
- * @param labels String[] titles for each plot
- * @param colors String[] color of datapoints for each plot
- */
- public static void plotADCCounts(int[][] data, String title, String[] axis, String[] labels, String[] colors)
- {
- JFrame frame = new JFrame(title);
- AIcon.setIconImage(frame);
- frame.setLocation(guiComponent.getLocation());
- Plot p = new Plot();
- frame.setContentPane(p);
- p.plotADCCounts(data, axis, labels, colors);
- frame.pack();
- int windowWidth = 330+ ((data.length - 1) * 110);
- int windowHeight = 300;
- frame.setSize(windowWidth, windowHeight);
- frame.setVisible(true);
-
- frame.addWindowListener(new AllWindowsDisposer());
- frameVector.add(frame);
-
- } // plotADCCounts() --------------------------------------------------
-
-
-
- static class AllWindowsDisposer extends WindowAdapter
- {
- public void windowClosing(WindowEvent e)
- {
- for(int i = 0; i < frameVector.size(); i++)
- {
- JFrame cf = frameVector.get(i);
- cf.dispose();
- }
- frameVector.removeAllElements();
- }
-
- } // class AllWindowsDisposer ===========================================
-
-
-} // class ACaloPulseShapePlot ==============================================
-
-
-
-/**
- *
- * <p>Title: Plot</p>
- *
- * <p>Description: Plotting class using JAS library </p>
- *
- */
-class Plot extends JPanel
-{
-
- public Plot()
- {
- super(new BorderLayout());
-
- } // Plot() -------------------------------------------------------------
-
-
-
- protected void plotRealPulseShapes(int[][] adcCounts, double[][] realPulse,
- double step, String[] subTitle)
- {
-
- IAnalysisFactory af = IAnalysisFactory.create();
- ITree tree = af.createTreeFactory().create();
- IDataPointSetFactory dpsf = af.createDataPointSetFactory(tree);
-
- // Create a two dimensional IDataPointSet
- IDataPointSet[] dataPointSet = new IDataPointSet[adcCounts.length];
- for(int i = 0; i < adcCounts.length; i++)
- {
- String myTitle = (subTitle != null) ? subTitle[i] : "Real pulse shape";
-
- double[] x = new double[adcCounts[i].length];
- double[] y = new double[adcCounts[i].length];
- double[] e = new double[adcCounts[i].length];
-
- for(int ii = 0; ii < adcCounts[i].length; ii++)
- {
- x[ii] = ii + 1.0; // counting from 1 (to 9 for TILE)
- y[ii] = (double) adcCounts[i][ii];
- e[ii] = 0.0; // arrays with errors
- }
-
- // first parameter must be path - what for here?
- dataPointSet[i] = dpsf.createXY(myTitle, x, y, e, e);
- dataPointSet[i].setTitle(myTitle);
- } // over number of channels
-
- // Create a two dimensional IDataPointSet
- IDataPointSet[] dataPointSetReal = new IDataPointSet[realPulse.length];
- for(int i = 0; i < realPulse.length; i++)
- {
- String myTitle = (subTitle != null) ? subTitle[i] : "Real pulse shape";
-
- double[] x = new double[realPulse[i].length];
- double[] y = new double[realPulse[i].length];
- double[] e = new double[realPulse[i].length];
-
- double d = 1.0;
- for(int ii = 0; ii < realPulse[i].length; ii++)
- {
- x[ii] = d;
- y[ii] = realPulse[i][ii];
- e[ii] = 0.0; // arrays with errors
- d += step;
- }
-
- // first parameter must be path - what for here?
- dataPointSetReal[i] = dpsf.createXY(myTitle, x, y, e, e);
- dataPointSetReal[i].setTitle(myTitle);
-
- } // over number of channels
-
-
- IPlotter plotter = af.createPlotterFactory().create("");
-
- plotter.createRegions(adcCounts.length, 1); // regions 1x1, 1x2, ...
-
- // set common style parameters for both regions
- IPlotterStyle style = af.createPlotterFactory().createPlotterStyle();
- style.xAxisStyle().setLabel("bunch crossing");
- style.yAxisStyle().setLabel("ADC counts");
- style.titleStyle().textStyle().setColor("black");
- style.titleStyle().textStyle().setBold(true);
- style.xAxisStyle().labelStyle().setColor("black");
- style.yAxisStyle().labelStyle().setColor("black");
-
- // set no legend at plots
- style.statisticsBoxStyle().setVisible(false); // statistical legend
- style.legendBoxStyle().setVisible(false); // legend for function fit
-
- for(int i = 0; i < adcCounts.length; i++)
- {
- // set style parameters different for regions
- style.dataStyle().markerStyle().setParameter("size", "2");
- style.dataStyle().markerStyle().setShape("box"); // "square"
- plotter.region(i).style().dataStyle().markerStyle().setColor("red");
- plotter.region(i).plot(dataPointSetReal[i], style);
-
- style.dataStyle().markerStyle().setParameter("size", "7");
- style.dataStyle().markerStyle().setShape("dot"); // "circle"
- plotter.region(i).style().dataStyle().markerStyle().setColor("blue");
- plotter.region(i).plot(dataPointSet[i], style);
- }
-
- // now embed the plotter
- add(PlotterUtilities.componentForPlotter(plotter), BorderLayout.CENTER);
-
- } // plotRealPulseShapes() ----------------------------------------------
-
-
-
-
- /**
- * Method creates multiple plots of ADC counts only.
- * multiple channels, no fit, no pulse shapes.
- * or plots of ADC Counts pulse shapes.
- *
- * @param data int[][]
- * @param labels String[] titles for each plot
- */
- public void plotADCCounts(int[][] data, String[] axis, String[] labels, String[] colors)
- {
- IAnalysisFactory af = IAnalysisFactory.create();
- ITree tree = af.createTreeFactory().create();
- IDataPointSetFactory dpsf = af.createDataPointSetFactory(tree);
-
- // Create a IDataPointSet (one dimension)
- IDataPointSet[] dataPointSet = new IDataPointSet[data.length];
- for(int j = 0; j < data.length; j++)
- {
-
- dataPointSet[j] = dpsf.create("plot", labels[j], 2);
-
- for(int i = 0; i < data[j].length; i++)
- {
- dataPointSet[j].addPoint();
- IDataPoint dp = dataPointSet[j].point(i);
-
- dp.coordinate(0).setValue(i);
- dp.coordinate(1).setValue(data[j][i]);
- }
- }
-
-
- IPlotter plotter = af.createPlotterFactory().create("");
-
- plotter.createRegions(data.length, 1); // regions 1x1, 1x2, ...
-
- IPlotterStyle style = af.createPlotterFactory().createPlotterStyle();
- style.yAxisStyle().setLabel("ADC counts");
- style.dataStyle().markerStyle().setParameter("size", "7");
- style.dataStyle().markerStyle().setShape("dot");
- style.titleStyle().textStyle().setColor("black");
- style.titleStyle().textStyle().setBold(true);
- style.xAxisStyle().labelStyle().setColor("black");
- style.yAxisStyle().labelStyle().setColor("black");
-
- // set no legend at plots
- style.statisticsBoxStyle().setVisible(false); // statistical legend
- style.legendBoxStyle().setVisible(false); // legend for function fit
-
- for(int j = 0; j < data.length; j++)
- {
- plotter.region(j).style().xAxisStyle().setLabel(axis[j]);
- plotter.region(j).style().dataStyle().markerStyle().setColor(colors[j]);
- plotter.region(j).style().dataStyle().outlineStyle().setColor(colors[j]);
-
- // plot the data - points ('style' parameter is optional for plotter)
- plotter.region(j).plot(dataPointSet[j], style);
- }
- // now embed the plotter
- add(PlotterUtilities.componentForPlotter(plotter), BorderLayout.CENTER);
-
- } // plotADCCounts() ------------ ---------------------------------------
-
-
- protected void plotRawCellPulseShapes(int[][] adcCounts, double[][] rawPulse,
- double[][] cellPulse,
- double step, String[] subTitle)
- {
-
- IAnalysisFactory af = IAnalysisFactory.create();
- ITree tree = af.createTreeFactory().create();
- IDataPointSetFactory dpsf = af.createDataPointSetFactory(tree);
-
- // Create a two dimensional IDataPointSet
- IDataPointSet[] dataPointSet = new IDataPointSet[adcCounts.length];
- for(int i = 0; i < adcCounts.length; i++)
- {
- String myTitle = "ADC counts";
-
- double[] x = new double[adcCounts[i].length];
- double[] y = new double[adcCounts[i].length];
- double[] e = new double[adcCounts[i].length];
-
- for(int ii = 0; ii < adcCounts[i].length; ii++)
- {
- x[ii] = ii + 1.0; // counting from 1 (to 9 for TILE)
- y[ii] = (double) adcCounts[i][ii];
- e[ii] = 0.0; // arrays with errors
- }
-
- // first parameter must be path - what for here?
- dataPointSet[i] = dpsf.createXY(myTitle, x, y, e, e);
- dataPointSet[i].setTitle(myTitle);
- } // over number of channels
-
- // Create a two dimensional IDataPointSet
- IDataPointSet[] dataPointSetCell = new IDataPointSet[cellPulse.length];
- for(int i = 0; i < cellPulse.length; i++)
- {
- String myTitle = "Cell time";
-
- double[] x = new double[cellPulse[i].length];
- double[] y = new double[cellPulse[i].length];
- double[] e = new double[cellPulse[i].length];
-
- double d = 1.0;
- for(int ii = 0; ii < cellPulse[i].length; ii++)
- {
- x[ii] = d;
- y[ii] = cellPulse[i][ii];
- e[ii] = 0.0; // arrays with errors
- d += step;
- }
-
- // first parameter must be path - what for here?
- dataPointSetCell[i] = dpsf.createXY(myTitle, x, y, e, e);
- dataPointSetCell[i].setTitle(myTitle);
-
- } // over number of channels
-
-
- // Create a two dimensional IDataPointSet
- IDataPointSet[] dataPointSetRaw = new IDataPointSet[rawPulse.length];
- for(int i = 0; i < rawPulse.length; i++)
- {
- String myTitle = "Raw time";
-
- double[] x = new double[rawPulse[i].length];
- double[] y = new double[rawPulse[i].length];
- double[] e = new double[rawPulse[i].length];
-
- double d = 1.0;
- for(int ii = 0; ii < rawPulse[i].length; ii++)
- {
- x[ii] = d;
- y[ii] = rawPulse[i][ii];
- e[ii] = 0.0; // arrays with errors
- d += step;
- }
-
- // first parameter must be path - what for here?
- dataPointSetRaw[i] = dpsf.createXY(myTitle, x, y, e, e);
- dataPointSetRaw[i].setTitle(myTitle);
-
- } // over number of channels
-
-
- IPlotter plotter = af.createPlotterFactory().create("");
-
- plotter.createRegions(adcCounts.length, 1); // regions 1x1, 1x2, ...
-
- // set common style parameters for both regions
- IPlotterStyle style = af.createPlotterFactory().createPlotterStyle();
- style.xAxisStyle().setLabel("bunch crossing");
- style.yAxisStyle().setLabel("ADC counts");
- style.titleStyle().textStyle().setColor("black");
- style.titleStyle().textStyle().setBold(true);
- style.xAxisStyle().labelStyle().setColor("black");
- style.yAxisStyle().labelStyle().setColor("black");
-
- style.statisticsBoxStyle().setVisible(false); // statistical legend
- style.legendBoxStyle().setVisible(true); // legend for function fit
-
- for(int i = 0; i < adcCounts.length; i++)
- {
- // set style parameters different for regions
- style.dataStyle().markerStyle().setParameter("size", "4");
- style.dataStyle().markerStyle().setShape("box"); // "square"
- style.dataStyle().showInLegendBox(true);
- plotter.region(i).style().dataStyle().markerStyle().setColor("red");
- plotter.region(i).plot(dataPointSetRaw[i], style);
-
- style.dataStyle().markerStyle().setParameter("size", "2");
- style.dataStyle().markerStyle().setShape("box"); // "square"
- style.dataStyle().showInLegendBox(true);
- plotter.region(i).style().dataStyle().markerStyle().setColor("green");
- plotter.region(i).plot(dataPointSetCell[i], style);
-
- style.dataStyle().markerStyle().setParameter("size", "7");
- style.dataStyle().markerStyle().setShape("dot"); // "circle"
- style.dataStyle().showInLegendBox(false);
- plotter.region(i).style().dataStyle().markerStyle().setColor("blue");
- plotter.region(i).plot(dataPointSet[i], style);
-
- //plotter.region(i).style().legendBoxStyle().boxStyle().borderStyle().setVisible(false);
-
- plotter.region(i).setTitle((subTitle != null) ? subTitle[i] : "Real pulse shape");
- }
-
- // now embed the plotter
- add(PlotterUtilities.componentForPlotter(plotter), BorderLayout.CENTER);
-
- } // plotRealPulseShapes() ----------------------------------------------
-
-
-
-} // class Plot =============================================================
-
-
-
-/* following lines for hints only (futher JAS plotting styles settings)
-
- IPlotterStyle style = plotterFactory.createPlotterStyle();
- style.xAxisStyle().tickLabelStyle().setFontSize(14);
- style.xAxisStyle().tickLabelStyle().setBold(true);
- style.xAxisStyle().tickLabelStyle().setColor("blue");
- style.xAxisStyle().labelStyle().setFontSize(24);
- style.xAxisStyle().labelStyle().setItalic(true);
- style.titleStyle().textStyle().setFontSize(30);
- style.dataStyle().markerStyle().setParameter("size","12");
- style.dataStyle().markerStyle().setParameter("shape","3");
- style.dataStyle().markerStyle().setParameter("color","blue");
- plotter.region(0).plot(h1);
- plotter.region(0).plot(h2, style);
- plotter.show();
-*/
diff --git a/graphics/AtlantisJava/src/atlantis/data/AROIData.java b/graphics/AtlantisJava/src/atlantis/data/AROIData.java
deleted file mode 100644
index 0b3a539e250..00000000000
--- a/graphics/AtlantisJava/src/atlantis/data/AROIData.java
+++ /dev/null
@@ -1,334 +0,0 @@
-package atlantis.data;
-
-import atlantis.event.*;
-import atlantis.globals.AGlobals;
-import atlantis.graphics.ACoord;
-import atlantis.graphics.AGraphics;
-import atlantis.utils.AHashMap;
-import atlantis.utils.AMath;
-
-/**
- * Base class for EmTauROI, JetROI and MuonROI
- *
- * @author Gary Taylor, Zdenek Maxa, Qiang Lu
- */
-
-abstract public class AROIData extends AData
-{
- protected float[] eta;
- protected float[] phi;
- protected float[] energy;
- // energy variables for EmTauROIs
- protected float[] energyEM;
- protected float[] energyTAU;
-
- private int drawOrFill = AGraphics.FILL;
-
- AROIData(AHashMap p, AEvent e)
- {
- super(p,e);
- eta = p.getFloatArray("eta");
- phi = p.getFloatArray("phi");
- energy = p.getFloatArray("energy");
- if(this instanceof AEmTauROIData)
- {
- energyEM = p.getFloatArray("energyEM");
- energyTAU = p.getFloatArray("energyTAU");
- }
- }
-
- public float getEnergy(int index)
- {
- return energy[index];
- }
- public float getEnergyEM(int index)
- {
- return energyEM[index];
- }
- public float getEnergyTAU(int index)
- {
- return energyTAU[index];
- }
-
- public float getEta(int index)
- {
- return eta[index];
- }
-
- public float getPhi(int index)
- {
- return phi[index];
- }
-
- public float[] getEnergy()
- {
- return energy;
- }
-
- public float[] getEnergyEM()
- {
- return energyEM;
- }
-
- public float[] getEnergyTAU()
- {
- return energyTAU;
- }
-
- public float[] getEta()
- {
- return eta;
- }
-
- public float[] getPhi()
- {
- return phi;
- }
-
- protected int getDrawOrFill()
- {
- return drawOrFill;
- }
-
- public String getHitInfo(int index)
- {
- int simpleOutput = AGlobals.instance().getSimpleOutput();
- if(simpleOutput>0) return getNameScreenName()+" index: " + index+
- "\n Energy="+String.format("%.3f",energy[index])+" GeV\n "+
- AMath.ETA+" = "+String.format("%.3f",eta[index])+"\n "+
- AMath.PHI+" = "+String.format("%.3f",Math.toDegrees(phi[index]))+AMath.DEGREES;
-
- double deta = parameterStore.get(PARAMETER_GROUP, "deta").getD();
- double dphi = parameterStore.get(PARAMETER_GROUP, "dphi").getD();
-
- StringBuffer msg = new StringBuffer(getNameScreenName());
- msg.append(" (id: " + id[index] + " index: " + index + ")");
- msg.append("\n energy = ");
- msg.append(String.format("%.3f",energy[index]));
- msg.append(" GeV\n ");
- if(this instanceof AEmTauROIData)
- {
- if(energyEM != null)
- {
- msg.append("energyEM = ");
- msg.append(String.format("%.3f",energyEM[index]));
- msg.append(" GeV\n ");
- }
- if(energyTAU != null)
- {
- msg.append("energyTAU = ");
- msg.append(String.format("%.3f",energyTAU[index]));
- msg.append(" GeV\n ");
- }
- }
- msg.append(AMath.ETA);
- msg.append(" = ");
- msg.append(String.format("%.3f",eta[index]));
- msg.append("\n ");
- msg.append(AMath.PHI);
- msg.append(" = ");
- msg.append(String.format("%.3f",Math.toDegrees(phi[index])));
- msg.append(AMath.DEGREES);
- msg.append(" (" + String.format("%.3f",phi[index]) + " rad)");
- msg.append("\n deta = ");
- msg.append(String.format("%.3f",deta));
- msg.append("\n dphi = ");
- msg.append(String.format("%.3f",Math.toDegrees(dphi)));
- msg.append(AMath.DEGREES);
- msg.append(" (" + String.format("%.3f",dphi) + " rad)");
-
- return msg.toString();
- }
-
- protected int internalColor()
- {
- int colorFunction = parameterStore.get(PARAMETER_GROUP, "ColorFunction").getI();
-
- if (colorFunction == 0)
- {
- colorByConstant();
- }
- else if (colorFunction == 1)
- {
- colorByIndex();
- }
-
- return 1;
- }
-
- protected void applyCuts()
- {
- cutIndex();
- cutPhi(phi);
- cutEta(eta);
- }
-
- protected ACoord getVPUser()
- {
- drawOrFill = AGraphics.DRAW;
-
- double deta = parameterStore.get(PARAMETER_GROUP, "deta").getD() / 2;
- double dphiDeg = Math.toDegrees(parameterStore.get(PARAMETER_GROUP, "dphi").getD()) / 2;
- double phiDeg = 0;
-
- makeDrawList();
- double[][][] hv = new double[2][numDraw][];
- int[] index = new int[numDraw];
-
- for (int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
- phiDeg = Math.toDegrees(phi[list]);
-
- // without the cross in the middle
- // hv[0][i] = AMath.xBox(eta[list], deta); // x-dx,x-dx,x+dx,x+dx
- // hv[1][i] = AMath.yBox(phiDeg, dphiDeg); // y-dy,y+dy,y+dy,y-dy
-
- hv[0][i] = new double[] { eta[list] - deta, eta[list] - deta,
- eta[list] + deta, eta[list] - deta, eta[list] + deta,
- eta[list] - deta, eta[list] + deta, eta[list] + deta };
- hv[1][i] = new double[] { phiDeg - dphiDeg, phiDeg + dphiDeg,
- phiDeg - dphiDeg, phiDeg - dphiDeg, phiDeg + dphiDeg,
- phiDeg + dphiDeg, phiDeg - dphiDeg, phiDeg + dphiDeg };
- index[i] = list;
- }
-
- return new ACoord(hv, index, this).includePhiWrapAround("VP");
- }
-
- protected ACoord getYXUser()
- {
- drawOrFill = AGraphics.FILL;
- double dphi = parameterStore.get(PARAMETER_GROUP, "dphi").getD() / 2;
-
- makeDrawList();
- double[][][] hv = new double[2][numDraw][4];
- int[] index = new int[numDraw];
-
- for (int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
- double phiPlus = phi[list] + dphi;
- double phiMinus = phi[list] - dphi;
- double cosPlus = Math.cos(phiPlus);
- double sinPlus = Math.sin(phiPlus);
- double cosMinus = Math.cos(phiMinus);
- double sinMinus = Math.sin(phiMinus);
-
- double rhoPlus = 1150;
- double rhoMinus = 1130;
-
- // 4 corners of the cell area
- // x0, y0
- hv[0][i][0] = rhoMinus * cosPlus;
- hv[1][i][0] = rhoMinus * sinPlus;
- // x1, y1
- hv[0][i][1] = rhoPlus * cosPlus;
- hv[1][i][1] = rhoPlus * sinPlus;
- // x2, y2
- hv[0][i][2] = rhoPlus * cosMinus;
- hv[1][i][2] = rhoPlus * sinMinus;
- // x3, y3
- hv[0][i][3] = rhoMinus * cosMinus;
- hv[1][i][3] = rhoMinus * sinMinus;
-
- index[i] = list;
- }
- return new ACoord(hv, index, this, ACoord.POLYGONS);
- }
-
- protected ACoord getFRUser()
- {
- ACoord coordFR = getYXUser().convertYXToFR().includePhiWrapAround("FR");
- return coordFR;
- }
-
- protected ACoord getRZUser()
- {
- drawOrFill = AGraphics.FILL;
- double deta = parameterStore.get(PARAMETER_GROUP, "deta").getD() / 2;
-
- makeDrawList();
- double[][][] hv = new double[2][numDraw][4];
- int[] index = new int[numDraw];
-
- for (int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
- double phiMid = Math.toRadians(parameterStore.get("RZ", "Phi").getD());
- double phiDiff = Math.abs(phi[list] - phiMid);
- double rSign;
- if (phiDiff > Math.PI / 2. && phiDiff <= 3 * Math.PI / 2.)
- rSign = -1;
- else
- rSign = 1;
-
- // calculate theta based on the eta value
- double theta = Math.atan(Math.exp(-Math.abs(eta[list]))) * 2.0;
- double thetaPlus = Math.atan(Math.exp(-(Math.abs(eta[list]) - deta))) * 2.0;
- double thetaMinus = Math.atan(Math.exp(-(Math.abs(eta[list]) + deta))) * 2.0;
-
- if ((eta[list] > 0.) && (rSign == -1))
- {
- theta = 2 * Math.PI - theta;
- thetaPlus = 2 * Math.PI - thetaPlus;
- thetaMinus = 2 * Math.PI - thetaMinus;
- }
- else if ((eta[list] < 0.) && (rSign == -1))
- {
- theta += Math.PI;
- thetaPlus += Math.PI;
- thetaMinus += Math.PI;
- }
- else if ((eta[list] < 0.) && (rSign == 1))
- {
- theta = Math.PI - theta;
- thetaPlus = Math.PI - thetaPlus;
- thetaMinus = Math.PI - thetaMinus;
- }
-
- double cosPlus = Math.cos(thetaPlus);
- double sinPlus = Math.sin(thetaPlus);
- double cosMinus = Math.cos(thetaMinus);
- double sinMinus = Math.sin(thetaMinus);
-
- // decide the region based on the theta value
- final byte TOP_BOTTOM = 0;
- final byte LEFT_RIGHT = 1;
- byte region = TOP_BOTTOM;
- // hard-coded value is based on the values in Geometry
- if (Math.abs(Math.tan(theta)) < 0.8)
- region = LEFT_RIGHT;
-
- double radiusMinus = 0.;
- switch (region)
- {
- case TOP_BOTTOM:
- radiusMinus = 1330 / Math.abs(Math.sin(theta));
- break;
- case LEFT_RIGHT:
- radiusMinus = 1630 / Math.abs(Math.cos(theta));
- break;
- }
- double radiusPlus = radiusMinus + 20;
-
- // 4 corners of the cell area
- // x0, y0
- hv[0][i][0] = radiusMinus * cosPlus;
- hv[1][i][0] = radiusMinus * sinPlus;
- // x1, y1
- hv[0][i][1] = radiusPlus * cosPlus;
- hv[1][i][1] = radiusPlus * sinPlus;
- // x2, y2
- hv[0][i][2] = radiusPlus * cosMinus;
- hv[1][i][2] = radiusPlus * sinMinus;
- // x3, y3
- hv[0][i][3] = radiusMinus * cosMinus;
- hv[1][i][3] = radiusMinus * sinMinus;
-
- index[i] = list;
- }
- return new ACoord(hv, index, this, ACoord.POLYGONS);
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/data/ARPCData.java b/graphics/AtlantisJava/src/atlantis/data/ARPCData.java
deleted file mode 100755
index de50662cfd6..00000000000
--- a/graphics/AtlantisJava/src/atlantis/data/ARPCData.java
+++ /dev/null
@@ -1,311 +0,0 @@
-package atlantis.data;
-
-import atlantis.event.*;
-import atlantis.graphics.ACoord;
-import atlantis.utils.AAtlantisException;
-import atlantis.utils.AHashMap;
-import atlantis.utils.AIdHelper;
-import atlantis.utils.ALogger;
-import atlantis.utils.AMath;
-
-/**
- * for comments see AMDTData
- */
-
-public class ARPCData extends AMuonHitData
-{
- protected float[] width;
- protected float[] length;
- protected int[] gasGap;
-
- private static ALogger logger = ALogger.getLogger(ARPCData.class);
-
- public String getParameterGroup()
- {
- return "RPC";
- }
-
- public String getName()
- {
- return "RPC";
- }
-
- public String getNameScreenName()
- {
- return "RPC";
- }
-
- ARPCData(AHashMap p, AEvent e)
- {
- super(p,e);
- length = p.getFloatArray("length");
- width = p.getFloatArray("width");
- gasGap = new int[numData];
- for (int i = 0; i < numData; ++i)
- gasGap[i] = getGasGap(i);
- }
-
- protected int getStation(int index)
- {
- try {
- String stationName = AIdHelper.stationName(id[index]);
-
- if (stationName.charAt(1) == 'M') {
- return AIdHelper.rpcDoubletR(id[index]) - 1;
- } else {
- return AIdHelper.rpcDoubletR(id[index]) + 1;
- }
- } catch (AAtlantisException e) {
- logger.error("Problem decoding RPC identifier", e);
- }
-
- return 0;
- }
-
- protected int getSub(int index)
- {
- return 0;
- }
-
- public int getSector(int index)
- {
- try {
- String stationName = AIdHelper.stationName(id[index]);
-
- if (stationName.charAt(2) == 'L') {
- return 2 * (AIdHelper.stationPhi(id[index]) - 1);
- } else {
- return 2 * (AIdHelper.stationPhi(id[index]) - 1) + 1;
- }
- } catch (AAtlantisException e) {
- logger.error("Problem decoding RPC identifier", e);
- }
-
- return 0;
- }
-
- protected int getGasGap(int index)
- {
- try {
- return AIdHelper.rpcGasGap(id[index]);
- } catch (AAtlantisException e) {
- logger.error("Problem decoding RPC identifier", e);
- }
-
- return 0;
- }
-
- protected boolean getMeasuresPhi(int index)
- {
- try {
- if (AIdHelper.rpcMeasuresPhi(id[index]) == 1) {
- return true;
- }
- } catch (AAtlantisException e) {
- logger.error("Problem decoding RPC identifier", e);
- }
-
- return false;
- }
-
- protected void applyCuts()
- {
- super.applyCuts();
- if (parameterStore.get("CutsATLAS", "CutPhi").getStatus())
- cutPhi(phi, getDPhi());
- if (parameterStore.get("CutsATLAS", "CutEta").getStatus())
- cutEtaDZ(rho, z, getDZ());
- }
-
- private float[] getDPhi()
- {
- // only roughly correct
- // must create all
- float[] dphi = new float[numData];
-
- // need only fill for those in draw list
- for (int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
- if (measuresPhi[list])
- dphi[list] = (float) Math.abs(Math.atan2(width[list] / 2., rho[list]));
- else
- dphi[list] = (float) Math.abs(Math.atan2(length[list] / 2., rho[list]));
- }
- return dphi;
- }
-
- private float[] getDZ()
- {
- // must create all
- float[] dz = new float[numData];
-
- // need only fill for those in draw list
- for (int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
-
- if (measuresPhi[list])
- dz[list] = (float) (length[list] / 2.);
- else
- dz[list] = (float) (width[list] / 2.);
- }
- return dz;
- }
-
- protected ACoord getYXUser()
- {
- makeDrawList();
- cutArray(measuresPhi, true, " Strip");
- double[][][] hv = new double[2][2][numDraw];
- int[] index = new int[numDraw];
-
- for (int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
- double r = rho[list];
- double cosPhi = Math.cos(phi[list]);
- double sinPhi = Math.sin(phi[list]);
- double phiSector = sector[list] * AMath.PI_BY_8;
- double cosPhiSector = Math.cos(phiSector);
- double sinPhiSector = Math.sin(phiSector);
- double d = width[list] / 2.;
- if (!measuresPhi[list])
- d = length[list] / 2.;
- double x = r * cosPhi;
- double y = r * sinPhi;
- double dx = d * sinPhiSector;
- double dy = d * cosPhiSector;
-
- hv[0][0][i] = x + dx;
- hv[1][0][i] = y - dy;
- hv[0][1][i] = x - dx;
- hv[1][1][i] = y + dy;
- index[i] = list;
- }
- return new ACoord(hv, index, this, ACoord.LINES);
- }
-
- protected ACoord getRZUser()
- {
- makeDrawList();
- cutArray(measuresPhi, false, " Strip");
- double[][][] hv = new double[2][2][numDraw];
- int[] index = new int[numDraw];
- double phiMid = Math.toRadians(parameterStore.get("RZ", "Phi").getD());
-
- for (int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
- double phiDiff = Math.abs(phi[list] - phiMid);
- int sign = -1;
-
- if (phiDiff < Math.PI / 2. || phiDiff > 3 * Math.PI / 2.)
- sign = 1;
- double rC = sign * AMDTData.getSectorRho(sector[list], rho[list], phi[list]);
- double zC = z[list];
- double w = width[list] / 2.;
-
- hv[0][0][i] = zC - w;
- hv[1][0][i] = rC;
- hv[0][1][i] = zC + w;
- hv[1][1][i] = rC;
- index[i] = list;
- }
- return new ACoord(hv, index, this, ACoord.LINES);
- }
-
- protected ACoord getXZUser()
- {
- makeDrawList();
- cutMuonSector(sector);
- cutArray(measuresPhi, false, " Strip");
- double[][][] hv = new double[2][2][numDraw];
- int[] index = new int[numDraw];
- int sect=(int)Math.round(parameterStore.get("XZ", "Phi").getD() / 22.5);
-
- for (int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
- int sign = 1;
-
- if (sector[list] != sect)
- sign = -1;
- double rC = sign * AMDTData.getSectorRho(sector[list], rho[list], phi[list]);
- double zC = z[list];
- double w = width[list] / 2.;
-
- hv[0][0][i] = zC - w;
- hv[1][0][i] = rC;
- hv[0][1][i] = zC + w;
- hv[1][1][i] = rC;
- index[i] = list;
- }
- return new ACoord(hv, index, this, ACoord.LINES);
- }
-
- protected ACoord getFRUser()
- {
- makeDrawList();
- cutArray(measuresPhi, true, " Strip");
- return getYXUser().convertYXToFR().includePhiWrapAround("FR");
- }
-
- private void makeDrawListFZ()
- {
- int mode = parameterStore.get("FZ", "Mode").getI();
-
- if (mode == 0 || mode >= 4)
- {
- numDraw = 0;
- }
- else
- {
- makeDrawList();
- cut(" Station", station, "==", mode - 1);
- }
- cut("FZ", "RPCGasGap", " RPC Gas Gap", gasGap);
- }
-
- protected ACoord getFZUser()
- {
- makeDrawListFZ();
- double[][][] hv = new double[2][numDraw][];
- int[] index = new int[numDraw];
-
- for (int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
-
- index[i] = list;
- if (measuresPhi[list])
- {
- hv[0][i] = AMath.xBox(z[list], length[list] / 2.);
- hv[1][i] = AMath.yBox(Math.toDegrees(phi[list]), Math.toDegrees((width[list] / 2.) / rho[list]));
- }
- else
- {
- double zC = z[list];
- double r = rho[list];
- double cosPhi = Math.cos(phi[list]);
- double sinPhi = Math.sin(phi[list]);
- double phiSector = sector[list] * AMath.PI_BY_8;
- double cosPhiSector = Math.cos(phiSector);
- double sinPhiSector = Math.sin(phiSector);
- double d = length[list] / 2.;
- double w = width[list] / 2.;
- double x = r * cosPhi;
- double y = r * sinPhi;
- double dx = d * sinPhiSector;
- double dy = d * cosPhiSector;
- double phi1 = Math.toDegrees(Math.atan2(y - dy, x + dx));
- double phi2 = Math.toDegrees(Math.atan2(y + dy, x - dx));
- hv[0][i] = AMath.xBox(zC, w);
- hv[1][i] = AMath.yBox((phi1 + phi2) / 2., (phi1 - phi2) / 2.);
-
- }
- }
- return new ACoord(hv, index, this).includePhiWrapAround("FZ");
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/data/ARVxData.java b/graphics/AtlantisJava/src/atlantis/data/ARVxData.java
deleted file mode 100644
index 6d27099259a..00000000000
--- a/graphics/AtlantisJava/src/atlantis/data/ARVxData.java
+++ /dev/null
@@ -1,1043 +0,0 @@
-/*
- * CAUTION: When working on this class, remember that the number of vertices
- * is not a fixed number for an event. If the user fits additional
- * vertices in Atlantis, they will be appended to the list. For this
- * reason everything is using ArrayList and not simple arrays.
- */
-
-package atlantis.data;
-
-import java.awt.event.ActionEvent;
-import java.util.ArrayList;
-import java.util.Collection;
-import java.util.HashSet;
-import java.util.Iterator;
-import java.util.Set;
-import java.util.Vector;
-
-import javax.swing.AbstractAction;
-import javax.swing.Action;
-import javax.swing.tree.DefaultMutableTreeNode;
-
-import atlantis.canvas.ACanvas;
-import atlantis.event.AEvent;
-import atlantis.event.AData;
-import atlantis.event.AAssociation;
-import atlantis.globals.AGlobals;
-import atlantis.graphics.ACoord;
-import atlantis.list.AList;
-import atlantis.list.AListManager;
-import atlantis.output.ALogInterface;
-import atlantis.output.AOutput;
-import atlantis.parameters.AParameterUtilities;
-import atlantis.projection.AProjection3D;
-import atlantis.projection.AProjectionVP;
-import atlantis.utils.AAtlantisException;
-import atlantis.utils.AHashMap;
-import atlantis.utils.ALogger;
-
-import static atlantis.data.AVertex.Type.*;
-
-/**
- * Stores Reconstructed vertices formed for fitting groups
- * of tracks. There may not be any reconstructed vertices when a new event
- * is read in. However, empty datatype ARVxData is always created within
- * the AEvent instance. RVx instances may be added at run time by the user
- * when the vertex fitter algorithm is run inside Atlantis.
- *
- * @author Gary Taylor
- */
-public class ARVxData extends AData
-{
- private static ALogger logger = ALogger.getLogger(ARVxData.class);
-
- // size of the arrays with coordinates of the RVx ellipse,
- // size of martices
- private static final int SIZE = 3;
-
- // vertices - saved reconstructed vertices, instances of AVertex
- private ArrayList<AVertex> vertices = new ArrayList<AVertex>();
- // tracksIndex - indices of tracks (starting from 0)
- private ArrayList<int[]> tracksIndex = new ArrayList<int[]>();
- // tracksId - IDs of tracks (as read from event file)
- private ArrayList<int[]> tracksId = new ArrayList<int[]>();
- private ArrayList<String> tracksCollection = new ArrayList<String>();
- private ArrayList<Boolean> drawFlag = new ArrayList<Boolean>();
- // false - RVx calculated in Atlantis, true - RVx calculated in Athena
- private ArrayList<Boolean> athenaOrigin = new ArrayList<Boolean>();
-
- // array of flags 1 - is primary vertex candidate, this
- // attribute should be accessed only during event finalise phase
- private int[] primVxCand = null;
-
- /** Vertex type from Athena: for types see
- * http://alxr.usatlas.bnl.gov/lxr/source/atlas/Tracking/TrkEvent/TrkEventPrimitives/TrkEventPrimitives/VertexType.h */
- private int[] vertexType = null;
-
- /** Array containing number of tracks associated with each vertex. */
- private int[] numTracks = null;
-
- /** Flag whether track numbers are consistent: see Trac bug #551 */
- private boolean hasConsistentTrackNumbers;
-
- // numData (as at all other datatypes) is used instead of numVertices
- // numData variable is referenced from ADrawnGraphics2D (by .getNumData
- // method) and since it wasn't set properly in case of RVx it was crashing
- // in ADrawnGraphics2D.drawLine() [when rubberbanding over RVx object]
-
- public String getParameterGroup()
- {
- return "RVx";
- }
-
- @Override
- public String getName()
- {
- return "RVx";
- }
-
- public String getNameScreenName()
- {
- return "RecVertex";
- }
-
- /**
- * This constructor is called when RVx datatype is found in the event file.
- * This RVx data was produced in Athena.
- * @param p elements within RVx element in JiveXML input: map of names to values
- * @param e parent event
- * @throws AAtlantisException if failing to create data
- */
- ARVxData(AHashMap p, AEvent e) throws AAtlantisException
- {
- super(p,e);
-
- int[] tracks = p.getIntArray("tracks");
- numTracks = p.getUnsureIntArray("numTracks");
- if (numTracks == null) numTracks = new int[numData];
- float[] z = p.getFloatArray("z");
- float[] y = p.getFloatArray("y");
- float[] x = p.getFloatArray("x");
- float[] covMatrix = p.getFloatArray("covMatrix");
- float[] chi2 = p.getFloatArray("chi2");
- String[] storegateKeys = null;
-
- // Check whether numbers of tracks agree.
- hasConsistentTrackNumbers = false;
- if (tracks!=null) {
- int numTrackIds = tracks.length;
- int numTracksFromVertices = 0;
- for (int numTracksFromVertex : numTracks) {
- numTracksFromVertices += numTracksFromVertex;
- }
- if (numTracksFromVertices == numTrackIds) {
- hasConsistentTrackNumbers = true;
- }
- }
- if (!hasConsistentTrackNumbers) {
- logger.error("RVx: numbers of tracks are inconsistent.");
- }
-
- if(p.getStringArray("sgkey") != null)
- {
- storegateKeys = p.getStringArray("sgkey");
- }
- else
- {
- storegateKeys = new String[numData];
- for (int i = 0; i < numData; i++)
- {
- storegateKeys[i] = "n/a";
- }
- }
-
- // Allowed to be null if element not in JiveXML.
- vertexType = p.getUnsureIntArray("vertexType");
-
- primVxCand = p.getUnsureIntArray("primVxCand");
- if (primVxCand == null) primVxCand = new int[numData];
-
- if (hasConsistentTrackNumbers) createVertexTrackAssociations(tracks, storegateKeys);
-
- double[] pos = new double[SIZE];
- double[][] cov = new double[SIZE][SIZE];
- int[] tracksIdArray = null;
- int[] tracksIndexArray = null;
-
- int n = 0;
- int m = 0;
- for (int i = 0; i < numData; i++)
- {
- // x, y, z coordinates of the RVx ellipse
- pos[0] = x[i];
- pos[1] = y[i];
- pos[2] = z[i];
-
- // covMatrix, resp. 3x3 cov array
- // numbers are too small, so JiveXML multiplies by 10k, here inverse
- // [the same happens with covMatrix for tracks - AHelixData class]
- for (int j = 0; j < SIZE; j++)
- {
- for (int k = 0; k < j + 1; k++)
- {
- cov[j][k] = covMatrix[n] / 10000;
- cov[k][j] = cov[j][k];
- n++;
- }
- }
-
- AVertex vertex = new AVertex(chi2[i], pos, cov);
- vertices.add(vertex); // new vertex
-
- // Only save track details if data are consistent.
- if (hasConsistentTrackNumbers) {
- tracksIdArray = new int[numTracks[i]];
- tracksIndexArray = new int[numTracks[i]];
- for (int j = 0; j < numTracks[i]; j++)
- {
- tracksIdArray[j] = tracks[m];
- // should be removed - problem that IDs run from 1 and indices
- // from 0 - will be fixed
- tracksIndexArray[j] = tracks[m] - 1;
- m++;
- }
- tracksIndex.add(tracksIndexArray.clone()); // save indices of tracks
- tracksId.add(tracksIdArray.clone()); // save IDs of tracks
- }
-
- // save storeGateKey of the Tracks which form this vertex
- tracksCollection.add(storegateKeys[i]);
- drawFlag.add(new Boolean(true));
- athenaOrigin.add(new Boolean(true));
- } // for(int i = 0; i < numData; i++)
- } // ARVxData() ---------------------------------------------------------
-
-
- /**
- * Create vertex-track associations. and adds them to the event's association manager.
- * @param tracks array of track ID numbers
- * @param storegateKeys array of storegate keys, one per vertex
- * Also uses numTracks: number of tracks associated with each vertex.
- */
- private void createVertexTrackAssociations(int[] tracks, String[] storegateKeys) {
- // Create a list of unique storegate keys.
- Vector<String> uniqueStoregateKeys = new Vector<String>();
- if(!storegateKeys[0].equals("n/a")){
- uniqueStoregateKeys.add(storegateKeys[0]);
- }
- for(int i = 0; i < storegateKeys.length; i++){
- if(storegateKeys[i].equals("n/a")){
- continue;
- }
- // Check if track particle type already added to list of storegate keys
- boolean inVector = false;
- for (String sgKey : uniqueStoregateKeys) {
- if (sgKey.equals(storegateKeys[i])) {
- inVector = true;
- break;
- }
- }
- // If storegate key is not in the list, it is added.
- if(!inVector){
- uniqueStoregateKeys.add(storegateKeys[i]);
- }
- }
- // Create new association int array for each unique storegate key.
- for(int i = 0; i < uniqueStoregateKeys.size(); i++){
- int trackCount = 0;
- Vector<Integer> TrkNum = new Vector<Integer>();
- Vector<Integer> Track = new Vector<Integer>();
- // Creating vectors of the 'number of tracks associated to each list' and 'track Ids'
- for(int j = 0; j < storegateKeys.length; j++){
- if(uniqueStoregateKeys.get(i).equals(storegateKeys[j])){
- TrkNum.add(numTracks[j]);
- for(int k = trackCount; k < trackCount + numTracks[j]; k++){
- Track.add(tracks[k]);
- }
- }
- trackCount += numTracks[j];
- }
- //Converting vectors to int[]
- int[] assocTracks = new int[Track.size()];
- for(int j = 0; j < Track.size(); j++){
- assocTracks[j] = Track.get(j);
- }
- int[] numTrks = new int[TrkNum.size()];
- for(int j = 0; j < TrkNum.size(); j++){
- numTrks[j] = TrkNum.get(j);
- }
- //Creating associations
- AAssociation assoc = new AAssociation("RVx" + getStoreGateKey(),
- "InDetTrack" + uniqueStoregateKeys.get(i), numTrks,
- assocTracks, event);
- event.getAssociationManager().add(assoc);
- }
- }
-
- /**
- * Redefined inherited method AData.getIdFromIndex()
- * the array int[] id is not used in this class (unlike other types) so
- * AData.getIdFromIndex() was crashing at RVx since this array was empty
- * listdl[] array (also inherited from AData) should be properly handled
- * in this class (used to crash when rubberbanding over displayed RVx)
- * @param index int
- * @return int
- */
- @Override
- public int getIdFromIndex(int index)
- {
- return listdl[index];
- } // getIdFromIndex() -----------------------------------------------------
-
- /**
- *
- * @param listOfTracksToVertex int[] - list of track indices (internal
- * Atlantis indices starting from 0)
- * @param key - Track collection storeGateKey
- */
- private void createVertexFromTracks(int[] listOfTracksToVertex, String key)
- {
-
- //Retrieving/checking for pre-existing assocation
- int[][] assoc = event.getAssociationManager().get("RVx","InDetTrack" + key);
- if(assoc == null){
- //Create new association for the between selected tracks and the new vertex
- int[] numTracks2 = new int[1];
- numTracks2[0] = listOfTracksToVertex.length;
- event.getAssociationManager().add(new AAssociation("RVx","InDetTrack" + key, numTracks2, listOfTracksToVertex, event));
- }else{//if assocation already exists add new one to it
- //Remove old assocation
- event.getAssociationManager().remove("InDetTrack" + key + "RVx");
- //Create new assocation by copying old one and adding extra line at the end.
- int[][] newAssoc = new int[assoc.length + 1][];
- for(int i = 0; i < newAssoc.length; i++){
- if(i == assoc.length){
- newAssoc[i] = listOfTracksToVertex;
- }else{
- newAssoc[i] = assoc[i];
- }
- }
- //recreating assocation
- event.getAssociationManager().add(new AAssociation("RVx","InDetTrack" + key, newAssoc, event));
- }
-
-
-
- ATrackData aRTr = null;
- aRTr = event.getTrackData("InDetTrack", key);
- if (aRTr == null)
- {
- return;
- }
- // get helices of the appropriate tracks, helices are access by indices
- // save the IDs of tracks into trackIdLocal which will be copied to tracksId
- int[] trackIdLocal = new int[listOfTracksToVertex.length];
- AHelix[] thisHelGoToFitter = new AHelix[listOfTracksToVertex.length];
- for (int j = 0; j < listOfTracksToVertex.length; j++)
- {
- AHelix helix = aRTr.getModifiableHelix(listOfTracksToVertex[j]);
- if (helix == null) {
- AOutput.alwaysAppend("\nOne or more of the selected tracks do not have perigee parameters, "
- + "the vertex cannot be created\n", ALogInterface.BAD_COMMAND);
- return;
- }
- thisHelGoToFitter[j] = helix;
- trackIdLocal[j] = aRTr.getIdFromIndex(listOfTracksToVertex[j]);
- }
-
-
- double xVtx = parameterStore.get("Event", "XVtx").getD();
- double yVtx = parameterStore.get("Event", "YVtx").getD();
- double zVtx = parameterStore.get("Event", "ZVtx").getD();
- AVertex startingPoint = new AVertex(new double[] { xVtx, yVtx, zVtx });
- try
- {
- // RuntimeException is thrown - no vertex found or goes on (new vertex)
- AVertex vertex = AVertexFit.fitVertex(startingPoint, thisHelGoToFitter);
- vertices.add(vertex); // new vertex
- tracksIndex.add(listOfTracksToVertex.clone()); // save indices of tracks
- tracksId.add(trackIdLocal.clone()); // save IDs of tracks
- tracksCollection.add(key);
- drawFlag.add(new Boolean(true));
- athenaOrigin.add(new Boolean(false));
-
- int[] newNumTracks = new int[numData+1];
- int[] newPrimVxCand = new int[numData+1];
- for (int i=0; i<numData; i++) {
- newNumTracks[i] = numTracks[i];
- newPrimVxCand[i] = primVxCand[i];
- }
- numTracks = newNumTracks;
- primVxCand = newPrimVxCand;
- numTracks[numData] = listOfTracksToVertex.length;
- primVxCand[numData] = 2;
-
- if (vertexType != null) {
- int[] newVertexType = new int[numData+1];
- for (int i=0; i<numData; i++) {
- newVertexType[i] = vertexType[i];
- }
- vertexType = newVertexType;
- vertexType[numData] = 2;
- }
-
- double[] par = vertex.getPosition();
- double Vx = par[0];
- double Vy = par[1];
- // temp set axis and orientation of 3D rotation wrt last vertex
- // adjust the starting point of the tracks according to the vertex
- double Vz = par[2];
- for (int j = 0; j < thisHelGoToFitter.length; j++)
- {
- double a = Vx - xVtx;
- double b = Vy - yVtx;
- double c = Vz - zVtx;
- double size = Math.sqrt(a * a + b * b + c * c);
- parameterStore.get("3D", "xAxis").setD(a / size);
- parameterStore.get("3D", "yAxis").setD(b / size);
- parameterStore.get("3D", "zAxis").setD(c / size);
- thisHelGoToFitter[j].setPhiStartByXYPoint(Vx, Vy);
- }
- AOutput.alwaysAppend("\n" + getHitInfo(numData) + "\n", ALogInterface.NORMAL);
- numData++;
- makeDrawList();
- }
- catch (RuntimeException e)
- {
- StringBuilder temp = new StringBuilder("\nRVx: tracks (");
- for (int i = 0; i < listOfTracksToVertex.length; i++)
- {
- if (i > 0)
- {
- temp.append(", ");
- }
- // the tracks were accessed by indices but user wants to see
- // IDs like pick prints (listOfTracksToVertex[] - indices)
- temp.append(aRTr.getIdFromIndex(listOfTracksToVertex[i]));
- }
- AOutput.alwaysAppend(temp + ")\n not originating from a common vertex\n", ALogInterface.NORMAL);
- throw e;
- }
- } // createVertexFromTracks() -------------------------------------------
-
- /**
- * 'Colour by vertex type' option, that allows to colour the vertices depending on whether they are primary,
- * secondary or other vertices.
- */
- protected void colorbyVertexType() {
-
- int pri = parameterStore.get("RVx", "PriVxColor").getI();
- int sec = parameterStore.get("RVx", "SecVxColor").getI();
- int res = parameterStore.get("RVx", "RestVxColor").getI();
-
- if (vertexType!=null) {
- for (int i=0; i<numData; ++i) {
- int typeId = vertexType[i];
- AVertex.Type type = AVertex.Type.typeFromId(typeId);
- switch (type) {
- case PRIMARY:
- case DUMMY:
- color[i] = (byte) pri;
- break;
- case SECONDARY:
- color[i] = (byte) sec;
- break;
- case TEMPV0LAMBDA:
- color[i] = (byte) sec;
- break;
- case TEMPV0LAMBDABAR:
- color[i] = (byte) sec;
- break;
- case TEMPKSHORT:
- color[i] = (byte) sec;
- break;
- case PILEUP:
- case CONVERSION:
- case V0:
- case KINK:
- color[i] = (byte) res;
- break;
- default:
- color[i] = (byte) res;
-
- }
- }
- }
- else if (primVxCand!=null) { // use primary vertex candidate flag as fall-back if vertex type not available
- for (int i=0; i<numData; ++i) {
- if (primVxCand[i]==1) {
- color[i] = (byte) pri;
- }
- else {
- color[i] = (byte) res;
- }
- }
- }
- else { // if no vertex type information, use constant colour
- colorByConstant();
- }
- }
-
- protected int internalColor()
- {
- int colorFunction = parameterStore.get(PARAMETER_GROUP, "ColorFunction").getI();
-
- // The number of vertices can increase when the user fits a vertex in
- // Atlantis, make sure the color array also increases in size then
- if (numData > color.length)
- color = new byte[numData];
-
- if (colorFunction == 0)
- {
- colorByConstant();
- }
- else if(colorFunction == 1)
- {
- colorByIndex();
- }
- else if (colorFunction == 2)
- {
- colorbyVertexType();
- }
- return 0;
- } // internalColor() ----------------------------------------------------
-
- @Override
- public void makeDrawList()
- {
- numDraw = 0;
- listdl = new int[numData];
- for (int i = 0; i < numData; i++) {
- if (drawFlag.get(i).booleanValue()) {
- listdl[numDraw] = i;
- numDraw++;
- }
- }
- this.cutTracksByVertexType();
- this.applyCuts();
- }
-
- private void cutTracksByVertexType() {
- numDraw = 0;
- listdl = new int[numData];
- for (int i = 0; i < numData; i++) {
- if (drawFlag.get(i).booleanValue()) {
- // All=0, Primary=1, Secondary=2, Rest=3
- int vertexTypeSelected = parameterStore.get("CutsObjects", "vertextype").getI();
- if (vertexTypeSelected==0) {
- listdl[numDraw] = i;
- numDraw++;
- }
- if (vertexTypeSelected==1) { // primary
- if (vertexType!=null) {
- int typeId = vertexType[i];
- AVertex.Type type = AVertex.Type.typeFromId(typeId);
- if (type == PRIMARY || type == DUMMY){
- listdl[numDraw] = i;
- numDraw++;
- }
- }
- }
- if (vertexTypeSelected==2){
- if (vertexType!=null) {
- int typeId = vertexType[i];
- AVertex.Type type = AVertex.Type.typeFromId(typeId);
- if (type == SECONDARY || type == TEMPV0LAMBDA || type == TEMPV0LAMBDABAR || type == TEMPKSHORT){
- listdl[numDraw] = i;
- numDraw++;
- }
- }
- }
- if (vertexTypeSelected==3){
- if (vertexType!=null) {
- int typeId = vertexType[i];
- AVertex.Type type = AVertex.Type.typeFromId(typeId);
- if (type == PILEUP || type == CONVERSION || type == V0 || type == KINK){
- listdl[numDraw] = i;
- numDraw++;
- }
- }
- }
- }
- }
- }
-
- public String getHitInfo(int index)
- {
- boolean athenaOriginBoolean = athenaOrigin.get(index).booleanValue();
- String origin = (athenaOriginBoolean == true) ? "Athena" : "Atlantis";
- int simpleOutput = AGlobals.instance().getSimpleOutput();
- if(simpleOutput>0) return getNameScreenName()+" index: " + index+
- "\n calculated in "+origin;
-
- StringBuilder temp = new StringBuilder();
- temp.append("\n" + getNameScreenName() + " (index: " + index + ") (calculated in " + origin + ")\n" + " type of Track: " + tracksCollection.get(index) + "\n");
- temp.append(" tracks IDs = ");
- boolean tracksIDsKnown = false;
- if (tracksId.size() > 0) {
- int[] tracksIdInVertex = (tracksId.get(index));
- for (int i = 0; i < tracksIdInVertex.length; i++)
- {
- int id2 = tracksIdInVertex[i];
- // if the JiveXML knows that vertex creates X number of
- // tracks but doesn't know the ID, -1 is put as tracks ID
- // list of -1 doesn't need to be printed
- if (id2 > -1)
- {
- tracksIDsKnown = true;
- if (i > 0)
- {
- temp.append(",");
- }
- temp.append(tracksIdInVertex[i]);
- }
- }
- }
- if (!tracksIDsKnown) temp.append("n/a");
- //To display in the output screen the vertex type number and description when this is selected
- if (vertexType!=null) {
- int typeId = vertexType[index];
- AVertex.Type type = AVertex.Type.typeFromId(typeId);
- String vertexInfo = String.format("%nVertex type = %d (%s)", typeId, type.description);
- temp.append(vertexInfo);
- }
- temp.append("\nPrimary candidate status = " + primVxCand[index]);
- temp.append("\nnumTracks = " + numTracks[index]);
- temp.append("\n" + vertices.get(index));
- return temp.toString();
- } // getHitInfo() -------------------------------------------------------
-
- @Override
- public ACoord getYXUser()
- {
- makeDrawList();
- double hv[][][] = new double[2][numDraw][];
- int[] index = new int[numDraw];
- for (int i = 0; i < numDraw; i++)
- {
- AVertex vertex = vertices.get(listdl[i]);
- double[][] p = vertex.getYXEllipse();
- hv[0][i] = p[0];
- hv[1][i] = p[1];
-
- index[i] = listdl[i];
- }
- return new ACoord(hv, index, this);
- } // getYXUser() --------------------------------------------------------
-
- @Override
- public ACoord getXZUser()
- {
- makeDrawList();
- double hv[][][] = new double[2][numDraw][];
- int[] index = new int[numDraw];
- for (int i = 0; i < numDraw; i++)
- {
- AVertex vertex = vertices.get(listdl[i]);
- double[][] p = vertex.getXZEllipse();
- hv[0][i] = p[0];
- hv[1][i] = p[1];
- index[i] = listdl[i];
- }
- return new ACoord(hv, index, this);
- } // getXZUser() --------------------------------------------------------
-
- @Override
- public ACoord getYZUser()
- {
- makeDrawList();
- double hv[][][] = new double[2][numDraw][];
- int[] index = new int[numDraw];
- for (int i = 0; i < numDraw; i++)
- {
- AVertex vertex = vertices.get(listdl[i]);
- double[][] p = vertex.getYZEllipse();
- hv[0][i] = p[0];
- hv[1][i] = p[1];
- index[i] = listdl[i];
- }
- return new ACoord(hv, index, this);
- } // getYZUser() --------------------------------------------------------
-
- @Override
- public ACoord getRZUser()
- {
- makeDrawList();
- double hv[][][] = new double[2][numDraw][];
- int[] index = new int[numDraw];
- for (int i = 0; i < numDraw; i++)
- {
- AVertex vertex = vertices.get(listdl[i]);
- //TODO: make "RZ ellipse"
- double[][] p = vertex.getRZEllipse();
- hv[0][i] = p[0];
- hv[1][i] = p[1];
- index[i] = listdl[i];
- }
- return new ACoord(hv, index, this);
- } // getRZUser() --------------------------------------------------------
-
- @Override
- protected ACoord get3DUser()
- {
- makeDrawList();
- double h[] = new double[numDraw];
- double v[] = new double[numDraw];
- int[] index = new int[numDraw];
- for (int i = 0; i < numDraw; i++)
- {
- double[] hvo = AProjection3D.getRotated(vertices.get(listdl[i]).getPosition());
- h[i] = hvo[0];
- v[i] = hvo[1];
- index[i] = listdl[i];
- }
- return new ACoord(h, v, index, this);
- } // get3DUser() --------------------------------------------------------
-
- @Override
- public ACoord getFZUser()
- {
- makeDrawList();
- double h[] = new double[numDraw];
- double v[] = new double[numDraw];
- int[] index = new int[numDraw];
- for (int i = 0; i < numDraw; i++)
- {
- AVertex vertex = vertices.get(listdl[i]);
- double[] xyz = vertex.getPosition();
- double phi = vertex.getPhi();
- double z = xyz[2];
- h[i] = z;
- v[i] = Math.toDegrees(phi);
- index[i] = listdl[i];
- }
- return new ACoord(h, v, index, this).includePhiWrapAround("FZ");
- } // getFZUser() --------------------------------------------------------
-
- @Override
- public ACoord getFRUser()
- {
- makeDrawList();
- double h[] = new double[numDraw];
- double v[] = new double[numDraw];
- int[] index = new int[numDraw];
- for (int i = 0; i < numDraw; i++)
- {
- AVertex vertex = vertices.get(listdl[i]);
- double rho = vertex.getRho();
- double phi = vertex.getPhi();
- h[i] = rho;
- v[i] = Math.toDegrees(phi);
- index[i] = listdl[i];
- }
- return new ACoord(h, v, index, this).includePhiWrapAround("FR");
- } // getFRUser() --------------------------------------------------------
-
- @Override
- public ACoord getVPUser()
- {
- makeDrawList();
- double h[] = new double[numDraw * 2];
- double v[] = new double[numDraw * 2];
- int[] index = new int[numDraw * 2];
- double[] sign = new double[] { -1., 1. };
- int num = 0;
-
- for (int i = 0; i < numDraw; i++)
- {
- AVertex vertex = vertices.get(listdl[i]);
- double[] xyz = vertex.getPosition();
- // if rho is 0, AMath.eta() divides by 0, since it's real type,
- // Infinity is returned, program doesn't crash, vertex is not drawn
- // proper would be to test all rho > 0.01cm values in advance
- double rho = vertex.getRho();
- double phi = vertex.getPhi();
- double z = xyz[2];
- double eta = AParameterUtilities.eta(z, rho);
- double delEta = AProjectionVP.getDeltaEta(rho, z);
- for (int j = 0; j < 2; j++)
- {
- h[num] = eta + sign[j] * delEta;
- v[num] = Math.toDegrees(phi);
- index[num] = listdl[i];
- num++;
- }
- }
- return new ACoord(h, v, index, this).includePhiWrapAround("VP");
- } // getVPUser() --------------------------------------------------------
-
- protected void applyCuts()
- {
- cutIndex();
-
- float[] phi = new float[numDraw];
- float[] eta = new float[numDraw];
- for(int i=0; i<numDraw; i++)
- {
- AVertex vertex = vertices.get(listdl[i]);
- phi[i] = (float) vertex.getPhi();
- double z = vertex.getPosition()[2];
- eta[i] = (float) AParameterUtilities.eta(z, vertex.getRho());
- }
- cutPhi(phi);
- cutEta(eta);
-
- cut("CutsInDet", "NumRVxTracks", " Ntrack", numTracks);
- cut("CutsInDet", "PrimaryRVx", " Primary", primVxCand);
-
- } // applyCuts() --------------------------------------------------------
-
- /**
- * @param nodes Collection
- * @return Action[]
- * Method returns either empty list of Actions or Vertex item after the
- * right mouse click on the list (in the list dialog)
- * Vertex only appear if there is one type of reconstructed tracks in the
- * list and no other datatype
- */
- @Override
- public Action[] getActions(Collection nodes)
- {
- if (nodes.size() != 1)
- {
- return new Action[0];
- }
- final DefaultMutableTreeNode node = (DefaultMutableTreeNode) (nodes.iterator().next());
- if (!node.getAllowsChildren())
- {
- return new Action[0];
- }
- AList[] list = AListManager.getInstance().getChildren(node);
- if (list == null)
- {
- return new Action[0];
- }
- Set<Integer> tracks = new HashSet<Integer>();
- Set<Integer> tracksID = new HashSet<Integer>();
- // iterate over the items in the list (set of whichever datatypes)
- // condition in this loop assures that 'Vertex *' action appears only
- // if there is/are set(s) of one type of reconstructed tracks and no
- // other types. the condition used to be
- // list[i].getSource() == ... .event.getRTrData() which was
- // a method depending on the current selected Hits-to-RTr association
- for (int i = 0; i < list.length; i++)
- {
- // tests that there is either type of reconstructed tracks in the list
- if (list[i].getSource() instanceof ATrackData)
- {
- // test that there is just one type of reconstructed tracks if
- // there are more than one item in list
- if (i > 0)
- {
- String key1 = list[i - 1].getSource().getStoreGateKey();
- String key2 = list[i].getSource().getStoreGateKey();
- if (!(key1 == null && key2 == null) && !key1.equals(key2))
- {
- String msg = "info: Vertexing is available if only one " +
- "Track collection is chosen in the list. " +
- " (select: InDet->Track->Track Collections)\n";
- AOutput.alwaysAppend(msg, ALogInterface.NORMAL);
- return new Action[0];
- }
- }
- // tests passed - save indices of the tracks from the hashtable
- for (int j = 0; j < list[i].getItems().length; j++)
- {
- int index = list[i].getItems()[j];
- int id2 = list[i].getSource().getIdFromIndex(index);
- tracks.add(new Integer(index));
- tracksID.add(new Integer(id2));
- }
- }
- else
- {
- return new Action[0];
- }
- } // for
- int numTracks2 = tracks.size();
- if (numTracks2 < 2)
- {
- return new Action[0];
- }
- final String trackName = list[0].getSource().getNameScreenName();
- final String trackStoreGateKey = list[0].getSource().getStoreGateKey();
- final int[] trackNumbers = new int[numTracks2]; // indices of tracks
- final int[] trackIDs = new int[numTracks2]; // IDs of tracks
- Iterator<Integer> i = tracks.iterator();
- int n = 0;
- while (i.hasNext())
- {
- trackNumbers[n++] = (i.next()).intValue();
- }
- i = tracksID.iterator();
- n = 0;
- while (i.hasNext())
- {
- trackIDs[n++] = (i.next()).intValue();
- }
- Action[] action = new Action[1]; // only one action will be displayed
- // after removing interactive Athena
- action[0] = new AbstractAction("Vertex " + trackName + " " + trackStoreGateKey + " in Atlantis")
- {
- public void actionPerformed(ActionEvent e)
- {
- try
- {
- createVertexFromTracks(trackNumbers, trackStoreGateKey);
- // maybe should be all windows
- ACanvas.getCanvas().getCurrentWindow().repaintFromScratch();
- node.setUserObject(new AList(ARVxData.this, numData - 1));
- }
- catch (Exception ee)
- {
- // this exception was initially completely ignored (empty
- // block) - can't actually see the reason why it is thrown
- // at the end of createVertexFromTracks since it should be
- // ignored. whether or not the exception occures tells
- // whether the tracks are coming from the common vertex
-
- logger.debug("ARVxData.getActions() exception: " + ee.getMessage(), ee);
- }
- }
- };
-
- return action;
- } // getActions() -------------------------------------------------------
-
-
- /**
- * The method is called when Remove action is selected after right-click
- * on the list item. There may be vertices coming from different types of
- * tracks, trackType variable assures that the current reconstructed track
- * instance is retrieved and the helix paremeters set on corrent tracks
- * @param index int[]
- */
- @Override
- public void remove(int[] index)
- {
- String key = null;
- ATrackData aRTr = null;
- for (int i = 0; i < index.length; ++i)
- {
- drawFlag.set(index[i], new Boolean(false));
- key = tracksCollection.get(index[i]);
- aRTr = event.getTrackData("InDetTrack", key);
- if (aRTr != null)
- {
- int[] tracksInVertex = (tracksIndex.get(index[i]));
- for (int j = 0; j < tracksInVertex.length; ++j)
- {
- aRTr.getModifiableHelix(tracksInVertex[j]).setPhiStartByXYPoint(0., 0.);
- }
- } // if
- } // for
- } // remove() -----------------------------------------------------------
-
- /**
- * if RVx (with numData > 0) is present in this event, cut Tracks
- * forming vertices when tracks are drawn as polylines
- */
- public void cutTracksToRVx(AEvent event)
- {
- if (!hasConsistentTrackNumbers) return;
- for (int i = 0; i < numData; i++)
- {
- boolean origin = athenaOrigin.get(i).booleanValue();
- if (origin)
- {
- // true - RVx coming from Athena -> cut the track if its
- // storeGateKey is known (was saved into tracksCollection)
- String trackKey = tracksCollection.get(i);
- ATrackData tracks = event.getTrackData("InDetTrack", trackKey);
- if (tracks != null)
- {
- int[] tracksIdInVertex = (tracksId.get(i));
- if (tracksIdInVertex.length < 2) //ACH - put some more cuts on this?
- continue;
- AHelix[] thisHelGoToFitter = new AHelix[tracksIdInVertex.length];
- AVertex vertex = vertices.get(i);
- double[] par = vertex.getPosition();
- double Vx = par[0];
- double Vy = par[1];
- for (int j = 0; j < tracksIdInVertex.length; j++)
- {
- int id2 = tracksIdInVertex[j];
- // if the JiveXML knows that vertex creates X number of
- // tracks but doesn't know the ID, -1 is put as tracks ID
- // skip cutting tracks - ID is actually unknown
- if (id2 > -1)
- {
- thisHelGoToFitter[j] = tracks.getModifiableHelix(id2);
- thisHelGoToFitter[j].setPhiStartByXYPoint(Vx, Vy);
- }
- }
- } // if(tracks != null)
- }
- }
- } // cutTracksToRVx() ----------------------------------------------------
-
-
-
- /**
- * Returns the values of primary vertex for the current event using the
- * first vertex in this RVx data if it exists.
- * @return double[3] or null
- */
- public double[] getPrimaryVertex()
- {
- double[] vtx = null; // vertex position (x, y, z order)
-
- if (!(numData > 0))
- {
- // Check this? If we have no vertices, want to get a primary vertex
- // from somewhere else
- return vtx; // null
- }
-
- // if datatype contains primVxCand subtag, then take first item
- // flagged 1 (primary vertex candidate) otherwise first item of
- // the whole datatype
- if(primVxCand != null)
- {
- for(int i = 0; i < numData; i++)
- {
- if(primVxCand[i] == 1)
- {
- vtx = vertices.get(i).getPosition();
- break;
- }
- }
- if(vtx == null)
- {
- // none of the vetices had flag 1, take the first one anyway
- vtx = vertices.get(0).getPosition();
- }
- }
- else
- {
- // primVxCand is not available, take the first item
- vtx = vertices.get(0).getPosition();
- }
-
- return vtx;
-
- } // getPrimaryVertex() -------------------------------------------------
-
-
-
- /**
- *
- * @param index int
- * @return double[]
- * Returns double array with x, y, z positions of the vertex
- */
- public double[] getVertex(int index)
- {
- double[] vtx = null;
- vtx = vertices.get(index).getPosition();
- return vtx;
-
- } // getVertex() --------------------------------------------------------
-
-
-} // class ARVxData =========================================================
diff --git a/graphics/AtlantisJava/src/atlantis/data/AS3DData.java b/graphics/AtlantisJava/src/atlantis/data/AS3DData.java
deleted file mode 100644
index 62929b6f6b8..00000000000
--- a/graphics/AtlantisJava/src/atlantis/data/AS3DData.java
+++ /dev/null
@@ -1,486 +0,0 @@
-package atlantis.data;
-
-import atlantis.event.AAssociation;
-import atlantis.event.AData;
-import atlantis.event.AEvent;
-import atlantis.globals.AGlobals;
-import atlantis.graphics.ACoord;
-import atlantis.parameters.AParameter;
-import atlantis.parameters.AParameterUtilities;
-import atlantis.utils.AHashMap;
-import atlantis.utils.AMath;
-
-
-/*
- * The input array clusters is being used to contain two types of information
- * for pixel clusters
- * clusters[i][0] = identifier
- * clusters[i][1] = -1
- * for space points from 2 strip clusters it contains the identifiers of the
- * individual strips
- * clusters[i][0] = identifier of first strip
- * clusters[i][1] = identifier of second strip
- */
-public class AS3DData extends A3DPointData
-{
- private int[][] clusters = null;
- // read from the event file
- protected int[] layer = null;
- private int[] etaModule = null;
- private int[] phiModule = null;
-
- // for use by the filter loop, group[] is filled in by hit filter, other
- // classes contain group functionality as well but currently (2006/08)
- // hit filter takes into account only S3D (SiSpacePoint) data
- protected int[] group = null;
- private double[] eta = null;
-
- private boolean[] pixel = null;
- public static final int PIXEL = -1;
- public static final int CUT_INDET_SCT_ALL = -1;
- public static final int CUT_INDET_SCT_EC_NEG = 0;
- public static final int CUT_INDET_SCT_BARREL = 1;
- public static final int CUT_INDET_SCT_EC_POS = 2;
-
-
-
- public String getParameterGroup()
- {
- return "S3D";
- }
-
-
- public String getName()
- {
- return "S3D";
- }
-
-
- public String getNameScreenName()
- {
- return "SpacePoint";
- }
-
-
- public String getHitInfo(int index)
- {
- int simpleOutput = AGlobals.instance().getSimpleOutput();
- if(simpleOutput>0) return getNameScreenName()+" index: " + index+"\n"+
- AMath.ETA+" = "+String.format("%.3f",eta[index])+"\n "+
- AMath.PHI+" = "+String.format("%.3f",Math.toDegrees(phi[index]))+AMath.DEGREES;
-
- String clId = clusters[index][0] + ", " + clusters[index][1];
- String type = pixel[index] ? " (Pixel hit)" : " (SCT hit)";
-
- String temp = getNameScreenName() + " (id: " + id[index] + " index: " + index + ")" +
- type +
- "\n cluster identifiers: " + clId +
- "\n x = " + String.format("%.3f",x[index]) + " cm" +
- "\n y = " + String.format("%.3f",y[index]) + " cm" +
- "\n z = " + String.format("%.3f",z[index]) + " cm" +
- "\n " + AMath.RHO + " = " + String.format("%.3f",rho[index]) +
- " cm" +
- "\n " + AMath.PHI + " = " +
- String.format("%.3f",Math.toDegrees(phi[index])) +
- AMath.DEGREES + " (" + String.format("%.3f",phi[index]) + " rad)" +
- "\n z = " + String.format("%.3f",z[index]) + " cm" +
- "\n group = " + group[index];
- temp += "\n " + AMath.ETA + " module = ";
- temp += (etaModule != null) ? Integer.toString(etaModule[index]) : "n/a";
- temp += "\n " + AMath.PHI + " module = ";
- temp += (phiModule != null) ? Integer.toString(phiModule[index]) : "n/a";
- temp += super.getHitInfo(index); // finds barcode information
-
- return temp;
-
- } // getHitInfo() ---------------------------------------------------------
-
-
-
- AS3DData(AHashMap p, AEvent e)
- {
- super(p,e);
-
- etaModule = (p.get("etaModule") != null) ? p.getIntArray("etaModule") : null;
- phiModule = (p.get("phiModule") != null) ? p.getIntArray("phiModule") : null;
-
- // use this for now as pixel id have bug i.e. sometimes > 0
- layer = p.getUnknownIntArray("layer");
- if(p.get("layer") == null || p.get("sub") == null)
- {
- calculateLayerSubdetector();
- }
- group = new int[numData];
- eta = new double[numData];
-
- if(p.get("clusters") != null)
- {
- // can only distinguish between SCT and Pixel hits if clusters
- // subtag is available
- pixel = new boolean[numData];
- // save IDs from event file to be available with pick info
- clusters = new int[numData][];
- int[][] assocClusters = new int[numData][];
- int[] temp = p.getIntArray("clusters");
- for(int i = 0; i < numData; i++)
- {
- // save all clusters IDs
- clusters[i] = new int[] { temp[2 * i], temp[2 * i + 1] };
-
- // check if the second number, PIXEL (-1) designates pixel hit
- if(temp[2 * i + 1] != PIXEL)
- {
- // this is SCT spacepoint - has got two clusters
- assocClusters[i] = new int[] { temp[2 * i], temp[2 * i + 1] };
- }
- else
- {
- // this is a pixel spacepoint (second cluster number is -1)
- pixel[i] = true;
-
- // to ignore associtiation between pixel clusters and spacepoints:
- // assocClusters[i] = null;
-
- // taking pixel cluster into account (pixel spacepoint has got
- // only one cluster) (where as SCT spacepoint has got two clusters)
- assocClusters[i] = new int[] { temp[2 * i] };
- }
- }
- event.getAssociationManager().add(new AAssociation(getFullName(), "SiCluster", assocClusters, event));
- event.getAssociationManager().add(new AAssociation(getFullName(), "PixelCluster", assocClusters, event));
- }
- }
-
-
-
- protected void finalizeConstruction()
- {
- super.finalizeConstruction();
- super.calculateAssociationViaClusters();
-
- } // finalizeConstruction() ----------------------------------------------
-
-
-
- protected int internalColor()
- {
- int numColorTypes = super.internalColor();
- int colorFunction = parameterStore.get(PARAMETER_GROUP, "ColorFunction").getI();
- if(colorFunction == numColorTypes + 1)
- {
- colorByGroup();
- }
- else if(colorFunction == numColorTypes + 2)
- {
- colorBy(layer);
- }
- return numColorTypes + 2;
-
- } // internalColor() ----------------------------------------------------
-
-
- protected void colorByGroup()
- {
- byte ungroupedColor;
- if(parameterStore.get(PARAMETER_GROUP, "Ungrouped").getStatus())
- ungroupedColor = (byte) parameterStore.get(PARAMETER_GROUP, "Ungrouped").getI();
- else
- ungroupedColor = (byte) parameterStore.get(PARAMETER_GROUP, "Unconnected").
- getI();
- int numColors = (byte) parameterStore.get("HitColors", "Number").getI();
- numColors = Math.min(7, numColors);
- int[] col = parameterStore.getArray("HitColors", "C1", numColors);
- for(int i = 0; i < numData; i++)
- {
- if(group[i] == 0)
- color[i] = ungroupedColor;
- else
- color[i] = (byte) col[(group[i] - 1) % numColors];
- }
- }
-
-
-
- /**
- * define noise and good hits type = 0 means noise
- * noise hits - hits associated neither with Track not STr
- * good hits - hits associated either with Track or with STr plus
- * group information - set by the AFilter (hit filter)
- */
- protected void setType()
- {
- int[][] assocSTr = event.getAssociationManager().get(getFullName(), "STr");
- int[][] assocRTr = event.getAssociationManager().get(getFullName(), getReconstructedTracks());
- for(int i = 0; i < numData; i++)
- {
- if((assocSTr != null && assocSTr[i] != null) ||
- (assocRTr != null && assocRTr[i] != null) || group[i] > 0)
- {
- type[i] = 1;
- }
- else
- {
- type[i] = 0;
- }
- }
-
- } // setType() ----------------------------------------------------------
-
-
-
- protected void applyCuts()
- {
- cutIndex();
- cutSubdetector();
- cut("CutsInDet", "Layer", " Layer", layer);
- cutPhi(phi);
- cutEta(rho, z);
- cutSimulatedTracks();
- cutReconstructedTracks();
- cut("CutsInDet", "Group", " Group", group);
- if(etaModule != null)
- {
- cut("CutsInDet", "EtaModule", " EtaModule", etaModule);
- }
- if(phiModule != null)
- {
- cut("CutsInDet", "PhiModule", " PhiModule", phiModule);
- }
- }
-
- private void cutSubdetector()
- {
- AParameter subPar = parameterStore.get("CutsInDet", "SCT");
- if(subPar.getI() != -1)
- cutArray(sub, subPar.getI(), "Barrel/Endcap");
- }
-
-
- public int getLayer(int id)
- {
- int layer;
- if(id > -1)
- layer = (id >> 21) & 0xF;
- else
- layer = (id >> 27) & 0x3;
- int sub = getSub(id);
- if(id > -1)
- {
- // strips
- if(sub == ASiClusterData.BARREL)
- layer += 3;
- else
- layer += 11;
- }
- else
- {
- // pixels
- if(sub != ASiClusterData.BARREL)
- layer += 7;
- }
- return layer;
- }
-
-
- public int getSub(int id)
- {
- if(id > -1)
- return(id >> 25) & 0x3;
- else
- return(id >> 29) & 0x3;
- }
-
-
- private void calculateLayerSubdetector()
- {
- final double rhoPixelMax = 24.;
- final double zBarrelPixelMax = 41.;
- final double zBarrelStripsMax = 78.;
- final double[] zEndcapPixel =
- {51., 64., 90.};
- final double[] zEndcapStrips =
- {88., 98., 116., 134., 156., 190., 233.,
- 263.};
- final double[] rhoBarrel =
- {6.74, 11.5, 23., 34., 40., 48.};
- for(int i = 0; i < numData; i++)
- {
- double z = Math.abs(this.z[i]);
- double r = rho[i];
- if(r < rhoPixelMax)
- {
- // .............................................. pixels
- if(z < zBarrelPixelMax)
- {
- // ............................................ barrel
- sub[i] = 1;
- for(int l = 0; l < rhoBarrel.length; l++)
- if(r < rhoBarrel[l])
- {
- layer[i] = l;
- break;
- }
- }
- else
- {
- // ............................................ end cap
- layer[i] = 10;
- for(int l = 0; l < zEndcapPixel.length; l++)
- {
- if(z < zEndcapPixel[l])
- {
- layer[i] = 7 + l;
- break;
- }
- }
- if(this.z[i] < 0)
- sub[i] = 0;
- else
- sub[i] = 2;
- }
- }
- else
- {
- // .............................................. strips
-
- if(z < zBarrelStripsMax)
- {
- // ............................................ BARREL
- sub[i] = 1;
- layer[i] = 6;
- for(int l = 0; l < rhoBarrel.length; l++)
- if(r < rhoBarrel[l])
- {
- layer[i] = l;
- break;
- }
- }
- else
- {
- // ............................................ end cap
- layer[i] = 19;
- for(int l = 0; l < zEndcapStrips.length; l++)
- {
- if(z < zEndcapStrips[l])
- {
- layer[i] = 11 + l;
- break;
- }
- }
- if(this.z[i] < 0)
- sub[i] = 0;
- else
- sub[i] = 2;
- }
- }
- }
- }
-
-
- // drawlist to be used as input to the filter
- public int makeFilterDrawList(double etaRange)
- {
- calculateRhoPhi();
-
- // overwrite the input array to improve speed
- numDraw = 0;
- for(int i = 0; i < numData; i++)
- {
- double eta = AParameterUtilities.eta(z[i], rho[i]);
- this.eta[i] = eta;
- if(eta > -etaRange && eta < etaRange)
- {
- listdl[numDraw++] = i;
- }
- }
-
- return numDraw;
- }
-
-
- public int[] getIntegerEta(int numBins, double etaRange, int[] integerEta)
- {
- // overwrite the input array to improve speed
- double binWidth = 2 * etaRange / numBins;
- double etaRangeOptimised = etaRange + binWidth;
- for(int i = 0; i < numDraw; i++)
- // implicit (int) conversion only does correct thing if positive
- integerEta[i] = (int) ((eta[listdl[i]] + etaRangeOptimised) /
- binWidth);
- return integerEta;
- }
-
-
- public int[] getIntegerPhi(int numBins, double skew, int[] integerPhi)
- {
- calculateRhoPhi();
- // overwrite the input array to improve speed
- double binWidth = 2 * Math.PI / numBins;
- for(int i = 0; i < numDraw; i++)
- {
- // can only be positive
- // add one to treat wraparound efficiently
- double p = phi[listdl[i]] - skew * rho[listdl[i]];
- if(p < 0.)
- p += 2 * Math.PI;
- else if(p > 2 * Math.PI)
- p -= 2 * Math.PI;
- integerPhi[i] = (int) (p / binWidth) + 1;
- }
- return integerPhi;
- }
-
-
- public int[] getLayer(int[] layer)
- {
- for(int i = 0; i < numDraw; i++)
- layer[i] = this.layer[listdl[i]];
- return layer;
- }
-
-
- public void setGroup(int[] group)
- {
- for(int i = 0; i < numData; i++)
- this.group[i] = 0;
- for(int i = 0; i < numDraw; i++)
- this.group[listdl[i]] = group[i];
- }
-
-
- protected ACoord getFRUser()
- {
- if(!parameterStore.get("SiCluster", "Stereo").getStatus())return super.getFRUser();
- makeDrawList();
- double[] h = new double[numDraw];
- double[] v = new double[numDraw];
- int[] index = new int[numDraw];
- for(int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
- h[i] = rho[list];
- v[i] = Math.toDegrees(AParameterUtilities.getPhiStereo(rho[list], phi[list], z[list]));
- index[i] = list;
- }
- return new ACoord(h, v, index, this).includePhiWrapAround("FR");
- }
-
-
- protected ACoord getFZUser()
- {
- if(!parameterStore.get("SiCluster", "Stereo").getStatus())return super.getFZUser();
- makeDrawList();
- double[] h = new double[numDraw];
- double[] v = new double[numDraw];
- int[] index = new int[numDraw];
- for(int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
- h[i] = z[list];
- v[i] = Math.toDegrees(AParameterUtilities.getPhiStereo(rho[list], phi[list], z[list]));
- index[i] = list;
- }
- return new ACoord(h, v, index, this).includePhiWrapAround("FZ");
- }
-
-} // class AS3DData =========================================================
diff --git a/graphics/AtlantisJava/src/atlantis/data/ASMTrData.java b/graphics/AtlantisJava/src/atlantis/data/ASMTrData.java
deleted file mode 100644
index dfd4eb8c63d..00000000000
--- a/graphics/AtlantisJava/src/atlantis/data/ASMTrData.java
+++ /dev/null
@@ -1,626 +0,0 @@
-package atlantis.data;
-
-import atlantis.event.*;
-import atlantis.canvas.AWindow;
-import atlantis.graphics.ACoord;
-import atlantis.graphics.AGraphics;
-import atlantis.parameters.AParameterUtilities;
-import atlantis.projection.AProjection;
-import atlantis.projection.AProjection2D;
-import atlantis.projection.AProjectionVP;
-import atlantis.projection.AProjectionXZ;
-import atlantis.utils.A3Vector;
-import atlantis.utils.A4Vector;
-import atlantis.utils.AHashMap;
-import atlantis.utils.AMath;
-
-/**
- * Simulated particle in the muon system
- */
-
-public class ASMTrData extends AData
-{
- private static final double START_RADIUS = 2.;
- protected int[] code;
- protected int[] particleType;
- protected int[] originVertex;
- protected float[] pT;
- protected float[][] rho;
- protected float[][] phi;
- protected float[][] z;
- protected float[][] x;
- protected float[][] y;
- AHelix[] innerTrack;
- protected int[] type;
- private int[] index;
-
-
- public String getParameterGroup()
- {
- return "SMTr";
- }
-
-
- public String getName()
- {
- return "SMTr";
- }
-
-
- public String getNameScreenName()
- {
- return "SimMuonTrack";
- }
-
-
- ASMTrData(AHashMap p, AEvent e)
- {
- super(p,e);
- rho = new float[2][];
- phi = new float[2][];
- z = new float[2][];
- x = new float[2][];
- y = new float[2][];
- x[0] = new float[numData];
- y[0] = new float[numData];
- rho[0] = p.getFloatArray("rhoVertex");
- phi[0] = p.getFloatArray("phiVertex");
- z[0] = p.getFloatArray("zVertex");
- for(int i = 0; i < numData; ++i)
- {
- x[0][i] = (float) (rho[0][i] * Math.cos(phi[0][i]));
- y[0][i] = (float) (rho[0][i] * Math.sin(phi[0][i]));
- }
- x[1] = (float[]) x[0].clone();
- y[1] = (float[]) y[0].clone();
- z[1] = (float[]) z[0].clone();
- phi[1] = (float[]) phi[0].clone();
- rho[1] = (float[]) rho[0].clone();
- pT = p.getFloatArray("pt");
- code = p.getIntArray("code");
- type = new int[numData];
- particleType = new int[numData];
- originVertex = p.getIntArray("simulatedVertex");
- for(int i = 0; i < numData; i++)
- {
- if(Math.abs(code[i]) > 10)
- // code is being used to store particle code
- particleType[i] = APDGTable.getParticleType(code[i]);
- }
- calculateReasonableEndpoints(p.getFloatArray("phi"),
- p.getFloatArray("eta"));
- double[] phiD = new double[numData];
- float[] phiF = p.getFloatArray("phi");
- for(int i = 0; i < numData; i++)
- phiD[i] = phiF[i];
- index = indexBy(phiD);
- }
-
-
- protected void calculateRhoPhi()
- {
- calculateRhoPhi(x[0], y[0], rho[0], phi[0]);
- calculateRhoPhi(x[1], y[1], rho[1], phi[1]);
- }
-
- private void calculateReasonableEndpoints(float[] phiDir, float[] eta)
- {
- double rhoTo = 1500.;
- double zTo = 2500.;
- int maxPoints = 5;
- double[] d = new double[maxPoints];
- for(int i = 0; i < numData; i++)
- {
- int numPoints = 0;
- //initial point inside volume
- if(rho[0][i] < rhoTo && Math.abs(z[0][i]) < zTo)
- {
- d[numPoints++] = 0.;
- }
- double lambda = AMath.lambda(eta[i]);
- double x0 = x[0][i];
- double y0 = y[0][i];
- double z0 = z[0][i];
- x[1][i] = (float) x0;
- y[1][i] = (float) y0;
- z[1][i] = (float) z0;
- double u = Math.cos(lambda) * Math.cos(phiDir[i]);
- double v = Math.cos(lambda) * Math.sin(phiDir[i]);
- double w = Math.sin(lambda);
- //intersections with cylinder walls
- if(w != 0.)
- {
- d[numPoints++] = (zTo - z0) / w;
- d[numPoints++] = ( -zTo - z0) / w;
- }
- double a = u * u + v * v;
- double c = x0 * x0 + y0 * y0 - rhoTo * rhoTo;
- double b = 2 * (u * x0 + v * y0);
- double squared = b * b - 4 * a * c;
- if(squared >= 0.)
- {
- d[numPoints++] = ( -b + Math.sqrt(squared)) / (2 * a);
- d[numPoints++] = ( -b - Math.sqrt(squared)) / (2 * a);
- }
- //bubble sort points by increasing path length
- for(int j = 0; j < numPoints - 1; ++j)
- for(int k = j + 1; k < numPoints; ++k)
- if(d[k] < d[j])
- {
- double temp = d[k];
- d[k] = d[j];
- d[j] = temp;
- }
- for(int j = 0; j < numPoints; ++j)
- if(d[j] >= 0. && j < numPoints - 1)
- {
- x[0][i] = (float) (x0 + d[j] * u);
- y[0][i] = (float) (y0 + d[j] * v);
- z[0][i] = (float) (z0 + d[j] * w);
- x[1][i] = (float) (x0 + d[j + 1] * u);
- y[1][i] = (float) (y0 + d[j + 1] * v);
- z[1][i] = (float) (z0 + d[j + 1] * w);
- break;
- }
- }
- }
-
-
- protected void finalizeConstruction()
- {
- super.finalizeConstruction();
- // needs ZVTx
- innerTrack = new AHelix[numData];
- for(int i = 0; i < numData; ++i)
- {
- double p = AMath.getPFromPttL(pT[i],
- AMath.tanLambda(AParameterUtilities.eta(z[0][i],
- rho[0][i])));
- // correct for average energy loss
- double pTCorrected = pT[i] * (p + 3.7) / p;
- innerTrack[i] = new AHelix((float) 0.,
- (float) (parameterStore.get("Event", "ZVtx").getD()), (
- float) (Math.toDegrees(phi[0][i])),
- (float) AMath.tanLambda(AParameterUtilities.eta(z[0][i],
- rho[0][i])), (float) pTCorrected);
- // calculatePhiCorrection(i);
- }
- }
-
-
- protected void applyCuts()
- {
- cutIndex();
- cut("CutsInDet", "STrType", " STr Type", particleType);
- cut("CutsInDet", "STr", " STr id", id);
- cut("CutsInDet", "Pt", " |Pt|", pT);
- cut("CutsInDet", "SVx", " Vertex", originVertex);
- cutPhi(phi[1]);
- float[] phiStart = new float[numData];
- for(int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
- int iMax = 0;
- if(rho[1][list] > rho[0][list])
- iMax = 1;
- int iMin = 1 - iMax;
- phiStart[list] = (float) phi[iMin][list];
- }
- cutPhi(phiStart);
- cutEta(rho[1], z[1]);
- }
-
-
- protected int internalColor()
- {
- int colorFunction = parameterStore.get(PARAMETER_GROUP, "ColorFunction").getI();
- if(colorFunction == 0)
- colorByConstant();
- else if(colorFunction == 1)
- colorByIndex(index);
- else if(colorFunction == 2)
- colorBy("ParticleColors", particleType);
- return 2;
- }
-
-
- public String getHitInfo(int index)
- {
- StringBuffer msg = new StringBuffer(getNameScreenName());
- msg.append(" (id: " + id[index] + " index: " + index + ")");
- msg.append("\n Type = ");
- msg.append(APDGTable.getName(code[index]));
- if (innerTrack != null)
- msg.append(innerTrack[index].toString());
- msg.append("\n pT (muon spectrometer) = ");
- msg.append(String.format("%.3f",pT[index]));
- msg.append(" GeV");
-
- return msg.toString();
- }
-
-
- protected void cutStartRadius()
- {
- int num = 0;
- for(int i = 0; i < numDraw; i++)
- if(Math.min(Math.abs(z[0][listdl[i]] / rho[0][listdl[i]]),
- Math.abs(z[1][listdl[i]] / rho[1][listdl[i]]))
- < 12.3 / 9.2)
- listdl[num++] = listdl[i];
- numDraw = num;
- }
-
-
- protected void cutStartRadius2()
- {
- int num = 0;
- for(int i = 0; i < numDraw; i++)
- if(Math.max(Math.abs(z[0][listdl[i]] / rho[0][listdl[i]]),
- Math.abs(z[1][listdl[i]] / rho[1][listdl[i]]))
- > 12.3 / 9.2)
- listdl[num++] = listdl[i];
- numDraw = num;
- }
-
-
- protected ACoord getYXUser()
- {
- makeDrawList();
- cutStartRadius();
- double[][][] hv = new double[2][2][numDraw];
- int[] index = new int[numDraw];
- for(int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
- for(int j = 0; j < 2; j++)
- {
- hv[0][j][i] = x[j][list];
- hv[1][j][i] = y[j][list];
- }
- index[i] = list;
- }
- return new ACoord(hv, index, this, ACoord.LINES);
- }
-
-
- protected ACoord getRZUser()
- {
- makeDrawList();
- double phiMid = Math.toRadians(parameterStore.get("RZ", "Phi").getD());
- int numSplit = 0;
- for(int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
- double phiDiff = Math.abs(phi[0][list] - phiMid);
- double sign0 = -1.;
- if(phiDiff < Math.PI / 2. || phiDiff > 3 * Math.PI / 2.)
- sign0 = +1.;
- phiDiff = Math.abs(phi[1][list] - phiMid);
- double sign1 = -1.;
- if(phiDiff < Math.PI / 2. || phiDiff > 3 * Math.PI / 2.)
- sign1 = +1.;
- if(sign0 != sign1) numSplit++;
- }
- int numPoints = 100;
- double[][][] hv = new double[2][numDraw + numSplit][];
- int[] index = new int[numDraw + numSplit];
- int num = 0;
- for(int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
- double phiDiff = Math.abs(phi[0][list] - phiMid);
- double sign0 = -1.;
- if(phiDiff < Math.PI / 2. || phiDiff > 3 * Math.PI / 2.)
- sign0 = +1.;
- phiDiff = Math.abs(phi[1][list] - phiMid);
- double sign1 = -1.;
- if(phiDiff < Math.PI / 2. || phiDiff > 3 * Math.PI / 2.)
- sign1 = +1.;
- if(sign0 == sign1)
- {
- hv[0][num] = AMath.splitLineIntoPieces(new double[]
- {z[1][list], z[0][list]}, numPoints);
- double[] xx = AMath.splitLineIntoPieces(new double[]
- {x[1][list], x[0][list]}, numPoints);
- double[] yy = AMath.splitLineIntoPieces(new double[]
- {y[1][list], y[0][list]}, numPoints);
- hv[1][num] = new double[xx.length];
- for(int j = 0; j < xx.length; ++j)
- hv[1][num][j] = sign0 *
- Math.sqrt(xx[j] * xx[j] + yy[j] * yy[j]);
- index[num++] = list;
- }
- else
- {
- //just for now....
- double a = Math.cos(phiMid);
- double b = Math.sin(phiMid);
- double x0 = x[0][list];
- double y0 = y[0][list];
- double z0 = z[0][list];
- double dx = x[1][list] - x0;
- double dy = y[1][list] - y0;
- double dz = z[1][list] - z0;
- double mag = Math.sqrt(dx * dx + dy * dy + dz * dz);
- dx /= mag;
- dy /= mag;
- dz /= mag;
- double d = -(a * x0 + b * y0) / (a * dx + b * dy);
- double xMid = x0 + d * dx;
- double yMid = y0 + d * dy;
- double zMid = z0 + d * dz;
- hv[0][num] = AMath.splitLineIntoPieces(new double[]
- {zMid, z[0][list]}, numPoints);
- double[] xx = AMath.splitLineIntoPieces(new double[]
- {xMid, x[0][list]}, numPoints);
- double[] yy = AMath.splitLineIntoPieces(new double[]
- {yMid, y[0][list]}, numPoints);
- hv[1][num] = new double[xx.length];
- for(int j = 0; j < xx.length; ++j)
- hv[1][num][j] = sign0 *
- Math.sqrt(xx[j] * xx[j] + yy[j] * yy[j]);
- index[num++] = list;
- hv[0][num] = AMath.splitLineIntoPieces(new double[]
- {z[1][list], zMid}, numPoints);
- xx = AMath.splitLineIntoPieces(new double[]
- {x[1][list], xMid}, numPoints);
- yy = AMath.splitLineIntoPieces(new double[]
- {y[1][list], yMid}, numPoints);
- hv[1][num] = new double[xx.length];
- for(int j = 0; j < xx.length; ++j)
- hv[1][num][j] = sign1 *
- Math.sqrt(xx[j] * xx[j] + yy[j] * yy[j]);
- index[num++] = list;
- }
- }
- return new ACoord(hv, index, this, ACoord.SMOOTH_POLYLINES);
- }
-
-
- protected ACoord getFRUser()
- {
- makeDrawList();
- cutStartRadius();
- double[][][] hv = new double[2][2][numDraw];
- int[] index = new int[numDraw];
- for(int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
- int iMax = 0;
- if(rho[1][list] > rho[0][list])
- iMax = 1;
- int iMin = 1 - iMax;
- double rho1 = rho[iMin][list];
- double rho2 = rho[iMax][list];
- if(rho1 > START_RADIUS)
- {
- hv[0][0][i] = rho1;
- hv[1][0][i] = Math.toDegrees(phi[iMin][list]);
- }
- else
- {
- double[] rpz = calculateRhoPhiZAtStart(list);
- hv[0][0][i] = rpz[0];
- hv[1][0][i] = Math.toDegrees(rpz[1]);
- }
- hv[0][1][i] = rho2;
- hv[1][1][i] = Math.toDegrees(phi[iMax][list]);
- index[i] = list;
- }
- return new ACoord(hv, index, this,
- ACoord.LINES).includePhiWrapAround("FR");
- }
-
-
- protected ACoord getXZUser()
- {
- makeDrawList();
- double[][][] hv = new double[2][2][numDraw];
- int[] index = new int[numDraw];
- double phi0 = Math.toRadians(AProjectionXZ.getPhi());
- double cosPhi0 = Math.cos(phi0);
- double sinPhi0 = Math.sin(phi0);
- for(int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
- for(int j = 0; j < 2; j++)
- {
- hv[0][j][i] = z[j][list];
- hv[1][j][i] = x[j][list] * cosPhi0 + y[j][list] * sinPhi0;
- }
- index[i] = list;
- }
- return new ACoord(hv, index, this, ACoord.LINES);
- }
-
-
- protected ACoord getYZUser()
- {
- makeDrawList();
- double[][][] hv = new double[2][2][numDraw];
- int[] index = new int[numDraw];
- double phi0 = Math.toRadians(AProjectionXZ.getPhi());
- double cosPhi0 = Math.cos(phi0);
- double sinPhi0 = Math.sin(phi0);
- for(int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
- for(int j = 0; j < 2; j++)
- {
- hv[0][j][i] = z[j][list];
- hv[1][j][i] = y[j][list] * cosPhi0 - x[j][list] * sinPhi0;
- }
- index[i] = list;
- }
- return new ACoord(hv, index, this, ACoord.LINES);
- }
-
-
- protected ACoord getFZUser()
- {
- makeDrawList();
- cutStartRadius2();
- double[][][] hv = new double[2][2][numDraw];
- int[] index = new int[numDraw];
- for(int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
- int iMax = 0;
- if(rho[1][list] > rho[0][list])
- iMax = 1;
- int iMin = 1 - iMax;
- double rho1 = rho[iMin][list];
- if(rho1 > START_RADIUS)
- {
- hv[0][0][i] = z[iMin][list];
- hv[1][0][i] = Math.toDegrees(phi[iMin][list]);
- }
- else
- {
- double[] rpz = calculateRhoPhiZAtStart(list);
- hv[0][0][i] = rpz[2];
- hv[1][0][i] = Math.toDegrees(rpz[1]);
- }
- hv[0][1][i] = z[iMax][list];
- hv[1][1][i] = Math.toDegrees(phi[iMax][list]);
- index[i] = list;
- }
- return new ACoord(hv, index, this,
- ACoord.LINES).includePhiWrapAround("FZ");
- }
-
-
- public void draw(AWindow window, AGraphics ag, AProjection2D projection)
- {
- if(projection instanceof AProjectionVP)
- {
- ag.draw(window.calculateDisplay(getVPUser(window, projection)));
- }
- else
- super.draw(window, ag, projection);
- }
-
-
- // a track has two arms in the VPlot
-
- protected ACoord getVPUser(AWindow window, AProjection projection)
- {
- makeDrawList();
-
- // make a copy of the points to draw: both arms * ???
- double[][][] hv = new double[2][2 * numDraw][];
- int[] index = new int[2 * numDraw];
- int num = 0;
-
- //loop over drawn objects?
- for(int j = 0; j < numDraw; ++j)
- {
- // get list item from draw index list?
- int list = listdl[j];
- // get the helix that should be drawn
- ADHelix dhelix = new ADHelix(innerTrack[list]);
- // get the helix start and end
- double s1 = dhelix.getAStart();
- double s2 = 179.;
- // hardwire projection.getMinRho() == 2. for now
- s1 = dhelix.intersectWithRadialCylinder(((AProjection2D) projection).
- getMinRho(), s1, s2);
- double sEnd = dhelix.intersectWithCylinder(true,
- AProjectionVP.getRhoVPlot(), true,
- AProjectionVP.getZVPlot());
- s2 = Math.max(Math.min(s2, sEnd), s1);
- // if the whole helix is to be drawn (which are unusual
- // helices, shorten it a little to avoid wraparound problems
- if(s1 == 0. && s2 == 180.) s2 = 179.;
- if(parameterStore.get("VP", "ShortV").getStatus() &&
- !parameterStore.get("Data", "S3D").getStatus())
- s1 = s2 - parameterStore.get("VP", "ShortV").getD() * (s2 - s1);
- if(s2 > s1)
- {
- int signMin = -1;
- int signMax = 1;
- for(int sign = signMin; sign <= signMax; sign += 2)
- {
- // ugly must change structure at some point
- AProjectionVP.sign = sign;
- ACoord pointsOnHelix = dhelix.drawHelix(window,
- (AProjection2D) projection, s1, s2);
- hv[0][num] = pointsOnHelix.hv[0][0];
- hv[1][num] = pointsOnHelix.hv[1][0];
- index[num] = list;
- num++;
- }
- }
- }
- return window.calculateUser(new ACoord(hv, index, this,
- ACoord.SMOOTH_POLYLINES)).
- includePhiWrapAround(projection.getName());
- }
-
-
- private double[] calculateRhoPhiZAtStart(int index)
- {
- double[] rpz = new double[3];
- double rho1 = rho[0][index];
- double phi1 = phi[0][index];
- double z1 = z[0][index];
- double rho2 = rho[1][index];
- double phi2 = phi[1][index];
- double z2 = z[1][index];
- double x1 = rho1 * Math.cos(phi1);
- double y1 = rho1 * Math.sin(phi1);
- double x2 = rho2 * Math.cos(phi2);
- double y2 = rho2 * Math.sin(phi2);
- double fract = (START_RADIUS - rho1) / (rho2 - rho1);
- double x = x1 + fract * (x2 - x1);
- double y = y1 + fract * (y2 - y1);
- double z = z1 + fract * (z2 - z1);
- double phi = Math.atan2(y, x);
- if(phi < 0.) phi += 2 * Math.PI;
- rpz[0] = START_RADIUS;
- rpz[1] = phi;
- rpz[2] = z;
- return rpz;
- }
-
-
- public String getVPHitInfo()
- {
- makeDrawList();
- if (numDraw == 0)
- return "";
- double sumP = 0.;
- double sumPt = 0.;
- for(int i = 0; i < numDraw; ++i)
- {
- sumPt += Math.abs(pT[listdl[i]]);
- double invLambda = (rho[1][listdl[i]] - rho[0][listdl[i]]) /
- (z[1][listdl[i]] - z[0][listdl[i]]);
- sumP += Math.abs(pT[listdl[i]] / Math.cos(Math.atan(1. / invLambda)));
- }
-
- String msg = numDraw + " " + getNameScreenName();
- msg += " sum(PT) = " + String.format("%.1f",sumPt) + " sum(P) = " + String.format("%.1f",sumP);
-
- return msg;
- }
-
-
- public A4Vector get4Vector(int num, int[] list)
- {
- A4Vector sum = new A4Vector();
- for(int i = 0; i < num; ++i)
- {
- int k = list[i];
- A3Vector start = A3Vector.fromRhoPhiZ(rho[0][k], phi[0][k],
- z[0][k]);
- A3Vector stop = A3Vector.fromRhoPhiZ(rho[1][k], phi[1][k],
- z[1][k]);
- A3Vector v = (stop.subtract(start)).normalize();
- double p = pT[k] / Math.sqrt(1. - v.z * v.z);
- sum.add(new A4Vector(v.scale(p), 0.));
- }
- return sum;
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/data/ASNPData.java b/graphics/AtlantisJava/src/atlantis/data/ASNPData.java
deleted file mode 100644
index 4c660247995..00000000000
--- a/graphics/AtlantisJava/src/atlantis/data/ASNPData.java
+++ /dev/null
@@ -1,659 +0,0 @@
-package atlantis.data;
-
-import atlantis.event.*;
-import atlantis.graphics.ACoord;
-import atlantis.parameters.AParameterUtilities;
-import atlantis.projection.AProjectionXZ;
-import atlantis.utils.A3Vector;
-import atlantis.utils.A4Vector;
-import atlantis.utils.AHashMap;
-import atlantis.utils.ALogger;
-import atlantis.utils.AMath;
-
-/**
- * Simulated Neutral Particle
- */
-
-public class ASNPData extends AData
-{
- private static ALogger logger = ALogger.getLogger(ASNPData.class);
-
- private static final double START_RADIUS = 2.;
-
- protected int[] code;
- protected int[] particleType;
- protected int[] originVertex;
- protected float[] pT;
- protected float[][] rho;
- protected float[][] phi;
- protected float[][] z;
- protected float[][] x;
- protected float[][] y;
- protected int[] type;
- private float[] temp;
- private int[] index;
-
- public float[] getPt()
- {
- return pT;
- }
-
- public String getParameterGroup()
- {
- return "SNP";
- }
-
- public String getName()
- {
- return "SNP";
- }
-
- public String getNameScreenName()
- {
- return "SimNeutralTrack";
- }
-
- ASNPData(AHashMap p, AEvent e)
- {
- super(p,e);
- rho = new float[2][];
- phi = new float[2][];
- z = new float[2][];
- x = new float[2][numData];
- y = new float[2][numData];
- rho[0] = p.getFloatArray("rhoVertex");
- phi[0] = p.getFloatArray("phiVertex");
- z[0] = p.getFloatArray("zVertex");
-
- pT = p.getFloatArray("pt");
- code = p.getIntArray("code");
- type = new int[numData];
- particleType = new int[numData];
- originVertex = p.getIntArray("simulatedVertex");
- temp = new float[numData];
- for (int i = 0; i < numData; i++)
- {
- if (Math.abs(code[i]) > 10)
- {
- // code is being used to store particle code
- particleType[i] = APDGTable.getParticleType(code[i]);
- }
- }
- calculateReasonableEndpoints(p.getFloatArray("phi"), p.getFloatArray("eta"));
-
- double[] phiD = new double[numData];
- float[] phiF = p.getFloatArray("phi");
-
- for (int i = 0; i < numData; i++)
- phiD[i] = phiF[i];
- index = indexBy(phiD);
- calculateXY(rho[0], phi[0], x[0], y[0]);
- calculateXY(rho[1], phi[1], x[1], y[1]);
- }
-
- protected void calculateRhoPhi()
- {
- calculateRhoPhi(x[0], y[0], rho[0], phi[0]);
- calculateRhoPhi(x[1], y[1], rho[1], phi[1]);
- }
-
- public static AHashMap createSNP(AHashMap p)
- {
- float[] pt = p.getFloatArray("pt");
- float[] phi = p.getFloatArray("phi");
- float[] eta = p.getFloatArray("eta");
- float[] rhoVertex = p.getFloatArray("rhoVertex");
- float[] phiVertex = p.getFloatArray("phiVertex");
- float[] zVertex = p.getFloatArray("zVertex");
- int[] id = p.getIntArray("id");
-
- int[] code = p.getIntArray("code");
-
- int numNeutral = 0;
-
- for (int i = 0; i < code.length; ++i)
- {
- int charge = code[i];
-
- try
- {
- if (Math.abs(code[i]) >= 10)
-
- // code is being used to store particle code
- charge = APDGTable.getCharge(code[i]);
- if (charge == 0)
- numNeutral++;
- }
- catch (APDGTable.ParticleNotFoundError pnf){
- logger.debug(pnf.getMessage());
- }
- }
-
- int[] simulatedVertex = ASVxData.assignVertexNumbers(phiVertex, rhoVertex, zVertex);
-
- int[] idN = new int[numNeutral];
- float[] rhoVertexN = new float[numNeutral];
- float[] phiVertexN = new float[numNeutral];
- float[] zVertexN = new float[numNeutral];
- float[] ptN = new float[numNeutral];
- float[] phiN = new float[numNeutral];
- float[] etaN = new float[numNeutral];
- int[] codeN = new int[numNeutral];
- int[] simulatedVertexN = new int[numNeutral];
-
- numNeutral = 0;
- for (int i = 0; i < code.length; ++i)
- {
- double charge = code[i];
-
- try
- {
- if (Math.abs(code[i]) >= 10)
- {
- // code is being used to store particle code
- charge = APDGTable.getCharge(code[i]);
- }
- if (charge == 0)
- {
- idN[numNeutral] = id[i];
- rhoVertexN[numNeutral] = (float) Math.sqrt(rhoVertex[i]*rhoVertex[i]-zVertex[i]*zVertex[i]);
- phiVertexN[numNeutral] = phiVertex[i];
- zVertexN[numNeutral] = zVertex[i];
- ptN[numNeutral] = pt[i];
- phiN[numNeutral] = phi[i];
- etaN[numNeutral] = eta[i];
- codeN[numNeutral] = code[i];
- simulatedVertexN[numNeutral] = simulatedVertex[i];
- numNeutral++;
- }
- }
- catch (APDGTable.ParticleNotFoundError pnf){
- logger.debug(pnf.getMessage());
- }
- }
-
- AHashMap newP = new AHashMap(10);
-
- newP.put("numData", new Integer(numNeutral));
- newP.put("id", idN);
- newP.put("rhoVertex", rhoVertexN);
- newP.put("phiVertex", phiVertexN);
- newP.put("zVertex", zVertexN);
- newP.put("pt", ptN);
- newP.put("phi", phiN);
- newP.put("eta", etaN);
- newP.put("code", codeN);
- newP.put("simulatedVertex", simulatedVertexN);
- return newP;
- }
-
- private void calculateReasonableEndpoints(float[] dirPhi, float[] dirEta)
- {
- double rhoTo = parameterStore.get("RTr", "RadiusTr").getD();
- double zTo = parameterStore.get("RTr", "ZTr").getD();
-
- rho[1] = (float[]) rho[0].clone();
- phi[1] = (float[]) phi[0].clone();
- z[1] = (float[]) z[0].clone();
- for (int i = 0; i < numData; i++)
- {
- if (particleType[i] == 5)
- {
- // photon -> ecal entrance
- rhoTo = 150.;
- zTo = 370.;
- }
- else
- {
- // neutral hadron -> hcal entrance
- rhoTo = 228.;
- zTo = 426.2;
- }
- if (rho[0][i] > rhoTo || Math.abs(z[0][i]) > zTo)
- continue;
- double rho2 = rhoTo;
- double tanLambda = AMath.tanLambda(dirEta[i]);
- double zz = z[0][i] + (rho2 - rho[0][i]) * tanLambda;
-
- if (zz > zTo)
- rho2 = (zTo - z[0][i]) / tanLambda + rho[0][i];
- if (zz < -zTo)
- rho2 = (-zTo - z[0][i]) / tanLambda + rho[0][i];
- double x = rho[0][i] * Math.cos(phi[0][i]);
- double y = rho[0][i] * Math.sin(phi[0][i]);
- // y=mx+c, x*x+y*y=rho2*rho2
- double m = Math.tan(dirPhi[i]);
- double c = y - m * x;
- // ax^2+bx+cc=0
- double a = m * m + 1.;
- double b = 2. * m * c;
- double cc = c * c - rho2 * rho2;
- double d = Math.sqrt(b * b - 4 * a * cc);
- double x1 = (-b + d) / (a * 2);
- double x2 = (-b - d) / (a * 2);
- double y1 = m * x1 + c;
- double y2 = m * x2 + c;
- double xx = x1;
- double yy = y1;
-
- if ((x2 - x) * Math.cos(dirPhi[i]) + (y2 - y) * Math.sin(dirPhi[i]) > 0.)
- {
- xx = x2;
- yy = y2;
- }
- zz = z[0][i] + (rho2 - rho[0][i]) * tanLambda;
- rho[1][i] = (float) Math.sqrt(xx * xx + yy * yy);
- phi[1][i] = (float) Math.atan2(yy, xx);
- if (phi[1][i] < 0.)
- phi[1][i] += 2 * Math.PI;
- z[1][i] = (float) zz;
- }
- }
-
- protected void applyCuts()
- {
- cutIndex();
- cut("CutsInDet", "STrType", " STr Type", particleType);
- cut("CutsInDet", "STr", " STr id", id);
- cut("CutsInDet", "Pt", " |Pt|", pT);
- cut("CutsInDet", "SVx", " Vertex", originVertex);
- cut("CutsInDet", "d0", " |d0|", getD0());
- cut("CutsInDet", "d0Loose", " |d0Loose|", getD0());
- cut("CutsInDet", "z0-zVtx", " |z0-zVtx|", getZ0Primary());
- cut("CutsInDet", "z0", " |z0|", getZ0());
- cutPhi(phi[1]);
- float[] phiStart = new float[numData];
-
- for (int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
- int iMax = 0;
-
- if (rho[1][list] > rho[0][list])
- iMax = 1;
- int iMin = 1 - iMax;
-
- if (rho[iMin][list] > START_RADIUS)
- phiStart[list] = phi[iMin][list];
- else
- {
- double[] rpz = calculateRhoPhiZAtStart(list);
-
- phiStart[list] = (float) rpz[1];
- }
- }
- cutPhi(phiStart);
- cutEta(rho[1], z[1]);
- }
-
- protected int internalColor()
- {
- int colorFunction = parameterStore.get(PARAMETER_GROUP, "ColorFunction").getI();
-
- if (colorFunction == 0)
- colorByConstant();
- else if (colorFunction == 1)
- colorByIndex(index);
- else if (colorFunction == 2)
- colorBy(getPt());
- else if (colorFunction == 3)
- colorBy("ParticleColors", particleType);
- else if (colorFunction == 4)
- colorBy(originVertex);
- return 3;
- }
-
- public String getHitInfo(int index)
- {
- StringBuffer msg = new StringBuffer(getNameScreenName());
- msg.append(" (id: " + id[index] + " index: " + index + ")");
- msg.append("\n Type = ");
- msg.append(APDGTable.getName(code[index]));
- msg.append("\n PT = ");
- msg.append(String.format("%.3f",pT[index]));
- msg.append(" GeV");
-
- return msg.toString();
- }
-
- protected void cutStartRadius()
- {
- int num = 0;
-
- for (int i = 0; i < numDraw; i++)
- if (Math.max(rho[0][listdl[i]], rho[1][listdl[i]]) > START_RADIUS)
- listdl[num++] = listdl[i];
- numDraw = num;
- }
-
- protected ACoord getYXUser()
- {
- makeDrawList();
- double[][][] hv = new double[2][2][numDraw];
- int[] index = new int[numDraw];
-
- for (int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
-
- for (int j = 0; j < 2; j++)
- {
- hv[0][j][i] = x[j][list];
- hv[1][j][i] = y[j][list];
- }
- index[i] = list;
- }
- return new ACoord(hv, index, this, ACoord.LINES);
- }
-
- protected ACoord getRZUser()
- {
- makeDrawList();
- double[][][] hv = new double[2][2][numDraw];
- int[] index = new int[numDraw];
- double phiMid = Math.toRadians(parameterStore.get("RZ", "Phi").getD());
-
- for (int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
- double phiDiff = Math.abs(phi[1][list] - phiMid);
- double sign;
-
- // this is not quite correct need to split some tracks
- if (phiDiff < Math.PI / 2. || phiDiff > 3 * Math.PI / 2.)
- sign = +1.;
- else
- sign = -1.;
- for (int j = 0; j < 2; j++)
- {
- hv[0][j][i] = z[j][list];
- hv[1][j][i] = sign * rho[j][list];
- }
- index[i] = list;
- }
- return new ACoord(hv, index, this, ACoord.LINES);
- }
-
- protected ACoord getFRUser()
- {
- makeDrawList();
- cutStartRadius();
- double[][][] hv = new double[2][2][numDraw];
- int[] index = new int[numDraw];
-
- for (int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
- int iMax = 0;
-
- if (rho[1][list] > rho[0][list])
- iMax = 1;
- int iMin = 1 - iMax;
- double rho1 = rho[iMin][list];
- double rho2 = rho[iMax][list];
-
- if (rho1 > START_RADIUS)
- {
- hv[0][0][i] = rho1;
- hv[1][0][i] = Math.toDegrees(phi[iMin][list]);
- }
- else
- {
- double[] rpz = calculateRhoPhiZAtStart(list);
-
- hv[0][0][i] = rpz[0];
- hv[1][0][i] = Math.toDegrees(rpz[1]);
- }
- hv[0][1][i] = rho2;
- hv[1][1][i] = Math.toDegrees(phi[iMax][list]);
- index[i] = list;
- }
- return new ACoord(hv, index, this, ACoord.LINES).includePhiWrapAround("FR");
- }
-
- protected ACoord getXZUser()
- {
- makeDrawList();
- double[][][] hv = new double[2][2][numDraw];
- int[] index = new int[numDraw];
- double phi0 = Math.toRadians(AProjectionXZ.getPhi());
- double cosPhi0 = Math.cos(phi0);
- double sinPhi0 = Math.sin(phi0);
-
- for (int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
-
- for (int j = 0; j < 2; j++)
- {
- hv[0][j][i] = z[j][list];
- hv[1][j][i] = x[j][list] * cosPhi0 + y[j][list] * sinPhi0;
- }
- index[i] = list;
- }
- return new ACoord(hv, index, this, ACoord.LINES);
- }
-
- protected ACoord getYZUser()
- {
- makeDrawList();
- double[][][] hv = new double[2][2][numDraw];
- int[] index = new int[numDraw];
- double phi0 = Math.toRadians(AProjectionXZ.getPhi());
- double cosPhi0 = Math.cos(phi0);
- double sinPhi0 = Math.sin(phi0);
-
- for (int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
-
- for (int j = 0; j < 2; j++)
- {
- hv[0][j][i] = z[j][list];
- hv[1][j][i] = y[j][list] * cosPhi0 - x[j][list] * sinPhi0;
- }
- index[i] = list;
- }
- return new ACoord(hv, index, this, ACoord.LINES);
- }
-
- protected ACoord getFZUser()
- {
- makeDrawList();
- cutStartRadius();
- double[][][] hv = new double[2][2][numDraw];
- int[] index = new int[numDraw];
-
- for (int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
- int iMax = 0;
-
- if (rho[1][list] > rho[0][list])
- iMax = 1;
- int iMin = 1 - iMax;
- double rho1 = rho[iMin][list];
-
- if (rho1 > START_RADIUS)
- {
- hv[0][0][i] = z[iMin][list];
- hv[1][0][i] = Math.toDegrees(phi[iMin][list]);
- }
- else
- {
- double[] rpz = calculateRhoPhiZAtStart(list);
-
- hv[0][0][i] = rpz[2];
- hv[1][0][i] = Math.toDegrees(rpz[1]);
- }
- hv[0][1][i] = z[iMax][list];
- hv[1][1][i] = Math.toDegrees(phi[iMax][list]);
- index[i] = list;
- }
- return new ACoord(hv, index, this, ACoord.LINES).includePhiWrapAround("FZ");
- }
-
- protected ACoord getVPUser()
- {
- makeDrawList();
- double[] h = new double[numDraw];
- double[] v = new double[numDraw];
- int[] index = new int[numDraw];
-
- for (int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
-
- h[i] = AParameterUtilities.eta(z[1][list], rho[1][list]);
- v[i] = Math.toDegrees(phi[1][list]);
- index[i] = list;
- }
- return new ACoord(h, v, index, this).includePhiWrapAround("VP");
- }
-
- private double[] calculateRhoPhiZAtStart(int index)
- {
- double[] rpz = new double[3];
- double rho1 = rho[0][index];
- double phi1 = phi[0][index];
- double z1 = z[0][index];
- double rho2 = rho[1][index];
- double phi2 = phi[1][index];
- double z2 = z[1][index];
- double x1 = rho1 * Math.cos(phi1);
- double y1 = rho1 * Math.sin(phi1);
- double x2 = rho2 * Math.cos(phi2);
- double y2 = rho2 * Math.sin(phi2);
- double fract = (START_RADIUS - rho1) / (rho2 - rho1);
- double x = x1 + fract * (x2 - x1);
- double y = y1 + fract * (y2 - y1);
- double z = z1 + fract * (z2 - z1);
- double phi = Math.atan2(y, x);
-
- if (phi < 0.)
- phi += 2 * Math.PI;
- rpz[0] = START_RADIUS;
- rpz[1] = phi;
- rpz[2] = z;
- return rpz;
- }
-
- public String getVPHitInfo()
- {
- makeDrawList();
- if (numDraw == 0)
- return "";
- double sumP = 0.;
- double sumPt = 0.;
-
- for (int i = 0; i < numDraw; ++i)
- {
- sumPt += Math.abs(pT[listdl[i]]);
- double invLambda = (rho[1][listdl[i]] - rho[0][listdl[i]]) / (z[1][listdl[i]] - z[0][listdl[i]]);
- sumP += Math.abs(pT[listdl[i]] / Math.cos(Math.atan(1. / invLambda)));
- }
-
- String msg = numDraw + " " + getNameScreenName();
- msg += " sum(PT) = " + String.format("%.1f",sumPt) + " sum(P) = " + String.format("%.1f",sumP);
-
- return msg;
- }
-
- public A4Vector get4Vector(int num, int[] list)
- {
- A4Vector sum = new A4Vector();
- for (int i = 0; i < num; ++i)
- {
- int k = list[i];
- A3Vector start = A3Vector.fromRhoPhiZ(rho[0][k], phi[0][k], z[0][k]);
- A3Vector stop = A3Vector.fromRhoPhiZ(rho[1][k], phi[1][k], z[1][k]);
- A3Vector v = (stop.subtract(start)).normalize();
- double p = pT[k] / Math.sqrt(1. - v.z * v.z);
- sum.add(new A4Vector(v.scale(p), 0.));
- }
-
- return sum;
- }
-
- private float[] getZ0()
- {
- for (int i = 0; i < numDraw; ++i)
- {
- int list = listdl[i];
- double[] poca = getPoca(list);
- temp[list] = (float) poca[2];
- }
- return temp;
- }
-
- private float[] getZ0Primary()
- {
- double[] primary = event.getPrimaryVertex();
- double c = primary[2];
- for (int i = 0; i < numDraw; ++i)
- {
- int list = listdl[i];
- double[] poca = getPoca(list);
- temp[list] = (float) (poca[2] - c);
- }
- return temp;
- }
-
- private float[] getD0()
- {
- double[] primary = event.getPrimaryVertex();
- double a = primary[0];
- double b = primary[1];
- for (int i = 0; i < numDraw; ++i)
- {
- int list = listdl[i];
- double[] poca = getPoca(list);
- temp[list] = (float) Math.hypot(a-poca[0], b-poca[1]);
- }
- return temp;
- }
-
- private double[] getPoca(int i)
- {
- double[] primary = event.getPrimaryVertex();
- double a = primary[0];
- double b = primary[1];
- double xMin;
- double yMin;
- double zMin;
- double dx = x[1][i] - x[0][i];
- if (dx == 0.)
- {
- xMin = x[0][i];
- yMin = b;
- }
- else
- {
- double m = (y[1][i] - y[0][i]) / dx;
- double c = y[0][i] - m * x[0][i];
- xMin = (a + (b - c) * m) / (m * m + 1);
- yMin = m * xMin + c;
- }
- double dz = z[1][i] - z[0][i];
- if (dz == 0.)
- {
- zMin = z[0][i];
- }
- else
- {
- double mx = (x[1][i] - x[0][i]) / dz;
- if (mx != 0.)
- zMin = z[0][i] + (xMin - x[0][i]) / mx;
- else
- {
- double my = (y[1][i] - y[0][i]) / dz;
- if (my != 0.)
- zMin = z[0][i] + (yMin - y[0][i]) / my;
- else
- zMin = z[0][i];
- }
- }
- return new double[] { xMin, yMin, zMin };
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/data/ASTrData.java b/graphics/AtlantisJava/src/atlantis/data/ASTrData.java
deleted file mode 100644
index aa8f6caa5d7..00000000000
--- a/graphics/AtlantisJava/src/atlantis/data/ASTrData.java
+++ /dev/null
@@ -1,254 +0,0 @@
-package atlantis.data;
-
-import atlantis.event.*;
-import atlantis.utils.AHashMap;
-import atlantis.utils.AAtlantisException;
-import atlantis.utils.ALogger;
-
-public class ASTrData extends ATrackData
-{
- private static ALogger logger = ALogger.getLogger(ASTrData.class);
-
- public static final int UNDERLYING_EVENT = 0;
- public static final int NORMAL = 1;
-
- protected int[] code;
- protected int[] type;
- protected int[] particleType;
- protected int[] originVertex;
-
- public String getParameterGroup()
- {
- return "STr";
- }
-
- public String getName()
- {
- return "STr";
- }
-
- public String getNameScreenName()
- {
- return "SimChargedTrack";
- }
-
- ASTrData(AHashMap p, AEvent e) throws AAtlantisException
- {
- super(p,e);
- code = p.getIntArray("code");
- originVertex = p.getIntArray("originVertex");
- type = p.getIntArray("type");
- particleType = new int[numData];
- for(int i = 0; i < numData; i++)
- particleType[i] = APDGTable.getParticleType(code[i]);
- }
-
-
- public static AHashMap createSTr(AHashMap p)
- {
- float[] pt = p.getFloatArray("pt");
- float[] phi = p.getFloatArray("phi");
- float[] eta = p.getFloatArray("eta");
- float[] rhoVertex = p.getFloatArray("rhoVertex");
- float[] phiVertex = p.getFloatArray("phiVertex");
- float[] zVertex = p.getFloatArray("zVertex");
- int[] id = p.getIntArray("id");
- int[] code = p.getIntArray("code");
- //rhoEndVertex not available in older xml files - check that it exists first.
- float[] rhoEndVertex = (p.get("rhoEndVertex") != null) ? p.getFloatArray("rhoEndVertex") : null;
- //float[] phiEndVertex = (p.get("phiEndVertex") != null) ? p.getFloatArray("phiEndVertex") : null;
- float[] zEndVertex = (p.get("zEndVertex") != null) ? p.getFloatArray("zEndVertex") : null;
-
- int numCharged = 0;
- for(int i = 0; i < code.length; ++i)
- {
- int charge = code[i];
-
- try
- {
- if(Math.abs(code[i]) >= 10 || Math.abs(code[i]) == 1)
- // code is being used to store particle code
- charge = APDGTable.getCharge(code[i]);
- if(charge == 1 || charge == -1)
- numCharged++;
- }
- catch(APDGTable.ParticleNotFoundError pnf){
- logger.debug(pnf.getMessage());
- }
- }
-
- //Assign the vertices to the particle tracks
- int[] simulatedVertex = ASVxData.assignVertexNumbers(phiVertex, rhoVertex, zVertex);
-
- //Now build subsets of the charged tracks only
- int[] idC = new int[numCharged];
- int[] typeC = new int[numCharged];
- float[] rhoVertexC = new float[numCharged];
- float[] rhoEndVertexC = new float[numCharged];
- float[] phiVertexC = new float[numCharged];
- float[] zVertexC = new float[numCharged];
- float[] ptC = new float[numCharged];
- float[] phiC = new float[numCharged];
- float[] etaC = new float[numCharged];
- int[] chargeC = new int[numCharged];
- int[] codeC = new int[numCharged];
- int[] simulatedVertexC = new int[numCharged];
-
- numCharged = 0;
- for(int i = 0; i < code.length; ++i)
- {
- int charge = code[i];
- try
- {
- if(Math.abs(code[i]) >= 10 || Math.abs(code[i]) == 1)
- // code is being used to store particle code
- charge = APDGTable.getCharge(code[i]);
- if(charge == 1 || charge == -1)
- {
- if(id[i] > 0)
- {
- idC[numCharged] = id[i];
- typeC[numCharged] = NORMAL;
- }
- else
- {
- // negative id is used to flag tracks belong to a second
- // track bank which correspond to the underlyingEvent
- // set id to zero as it is not a kine number
- idC[numCharged] = 0;
- typeC[numCharged] = UNDERLYING_EVENT;
- }
- //copy all the information
- rhoVertexC[numCharged] = (float)(Math.sqrt(rhoVertex[i]*rhoVertex[i]-zVertex[i]*zVertex[i]));
- //if there is no end vertex, fill with 0.0 as in XML file
- rhoEndVertexC[numCharged] = (rhoEndVertex != null) ? (float)(Math.sqrt(rhoEndVertex[i]*rhoEndVertex[i]-zEndVertex[i]*zEndVertex[i])) : 0 ;
- phiVertexC[numCharged] = phiVertex[i];
- zVertexC[numCharged] = zVertex[i];
- ptC[numCharged] = pt[i];
- //if (pt[i]>5) System.out.println(zVertex[i]);
- phiC[numCharged] = phi[i];
- etaC[numCharged] = eta[i];
- codeC[numCharged] = code[i];
- chargeC[numCharged] = charge;
- simulatedVertexC[numCharged] = simulatedVertex[i];
- numCharged++;
- }
- }
- catch(APDGTable.ParticleNotFoundError pnf)
- {
- logger.debug(pnf.getMessage());
- }
- }
-
- //Build a new hash map with the information for the
- //charged tracks only
- AHashMap newP = new AHashMap(12);
- newP.put("numData", new Integer(numCharged));
- newP.put("id", idC);
- newP.put("type", typeC);
- newP.put("rhoVertex", rhoVertexC);
- newP.put("rhoEndVertex", rhoEndVertexC);
- newP.put("phiVertex", phiVertexC);
- newP.put("zVertex", zVertexC);
- newP.put("pt", ptC);
- newP.put("phi", phiC);
- newP.put("eta", etaC);
- newP.put("code", codeC);
- newP.put("charge", chargeC);
- newP.put("originVertex", simulatedVertexC);
- //return the new hasp map
- return newP;
- }
-
-
- /**
- * Get the vertex for which sum|Pt| is maximum
- * @return the index of that vertex
- */
- public int getMaxSumPtVertex()
- {
- /***
- * Triple loop can be avoided, e.g using hashmap,
- * to tired to fix all this - S.B.
- */
-
- //get the highest vertex number
- int maxVertex = 0;
-
- //by looping over all tracks and looking at the vertex number
- for(int i = 0; i < numData; i++)
- if(type[i] == NORMAL)
- if(originVertex[i] > maxVertex)
- maxVertex = originVertex[i];
-
- //Now make an array to hold the sumPT for all vertices
- double[] sumPt = new double[maxVertex + 1];
-
- //Now loop again to add up all the pT
- for(int i = 0; i < numData; i++)
- if(type[i] == NORMAL && Math.abs(h[i].d0()) < 2.0)
- sumPt[originVertex[i]] += Math.abs(h[i].pT());
-
- //Yippee - lets loop once more to find the highest pT one
- int VtxIndex = 0;
- for(int i = 0; i < sumPt.length; i++)
- if(sumPt[i] > sumPt[VtxIndex])
- VtxIndex = i;
-
- return VtxIndex;
- }
-
-
-
- protected void applyCuts()
- {
- super.applyCuts();
-
- // STr are always drawn as helices, check for tracks with rhoVertex
- // beyond the diameter of InDet and don't draw those
- super.cutRhoVertexAfterInDetRadius();
-
- cut("CutsInDet", "STr", " STr id", id);
- cut("CutsInDet", "STrCode", " STr code", code);
- cut("CutsInDet", "STrType", " STr Type", particleType);
- cut("CutsInDet", "SVx", " Vertex", originVertex);
- }
-
- protected int internalColor()
- {
- int colorFunction = parameterStore.get(PARAMETER_GROUP, "ColorFunction").getI();
-
- switch (colorFunction)
- {
- case 0:
- colorByConstant();
- break;
- case 1:
- colorByIndex(index);
- break;
- case 2:
- colorBy(getPt());
- break;
- case 3:
- colorBy("ParticleColors", particleType);
- break;
- case 4:
- colorBy(originVertex);
- break;
- }
-
- return 4;
- }
-
- public String getHitInfo(int index)
- {
- StringBuffer msg = new StringBuffer(getNameScreenName());
- msg.append(" (barcode/id: " + id[index] + " index: " + index + ")");
- msg.append("\n Type = "+APDGTable.getName(code[index]));
- msg.append(" (type code "); msg.append(code[index]);
- msg.append(")"); msg.append(h[index].toString());
-
- return msg.toString();
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/data/ASVxData.java b/graphics/AtlantisJava/src/atlantis/data/ASVxData.java
deleted file mode 100644
index 87481919d2a..00000000000
--- a/graphics/AtlantisJava/src/atlantis/data/ASVxData.java
+++ /dev/null
@@ -1,167 +0,0 @@
-package atlantis.data;
-
-
-import atlantis.event.*;
-import atlantis.globals.AGlobals;
-import atlantis.utils.*;
-import java.util.*;
-
-
-/**
- * Simulated vertices
- */
-public class ASVxData extends A3DPointData {
-
- // protected final String PARAMETER_GROUP = getParameterGroup();
-
-
- public String getParameterGroup()
- {
- return "SVx";
- }
-
-
- public String getName()
- {
- return "SVx";
- }
-
-
- public String getNameScreenName()
- {
- return "SimVertex";
-
- }
-
-
- public String getHitInfo(int index)
- {
- int simpleOutput = AGlobals.instance().getSimpleOutput();
- if(simpleOutput>0) return getNameScreenName()+" index: " + index+"\n"+
- AMath.RHO+" = "+String.format("%.3f",rho[index])+"\n "+
- "z = "+String.format("%.3f",z[index])+" cm\n"+
- AMath.PHI+" = "+String.format("%.3f",Math.toDegrees(phi[index]))+AMath.DEGREES;
-
- return getNameScreenName() + " (id: " + id[index] + " index: " + index + ")" +
- "\n x = " + String.format("%.5f",x[index]) + " cm" +
- "\n y = " + String.format("%.5f",y[index]) + " cm" +
- "\n z = " + String.format("%.5f",z[index]) + " cm" +
- "\n " + AMath.RHO + " = " + String.format("%.5f",rho[index]) + " cm" +
- "\n " + AMath.PHI + " = " +
- String.format("%.5f",Math.toDegrees(phi[index])) + AMath.DEGREES +
- " (" + String.format("%.5f",phi[index]) + " rad)";
-
- } // getHitInfo() --------------------------------------------------------
-
-
-
- ASVxData(AHashMap p, AEvent e) {
- super(p,e);
- }
-
- // SVx do not come correctly in input xml file
- // must create them from STr data in xml file
- public static AHashMap createSVx(AHashMap p) {
- float[] rhoVertex=p.getFloatArray("rhoVertex");
- float[] phiVertex=p.getFloatArray("phiVertex");
- float[] zVertex=p.getFloatArray("zVertex");
- int[] sv=ASVxData.assignVertexNumbers(phiVertex, rhoVertex, zVertex);
- int numVertex=0;
-
- for(int i=0; i<sv.length; i++)
- if(sv[i]>=numVertex) numVertex=sv[i]+1;
-
- float[] rho=new float[numVertex];
- float[] phi=new float[numVertex];
- float[] z=new float[numVertex];
-
- for(int i=0; i<sv.length; i++) {
- rho[sv[i]]=(float)(Math.sqrt(rhoVertex[i]*rhoVertex[i]-zVertex[i]*zVertex[i]));
- phi[sv[i]]=phiVertex[i];
- z[sv[i]]=zVertex[i];
- }
-
- AHashMap newP=new AHashMap(4);
-
- newP.put("numData", new Integer(numVertex));
- newP.put("rho", rho);
- newP.put("phi", phi);
- newP.put("z", z);
- return newP;
- }
-
- public static int[] assignVertexNumbers(float[] phi, float[] rho, float[] z) {
- int[] sv=new int[phi.length];
- Vertex[] key=new Vertex[phi.length];
-
- HashMap vertices=new HashMap();
-
-// this is ugly, related to the fact that id[i]=i+1 by default;
- int num=1;
- for(int i=0; i<sv.length; i++) {
- key[i]=new Vertex(rho[i], phi[i], z[i]);
- Object value=vertices.get(key[i]);
- if(value==null) {
- sv[i]=num;
- vertices.put(key[i], new Integer(num++));
- } else {
- sv[i]=((Integer)value).intValue();
- }
- }
- return sv;
- }
-
- protected int internalColor() {
- colorByConstant();
- return 1;
- }
-
- protected void applyCuts() {
- cutIndex();
- cutPhi(phi);
- cutEta(rho, z);
- cut("CutsInDet", "SVx", " Vertex", id);
- }
-
-
- public double[] getVertex(int index) {
-
- double[] vertex=new double[3];
-
- if(index>-1&&index<numData) {
- vertex[0]=x[index];
- vertex[1]=y[index];
- vertex[2]=z[index];
- }
- return vertex;
- }
-
-}
-
-
-class Vertex {
- float x;
- float y;
- float z;
- int hashcode;
-
- Vertex(float x, float y, float z) {
- this.x=x;
- this.y=y;
- this.z=z;
- hashcode=Float.floatToIntBits(z);
- }
-
- @Override
- public int hashCode() {
- return hashcode;
- }
-
- @Override
- public boolean equals(Object a) {
- if(!(a instanceof Vertex)) return false;
- Vertex b=(Vertex)a;
- return x==b.x&&y==b.y&&z==b.z;
- }
-}
-
diff --git a/graphics/AtlantisJava/src/atlantis/data/ASegmentData.java b/graphics/AtlantisJava/src/atlantis/data/ASegmentData.java
deleted file mode 100755
index d999effdb0b..00000000000
--- a/graphics/AtlantisJava/src/atlantis/data/ASegmentData.java
+++ /dev/null
@@ -1,164 +0,0 @@
-package atlantis.data;
-
-import atlantis.event.*;
-import atlantis.globals.AGlobals;
-import atlantis.graphics.ACoord;
-import atlantis.parameters.AParameterUtilities;
-import atlantis.projection.AProjectionXZ;
-import atlantis.utils.AHashMap;
-import atlantis.utils.AMath;
-
-/**
- * Generic track segment class.
- *
- * @author Eric Jansen
- */
-public abstract class ASegmentData extends AData {
-
- protected float[] x;
- protected float[] y;
- protected float[] z;
- protected float[] theta;
- protected float[] phi;
- protected int[] hits;
- protected int[] numHits;
-
- ASegmentData(AHashMap p, AEvent e) {
- super(p,e);
-
- x = p.getFloatArray("x");
- y = p.getFloatArray("y");
- z = p.getFloatArray("z");
- phi = p.getFloatArray("phi");
- theta = p.getFloatArray("theta");
- numHits = p.getIntArray("numHits");
-
- hits = p.getIntArray("hits");
- }
-
- protected int internalColor() {
- int colorFunction = parameterStore.get(PARAMETER_GROUP, "ColorFunction").getI();
-
- switch(colorFunction) {
- case 0:
- colorByConstant();
- break;
- case 1:
- colorByIndex();
- break;
- }
-
- return 1;
- }
-
-
- protected void applyCuts()
- {
- cutIndex();
-
- }
-
-
- public String getHitInfo(int index) {
- int simpleOutput = AGlobals.instance().getSimpleOutput();
- if(simpleOutput>0) return getNameScreenName()+" index: " + index+"\n"+
- AMath.PHI+" = "+String.format("%.3f",Math.toDegrees(phi[index]))+AMath.DEGREES;
-
-
- return getName() + " (index: " + index + ")\n"
- + " storegate key = " + storeGateKey + "\n"
- + " " + AMath.PHI + " = " + String.format("%.3f",Math.toDegrees(phi[index]))
- + " (" + String.format("%.3f",phi[index]) + " rad)" + "\n"
- + " tL = " + String.format("%.3f",Math.toDegrees(1./Math.tan(theta[index]))) + "\n"
- + " x = " + String.format("%.3f",x[index]) + " cm\n"
- + " y = " + String.format("%.3f",y[index]) + " cm\n"
- + " z = " + String.format("%.3f",z[index]) + " cm\n"
- + " hits = " + numHits[index] + "\n";
- }
-
- protected ACoord getYXUser() {
- makeDrawList();
-
- double[][][] hv = new double[2][numDraw][];
- int[] index = new int[numDraw];
- double length = parameterStore.get(PARAMETER_GROUP, "SegmentLength").getD();
-
- for (int i=0; i<numDraw; i++) {
- int j = listdl[i];
-
- double dx = length * Math.sin(theta[j]) * Math.cos(phi[j]);
- double dy = length * Math.sin(theta[j]) * Math.sin(phi[j]);
-
- hv[0][i] = new double [] {x[j]-dx, x[j]-dx/2., x[j], x[j]+dx/2., x[j]+dx};
- hv[1][i] = new double [] {y[j]-dy, y[j]-dy/2., y[j], y[j]+dy/2., y[j]+dy};
-
- index[i] = j;
- }
-
- return new ACoord(hv, index, this, ACoord.SMOOTH_POLYLINES);
- }
-
- protected ACoord getFRUser() {
- return getYXUser().convertYXToFR().includePhiWrapAround("FR");
- }
-
- protected ACoord getRZUser() {
- makeDrawList();
-
- double[][][] hv = new double[2][numDraw][];
- int[] index = new int[numDraw];
- double length = parameterStore.get(PARAMETER_GROUP, "SegmentLength").getD();
-
- for (int i=0; i<numDraw; i++) {
- int j = listdl[i];
-
- double dx = length * Math.sin(theta[j]) * Math.cos(phi[j]);
- double dy = length * Math.sin(theta[j]) * Math.sin(phi[j]);
- double dz = length * Math.cos(theta[j]);
-
- int sign = AParameterUtilities.getRhoSign(x[j], y[j]);
-
- hv[0][i] = new double [] {z[j]-dz, z[j]+dz};
- hv[1][i] = new double [] {
- sign * Math.hypot(x[i]-dx, y[i]-dy),
- sign * Math.hypot(x[i]+dx, y[i]+dy)
- };
-
- index[i] = j;
- }
-
- return new ACoord(hv, index, this, ACoord.POLYLINES);
- }
-
- protected ACoord getXZUser() {
- makeDrawList();
-
- double[][][] hv = new double[2][numDraw][];
- int[] index = new int[numDraw];
- double length = parameterStore.get(PARAMETER_GROUP, "SegmentLength").getD();
- double phi0 = Math.toRadians(AProjectionXZ.getPhi());
-
- for (int i=0; i<numDraw; i++) {
- int j = listdl[i];
-
- double dx = length * Math.sin(theta[j]) * Math.cos(phi[j]);
- double dy = length * Math.sin(theta[j]) * Math.sin(phi[j]);
- double dz = length * Math.cos(theta[j]);
-
- double s = x[j] * Math.cos(phi0) + y[j] * Math.sin(phi0);
- double ds = dx * Math.cos(phi0) + dy * Math.sin(phi0);
-
- if (z[j] < 0) {
- hv[0][i] = new double [] {z[j]+dz, z[j]-dz};
- hv[1][i] = new double [] {s-ds, s+ds};
- } else {
- hv[0][i] = new double [] {z[j]-dz, z[j]+dz};
- hv[1][i] = new double [] {s-ds, s+ds};
- }
-
- index[i] = j;
- }
-
- return new ACoord(hv, index, this, ACoord.POLYLINES);
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/data/ASiClusterData.java b/graphics/AtlantisJava/src/atlantis/data/ASiClusterData.java
deleted file mode 100644
index 83cc0f98026..00000000000
--- a/graphics/AtlantisJava/src/atlantis/data/ASiClusterData.java
+++ /dev/null
@@ -1,385 +0,0 @@
-package atlantis.data;
-
-import atlantis.event.*;
-import atlantis.globals.AGlobals;
-import atlantis.graphics.ACoord;
-import atlantis.parameters.AParameter;
-import atlantis.parameters.AParameterUtilities;
-import atlantis.projection.AProjectionVP;
-import atlantis.utils.AHashMap;
-import atlantis.utils.AMath;
-
-/**
- * SiCluster - Silicon clusters, reads in STC datatype from event file
- */
-public class ASiClusterData extends AHitData
-{
- // read in from event file
- private float[][] x;
- private float[][] y;
- private float[][] z;
- private float[] width;
- private int[] etaModule;
- private int[] phiModule;
- private int[] side;
-
- // calculated
- private float[][] rho;
- private float[][] phi;
- private int[] layer;
-
- public static final int U_CLUSTER = -1;
- public static final int PHI_CLUSTER = 0;
- public static final int V_CLUSTER = 1;
- public static final int ENDCAP_MINUS = 0;
- public static final int BARREL = 1;
- public static final int ENDCAP_PLUS = 2;
-
-
- public String getParameterGroup()
- {
- return "SiCluster";
- }
-
- public String getName()
- {
- return "SiCluster";
- }
-
- public String getNameScreenName()
- {
- return "SCT_Cluster";
- }
-
- public float[][] getX()
- {
- return x;
- }
-
- public float[][] getY()
- {
- return y;
- }
-
- public float[][] getZ()
- {
- return z;
- }
-
-
-
- ASiClusterData(AHashMap p, AEvent e)
- {
- super(p,e);
- x = new float[][] { p.getFloatArray("x0"), p.getFloatArray("x1") };
- y = new float[][] { p.getFloatArray("y0"), p.getFloatArray("y1") };
- z = new float[][] { p.getFloatArray("z0"), p.getFloatArray("z1") };
- width = p.getFloatArray("width");
-
- rho = new float[2][numData];
- phi = new float[2][numData];
-
- layer = new int[numData];
- for (int i = 0; i < numData; ++i)
- {
- sub[i] = getSub(id[i]);
- layer[i] = getLayer(id[i]);
- }
-
- etaModule = (p.get("etaModule") != null) ? p.getIntArray("etaModule") : null;
- phiModule = (p.get("phiModule") != null) ? p.getIntArray("phiModule") : null;
- side = (p.get("side") != null) ? p.getIntArray("side") : null;
-
- } // ASiClusterData() ---------------------------------------------------
-
-
-
- protected void calculateRhoPhi()
- {
-
- calculateRhoPhi(x[0], y[0], rho[0], phi[0]);
- calculateRhoPhi(x[1], y[1], rho[1], phi[1]);
- // treat wraparound
- for (int i = 0; i < numData; ++i)
- {
- if (Math.abs(phi[1][i] - phi[0][i]) > Math.PI)
- {
- if (phi[1][i] - phi[0][i] > 0)
- {
- phi[0][i] += AMath.TWO_PI;
- }
- else
- {
- phi[1][i] += AMath.TWO_PI;
- }
- }
- } // for
- } // calculateRhoPhi() --------------------------------------------------
-
- private void cutSubdetector()
- {
- AParameter par = parameterStore.get("CutsInDet", "SCT");
- if (par.getI() != -1)
- {
- cutArray(sub, par.getI(), "Barrel/Endcap");
- }
- } // cutSubdetector() ---------------------------------------------------
-
-
- protected void applyCuts()
- {
- cutIndex();
- cutOrientation();
- cutSubdetector();
- cut("CutsInDet", "Layer", "Layer", layer);
- cutSimulatedTracks();
- cutReconstructedTracks();
- cutPhi(phi[0]);
- cutEta();
- } // applyCuts() --------------------------------------------------------
-
- private void cutEta()
- {
- AParameter par = parameterStore.get("CutsATLAS", "CutEta");
- if (!par.getStatus())
- return;
- double etaCut = par.getD();
- double etaMid = parameterStore.get("CutsATLAS", "EtaMiddle").getD();
- double etaLowerCut = etaMid - etaCut;
- double etaUpperCut = etaMid + etaCut;
- int num = 0;
- for (int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
- double eta1 = AParameterUtilities.eta(z[0][list], rho[0][list]);
- double eta2 = AParameterUtilities.eta(z[1][list], rho[1][list]);
- double etaLower = Math.min(eta1, eta2);
- double etaUpper = Math.max(eta1, eta2);
- if (etaUpper > etaLowerCut && etaLower < etaUpperCut)
- listdl[num++] = list;
- }
- numDraw = num;
- } // cutEta() -----------------------------------------------------------
-
- public int getLayer(int id)
- {
- int layer = (id & 0x01e00000) >> 21;
- int sub = getSub(id);
- if (sub == BARREL)
- {
- layer += 3;
- }
- else
- {
- layer += 11;
- }
- return layer;
- } // getLayer() ---------------------------------------------------------
-
- public int getSub(int id)
- {
- return (id & 0x06000000) >> 25;
- } // getSub() -----------------------------------------------------------
-
- public int getOrientation(int id)
- {
- int side = (id & 0x400) >> 10;
- int sub = getSub(id);
- if ((side == 1 && sub == BARREL) || (side == 0 && sub != BARREL))
- {
- return PHI_CLUSTER;
- }
-
- int layer = getLayer(id);
- if (layer % 2 == 1)
- {
- return U_CLUSTER;
- }
-
- return V_CLUSTER;
- } // getOrientation() ---------------------------------------------------
-
- protected void cutOrientation()
- {
- int num = 0;
- AParameter stereoAnglePar = parameterStore.get("SiCluster", "Stereo");
- if (!stereoAnglePar.getStatus())
- {
- return;
- }
- int orientation = stereoAnglePar.getI();
- for (int i = 0; i < numDraw; i++)
- {
- // only works for barrel for now !!!!
- // if( getSub(id[listdl[i]])==BARREL &&
- // orientation==getOrientation(id[listdl[i]]))
- if (orientation == getOrientation(id[listdl[i]]))
- {
- listdl[num++] = listdl[i];
- }
- }
- numDraw = num;
- } // cutOrientation() ---------------------------------------------------
-
- protected int internalColor()
- {
- int numColorTypes = super.internalColor();
- int colorFunction = parameterStore.get(PARAMETER_GROUP, "ColorFunction").getI();
- if (colorFunction == numColorTypes + 1)
- {
- colorBy(layer);
- }
- else if (colorFunction == numColorTypes + 2)
- {
- colorByOrientation();
- }
-
- return numColorTypes + 2;
- } // internalColor() ----------------------------------------------------
-
- protected void colorByOrientation()
- {
- int numColors = parameterStore.get("HitColors", "Number").getI();
- numColors = Math.min(7, numColors);
- int[] col = parameterStore.getArray("HitColors", "C1", numColors);
- for (int i = 0; i < numData; i++)
- {
- color[i] = (byte) col[getOrientation(id[i]) + 1 % numColors];
- }
- } // colorByOrientation() -----------------------------------------------
-
- public String getHitInfo(int index)
- {
- int simpleOutput = AGlobals.instance().getSimpleOutput();
- if(simpleOutput>0) return getNameScreenName()+" index: " + index;
-
- String temp = getNameScreenName() + " (id: " + id[index] + " index: " + index +")\n" +
- " orientation = " + getOrientation(id[index]);
- temp += "\n x = " + x[0][index] + " " + x[1][index];
- temp += "\n y = " + y[0][index] + " " + y[1][index];
- temp += "\n z = " + z[0][index] + " " + z[1][index];
- temp += "\n " + AMath.RHO + " = " + rho[0][index] + " " + rho[1][index];
- temp += "\n " + AMath.ETA + " module = ";
- temp += (etaModule != null) ? Integer.toString(etaModule[index]) : "n/a";
- temp += "\n " + AMath.PHI + " module = ";
- temp += (phiModule != null) ? Integer.toString(phiModule[index]) : "n/a";
- temp += "\n side = ";
- temp += (side != null) ? Integer.toString(side[index]) : "n/a";
- temp += "\n width = ";
- temp += (width != null) ? Float.toString(width[index]) : "n/a";
-
- temp += super.getHitInfo(index); // finds barcode information
-
- return temp;
- } // getHitInfo() -------------------------------------------------------
-
- protected ACoord getYXUser()
- {
- makeDrawList();
- double[][][] hv = new double[2][2][numDraw];
- int[] index = new int[numDraw];
- for (int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
- for (int j = 0; j < 2; j++)
- {
- hv[0][j][i] = x[j][list];
- hv[1][j][i] = y[j][list];
- }
- index[i] = list;
- }
- return new ACoord(hv, index, this, ACoord.LINES);
- } // getYXUser() --------------------------------------------------------
-
- protected ACoord getRZUser()
- {
- makeDrawList();
- double[][][] hv = new double[2][2][numDraw];
- int[] index = new int[numDraw];
- double phiMid = Math.toRadians(parameterStore.get("RZ", "Phi").getD());
- for (int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
- double phiDiff = Math.abs(phi[1][list] - phiMid);
- double sign;
- if (phiDiff < Math.PI / 2. || phiDiff > 3 * Math.PI / 2.)
- {
- sign = +1.;
- }
- else
- {
- sign = -1.;
- }
-
- for (int j = 0; j < 2; j++)
- {
- hv[0][j][i] = z[j][list];
- hv[1][j][i] = sign * rho[j][list];
- }
- index[i] = list;
- }
- return new ACoord(hv, index, this, ACoord.LINES);
- } // getRZUser() --------------------------------------------------------
-
- protected ACoord getFRUser()
- {
- makeDrawList();
- double[][][] hv = new double[2][2][numDraw];
- int[] index = new int[numDraw];
- for (int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
- for (int j = 0; j < 2; j++)
- {
- hv[0][j][i] = rho[j][list];
- hv[1][j][i] = Math.toDegrees(AParameterUtilities.getPhiStereo(rho[j][list], phi[j][list], z[j][list]));
- }
- index[i] = list;
- }
- return new ACoord(hv, index, this, ACoord.LINES).includePhiWrapAround("FR");
- } // getFRUser() --------------------------------------------------------
-
- protected ACoord getFZUser()
- {
- makeDrawList();
- double[][][] hv = new double[2][2][numDraw];
- int[] index = new int[numDraw];
- for (int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
- for (int j = 0; j < 2; j++)
- {
- hv[0][j][i] = z[j][list];
- hv[1][j][i] = Math.toDegrees(AParameterUtilities.getPhiStereo(rho[j][list], phi[j][list], z[j][list]));
- }
- index[i] = list;
- }
- return new ACoord(hv, index, this, ACoord.LINES).includePhiWrapAround("FZ");
- } // getFZUser() --------------------------------------------------------
-
- protected ACoord getVPUser()
- {
- makeDrawList();
- int numTotal = 2 * numDraw;
- double[][][] hv = new double[2][numTotal][2];
- int[] index = new int[numTotal];
- double[] sign = new double[] { -1., 1. };
- for (int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
- for (int k = 0; k < 2; k++)
- {
- double deltaEta = AProjectionVP.getDeltaEta(rho[k][list], z[k][list]);
- double eta = AParameterUtilities.eta(z[k][list], rho[k][list]);
- for (int j = 0; j < 2; j++)
- {
- hv[0][2 * i + j][k] = eta + sign[j] * deltaEta;
- hv[1][2 * i + j][k] = Math.toDegrees(phi[k][list]);
- index[2 * i + j] = list;
- }
- }
- }
- return new ACoord(hv, index, this, ACoord.POLYLINES).includePhiWrapAround("VP");
- } // getVPUser() --------------------------------------------------------
-
-} // class ASiClusterData ===================================================
diff --git a/graphics/AtlantisJava/src/atlantis/data/ASiClusterRDOData.java b/graphics/AtlantisJava/src/atlantis/data/ASiClusterRDOData.java
deleted file mode 100644
index ac1806b4cb1..00000000000
--- a/graphics/AtlantisJava/src/atlantis/data/ASiClusterRDOData.java
+++ /dev/null
@@ -1,481 +0,0 @@
-package atlantis.data;
-
-import atlantis.event.*;
-import atlantis.globals.AGlobals;
-import atlantis.graphics.ACoord;
-import atlantis.parameters.AParameter;
-import atlantis.parameters.AParameterUtilities;
-import atlantis.projection.AProjectionVP;
-import atlantis.utils.AHashMap;
-import atlantis.utils.AMath;
-
-
-/**
- * Silicon clusters RDO Raw Data Objects (class derived from ASiClusterData)
- * Parameters expected in the event file for SCTRDO datatype:
- * x0|x1|y0|y1|z0|z1|phiModule|etaModule|id|BCIDError|firstHitError|
- * formatterError|lvl1Error|preambleError|secondHitError|syncError|timeBin
- *
- */
-public class ASiClusterRDOData extends AHitData
-{
- private float[][] x = null;
- private float[][] y = null;
- private float[][] z = null;
- private int[] etaModule = null;
- private int[] phiModule = null;
- private int[] BCIDError = null;
- private int[] firstHitError = null;
- private int[] formatterError = null;
- private int[] lvl1Error = null;
- private int[] preambleError = null;
- private int[] secondHitError = null;
- private int[] syncError = null;
- private int[] timeBin = null;
- // calculated here
- private int[] layer;
- private float[][] rho;
- private float[][] phi;
-
- public static final int U_CLUSTER = -1;
- public static final int PHI_CLUSTER = 0;
- public static final int V_CLUSTER = 1;
- public static final int ENDCAP_MINUS = 0;
- public static final int BARREL = 1;
- public static final int ENDCAP_PLUS = 2;
-
-
-
- public String getParameterGroup()
- {
- return "SiClusterRDO";
-
- } // getParameterGroup() ------------------------------------------------
-
-
-
- public String getName()
- {
- return "SiClusterRDO";
-
- } // getName() ----------------------------------------------------------
-
-
-
- public String getNameScreenName()
- {
- return "SiClusterRDO";
-
- } // getNameScreenName() ------------------------------------------------
-
-
-
- ASiClusterRDOData(AHashMap p, AEvent e)
- {
- super(p,e);
- x = new float[][]
- { p.getFloatArray("x0"), p.getFloatArray("x1") };
- y = new float[][]
- { p.getFloatArray("y0"), p.getFloatArray("y1") };
- z = new float[][]
- { p.getFloatArray("z0"), p.getFloatArray("z1") };
- etaModule = p.getIntArray("etaModule");
- phiModule = p.getIntArray("phiModule");
- BCIDError = p.getIntArray("BCIDError");
- firstHitError = p.getIntArray("firstHitError");
- formatterError = p.getIntArray("formatterError");
- lvl1Error = p.getIntArray("lvl1Error");
- preambleError = p.getIntArray("preambleError");
- secondHitError = p.getIntArray("secondHitError");
- syncError = p.getIntArray("syncError");
- timeBin = p.getIntArray("timeBin");
- rho = new float[2][numData];
- phi = new float[2][numData];
- layer = new int[numData];
-
- for(int i = 0; i < numData; ++i)
- {
- sub[i] = getSub(id[i]);
- layer[i] = getLayer(id[i]);
- }
-
- } // ASiClusterRDOData() ------------------------------------------------
-
-
- protected void calculateRhoPhi()
- {
- calculateRhoPhi(x[0], y[0], rho[0], phi[0]);
- calculateRhoPhi(x[1], y[1], rho[1], phi[1]);
- // treat wraparound
- for(int i = 0; i < numData; ++i)
- {
- if(Math.abs(phi[1][i] - phi[0][i]) > Math.PI)
- {
- if(phi[1][i] - phi[0][i] > 0)
- {
- phi[0][i] += AMath.TWO_PI;
- }
- else
- {
- phi[1][i] += AMath.TWO_PI;
- }
- }
- }
-
- } // calculateRhoPhi() --------------------------------------------------
-
-
-
- private void cutSubdetector()
- {
- AParameter par = parameterStore.get("CutsInDet", "SCT");
- if(par.getI() != -1)
- {
- cutArray(sub, par.getI(), "Barrel/Endcap");
- }
-
- } // cutSubdetector() ---------------------------------------------------
-
-
- protected void applyCuts()
- {
- cutIndex();
- cutOrientation();
- cutSubdetector();
- cut("CutsInDet", "Layer", "Layer", layer);
- cutPhi(phi[0]);
- cutEta();
-
- } // applyCuts() --------------------------------------------------------
-
-
-
- private void cutEta()
- {
- AParameter par = parameterStore.get("CutsATLAS", "CutEta");
- if(!par.getStatus())return;
- double etaCut = par.getD();
- double etaMid = parameterStore.get("CutsATLAS", "EtaMiddle").getD();
- double etaLowerCut = etaMid - etaCut;
- double etaUpperCut = etaMid + etaCut;
- int num = 0;
- for(int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
- double eta1 = AParameterUtilities.eta(z[0][list], rho[0][list]);
- double eta2 = AParameterUtilities.eta(z[1][list], rho[1][list]);
- double etaLower = Math.min(eta1, eta2);
- double etaUpper = Math.max(eta1, eta2);
- if(etaUpper > etaLowerCut && etaLower < etaUpperCut)
- listdl[num++] = list;
- }
- numDraw = num;
-
- } // cutEta() -----------------------------------------------------------
-
-
-
- public int getLayer(int id)
- {
- int layer = (id & 0x01e00000) >> 21;
- int sub = getSub(id);
- if(sub == BARREL)
- layer += 3;
- else
- layer += 11;
- return layer;
-
- } // getLayer() ---------------------------------------------------------
-
-
-
- public int getSub(int id)
- {
- return(id & 0x06000000) >> 25;
-
- } // getSub() -----------------------------------------------------------
-
-
-
- public int getOrientation(int id)
- {
- int side = (id & 0x400) >> 10;
- int sub = getSub(id);
- if((side == 1 && sub == BARREL) || (side == 0 && sub != BARREL))
- {
- return PHI_CLUSTER;
- }
- int layer = getLayer(id);
- if(layer % 2 == 1)return U_CLUSTER;
- return V_CLUSTER;
-
- } // getOrientation() ---------------------------------------------------
-
-
-
- protected void cutOrientation()
- {
- int num = 0;
- AParameter stereoAnglePar = parameterStore.get("SiCluster", "Stereo");
- if(!stereoAnglePar.getStatus())
- {
- return;
- }
- int orientation = stereoAnglePar.getI();
- for(int i = 0; i < numDraw; i++)
- // only works for barrel for now !!!!
- // if( getSub(id[listdl[i]])==BARREL && orientation==getOrientation(id[listdl[i]]))
- if(orientation == getOrientation(id[listdl[i]]))
- {
- listdl[num++] = listdl[i];
- }
- numDraw = num;
-
- } // cutOrientation() ---------------------------------------------------
-
-
-
- /**
- * parameter InDet -> SiClusterRDO -> Color Function:
- * pv="Constant = 0, Error = 1, Orientation = 2"
- */
- protected int internalColor()
- {
- // it's usual to call this method from mother class, but in this case
- // it uses it's own colour types co we don't care about AHitData
- // int numColorTypes = super.internalColor();
-
- int colorFunction = parameterStore.get(PARAMETER_GROUP, "ColorFunction").getI();
-
- if(colorFunction == 0)
- {
- colorByConstant();
- }
- else if(colorFunction == 1)
- {
- colorByError();
- }
- else if(colorFunction == 2)
- {
- colorByOrientation();
- }
-
- // 3 colour schemes exist here
- return 3;
-
- } // internalColor() ----------------------------------------------------
-
-
-
- /**
- * colour elements by error (error subtags from the event file):
- * BCIDError, firstHitError, formatterError, lvl1Error, preambleError,
- * secondHitError, syncError ]
- * if any of these flags is set to true, the element is considered erroneous
- * (next iteration may be to colour by error type, if they want it ...)
- */
- protected void colorByError()
- {
- int constantColor = parameterStore.get(PARAMETER_GROUP, "Constant").getI();
- int errorColor = parameterStore.get(PARAMETER_GROUP, "Error").getI();
-
- for(int i = 0; i < numData; i++)
- {
- if(BCIDError[i] != 0 || firstHitError[i] != 0 ||
- formatterError[i] != 0 || lvl1Error[i] != 0 ||
- preambleError[i] != 0 || secondHitError[i] != 0 ||
- syncError[i] != 0)
- {
- // element is erroneous
- color[i] = (byte) errorColor;
- }
- else
- {
- color[i] = (byte) constantColor;
- }
- }
-
- } // colorByError() -----------------------------------------------------
-
-
-
- protected void colorByOrientation()
- {
- int numColors = parameterStore.get("HitColors", "Number").getI();
- numColors = Math.min(7, numColors);
- int[] col = parameterStore.getArray("HitColors", "C1", numColors);
- for(int i = 0; i < numData; i++)
- {
- color[i] = (byte) col[getOrientation(id[i]) + 1 % numColors];
- }
-
- } // colorByOrientation() -----------------------------------------------
-
-
-
- public String getHitInfo(int index)
- {
- int simpleOutput = AGlobals.instance().getSimpleOutput();
- if(simpleOutput>0) return getNameScreenName()+" index: " + index;
-
- String temp = getNameScreenName() + " (id: " + id[index] + " index: " + index + ")\n" +
- " orientation = " + getOrientation(id[index]) + "\n" +
- " x = " + x[0][index] + " " + x[1][index] + "\n" +
- " y = " + y[0][index] + " " + y[1][index] + "\n" +
- " z = " + z[0][index] + " " + z[1][index] + "\n" +
- " " + AMath.RHO + " = " + rho[0][index] + " " +
- rho[1][index] + "\n" +
- " " + AMath.ETA + " module = " + etaModule[index] + "\n" +
- " " + AMath.PHI + " module = " + phiModule[index] + "\n" +
- " BCID error = " + BCIDError[index] + "\n" +
- " first hit error = " + firstHitError[index] + "\n" +
- " formatter error = " + formatterError[index] + "\n" +
- " lvl1 error = " + lvl1Error[index] + "\n" +
- " preamble error = " + preambleError[index] + "\n" +
- " second hit error = " + secondHitError[index] + "\n" +
- " sync error = " + syncError[index] + "\n" +
- " time bin = " + timeBin[index];
- return temp;
-
- } // getHitInfo() -------------------------------------------------------
-
-
-
- protected ACoord getYXUser()
- {
- makeDrawList();
- double[][][] hv = new double[2][2][numDraw];
- int[] index = new int[numDraw];
- for(int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
- for(int j = 0; j < 2; j++)
- {
- hv[0][j][i] = x[j][list];
- hv[1][j][i] = y[j][list];
- }
- index[i] = list;
- }
- return new ACoord(hv, index, this, ACoord.LINES);
-
- } // getYXUser() --------------------------------------------------------
-
-
-
- protected ACoord getRZUser()
- {
- makeDrawList();
- double[][][] hv = new double[2][2][numDraw];
- int[] index = new int[numDraw];
- double phiMid = Math.toRadians(parameterStore.get("RZ", "Phi").getD());
- for(int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
- double phiDiff = Math.abs(phi[1][list] - phiMid);
- double sign;
- if(phiDiff < Math.PI / 2. || phiDiff > 3 * Math.PI / 2.)
- {
- sign = +1.;
- }
- else
- {
- sign = -1.;
- }
- for(int j = 0; j < 2; j++)
- {
- hv[0][j][i] = z[j][list];
- hv[1][j][i] = sign * rho[j][list];
- }
- index[i] = list;
- }
- return new ACoord(hv, index, this, ACoord.LINES);
-
- } // getRZUser() --------------------------------------------------------
-
-
-
- protected ACoord getFRUser()
- {
- makeDrawList();
- double[][][] hv = new double[2][2][numDraw];
- int[] index = new int[numDraw];
- for(int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
- for(int j = 0; j < 2; j++)
- {
- hv[0][j][i] = rho[j][list];
- hv[1][j][i] = Math.toDegrees(AParameterUtilities.getPhiStereo(rho[j][list], phi[j][list],
- z[j][list]));
- }
- index[i] = list;
- }
- return new ACoord(hv, index, this, ACoord.LINES).includePhiWrapAround("FR");
-
- } // getFRUser() --------------------------------------------------------
-
-
-
- protected ACoord getFZUser()
- {
- makeDrawList();
- double[][][] hv = new double[2][2][numDraw];
- int[] index = new int[numDraw];
- for(int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
- for(int j = 0; j < 2; j++)
- {
- hv[0][j][i] = z[j][list];
- hv[1][j][i] = Math.toDegrees(AParameterUtilities.getPhiStereo(rho[j][list], phi[j][list],
- z[j][list]));
- }
- index[i] = list;
- }
- return new ACoord(hv, index, this, ACoord.LINES).includePhiWrapAround("FZ");
-
- } // getFZUser() --------------------------------------------------------
-
-
-
- protected ACoord getVPUser()
- {
- makeDrawList();
- int numTotal = 2 * numDraw;
- int numPoints = 10;
- double[][][] hv = new double[2][numTotal][numPoints];
- int[] index = new int[numTotal];
- double[] sign = new double[]
- { -1., 1.};
- for(int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
- double xx = x[0][list];
- double delx = (x[1][list] - x[0][list]) / (numPoints - 1);
- double yy = y[0][list];
- double dely = (y[1][list] - y[0][list]) / (numPoints - 1);
- double zz = z[0][list];
- double delz = (z[1][list] - z[0][list]) / (numPoints - 1);
- for(int k = 0; k < numPoints; k++)
- {
- double xxx = xx + k * delx;
- double yyy = yy + k * dely;
- double zzz = zz + k * delz;
- double rrr = Math.sqrt(xxx * xxx + yyy * yyy);
- double ppp = Math.atan2(yyy, xxx);
- double deltaEta = AProjectionVP.getDeltaEta(rrr, zzz);
- double eta = AParameterUtilities.eta(zzz, rrr);
- for(int j = 0; j < 2; j++)
- {
- hv[0][2 * i + j][k] = eta + sign[j] * deltaEta;
- hv[1][2 * i + j][k] = Math.toDegrees(ppp);
- index[2 * i + j] = list;
- }
- }
- }
- return new ACoord(hv, index, this, ACoord.POLYLINES). includePhiWrapAround("VP");
-
- } // getVPUser() --------------------------------------------------------
-
-
-} // class ASiClusterRDOData ================================================
diff --git a/graphics/AtlantisJava/src/atlantis/data/ATGCData.java b/graphics/AtlantisJava/src/atlantis/data/ATGCData.java
deleted file mode 100755
index e0005dce948..00000000000
--- a/graphics/AtlantisJava/src/atlantis/data/ATGCData.java
+++ /dev/null
@@ -1,340 +0,0 @@
-package atlantis.data;
-
-import atlantis.event.*;
-import atlantis.graphics.ACoord;
-import atlantis.output.ALogInterface;
-import atlantis.output.AOutput;
-import atlantis.parameters.AParameterUtilities;
-import atlantis.utils.AAtlantisException;
-import atlantis.utils.AHashMap;
-import atlantis.utils.AIdHelper;
-import atlantis.utils.ALogger;
-import atlantis.utils.AMath;
-
-public class ATGCData extends AMuonHitData
-{
- float[] swidth;
- float[] lwidth;
- float[] length;
- int[] gasGap;
-
- private static ALogger logger = ALogger.getLogger(ATGCData.class);
-
- public String getParameterGroup()
- {
- return "TGC";
- }
-
- public String getName()
- {
- return "TGC";
- }
-
- public String getNameScreenName()
- {
- return "TGC";
- }
-
- ATGCData(AHashMap p, AEvent e)
- {
- super(p,e);
- swidth = p.getFloatArray("swidth");
- length = p.getFloatArray("length");
- lwidth = p.getFloatArray("lwidth");
- gasGap = new int[numData];
- for (int i = 0; i < numData; i++)
- gasGap[i] = getGasGap(i);
- }
-
- protected int getStation(int index)
- {
- try {
- String stationName = AIdHelper.stationName(id[index]);
- return (stationName.charAt(1) - '0') % 4;
- } catch (AAtlantisException e) {
- logger.error("Problem decoding TGC identifier", e);
- }
-
- return 0;
- }
-
- protected int getSub(int index)
- {
- try {
- if (AIdHelper.stationEta(id[index]) < 0) {
- return 0;
- } else {
- return 1;
- }
-
- } catch (AAtlantisException e) {
- logger.error("Problem decoding TGC identifier", e);
- }
-
- return 0;
- }
-
- public int getSector(int index)
- {
- try {
- String stationName = AIdHelper.stationName(id[index]);
- int stationPhi = AIdHelper.stationPhi(id[index]);
-
- int retval;
- if (stationName.equals("T4E")) {
- int temp = stationPhi % 24;
- retval = 2 * (temp / 3);
- } else if (stationName.charAt(2) == 'F') {
- int temp = stationPhi % 24;
- retval = 2 * (temp / 3);
- if (temp % 3 > 1) retval += 1;
- } else {
- int temp = (stationPhi + 1) % 48;
- retval = 2 * (temp / 6);
- if (temp % 6 > 3) retval += 1;
- }
- return retval;
-
- } catch (AAtlantisException e) {
- logger.error("Problem decoding TGC identifier", e);
- }
-
- return 0;
-
- }
-
- protected int getGasGap(int index)
- {
- try {
- return AIdHelper.tgcGasGap(id[index]);
- } catch (AAtlantisException e) {
- logger.error("Problem decoding TGC identifier", e);
- }
-
- return 0;
- }
-
- protected boolean getMeasuresPhi(int index)
- {
- try {
- if (AIdHelper.tgcIsStrip(id[index]) == 1) {
- return true;
- }
- } catch (AAtlantisException e) {
- logger.error("Problem decoding TGC identifier", e);
- }
-
- return false;
- }
-
- public void applyCuts()
- {
- super.applyCuts();
- if (parameterStore.get("CutsATLAS", "CutPhi").getStatus())
- cutPhi(phi, getDPhi());
- if (parameterStore.get("CutsATLAS", "CutEta").getStatus())
- cutEtaDRho(rho, z, getDRho());
- }
-
- // used for cuts
-
- private float[] getDPhi()
- {
- // only roughly correct
- // must create all
- float[] dphi = new float[numData];
-
- // need only fill for those in draw list
- for (int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
-
- dphi[list] = (float) Math.abs(Math.atan2((swidth[list] + lwidth[list]) / 4., rho[list]));
- }
- return dphi;
- }
-
- // used for cuts
-
- private float[] getDRho()
- {
- // only roughly correct
- // must create all
- float[] drho = new float[numData];
-
- // need only fill for those in draw list
- for (int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
-
- drho[list] = (float) (length[list] / 2.);
- }
- return drho;
- }
-
- protected ACoord getFZUser()
- {
- makeDrawList();
- cutArray(measuresPhi, true, " Strip");
- double[][][] hv = new double[2][2][numDraw];
- int[] index = new int[numDraw];
-
- for (int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
-
- index[i] = list;
- double deltaPhi = ((swidth[list] + lwidth[list]) / 4.) / rho[list];
-
- hv[0][0][i] = z[list];
- hv[1][0][i] = Math.toDegrees(phi[list] - deltaPhi);
- hv[0][1][i] = z[list];
- hv[1][1][i] = Math.toDegrees(phi[list] + deltaPhi);
- }
- return new ACoord(hv, index, this, ACoord.LINES).includePhiWrapAround("FZ");
- }
-
- private void makeDrawListYX()
- {
- int mode = parameterStore.get("YX", "Mode").getI();
-
- if (mode == 0 || mode >= 5)
- {
- numDraw = 0;
- }
- else
- {
- makeDrawList();
- int num = 0;
-
- for (int i = 0; i < numDraw; ++i)
- if (mode == station[listdl[i]] + 1)
- listdl[num++] = listdl[i];
- numDraw = num;
- }
- cut("YX", "TGCGasGap", " TGC Gas Gap", gasGap);
- }
-
- protected ACoord getYXUser()
- {
- return getYXUser(0);
- }
-
- protected ACoord getYXUser(int flag)
- {
- makeDrawListYX();
- int[] split = { 6, 1, 6, 1 };
- int numPoints = 4;
- boolean splitIt = parameterStore.get("YX", "FishEye").getStatus() || flag == 1;
-
- if (splitIt)
- numPoints = 14;
- double[] temp = new double[4];
- double[][][] hv = new double[2][numDraw][numPoints];
- int[] index = new int[numDraw];
-
- for (int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
-
- index[i] = list;
- double cosPhi = Math.cos(phi[list]);
- double sinPhi = Math.sin(phi[list]);
- double rMid = rho[list];
- double dR = length[list] / 2.;
- double r = rMid - dR;
- double d = swidth[list] / 2.;
- double x = r * cosPhi;
- double y = r * sinPhi;
- double dx = d * sinPhi;
- double dy = d * cosPhi;
-
- hv[0][i][0] = x + dx;
- hv[1][i][0] = y - dy;
- hv[0][i][1] = x - dx;
- hv[1][i][1] = y + dy;
- r = rMid + dR;
- x = r * cosPhi;
- y = r * sinPhi;
- d = lwidth[list] / 2.;
- dx = d * sinPhi;
- dy = d * cosPhi;
- hv[0][i][2] = x - dx;
- hv[1][i][2] = y + dy;
- hv[0][i][3] = x + dx;
- hv[1][i][3] = y - dy;
- if (splitIt)
- for (int j = 0; j < 2; ++j)
- {
- for (int k = 0; k < 4; ++k)
- temp[k] = hv[j][i][k];
- AMath.splitArrayIntoPieces(temp, hv[j][i], split);
- }
- }
- return new ACoord(hv, index, this);
- }
-
- protected ACoord getFRUser()
- {
- return getYXUser(1).convertYXToFR().includePhiWrapAround("FR");
- }
-
- protected ACoord getXZRZUser(int sign[])
- {
- double[][][] hv = new double[2][numDraw][];
- int index[] = new int[numDraw];
-
- try {
- for (int i=0; i<numDraw; i++) {
- int j = listdl[i];
- index[i] = j;
-
- double rho = Math.sqrt(x[j]*x[j] + y[j]*y[j]);
-
- if (AIdHelper.tgcIsStrip(id[j]) == 1) {
- double drho = length[j]/2.;
- hv[0][i] = new double[] { z[j], z[j] };
- hv[1][i] = new double[] { sign[i] * (rho - drho),
- sign[i] * (rho + drho) };
- } else {
- hv[0][i] = new double[] { z[j] };
- hv[1][i] = new double[] { sign[i] * rho };
- }
- }
-
- return new ACoord(hv, index, this);
- } catch (AAtlantisException e) {
- AOutput.append("Error decoding TGC identifier: " + e.getMessage(), ALogInterface.BAD_COMMAND);
- return ACoord.NO_DATA;
- }
- }
-
- protected ACoord getXZUser() {
- makeDrawList();
- cutMuonSector(sector);
-
- int[] sign = new int[numDraw];
- int sect = (int) Math.round(parameterStore.get("XZ", "Phi").getD() / 22.5);
-
- for(int i=0; i<numDraw; i++) {
- if (sector[listdl[i]] == sect)
- sign[i] = 1;
- else
- sign[i] = -1;
- }
-
- return getXZRZUser(sign);
- }
-
- protected ACoord getRZUser() {
- makeDrawList();
-
- int[] sign = new int[numDraw];
- for (int i=0; i<numDraw; i++) {
- int j = listdl[i];
- sign[i] = AParameterUtilities.getRhoSign(x[j], y[j]);
- }
-
- return getXZRZUser(sign);
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/data/ATILEData.java b/graphics/AtlantisJava/src/atlantis/data/ATILEData.java
deleted file mode 100755
index 99bc22c7daa..00000000000
--- a/graphics/AtlantisJava/src/atlantis/data/ATILEData.java
+++ /dev/null
@@ -1,843 +0,0 @@
-package atlantis.data;
-
-import atlantis.event.*;
-import java.io.IOException;
-import java.io.InputStream;
-import java.io.StringReader;
-import java.io.FileNotFoundException;
-
-import com.Ostermiller.util.CSVParser;
-
-import atlantis.geometry.ACalorimeterDetector;
-import atlantis.globals.AGlobals;
-import atlantis.graphics.ACoord;
-import atlantis.output.ALogInterface;
-import atlantis.output.AOutput;
-import atlantis.projection.AProjection2D;
-import atlantis.projection.AProjectionFR;
-import atlantis.projection.AProjectionRZ;
-import atlantis.projection.AProjectionYX;
-import atlantis.utils.AAtlantisException;
-import atlantis.utils.AHashMap;
-import atlantis.utils.AIdHelper;
-import atlantis.utils.AMath;
-import atlantis.utils.AUtilities;
-import atlantis.utils.ALogger;
-
-
-/**
- * The TILE hadronic calorimeter.
- *
- * @author Eric Jansen
- */
-public class ATILEData extends ACalorimeterData
-{
- private static ALogger logger = ALogger.getLogger(ATILEData.class);
-
- // data for real pulse shapes plots
- private float[] pmt1Energy = null;
- private float[] pmt2Energy = null;
- private float[] pmt1Chi2 = null;
- private float[] pmt2Chi2 = null;
- private float[] pmt1Time = null;
- private float[] pmt2Time = null;
- private float[] pmt1RawTime = null;
- private float[] pmt2RawTime = null;
- private float[] pmt1RawAmplitude = null;
- private float[] pmt2RawAmplitude = null;
- private int[][] adcCounts1 = null;
- private int[][] adcCounts2 = null;
- private int[] pmt1Gain = null;
- private int[] pmt2Gain = null;
- private float[] pmt1Pedestal = null;
- private float[] pmt2Pedestal = null;
- private int[] pmt1Number = null;
- private int[] pmt2Number = null;
- private int[] pmt1ADCStatus = null;
- private int[] pmt2ADCStatus = null;
- private static boolean pulseShapesDataAvailable = false;
- private static final String LOOKUP_TABLE_FILE =
- AGlobals.instance().getHomeDirectory() + "configuration" +
- System.getProperty("file.separator") +
- "rpsplt_tile.csv";
- // number of lookup table values for real pulse shapes plots calculation
- private static final short NUMBER_OF_LOOKUP_VALUES = 401;
-
-
- ATILEData(AHashMap p, AEvent e)
- {
- super(p,e);
-
-
- for (int i = 0; i < numData; i++)
- {
- try
- {
- side[i] = (byte) AIdHelper.tileSide(id[i]);
- etaIndex[i] = (short) AIdHelper.tileTower(id[i]);
- phiIndex[i] = (short) AIdHelper.tileModule(id[i]);
- sampling[i] = AIdHelper.tileSampling(id[i]);
- }
- catch (AAtlantisException ex)
- {
- System.out.println("Problem decoding ID " + id[i] + " in " +
- CALORIMETER_NAME + ": " + ex.getMessage());
- side[i] = 0;
- etaIndex[i] = -1;
- phiIndex[i] = -1;
- sampling[i] = -1;
- }
- }
-
- makeHitToGeometryMapping();
- for (int i = 0; i < et.length; ++i)
- {
- et[i] = Math.abs(energy[i] / (float) Math.cosh(eta[i]));
- }
-
- // Collect some constants needed for the histograms.
- for (int i = 0; i < ACalorimeterDetector.count(); i++)
- {
- if (ACalorimeterDetector.get(i).getName().indexOf(CALORIMETER_NAME) >= 0)
- {
- if (innerR == 0.0 || ACalorimeterDetector.get(i).getRMin() < innerR)
- {
- innerR = ACalorimeterDetector.get(i).getRMin();
- }
- if (phiGranularity == 0.0 || ACalorimeterDetector.get(i).getDeltaPhi() < phiGranularity)
- {
- phiGranularity = ACalorimeterDetector.get(i).getDeltaPhi();
- }
- if (etaGranularity == 0.0 || ACalorimeterDetector.get(i).getDeltaEta() < etaGranularity)
- {
- etaGranularity = ACalorimeterDetector.get(i).getDeltaEta();
- }
- if (outerEta == 0.0 || ACalorimeterDetector.get(i).getEtaMax() > outerEta)
- {
- outerEta = ACalorimeterDetector.get(i).getEtaMax();
- }
- }
-
- if (outerR == 0.0 || ACalorimeterDetector.get(i).getRMax() > outerR)
- {
- outerR = ACalorimeterDetector.get(i).getRMax();
- }
- if (outerZ == 0.0 || ACalorimeterDetector.get(i).getZMax() > outerZ)
- {
- outerZ = ACalorimeterDetector.get(i).getZMax();
- }
- }
-
- // Add a little bit of extra margin to prevent binning errors due to
- // rounding of numbers.
- outerEta += etaGranularity;
-
- readPulseShapePlotData(p);
-
- pmt1ADCStatus = (p.get("pmt1ADCStatus") != null) ? p.getIntArray("pmt1ADCStatus") : null;
- pmt2ADCStatus = (p.get("pmt2ADCStatus") != null) ? p.getIntArray("pmt2ADCStatus") : null;
-
-
- } // ATILEData() --------------------------------------------------------
-
-
-
- /**
- * readLookupTableFile() reads in comma separated values (CSV) file
- * with TILE real pulse shapes plots time and amplitude lookup values
- * @throws AAtlantisException
- */
- protected static void readLookupTableFile() throws AAtlantisException
- {
- try
- {
- InputStream is = AUtilities.getFileAsStream(LOOKUP_TABLE_FILE);
- CSVParser parser = new CSVParser(is);
- parser.setCommentStart("#");
- String arrayName = null;
-
- while((arrayName = parser.nextValue()) != null)
- {
- String valueArray = parser.nextValue(); // shall now contain all values
- CSVParser parserArray = new CSVParser(new StringReader(valueArray));
- String[][] s = parserArray.getAllValues();
- if("TILE_AMPLITUDE".equals(arrayName))
- {
- ACalorimeterRPSPLT.TILE_AMPLITUDE =
- getLookupTableArray(s, NUMBER_OF_LOOKUP_VALUES);
- }
- else if("TILE_TIME".equals(arrayName))
- {
- ACalorimeterRPSPLT.TILE_TIME =
- getLookupTableArray(s, NUMBER_OF_LOOKUP_VALUES);
- }
- }
- }
- catch(FileNotFoundException e)
- {
- throw new AAtlantisException("could not find file: " +
- LOOKUP_TABLE_FILE);
- }
- catch(IOException e)
- {
- throw new AAtlantisException("exception while reading file: " +
- LOOKUP_TABLE_FILE);
- }
- catch(AAtlantisException e)
- {
- throw e;
- }
-
- } // readLookupTableFile() ----------------------------------------------
-
-
-
- private void readPulseShapePlotData(AHashMap p)
- {
- pmt1Energy = (p.get("pmt1Energy") != null) ? p.getFloatArray("pmt1Energy") : null;
- pmt2Energy = (p.get("pmt2Energy") != null) ? p.getFloatArray("pmt2Energy") : null;
- pmt1Chi2 = (p.get("pmt1Chi2") != null) ? p.getFloatArray("pmt1Chi2") : null;
- pmt2Chi2 = (p.get("pmt2Chi2") != null) ? p.getFloatArray("pmt2Chi2") : null;
- pmt1Time = (p.get("pmt1Time") != null) ? p.getFloatArray("pmt1Time") : null;
- pmt2Time = (p.get("pmt2Time") != null) ? p.getFloatArray("pmt2Time") : null;
-
- pmt1Gain = (p.get("pmt1Gain") != null) ? p.getIntArray("pmt1Gain") : null;
- pmt2Gain = (p.get("pmt2Gain") != null) ? p.getIntArray("pmt2Gain") : null;
-
- pmt1Pedestal = (p.get("pmt1Pedestal") != null) ? p.getFloatArray("pmt1Pedestal") : null;
- pmt2Pedestal = (p.get("pmt2Pedestal") != null) ? p.getFloatArray("pmt2Pedestal") : null;
-
- pmt1Number = (p.get("pmt1Number") != null) ? p.getIntArray("pmt1Number") : null;
- pmt2Number = (p.get("pmt2Number") != null) ? p.getIntArray("pmt2Number") : null;
-
- int[] adc1 = (p.get("adcCounts1") != null) ? p.getIntArray("adcCounts1") : null;
- int[] adc2 = (p.get("adcCounts2") != null) ? p.getIntArray("adcCounts2") : null;
-
- // by zdenek (2008-09-15):
- // raw time: later additions to tilecal pulse shapes, doens't necessarily
- // have to be in the event files, will not be in the old ones
- pmt1RawTime = (p.get("pmt1RawTime") != null) ? p.getFloatArray("pmt1RawTime") : null;
- pmt2RawTime = (p.get("pmt2RawTime") != null) ? p.getFloatArray("pmt2RawTime") : null;
-
- // by zdenek (2008-11-24):
- // pmt1RawAmplitude, pmt2RawAmplitude now used to calculate pulse shape
- // this is made now obligatory, without this data, the pulse shapes will
- // not be available
- pmt1RawAmplitude = (p.get("pmt1RawAmplitude") != null) ? p.getFloatArray("pmt1RawAmplitude") : null;
- pmt2RawAmplitude = (p.get("pmt2RawAmplitude") != null) ? p.getFloatArray("pmt2RawAmplitude") : null;
-
- // read in ADCCounts
- if(adc1 != null && adc2 != null)
- {
- adcCounts1 = new int[numData][0];
- adcCounts2 = new int[numData][0];
- // amount of numbers associated with each cells (i.e. with each data item)
- int multiple = adc1.length / numData;
- int num = 0;
- for (int i = 0; i < numData; i++)
- {
- adcCounts1[i] = new int[multiple];
- adcCounts2[i] = new int[multiple];
- for (int j = 0; j < multiple; j++)
- {
- adcCounts1[i][j] = adc1[num]; // fill in array for each cell
- adcCounts2[i][j] = adc2[num]; // fill in array for each cell
- num++;
- }
- }
- }
-
- pulseShapesDataAvailable = false;
- if(adcCounts1 != null && adcCounts2 != null && adcCounts1.length != 0 &&
- adcCounts2.length != 0 && adcCounts1[0].length != 0 &&
- adcCounts2[0].length != 0 && pmt1Number != null &&
- pmt2Number != null && pmt1Energy != null && pmt2Energy != null &&
- pmt1Time != null && pmt2Time != null && pmt1Pedestal != null &&
- pmt2Pedestal != null && pmt1Gain != null && pmt2Gain != null &&
- pmt1RawAmplitude != null && pmt2RawAmplitude != null)
- {
- pulseShapesDataAvailable = true;
-
- logger.debug(CALORIMETER_NAME +
- ": data for real pulse shape plots available");
-
- if(ACalorimeterRPSPLT.areTileLookupTablesInitialized())
- {
- logger.debug(CALORIMETER_NAME +
- ": lookup tables have already been read in");
- }
- else
- {
-
- logger.debug(CALORIMETER_NAME +
- ": lookup table values have not been read in yet\n" +
- " trying to read file: " + LOOKUP_TABLE_FILE);
-
- try
- {
- readLookupTableFile();
- logger.debug(CALORIMETER_NAME +
- ": values from " + LOOKUP_TABLE_FILE +
- " successfully read in");
- }
- catch(AAtlantisException ex)
- {
- logger.error(CALORIMETER_NAME +
- ": reading " + LOOKUP_TABLE_FILE +
- " failed, real pulse shapes plots will not " +
- "be available, reason: " + ex.getMessage(), ex);
- pulseShapesDataAvailable = false;
- }
- }
- }
-
- } // readPulseShapePlotData() -------------------------------------------
-
-
-
- protected void applyCuts()
- {
- super.applyCuts();
- cut("CutsCalo", "TileET", "TileET", et);
- cut("CutsCalo", "TileEnergyBottom", "TileEnergyBottom", energy);
- cut("CutsCalo", "TileEnergyUp", "TileEnergyUp", energy);
-
- // following cut is based on pmt1ADCStatus, resp. pmt2ADCStatus
- if(pmt1ADCStatus != null && pmt2ADCStatus != null)
- {
- cut("CutsCalo", "TilePMTADC", "TilePMTADC", pmt1ADCStatus);
- cut("CutsCalo", "TilePMTADC", "TilePMTADC", pmt2ADCStatus);
- }
- }
-
-
-
- /**
- * Returns the name of the parameter group.
- * @return String parameter group
- */
- public String getParameterGroup()
- {
- return "TILE";
- }
-
- /**
- * Returns the name of the datatype.
- * @return String datatype
- */
- public String getName()
- {
- return "TILE";
- }
-
- /**
- * Returns the displayed name of datatype
- * @return String screen name
- */
- public String getNameScreenName()
- {
- return "TILE";
- }
-
- /**
- * Returns the type of calorimeter (ECAL/HCAL) for a hit.
- * @param index int hit index
- * @return String calorimeter type
- */
- public String getCalorimeterType(int index)
- {
- return "HCAL";
- }
-
- @Override //ACalorimeterData
- //Gives the hit time for this Tile cell based on the PMT times
- protected double getTime(int hit)
- {
- if (pmt1Time == null) return 0.0;
- else if (pmt2Time == null) return 0.0;
- else {
- if (pmt1Time[hit]!=0.0 && pmt2Time[hit]!=0.0){
- return (pmt1Time[hit]+pmt2Time[hit])/2.;
- }
- if (pmt1Time[hit]==0.0 && pmt2Time[hit]!=0.0){
- return pmt2Time[hit];
- }
- if (pmt1Time[hit]!=0.0 && pmt2Time[hit]==0.0){
- return pmt1Time[hit];
- }
- }
- return 0.0;
- }
-
- /**
- * Returns calo hit info, most of the parameters are taken from from
- * (mother) ACalorimeterData class.
- * @param index int
- * @return String
- */
- public String getHitInfo(int index)
- {
- int simpleOutput = AGlobals.instance().getSimpleOutput();
- if(simpleOutput>0){
- String output = getNameScreenName()+" index: " + index;
- if(simpleOutput==1 || simpleOutput==3)
- output+= "\n ET="+String.format("%.3f",et[index])+" GeV\n "+
- AMath.ETA+" = "+String.format("%.3f",eta[index])+"\n "+
- AMath.PHI+" = "+String.format("%.3f",Math.toDegrees(phi[index]))+AMath.DEGREES;
- if(simpleOutput==2 || simpleOutput==3)
- output+= "\n Ex="+String.format("%.3f",et[index]*Math.cos(phi[index]))+" GeV "+
- "\n Ey="+String.format("%.3f",et[index]*Math.sin(phi[index]))+" GeV "+
- "\n Ez="+String.format("%.3f",et[index]*Math.sinh(eta[index]))+" GeV ";
- return output;
- }
-
- String t = "";
- String pmt1Info = "";
- String pmt2Info = "";
-
- String decodedId = AIdHelper.getDecodedTileIndentifier(id[index]);
- t = decodedId + " " + super.getHitInfoNoDecode(index);
-
-
- pmt1Info += "\n PMT1 ADC status = ";
- pmt1Info += (pmt1ADCStatus != null) ? Integer.toString(pmt1ADCStatus[index]) : "n/a";
-
- pmt1Info += "\n PMT1 energy = ";
- pmt1Info += (pmt1Energy != null) ? Float.toString(pmt1Energy[index]) +
- " GeV" : "n/a";
- pmt1Info += "\n PMT1 chi2 = ";
- pmt1Info += (pmt1Chi2 != null) ? Float.toString(pmt1Chi2[index]) : "n/a";
- pmt1Info += "\n PMT1 time = ";
- pmt1Info += (pmt1Time != null) ? Float.toString(pmt1Time[index]) +
- " ns" : "n/a";
- pmt1Info += "\n PMT1 gain = ";
- pmt1Info += (pmt1Gain != null) ? Integer.toString(pmt1Gain[index]) : "n/a";
- pmt1Info += "\n PMT1 pedestal = ";
- pmt1Info += (pmt1Pedestal != null) ? Float.toString(pmt1Pedestal[index]) +
- " ADC counts" : "n/a";
-
-
- pmt2Info += "\n PMT2 ADC status = ";
- pmt2Info += (pmt2ADCStatus != null) ? Integer.toString(pmt2ADCStatus[index]) : "n/a";
-
- pmt2Info += "\n PMT2 energy = ";
- pmt2Info += (pmt2Energy != null) ? Float.toString(pmt2Energy[index]) +
- " GeV" : "n/a";
- pmt2Info += "\n PMT2 chi2 = ";
- pmt2Info += (pmt2Chi2 != null) ? Float.toString(pmt2Chi2[index]) : "n/a";
- pmt2Info += "\n PMT2 time = ";
- pmt2Info += (pmt2Time != null) ? Float.toString(pmt2Time[index]) +
- " ns" : "n/a";
- pmt2Info += "\n PMT2 gain = ";
- pmt2Info += (pmt2Gain != null) ? Integer.toString(pmt2Gain[index]) : "n/a";
- pmt2Info += "\n PMT2 pedestal = ";
- pmt2Info += (pmt2Pedestal != null) ? Float.toString(pmt2Pedestal[index]) +
- " ADC counts" : "n/a";
-
- pmt2Info += pulseShapesDataAvailable ? "" :
- "\n data for real pulse shapes plot n/a";
-
- pmt2Info += "\n calc time = "+getTime(index);
-
- return t + pmt1Info + pmt2Info;
-
- } // getHitInfo() -------------------------------------------------------
-
-
-
- // calculate real pulse shapes values based on the values in the lookup tables
- private double getPhysicsPulseShape(double xTime, double pmtTime,
- double pmtPedestal, double pmtEnergy,
- float[] amplitude, float[] time)
- throws AAtlantisException
- {
- double tdiv = 0.0;
- int lookup = 0;
- double localTime = 0.0;
- double xpulse = 0.0;
-
- // need to get "multiple" parameter ( = number of values in adcCounts
- // for each cell - adcCounts1[0].length), shall be the same for all the
- // cells - taking the length of the first array (for the first cell)
- // [currently (2007-05-23) is this multiple 9 but to change in real data]
- // no NullPointer or ArrayIndexBound checks are necessary here as this
- // method shall only be called when the relevant data is available
- double centerOfSamples = (adcCounts1[0].length + 1.0) / 2.0;
-
- tdiv = time[1] - time[0];
- localTime = (xTime - centerOfSamples) * 25.0 - pmtTime;
- lookup = (int) ((localTime - time[0]) / tdiv);
-
- if(lookup < 0)
- {
- lookup = 0;
- }
- if(lookup >= NUMBER_OF_LOOKUP_VALUES - 1)
- {
- lookup = NUMBER_OF_LOOKUP_VALUES - 2; // -1 was off by 1
- }
-
- try
- {
- if(lookup == 0 || lookup == NUMBER_OF_LOOKUP_VALUES - 2)
- {
- xpulse = amplitude[lookup];
- }
- else
- {
- xpulse = amplitude[lookup] + ((amplitude[lookup + 1] -
- amplitude[lookup]) / tdiv) * (localTime - time[lookup]);
- }
- }
- catch(ArrayIndexOutOfBoundsException ex)
- {
- String m = "ATILEData.getPhysicsPulseShape():\n" +
- " lookup index out of bound: lookup = " + lookup;
- throw new AAtlantisException(m);
- }
- return (xpulse * pmtEnergy) + pmtPedestal;
-
- } // getPhysicsPulseShape() ---------------------------------------------
-
-
-
-// /**
-// * Call util class which plots cell pulse shapes provided that
-// * all real pulse shapes data is available
-// * Functions calculates values of real pulse shape calculated in the method
-// * getPhysicsPulseShape().
-// * This method is called from pick interaction.
-// *
-// * @param index int
-// */
- /*public void plotPulseShapes(int index)
- {
-
- if(pulseShapesDataAvailable)
- {
- String title = getPulseTitleString(index);
-
- // two channels for a TILE cell (two arrays of ADC counts)
- int[][] adcCounts = new int[][] { adcCounts1[index], adcCounts2[index] };
-
- if(super.checkADCCountsAvailability(adcCounts))
- {
- // adc counts are available
- logger.debug(CALORIMETER_NAME + " adc counts (digits) are " +
- "available for pulse shapes plots for this cell.");
- }
- else
- {
- AOutput.append("\nADC counts are not available for this cell, " +
- "can't plot pulse shapes.", ALogPane.WARNING);
- return;
- }
-
-
- String cap1 = "Real pulse shape " + "PMT " + pmt1Number[index] +
- " gain " + pmt1Gain[index];
- String cap2 = "Real pulse shape " + "PMT " + pmt2Number[index] +
- " gain " + pmt2Gain[index];
- String[] subTitle = new String[] { cap1, cap2 };
-
- // by zdenek (2008-11-24):
- // energy calculations (lowGainFactor, highGainFactor) and related
- // magic constants removed - now using pmt1RawAmplitude, pmt2RawAmplitude
- // instead of pmt[1,2]Energy, resp. former local variables
- // energy1, energy2 when calling getPhysicsPulseShape() further down
-
- // 1 .. 9 range (9 values of ADC counts, 9 samples (starts from 1!)),
- // need to get 401 values within this range. number of samples will
- // likely decrease in real data from 9 to 7
- double step = (adcCounts1[index].length - 1) / (float) NUMBER_OF_LOOKUP_VALUES;
- double[][] realPulse = new double[2][NUMBER_OF_LOOKUP_VALUES]; // 2 channels
- double[][] realPulseForRawTime = null;
- double d = 1.0;
-
- // if pmt1RawTime and pmt2RawTime are present, use those for
- // calculating data for real pulse shape plot based on these time values
- boolean showPlotForRawTime = false;
- if(pmt1RawTime != null && pmt2RawTime != null)
- {
- logger.debug("TILE pmt[1,2]RawTime are present, showing another plot.");
- showPlotForRawTime = true;
- realPulseForRawTime = new double[2][NUMBER_OF_LOOKUP_VALUES]; // 2 channels
- }
-
-
- // by zdenek 2008-11-25
- // DPD (slimed version of ESD) sometimes don't have pmt[1,2]Pedestal
- // for a cell (the tag exists, values are there, but are 0). check
- // if pedestal is 0 and if so, take as pedestal value the first
- // adc count digit
- float pmt1PedestalLocal = pmt1Pedestal[index];
- float pmt2PedestalLocal = pmt2Pedestal[index];
- if(pmt1PedestalLocal == 0.0f && pmt2PedestalLocal == 0.0f)
- {
- logger.debug("TILE pmt[1,2]Pedestal are not available (i.e. " +
- "are 0.0f), using minimum of first and last " +
- "adcCount digit as pedestal.");
- float last1 = adcCounts1[index][adcCounts1[index].length - 1];
- float last2 = adcCounts2[index][adcCounts2[index].length - 1];
- pmt1PedestalLocal = Math.min(adcCounts1[index][0], last1);
- pmt2PedestalLocal = Math.min(adcCounts2[index][0], last2);
- }
-
-
- try
- {
- for(int i = 0; i < NUMBER_OF_LOOKUP_VALUES; i++)
- {
- d += step;
- realPulse[0][i] =
- getPhysicsPulseShape(d, pmt1Time[index], pmt1PedestalLocal,
- pmt1RawAmplitude[index],
- ACalorimeterRPSPLT.TILE_AMPLITUDE,
- ACalorimeterRPSPLT.TILE_TIME);
- realPulse[1][i] =
- getPhysicsPulseShape(d, pmt2Time[index], pmt2PedestalLocal,
- pmt2RawAmplitude[index],
- ACalorimeterRPSPLT.TILE_AMPLITUDE,
- ACalorimeterRPSPLT.TILE_TIME);
- if(showPlotForRawTime)
- {
- realPulseForRawTime[0][i] =
- getPhysicsPulseShape(d, pmt1RawTime[index], pmt1PedestalLocal,
- pmt1RawAmplitude[index],
- ACalorimeterRPSPLT.TILE_AMPLITUDE,
- ACalorimeterRPSPLT.TILE_TIME);
- realPulseForRawTime[1][i] =
- getPhysicsPulseShape(d, pmt2RawTime[index], pmt2PedestalLocal,
- pmt2RawAmplitude[index],
- ACalorimeterRPSPLT.TILE_AMPLITUDE,
- ACalorimeterRPSPLT.TILE_TIME);
- }
- }
- }
- catch(AAtlantisException aaex)
- {
- AOutput.append(aaex.getMessage(), ALogPane.WARNING);
- return;
- }
-
- if(realPulseForRawTime != null)
- {
- APulseShapePlot.plotRealPulseShapes(adcCounts, realPulse,
- step, subTitle, title + " (cell time)");
- APulseShapePlot.plotRealPulseShapes(adcCounts, realPulseForRawTime,
- step, subTitle, title + " (raw time)");
- }
- else
- {
- // if RawTime stuff is to be removed, there will remain only
- // one such call to plot real pulse shapes - this one
- APulseShapePlot.plotRealPulseShapes(adcCounts, realPulse,
- step, subTitle, title);
- }
- }
- else
- {
- logger.warn(CALORIMETER_NAME + " plotPulseShapes() method called, " +
- "but data is not available.");
- return;
- }
-
- } */// plotPulseShapes() --------------------------------------------------
-
-
-
- /**
- * Returns the histograms for this projection.
- *
- * @param projection AProjection2D current projection
- * @return ACoord[] polygons representing histograms
- */
- protected ACoord[] getUserHistograms(AProjection2D projection)
- {
- ACoord[] data = ACoord.NO_HISTOGRAMS;
- if (projection instanceof AProjectionYX && parameterStore.get("YX", "Mode").getI() == AProjectionYX.MODE_STANDARD)
- data = getYXHistograms();
- else if (projection instanceof AProjectionFR)
- data = getFRHistograms();
- else if (projection instanceof AProjectionRZ)
- data = getRZHistograms();
- return projection.nonLinearTransform(data);
- }
-
- @Override
- protected String getPulseTitleString(int index) {
- String[] decodedId = AIdHelper.getFullIdentifier(id[index]);
-
- String title = CALORIMETER_NAME + " cell: " + decodedId[0];
-
- return title;
- }
-
- @Override
- protected int[][] getADCCounts(int index) {
-
- if (pulseShapesDataAvailable) {
- // two channels for a TILE cell (two arrays of ADC counts)
- return new int[][]{adcCounts1[index], adcCounts2[index]};
- } else {
- return null;
- }
- }
-
- @Override
- protected double[][] getPulseShape(int index) {
-
- if (!pulseShapesDataAvailable) return null;
-
- // by zdenek (2008-11-24):
- // energy calculations (lowGainFactor, highGainFactor) and related
- // magic constants removed - now using pmt1RawAmplitude, pmt2RawAmplitude
- // instead of pmt[1,2]Energy, resp. former local variables
- // energy1, energy2 when calling getPhysicsPulseShape() further down
-
- // 1 .. 9 range (9 values of ADC counts, 9 samples (starts from 1!)),
- // need to get 401 values within this range. number of samples will
- // likely decrease in real data from 9 to 7
- double step = getPulseStep(index);
- double[][] realPulseRaw = new double[2][NUMBER_OF_LOOKUP_VALUES]; // 2 channels
- double d = 1.0;
-
- // if pmt1RawTime and pmt2RawTime are present, use those for
- // calculating data for real pulse shape plot based on these time values
- if (pmt1RawTime == null || pmt2RawTime == null) {
- logger.warn("No raw time values available");
- return null;
- }
-
-
- // by zdenek 2008-11-25
- // DPD (slimed version of ESD) sometimes don't have pmt[1,2]Pedestal
- // for a cell (the tag exists, values are there, but are 0). check
- // if pedestal is 0 and if so, take as pedestal value the first
- // adc count digit
- float pmt1PedestalLocal = pmt1Pedestal[index];
- float pmt2PedestalLocal = pmt2Pedestal[index];
- if (pmt1PedestalLocal == 0.0f && pmt2PedestalLocal == 0.0f) {
- logger.debug("TILE pmt[1,2]Pedestal are not available (i.e. " +
- "are 0.0f), using minimum of first and last " +
- "adcCount digit as pedestal.");
- float last1 = adcCounts1[index][adcCounts1[index].length - 1];
- float last2 = adcCounts2[index][adcCounts2[index].length - 1];
- pmt1PedestalLocal = Math.min(adcCounts1[index][0], last1);
- pmt2PedestalLocal = Math.min(adcCounts2[index][0], last2);
- }
-
- try {
- for (int i = 0; i < NUMBER_OF_LOOKUP_VALUES; i++) {
- d += step;
- realPulseRaw[0][i] =
- getPhysicsPulseShape(d, pmt1RawTime[index], pmt1PedestalLocal,
- pmt1RawAmplitude[index],
- ACalorimeterRPSPLT.TILE_AMPLITUDE,
- ACalorimeterRPSPLT.TILE_TIME);
- realPulseRaw[1][i] =
- getPhysicsPulseShape(d, pmt2RawTime[index], pmt2PedestalLocal,
- pmt2RawAmplitude[index],
- ACalorimeterRPSPLT.TILE_AMPLITUDE,
- ACalorimeterRPSPLT.TILE_TIME);
- }
- } catch (AAtlantisException aaex) {
- AOutput.append(aaex.getMessage(), ALogInterface.WARNING);
- return null;
- }
-
- return realPulseRaw;
- }
-
- protected double[][] getPulseShapeCellTime(int index) {
-
- if (!pulseShapesDataAvailable) return null;
-
- double step = getPulseStep(index);
- double[][] realPulse = new double[2][NUMBER_OF_LOOKUP_VALUES]; // 2 channels
- double d = 1.0;
-
- // by zdenek 2008-11-25
- // DPD (slimed version of ESD) sometimes don't have pmt[1,2]Pedestal
- // for a cell (the tag exists, values are there, but are 0). check
- // if pedestal is 0 and if so, take as pedestal value the first
- // adc count digit
- float pmt1PedestalLocal = pmt1Pedestal[index];
- float pmt2PedestalLocal = pmt2Pedestal[index];
- if (pmt1PedestalLocal == 0.0f && pmt2PedestalLocal == 0.0f) {
- logger.debug("TILE pmt[1,2]Pedestal are not available (i.e. " +
- "are 0.0f), using minimum of first and last " +
- "adcCount digit as pedestal.");
- float last1 = adcCounts1[index][adcCounts1[index].length - 1];
- float last2 = adcCounts2[index][adcCounts2[index].length - 1];
- pmt1PedestalLocal = Math.min(adcCounts1[index][0], last1);
- pmt2PedestalLocal = Math.min(adcCounts2[index][0], last2);
- }
-
- try {
- for (int i = 0; i < NUMBER_OF_LOOKUP_VALUES; i++) {
- d += step;
- realPulse[0][i] =
- getPhysicsPulseShape(d, pmt1Time[index], pmt1PedestalLocal,
- pmt1RawAmplitude[index],
- ACalorimeterRPSPLT.TILE_AMPLITUDE,
- ACalorimeterRPSPLT.TILE_TIME);
- realPulse[1][i] =
- getPhysicsPulseShape(d, pmt2Time[index], pmt2PedestalLocal,
- pmt2RawAmplitude[index],
- ACalorimeterRPSPLT.TILE_AMPLITUDE,
- ACalorimeterRPSPLT.TILE_TIME);
- }
- } catch (AAtlantisException aaex) {
- AOutput.append(aaex.getMessage(), ALogInterface.WARNING);
- return null;
- }
-
- return realPulse;
- }
-
-
- @Override
- protected double getPulseStep(int index) {
- return (adcCounts1[index].length - 1) / (float) NUMBER_OF_LOOKUP_VALUES;
- }
-
- @Override
- protected String[] getPulseSubtitle(int index) {
- String cap1 = "Real pulse shape " + "PMT " + pmt1Number[index] +
- " gain " + pmt1Gain[index];
- String cap2 = "Real pulse shape " + "PMT " + pmt2Number[index] +
- " gain " + pmt2Gain[index];
- return new String[]{cap1, cap2};
- }
-
- public void plotPulseShapesWithTiming(int index) {
-
- int[][] adc = getADCCounts(index);
- double[][] raw = getPulseShape(index);
- double[][] cell = getPulseShapeCellTime(index);
-
- if (adc == null || raw == null || cell == null) {
- logger.warn("Pulse shapes with raw/cell times requested but no " +
- "data available, falling back to regular pulse shapes");
- plotPulseShapes(index, true);
- } else {
- APulseShapePlot.plotRawCellPulseShapes(adc, raw, cell,
- getPulseStep(index), getPulseSubtitle(index),
- getPulseTitleString(index));
- }
-
- /*if (!withcurve) {
- APulseShapePlot.plotADCCounts(adc, getPulseTitleString(index), null);
- } else {
- double[][] ps = getPulseShape(index);
- if (ps == null) {
- logger.warn("No pulse shape information available, just plotting adc instead");
- APulseShapePlot.plotADCCounts(adc, getPulseTitleString(index), null);
- } else {
- APulseShapePlot.plotRealPulseShapes(adc, ps,
- getPulseStep(index), getPulseSubtitle(index), getPulseTitleString(index));
- }
- }*/
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/data/ATRTData.java b/graphics/AtlantisJava/src/atlantis/data/ATRTData.java
deleted file mode 100644
index c77849df8a9..00000000000
--- a/graphics/AtlantisJava/src/atlantis/data/ATRTData.java
+++ /dev/null
@@ -1,752 +0,0 @@
-package atlantis.data;
-
-import java.awt.event.ActionEvent;
-import java.awt.geom.Point2D;
-import java.util.Collection;
-import java.util.HashMap;
-import java.util.HashSet;
-import java.util.Iterator;
-import java.util.Set;
-import java.util.Vector;
-
-import javax.swing.AbstractAction;
-import javax.swing.Action;
-import javax.swing.tree.DefaultMutableTreeNode;
-
-import atlantis.canvas.ACanvas;
-import atlantis.event.AData;
-import atlantis.event.AEvent;
-import atlantis.globals.AGlobals;
-import atlantis.graphics.ACoord;
-import atlantis.graphics.colormap.AColorMap;
-import atlantis.list.AList;
-import atlantis.list.AListManager;
-import atlantis.output.ALogInterface;
-import atlantis.output.AOutput;
-import atlantis.parameters.AEnumeratorParameter;
-import atlantis.parameters.AParameter;
-import atlantis.parameters.AParameterUtilities;
-import atlantis.utils.AAtlantisException;
-import atlantis.utils.AHashMap;
-import atlantis.utils.AIdHelper;
-import atlantis.utils.AMath;
-
-
-/**
- *
- * Transition Radiation Tracker data
- *
- * data from the event file
- * id - processed by AData
- * barcode (old) / barcodes and numBarcodes (new) - processed by AHitData
- * phi
- * rhoz - rho (for barrel) or z (for endcap)
- * driftR - drift radius
- * threshold
- * sub - subdetector
- *
- * still need to have correct phi calculated from pVtx for cuts
- * still need to have correct rho calculated from pVtx for cuts
- *
- */
-public class ATRTData extends AHitData
-{
- protected float[] phi = null;
- protected float[] rhoz = null;
- protected float[] driftR = null;
- protected int[] threshold = null;
- protected int[] noise = null;
- // bitPattern subtag information implemented in the retriever but
- // currently (2009-01-21) not used or necessary but
- // said to may become useful later
- protected int[] bitPattern = null;
- protected float[] timeOverThreshold = null;
- protected HashMap<String, int[]> driftSign = new HashMap<String, int[]>();
- protected HashMap<String, int[]> isOutlier = new HashMap<String, int[]>();
- //error code for when driftSign/isOutlier is not present
- private static final int NO_DATA =-99;
-
-
-
- public String getParameterGroup()
- {
- return "TRT";
- }
-
-
- public String getName()
- {
- return "TRT";
- }
-
-
- public String getNameScreenName()
- {
- return "TRT_DriftCircle";
- }
-
-
- public int getDriftSign(int index)
- {
- //find current selection of track
- AEnumeratorParameter listBox = (AEnumeratorParameter) parameterStore.get("InDetTrack", "InDetTrackCollections");
- String currentSelection = listBox.getCurrentText();
- if(driftSign!=null && !currentSelection.equals("All"))
- {
- //find data from current track
- int[] data = (int[]) driftSign.get(currentSelection);
- if(data!=null)
- return data[index];
- }
- //no present so return error code
- return NO_DATA;
- }
-
-
- public int getIsOutlier(int index)
- {
- //find current selection of track
- AEnumeratorParameter listBox = (AEnumeratorParameter) parameterStore.get("InDetTrack", "InDetTrackCollections");
- String currentSelection = listBox.getCurrentText();
- if(isOutlier!=null && !currentSelection.equals("All"))
- {
- //find data from current track
- int[] data = (int[]) isOutlier.get(currentSelection);
- if(data!=null)
- return data[index];
- }
- //no present so return error code
- return NO_DATA;
- }
-
-
- public String getHitInfo(int index)
- {
- int simpleOutput = AGlobals.instance().getSimpleOutput();
- if(simpleOutput>0) return getNameScreenName()+" index: " + index+"\n"+
- AMath.PHI+" = "+String.format("%.3f",Math.toDegrees(phi[index]))+AMath.DEGREES;
-
- StringBuilder s = new StringBuilder();
- String[] decodedId = AIdHelper.getFullIdentifier(id[index]);
- s.append(getNameScreenName() + " (id: " + decodedId[0] +
- " index: " + index + ")");
- // iterate over decodedId to get further details (if available),
- // first item [0] was already printed out above
- for(int i = 1; i < decodedId.length; i++)
- {
- s.append("\n " + decodedId[i]);
- }
- if(sub[index] == 1 || sub[index] == 2)
- {
- s.append("\n " + AMath.RHO + " = " + String.format("%.1f",rhoz[index]) + " cm");
- }
- else
- {
- s.append("\n z = " + String.format("%.1f",rhoz[index]) + " cm");
- }
- s.append("\n " + AMath.PHI + " = " +
- String.format("%.1f",Math.toDegrees(phi[index])) + AMath.DEGREES +
- " (" + String.format("%.3f",phi[index]) + " rad)" +
- "\n drift radius = " + String.format("%.3f",driftR[index]) + " cm" +
- "\n threshold = " + threshold[index] +
- "\n sub = " + sub[index]);
-
- s.append(super.getHitInfo(index)); // finds barcode information
-
- int d = getDriftSign(index);
- s.append((d!=NO_DATA) ? ("\n driftSign = " + d) : "\n driftSign = n/a");
- int o = getIsOutlier(index);
- s.append((o!=NO_DATA) ? ("\n isOutlier = " + o) : "\n isOutlier = n/a");
- s.append("\n noise = " + (noise != null ? noise[index] : "n/a"));
- s.append("\n time over threshold = " +
- (timeOverThreshold != null ? timeOverThreshold[index] : "n/a"));
-
- return s.toString();
-
- } // getHitInfo() -------------------------------------------------------
-
-
- public ATRTData(AHashMap p, AEvent e)
- {
- super(p,e);
- phi = p.getFloatArray("phi");
- rhoz = p.getFloatArray("rhoz");
- driftR = p.getFloatArray("driftR");
- threshold = p.getUnknownIntArray("threshold");
- noise = p.getUnsureIntArray("noise");
- if(p.getIntArray("sub") == null)
- {
- for(int i=0; i<numData; i++)
- {
- sub[i] = getSub(id[i]);
- }
- }
- // the way to retrieve bitPattern subtag information
- // currently (2009-01-21) not used or necessary but
- // said to may become useful later
- // bitPattern = p.getIntArray("bitPattern");
- timeOverThreshold = p.getFloatArray("timeOverThreshold");
-
- } // ATRTData() ---------------------------------------------------------
-
-
- protected int internalColor()
- {
- int numColorTypes = super.internalColor();
- int colorFunction = parameterStore.get(PARAMETER_GROUP, "ColorFunction").getI();
-
- if(colorFunction == numColorTypes + 1) // colour by Track Segment
- {
- colorBy(getSegments());
- }
- else if(colorFunction == numColorTypes + 2) // colour by isOutlier
- {
- for(int i=0; i<numDraw; i++)
- {
- int list = listdl[i];
- int iO = getIsOutlier(list);
- if(iO==0)
- color[list]= AColorMap.GN;//green
- else if(iO==1)
- color[list]= AColorMap.RD;//red
- else
- color[list]= (byte) parameterStore.get(PARAMETER_GROUP, "Constant").getI();
- }
- }
- else if(colorFunction == numColorTypes + 3) // colour by driftSign
- {
- for(int i=0; i<numDraw; i++)
- {
- int list = listdl[i];
- int ds = getDriftSign(list);
- if(ds==-1)
- color[list]= AColorMap.GN;//green
- else if(ds==1)
- color[list]= AColorMap.RD;//red
- else
- color[list]= (byte) parameterStore.get(PARAMETER_GROUP, "Constant").getI();
- }
- }
- else if(colorFunction == numColorTypes + 4) // colour by threshold
- {
- for(int i=0; i<numDraw; i++)
- {
- int list = listdl[i];
- if(threshold[list]==1)
- color[list]= AColorMap.RD; // red is preferable then previous green
- else
- color[list]= (byte) parameterStore.get(PARAMETER_GROUP, "Constant").getI();
- }
- }
- return numColorTypes + 1;
-
- } // internalColor() ----------------------------------------------------
-
-
-
- public int getLayer(int id)
- {
- try {
- return AIdHelper.trtLayerWheel(id);
- } catch (AAtlantisException e) {
- return 0;
- }
- //return(id & 0x01F00000) >> 20; before using IDHelper
- }
-
-
-
- public int getSub(int id)
- {
- try {
- return AIdHelper.trtBarrelEndcap(id);
- } catch (AAtlantisException e) {
- return 0;
- }
- //return(id & 0x06000000) >> 25; before using IDHelper
- }
-
-
-
- protected void applyCuts()
- {
- cutIndex();
- cut("CutsInDet", "Threshold", " Threshold", threshold);
- cutSimulatedTracks();
- cutReconstructedTracks();
- cutSegments();
- cutPhi(phi);
- cutEta();
-
- // cut noise
- if(noise != null && parameterStore.get("CutsInDet", "Noise").getStatus())
- {
- cutArray(noise, 0, "TRT Noise Cut");
- }
-
- // cut TimeOverThreshold
- // method takes care that the cut is actually turned on
- // or if the timeOverThreshold array is null (n/a in the event file)
- cut("CutsInDet", "TRTTimeOverThreshold",
- "TRTTimeOverThreshold", timeOverThreshold);
- }
-
-
-
- private void keepBarrel()
- {
- int num = 0;
- int cutSub = parameterStore.get("CutsInDet", "TRT").getI();
- for(int i = 0; i < numDraw; i++)
- {
- // sub values 1 and 2 - barrel
- if(sub[listdl[i]] == 1 || sub[listdl[i]] == 2)
- {
- if(cutSub == -1 || sub[listdl[i]] == cutSub)
- {
- listdl[num++] = listdl[i];
- }
- }
- }
- numDraw = num;
- }
-
-
-
- private void keepEndcap()
- {
- int num = 0;
- for(int i = 0; i < numDraw; i++)
- {
- // sub values 0 and 3 - endcaps
- if(sub[listdl[i]] == 0 || sub[listdl[i]] == 3)
- {
- listdl[num++] = listdl[i];
- }
- }
- numDraw = num;
- }
-
-
-
- private void cutEta()
- {
- AParameter par = parameterStore.get("CutsATLAS", "CutEta");
- if(!par.getStatus())return;
- double etaCut = par.getD();
- double etaMid = parameterStore.get("CutsATLAS", "EtaMiddle").getD();
- double etaLowerCut = etaMid - etaCut;
- double etaUpperCut = etaMid + etaCut;
- int num = 0;
- for(int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
- double z1, z2, r1, r2;
- if(sub[list] == 0 || sub[list] == 3)
- {
- // endcap
- z1 = rhoz[list];
- z2 = rhoz[list];
- r1 = 64.;
- if(Math.abs(rhoz[list]) > 280.) r1 = 48.;
- r2 = 103.;
- }
- else
- {
- // barrel
- z1 = 0.35;
- if(rhoz[list] < 62) z1 = 40.;
- z2 = 74.2;
- if(sub[list] == 1)
- {
- z1 *= -1.;
- z2 *= -1.;
- }
- r1 = rhoz[list];
- r2 = rhoz[list];
- }
- double eta1 = AParameterUtilities.eta(z1, r1);
- double eta2 = AParameterUtilities.eta(z2, r2);
- double etaLower = Math.min(eta1, eta2);
- double etaUpper = Math.max(eta1, eta2);
- if(etaUpper > etaLowerCut && etaLower < etaUpperCut)
- listdl[num++] = list;
- }
- numDraw = num;
- }
-
-
- // in XY only TRT barrel data are displayed
- protected ACoord getYXUser()
- {
- makeDrawList();
- keepBarrel();
- double zoomScaling=0;
- //check if zoomed in enough to display circles/drift sign arrows
- Point2D.Double[] corners = ACanvas.getCanvas().getPaintingWindow().getUserCorners();
- double widthx=corners[1].x-corners[0].x;
- double widthy=corners[0].y-corners[2].y;
- //average width of window
- double width=Math.sqrt(widthx*widthx+widthy*widthy);
- //calculate scaling (100 is arbitrary constant)
- zoomScaling=100/width;
- //now return relevant user coords depending on the zoom
- //(0.25 is arbitrary constant increase to turn on drawing
- // circles and arrows at a more zoomed in state)
- if(zoomScaling>0.25)
- return getYXUserCircle();
- else
- return getYXUserNormal();
- }
-
-
- /**
- * Will give coords for a line along the TRT drift
- */
- private ACoord getYXUserNormal()
- {
- double[][][] hv = new double[2][2][numDraw];
- int[] index = new int[numDraw];
- for(int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
- double r = rhoz[list];
- double cosPhi = Math.cos(phi[list]);
- double sinPhi = Math.sin(phi[list]);
- double d = driftR[list];
- double x = r * cosPhi;
- double y = r * sinPhi;
- hv[0][0][i] = x + d * sinPhi;
- hv[1][0][i] = y - d * cosPhi;
- hv[0][1][i] = x - d * sinPhi;
- hv[1][1][i] = y + d * cosPhi;
- index[i] = list;
- }
- return new ACoord(hv, index, this, ACoord.LINES);
- }
-
-
- /**
- * Will give coords for the drift circle and arrow showing the drift
- */
- private ACoord getYXUserCircle()
- {
- int numPoints = 48;
- int[] index = new int[numDraw];
- double[][][] hv = new double[2][numDraw][];
- for (int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
- int ds = getDriftSign(list);
- //adjust ds if z<0
- if(sub[list] == 1)
- {
- ds *= -1;
- }
- if(ds==1 || ds==-1)
- {
- //has drift sign so has extra points for arrow
- hv[0][i] = new double[numPoints+3];
- hv[1][i] = new double[numPoints+3];
- }
- else
- {
- hv[0][i] = new double[numPoints];
- hv[1][i] = new double[numPoints];
- ds=0;
- }
- double r = rhoz[list];
- double cosPhi = Math.cos(phi[list]);
- double sinPhi = Math.sin(phi[list]);
- double d = driftR[list];
- double x = r * cosPhi;
- double y = r * sinPhi;
- int jstart=0;
- //calculate starting point of circle
- if(ds==1 || ds ==-1)
- {
- jstart = (int) (phi[list]/(Math.PI * 2 / (numPoints - 1)));
- d*=ds;
- }
- //store points of circle
- int count=0;
- for (int j = jstart; j < numPoints; j++)
- {
- hv[0][i][count] = x + d * Math.sin(Math.PI * 2 * j / (numPoints - 1));
- hv[1][i][count] = y - d * Math.cos(Math.PI * 2 * j / (numPoints - 1));
- count++;
- }
- for (int j = 0; j < jstart; j++)
- {
- hv[0][i][count] = x + d * Math.sin(Math.PI * 2 * (j+1) / (numPoints - 1));
- hv[1][i][count] = y - d * Math.cos(Math.PI * 2 * (j+1) / (numPoints - 1));
- count++;
- }
- index[i] = list;
- //if has drift show arrow
- if(ds==1 || ds==-1)
- {
- //first line
- hv[0][i][numPoints] = hv[0][i][2*(numPoints-1)/5];
- hv[1][i][numPoints] = hv[1][i][2*(numPoints-1)/5];
- //back to end point of circle
- hv[0][i][numPoints+1] = hv[0][i][numPoints-1];
- hv[1][i][numPoints+1] = hv[1][i][numPoints-1];
- //second line
- hv[0][i][numPoints+2] = hv[0][i][3*(numPoints-1)/5];
- hv[1][i][numPoints+2] = hv[1][i][3*(numPoints-1)/5];
- }
- }
- return new ACoord(hv, index, this, ACoord.POLYLINES);
- }
-
-
- protected ACoord getRZUser()
- {
- // correction for primary vertex
- if(!parameterStore.get("RZ", "TRT").getStatus())return ACoord.NO_DATA;
- makeDrawList();
- // line size was found using findRZActiveArea(){
- // may need to be found again if geometry changes...
- double[][][] hv = new double[2][2][numDraw];
- int[] index = new int[numDraw];
- double phiMid = Math.toRadians(parameterStore.get("RZ", "Phi").getD());
- for(int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
- if(sub[list] == 0 || sub[list] == 3)
- {
- // endcap
- hv[0][0][i] = rhoz[list];
- hv[0][1][i] = rhoz[list];
- double phiDiff = Math.abs(phi[list] - phiMid);
- double r1 = 64.;
- if(Math.abs(rhoz[list]) > 280.) r1 = 48.;
- double r2 = 103.;
- if(phiDiff < Math.PI / 2. || phiDiff > 3 * Math.PI / 2.)
- {
- hv[1][0][i] = r1;
- hv[1][1][i] = r2;
- }
- else
- {
- hv[1][0][i] = -r1;
- hv[1][1][i] = -r2;
- }
- }
- else
- {
- // barrel
- double z1 = 0.35;
- if(rhoz[list] < 62) z1 = 40.;
- double z2 = 74.2;
- if(sub[list] == 1)
- {
- z1 *= -1.;
- z2 *= -1.;
- }
- hv[0][0][i] = z1;
- hv[0][1][i] = z2;
- double phiDiff = Math.abs(phi[list] - phiMid);
- if(phiDiff < Math.PI / 2. || phiDiff > 3 * Math.PI / 2.)
- {
- hv[1][0][i] = rhoz[list];
- hv[1][1][i] = rhoz[list];
- }
- else
- {
- hv[1][0][i] = -rhoz[list];
- hv[1][1][i] = -rhoz[list];
- }
- }
- index[i] = list;
- }
- return new ACoord(hv, index, this, ACoord.LINES);
- }
-
-
- protected ACoord getFRUser()
- {
- makeDrawList();
- keepBarrel();
- double[][][] hv = new double[2][2][numDraw];
- int[] index = new int[numDraw];
- double[] pVtx = event.getPrimaryVertex();
- for(int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
- double r = rhoz[list];
- double p = phi[list];
- double x = r * Math.cos(p);
- double y = r * Math.sin(p);
- double dx = x - pVtx[0];
- double dy = y - pVtx[1];
- r = Math.sqrt(dx * dx + dy * dy);
- p = Math.atan2(dy, dx);
- if(p < 0.) p += AMath.TWO_PI;
- double delPhi = driftR[list] / r;
- hv[0][0][i] = r;
- hv[1][0][i] = Math.toDegrees(p - delPhi);
- hv[0][1][i] = r;
- hv[1][1][i] = Math.toDegrees(p + delPhi);
- index[i] = list;
- }
- return new ACoord(hv, index, this, ACoord.LINES).includePhiWrapAround("FR");
- }
-
-
-
- protected ACoord getFZUser()
- {
- makeDrawList();
- keepEndcap();
- double[][][] hv = new double[2][2][numDraw];
- int[] index = new int[numDraw];
- for(int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
- double z = rhoz[list];
- // average rho from findRZActiveArea()
- double averageRho = 81.;
- if(Math.abs(z) > 280.)
- averageRho = 70.;
- double p = phi[list];
- double delPhi = driftR[list] / averageRho;
- hv[0][0][i] = z;
- hv[1][0][i] = Math.toDegrees(p - delPhi);
- hv[0][1][i] = z;
- hv[1][1][i] = Math.toDegrees(p + delPhi);
- index[i] = list;
- }
- return new ACoord(hv, index, this,
- ACoord.LINES).includePhiWrapAround("FZ");
- }
-
-
- public Action[] getActions(Collection nodes)
- {
- if(nodes.size() != 1)
- return new Action[0];
- final DefaultMutableTreeNode node = (DefaultMutableTreeNode) (nodes.
- iterator().next());
- AList[] list = AListManager.getInstance().getChildren(node);
- if(list == null)return new Action[0];
- Set hits = new HashSet();
- for(int i = 0; i < list.length; ++i)
- {
- if(list[i].getSource() == this)
- {
- for(int j = 0; j < list[i].getItems().length; j++)
- {
- hits.add(new Integer(list[i].getItems()[j]));
- }
- }
- else
- {
- return new Action[0];
- }
- }
- int numHits = hits.size();
- if(numHits < 2)
- return new Action[0];
- final int[] h = new int[numHits];
- Iterator i = hits.iterator();
- int n = 0;
- while(i.hasNext())
- {
- h[n++] = ((Integer) (i.next())).intValue();
- }
- Action[] action = new Action[1];
- action[0] = new AbstractAction("Find Eta")
- {
- public void actionPerformed(ActionEvent e)
- {
- final double MIN = 9999.;
- final double MAX = -9999.;
- double minRho = MIN;
- double maxRho = MAX;
- double minZ = MIN;
- double maxZ = MAX;
- for(int i = 0; i < h.length; ++i)
- {
- if(sub[h[i]] == 1 || sub[h[i]] == 2)
- {
- minRho = Math.min(minRho, rhoz[h[i]]);
- maxRho = Math.max(maxRho, rhoz[h[i]]);
- }
- else
- {
- minZ = Math.min(minZ, rhoz[h[i]]);
- maxZ = Math.max(maxZ, rhoz[h[i]]);
- }
- }
- AOutput.append("Eta results:\n minRho = " +
- String.format("%.3f",minRho) +
- " maxRho = " + String.format("%.3f",maxRho) + "\n" +
- " minZ = " + String.format("%.3f",minZ) +
- " maxZ = " + String.format("%.3f",maxZ) + "\n",
- ALogInterface.NORMAL);
- }
- };
- return action;
- }
-
-
- @Override
- protected void finalizeConstruction() {
- super.finalizeConstruction();
- Vector keys = (Vector) event.getCollections().get("InDetTrack");
- if(keys != null)
- {
- Iterator keysIterator = keys.iterator();
- //loop over collections
- while(keysIterator.hasNext())
- {
- String trackCollec = (String) keysIterator.next();
- AInDetTrackData data = (AInDetTrackData) (event.get("InDetTrack" + trackCollec));
- int[][] hits = event.getAssociationManager().get("InDetTrack" + trackCollec, getName());
- int[][] drifts = event.getAssociationManager().get("InDetTrack" + trackCollec + "Drift", getName());
- int[][] outliers = event.getAssociationManager().get("InDetTrack" + trackCollec + "Outlier", getName());
-
- if(drifts!=null || outliers!=null)
- {
- int[] driftSignData = new int[numData];
- int[] isOutlierData = new int[numData];
- //set to noData to distinguish from a 0 returned if the data is present
- for(int i=0; i<this.numData; i++)
- {
- driftSignData[i]=NO_DATA;
- isOutlierData[i]=NO_DATA;
- }
- //loop over alll hits in track collection
- for(int i=0; i<data.getNumData(); i++)
- {
- for(int j=0; j<hits[i].length; j++)
- {
- //check if current hit matches a TRT index
- int list=getIndexFromId(hits[i][j]);
- if(list!=-1)
- {
- //found match so save value if not null
- if(drifts!=null)
- driftSignData[list] = drifts[i][j];
- if(outliers!=null)
- isOutlierData[list] = outliers[i][j];
- }
- }
- }
- //if has data in file then save array of values
- if(drifts!=null)
- driftSign.put(trackCollec, driftSignData);
- if(outliers!=null)
- isOutlier.put(trackCollec, isOutlierData);
- }
- //no data for this collection in file so save null to vector
- if(drifts==null)
- driftSign.put(trackCollec, null);
- if(outliers==null)
- isOutlier.put(trackCollec, null);
- }
- }
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/data/ATauJetData.java b/graphics/AtlantisJava/src/atlantis/data/ATauJetData.java
deleted file mode 100755
index 91ebb9af775..00000000000
--- a/graphics/AtlantisJava/src/atlantis/data/ATauJetData.java
+++ /dev/null
@@ -1,198 +0,0 @@
-package atlantis.data;
-
-import java.util.Vector;
-
-import atlantis.event.*;
-import atlantis.globals.AGlobals;
-import atlantis.utils.AHashMap;
-import atlantis.utils.AMath;
-import atlantis.utils.A4Vector;
-
-/**
- * Reconstructed Tau Jet
- */
-public class ATauJetData extends AAODData
-{
- // Note: This is a hierarchy list ! I.e. TauCutTight is assumed to have passed
- // all other criteria as well. This is strictly not completely correct but
- // good enough for Atlantis purposes.
- private enum isTau { TauCutTight, TauCutMedium, TauCutLoose, TauLlhTight, TauLlhMedium, TauLlhLoose, none }
-
- private float[] charge;
- private int[] integerCharge;
- private int[] numTracks;
- private float[] isolFrac;
- private float[] logLhRatio;
- private String[] label;
- private Vector<Enum> isTauEnum = new Vector<Enum>();
-
- ATauJetData(AHashMap p, AEvent e)
- {
- super(p,e);
- charge=p.getFloatArray("charge");
- integerCharge = new int[charge.length];
-
- // The recommended default cut for Tau charge is to equal to 1/-1,
- // but the cut for float value has no "=" operator in the
- // implementation, so change float[] to int[] to make it possible
- // to use "=".
- for(int i=0; i<charge.length; ++i)
- {
- integerCharge[i] = (int) charge[i];
- }
- numTracks=p.getUnknownIntArray("numTracks");
- isolFrac=p.getUnsureFloatArray("isolFrac");
- logLhRatio=p.getUnsureFloatArray("logLhRatio");
- label=p.getUnsureStringArray("label");
- String[] isTauString=p.getUnsureStringArray("isTauString");
-
- if(isTauString!=null){
- for(String s : isTauString)
- {
- try {
- isTauEnum.add(isTau.valueOf(s));
- }
- catch(IllegalArgumentException q) {
- isTauEnum.add(isTau.none);
- }
- }
- }
- else
- {
- for(int i=0;i<numData;i++)
- {
- isTauEnum.add(isTau.none);
- }
- }
- }
-
- public String getParameterGroup()
- {
- return "TauJet";
- }
-
- public String getName()
- {
- return "TauJet";
- }
-
- public float getCharge(int index)
- {
- return charge[index];
- }
-
- public int getNumTracks(int index)
- {
- return numTracks[index];
- }
-
- public float getIsolFrac(int index)
- {
- if(isolFrac != null) return isolFrac[index];
- else return -100;
- }
-
- public float getLogLhRatio(int index)
- {
- if(logLhRatio != null) return logLhRatio[index];
- else return -100;
- }
-
- public String getisTau(int index)
- {
- return isTauEnum.get(index).toString();
- }
-
- public A4Vector get4Vector(int num, int[] list)
- {
- A4Vector sum = new A4Vector();
- for (int i = 0; i < num; ++i)
- {
- int k = list[i];
- A4Vector start = new A4Vector();
- start.setPtEtaPhiM(pT[k],eta[k],phi[k],1.77682);
- sum.add(start);
- }
-
- return sum;
- }
-
- protected void applyCuts()
- {
- super.applyCuts();
- cut("CutsObjects", "TauJetPt", " |ET|", pT);
- cut("CutsObjects", "TauJetCharge", " |Charge|", integerCharge);
- cut("CutsObjects", "TauJetNumTracks", " |NumTracks|", numTracks);
- if(isolFrac != null)
- cut("CutsObjects", "TauJetisolFrac", " isolFrac", isolFrac);
- if(logLhRatio != null)
- cut("CutsObjects", "TauJetlogLhRatio", " logLhRatio", logLhRatio);
-
- if (parameterStore.get("CutsObjects", "TauJetisTauString").getStatus())
- {
- int cutSub = parameterStore.get("CutsObjects", "TauJetisTauString").getI();
- cutArrayEnum(isTauEnum, cutSub, "TauJet isTauString");
- }
- }
-
- public String getHitInfo(int index)
- {
- int simpleOutput = AGlobals.instance().getSimpleOutput();
- if(simpleOutput>0){
- String output = getNameScreenName()+" index: " + index;
- if(simpleOutput==1 || simpleOutput==3)
- output+= "\n PT="+String.format("%.3f",pT[index])+" GeV\n "+
- AMath.ETA+" = "+String.format("%.3f",eta[index])+"\n "+
- AMath.PHI+" = "+String.format("%.3f",Math.toDegrees(phi[index]))+AMath.DEGREES;
- if(simpleOutput==2 || simpleOutput==3)
- output+= "\n Px="+String.format("%.3f",pT[index]*Math.cos(phi[index]))+" GeV "+
- "\n Py="+String.format("%.3f",pT[index]*Math.sin(phi[index]))+" GeV "+
- "\n Pz="+String.format("%.3f",pT[index]*Math.sinh(eta[index]))+" GeV ";
- return output;
- }
-
- String k = this.getStoreGateKey();
- String sgKey = k != null ? k : "n/a";
- StringBuffer msg = new StringBuffer(getNameScreenName());
- msg.append(" (id: " + id[index] + " index: " + index + ")");
- msg.append("\n storegate key: ");
- msg.append(sgKey);
- msg.append("\n PT = ");
- msg.append(String.format("%.3f",pT[index]));
- msg.append(" GeV\n P = ");
- msg.append(String.format("%.3f",Math.abs(pT[index]/Math.cos(AMath.lambda(eta[index])))));
- msg.append(" GeV\n Charge = ");
- msg.append(integerCharge[index]);
- msg.append("\n ");
- msg.append(AMath.ETA);
- msg.append(" = ");
- msg.append(String.format("%.3f",eta[index]));
- msg.append("\n ");
- msg.append(AMath.PHI);
- msg.append(" = ");
- msg.append(String.format("%.3f",Math.toDegrees(phi[index])));
- msg.append(AMath.DEGREES);
- msg.append(" (" + String.format("%.3f",phi[index]) + " rad)");
- msg.append("\n numTracks = ");
- msg.append(numTracks[index]);
-
- if (label != null)
- {
- msg.append("\n label = ");
- msg.append(label[index]);
- }
- if (isolFrac != null)
- {
- msg.append("\n isolFrac = ");
- msg.append(isolFrac[index]);
- }
- if (logLhRatio != null)
- {
- msg.append("\n logLhRatio = ");
- msg.append(logLhRatio[index]);
- }
-
- return msg.toString();
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/data/ATrackData.java b/graphics/AtlantisJava/src/atlantis/data/ATrackData.java
deleted file mode 100644
index bc680fdd7b1..00000000000
--- a/graphics/AtlantisJava/src/atlantis/data/ATrackData.java
+++ /dev/null
@@ -1,1389 +0,0 @@
-package atlantis.data;
-
-import atlantis.event.*;
-import atlantis.canvas.ACanvas;
-import atlantis.utils.AMath;
-import atlantis.utils.AHashMap;
-import atlantis.utils.AAtlantisException;
-import atlantis.output.ALogInterface;
-import atlantis.output.AOutput;
-import atlantis.parameters.AParameterUtilities;
-import atlantis.globals.AGlobals;
-import atlantis.graphics.ACoord;
-import atlantis.projection.AProjectionXZ;
-import atlantis.graphics.AGraphics;
-import atlantis.canvas.AWindow;
-import atlantis.parameters.APar;
-import atlantis.parameters.AParameter;
-import atlantis.projection.AProjection;
-import atlantis.projection.AProjection2D;
-import atlantis.projection.AProjection3D;
-import atlantis.projection.AProjectionFR;
-import atlantis.projection.AProjectionFZ;
-import atlantis.projection.AProjectionLegoPlot;
-import atlantis.projection.AProjectionPhi;
-import atlantis.projection.AProjectionRZ;
-import atlantis.projection.AProjectionVP;
-import atlantis.projection.AProjectionYX;
-import atlantis.projection.AProjectionYZ;
-import atlantis.projection.AProjectionsManager;
-import atlantis.utils.A4Vector;
-import atlantis.utils.ALogger;
-
-/**
- *
- * base class for ASTrData - Simulated Track
- * AInDetTrackData - Reconstructed Inner Detector Track
- * AMuonTrackData - Reconstructed Muon Detector Track
- *
- */
-public abstract class ATrackData extends AData
-{
- private static final ALogger logger = ALogger.getLogger(ATrackData.class);
-
- public static final int DRAW_HELIX = 0;
- public static final int DRAW_POLYLINE = 1;
- public static final int DRAW_SMOOTH = 2;
- public static final int DRAW_NEWHELIX = 3;
- public static final int ADD_HELIX_POINTS = 0;
-
- /** True if track residual is available */
- private boolean hasResidual = false;
-
- protected ATrackResidualData[] residuals = null;
-
- /** True if reconstructed track event data contains polyline information */
- protected boolean polylinedTrack = false;
-
- // these attributes are used to store polyline coordinates of tracks
- protected float x[][] = null;
- protected float y[][] = null;
- protected float z[][] = null;
- protected float rho[][] = null;
- protected float phi[][] = null;
-
- protected int numHelix[] = null;
- protected boolean cosmic[] = null;
-
- protected AHelix[] h = null;
-
- /**
- * rhoVertex value - for STr provided in the event file, for reconstructed
- * track (Track) it is calculated from first polyline coordinates.
- * This value is tested in cutRhoVertexAfterInDetRadius() method.
- */
- protected float[] rhoVertex = null;
-
- protected int[] index = null;
-
- protected float chi2[] = null;
- protected int numDoF[] = null;
- private int[] vertexType = null;
-
- // methods --------------------------------------------------------------
-
- ATrackData(AHashMap p, AEvent e) throws AAtlantisException
- {
- super(p,e);
-
- String assocKey = getName() + getStoreGateKey();
- if (p.get("barcode") != null)
- {
- int[] barcode = p.getUnknownIntArray("barcode");
- AAssociation assoc = new AAssociation(assocKey, "STr", null, barcode, event);
- event.getAssociationManager().add(assoc);
- }
- //Get vertex type numbers
- vertexType = p.getUnsureIntArray("vertexType");
- // if residual information is provided, second check is a workaround for a JiveXML bug -- EJ
- if(p.get("numTsos")!=null && p.get("tsosPullLoc1")!=null)
- {
- hasResidual = true;
- residuals = new ATrackResidualData[numData];
- int[] numTsos = p.getIntArray("numTsos");
- float[] tsosPullLoc1 = p.getFloatArray("tsosPullLoc1");
- float[] tsosResLoc1 = p.getFloatArray("tsosResLoc1");
- float[] tsosPullLoc2 = p.getFloatArray("tsosPullLoc2");
- float[] tsosResLoc2 = p.getFloatArray("tsosResLoc2");
- String[] tsosDetType = p.getUnsureStringArray("tsosDetType");
-
- int num = 0;
- for(int i=0; i<numData; i++)
- {
- int numPoints = numTsos[i];
- float[] pullLoc1 = new float[numPoints];
- float[] resLoc1 = new float[numPoints];
- float[] pullLoc2 = new float[numPoints];
- float[] resLoc2 = new float[numPoints];
- String[] detType = null;
- if(tsosDetType != null)
- detType = new String[numPoints];
-
- for(int j=0; j<numPoints; j++)
- {
- pullLoc1[j] = tsosPullLoc1[num];
- resLoc1[j] = tsosResLoc1[num];
- pullLoc2[j] = tsosPullLoc2[num];
- resLoc2[j] = tsosResLoc2[num];
- if(tsosDetType != null)
- detType[j] = tsosDetType[num];
- num++;
- }
- residuals[i] = new ATrackResidualData(this, i, numPoints, pullLoc1,
- resLoc1, pullLoc2, resLoc2, detType);
- }
- }
-
- // helix may come in different formats:
- // * helix track from reconstructed track ?
- if (p.get("d0") != null)
- {
- h = new AHelix[numData];
-
- float[] d0 = p.getFloatArray("d0");
- float[] phi0 = p.getFloatArray("phi0");
- float[] tl = p.getFloatArray("cotTheta");
- float[] pt = p.getFloatArray("pt");
- float[] z0 = p.getFloatArray("z0");
-
- // this patch is useful when reading old event files generated by
- // some older version of JiveXML, in which cotTheta is set to inf by
- // error when eta equals to 0 for IDScan Tracks
- if ("TrigInDetTrack".equals((String) p.get("storeGateKey")))
- {
- for(int i = 0; i < tl.length; i++)
- {
- if(Float.isInfinite(tl[i]))
- tl[i] = 0.0f;
- }
- } // end of the patch
-
- // 2005-11-16 - numbers in event file in covMatrix too small, a lot
- // of them were 0.00000 hence multiplied by 10000 in JiveXML and
- // divided here by 10000. only Vertex fitter affected, didn't work
- // before anyway, so numbers are divided for all events
- if (p.get("covMatrix") != null)
- {
- float[][][] cov = new float[numData][5][5];
- float[] covMatrix = p.getFloatArray("covMatrix");
- // dividing numbers
- for (int i = 0; i < covMatrix.length; i++)
- {
- covMatrix[i] = covMatrix[i] / 10000;
- }
-
- int n = 0;
- for (int i = 0; i < numData; i++)
- {
- for (int j = 0; j < 5; j++)
- {
- for (int k = 0; k < j + 1; k++)
- {
- cov[i][j][k] = covMatrix[n++];
- cov[i][k][j] = cov[i][j][k];
- }
- }
-
- h[i] = new AHelix(d0[i], z0[i], (float) Math.toDegrees(phi0[i]), tl[i], pt[i], cov[i]);
- }
- }
- else
- {
- for (int i = 0; i < numData; i++) {
- h[i] = new AHelix(d0[i], z0[i], (float) Math.toDegrees(phi0[i]), tl[i], pt[i]);
- }
- }
- }
- // * helix track from simulated charged tracks ?
- else if (p.get("rhoVertex") != null)
- {
- h = new AHelix[numData];
-
- // STr - save rhoVertex value for tests
- rhoVertex = p.getFloatArray("rhoVertex");
- float[] rhoEndVertex = p.getFloatArray("rhoEndVertex");
- float[] pt = p.getFloatArray("pt");
- float[] phi = p.getFloatArray("phi");
- float[] eta = p.getFloatArray("eta");
- float[] phiVertex = p.getFloatArray("phiVertex");
- float[] zVertex = p.getFloatArray("zVertex");
- // charge is calculated in ASTrData, based on code subtag
- // information and pdg.xml data
- int[] charge = p.getIntArray("charge");
- for (int i = 0; i < numData; i++)
- {
- //Create helix w/ end vertex information if rhoEndVertex is set
- if ( rhoEndVertex[i] != 0.0 )
- h[i] = new AHelix(rhoVertex[i], phiVertex[i], zVertex[i], pt[i],
- (float)Math.toDegrees(phi[i]), eta[i], charge[i], rhoEndVertex[i]);
- //Otherwise create helix w/o end vertex information
- else
- h[i] = new AHelix(rhoVertex[i], phiVertex[i], zVertex[i], pt[i],
- (float)Math.toDegrees(phi[i]), eta[i], charge[i] );
- }
- }
-
- // if polyline information is provided for tracks
- if(p.get("numPolyline") != null)
- {
- int[] numPolyline = p.getIntArray("numPolyline");
-
- boolean hasPolyline = false;
- for (int i=0; i<numData; i++) {
- if (numPolyline[i] > 0) {
- hasPolyline = true;
- break;
- }
- }
-
- if (hasPolyline) {
- polylinedTrack = true;
- x = new float[numData][];
- y = new float[numData][];
- z = new float[numData][];
- rho = new float[numData][];
- phi = new float[numData][];
- rhoVertex = new float[numData];
- numHelix = new int[numData];
- cosmic = new boolean[numData];
-
- float[] polyX = p.getFloatArray("polylineX");
- float[] polyY = p.getFloatArray("polylineY");
- float[] polyZ = p.getFloatArray("polylineZ");
- int num = 0;
-
- for(int i = 0; i < numData; ++i)
- {
- numHelix[i] = 0;
- cosmic[i] = false;
-
- // Do some checks on the track, decide what drawing we enable/disable for it.
- if (numPolyline[i] >= 2) {
- int first = num;
- int next = num+1;
-
- // Find the next different point on the track.
- while (next < numPolyline[i]-1 && polyX[next]==polyX[first] && polyY[next]==polyY[first]) next++;
-
- // Determine what direction the track has in rho and z.
- float rStart = (float)Math.sqrt(polyX[first]*polyX[first] + polyY[first]*polyY[first]);
- float rDir = (float)Math.sqrt(polyX[next]*polyX[next] + polyY[next]*polyY[next]) - rStart;
- float zDir = Math.abs(polyZ[next]) - Math.abs(polyZ[first]);
-
- // Now in order to extrapolate to the IP we the track to:
- // - go radially outwards
- // - go away from the IP in z
- // - have perigee parameters
- // - have its first polyline point some distance from the perigee
- // - be an InDetTrack
- if (rDir > 0 && zDir > 0 && h != null && h[i] != null && rStart-Math.abs(h[i].d0()) > 1
- && this instanceof AInDetTrackData) {
- numHelix[i] = ADD_HELIX_POINTS;
- }
-
- // Check if this is perhaps a cosmic. Cosmics are allowed
- // to be drawn on both sides in the rho-z projection
- if (rDir < 0) {
- cosmic[i] = true;
- }
- } else if (h != null && h[i] != null && this instanceof AInDetTrackData) {
-
- // In case of a track with only perigee parameters, draw it also as a helix.
- numHelix[i] = ADD_HELIX_POINTS;
- }
-
- x[i] = new float[numPolyline[i]+numHelix[i]];
- y[i] = new float[numPolyline[i]+numHelix[i]];
- z[i] = new float[numPolyline[i]+numHelix[i]];
- rho[i] = new float[numPolyline[i]+numHelix[i]];
- phi[i] = new float[numPolyline[i]+numHelix[i]];
-
- for(int j = 0; j < numPolyline[i]; ++j)
- {
- x[i][j+numHelix[i]] = polyX[num];
- y[i][j+numHelix[i]] = polyY[num];
- z[i][j+numHelix[i]] = polyZ[num];
- rho[i][j+numHelix[i]] = (float)Math.sqrt(polyX[num]*polyX[num]+polyY[num]*polyY[num]);
- num++;
-
- if(j == 0)
- {
- // first coordinate of a track - calculate rhoVertex
- rhoVertex[i] = (float) Math.sqrt( x[i][numHelix[i]] * x[i][numHelix[i]] +
- y[i][numHelix[i]] * y[i][numHelix[i]] );
- }
- }
-
- if (h != null && h[i] != null) {
- h[i].setPoints(x[i], y[i], z[i], numPolyline[i]);
- }
-
- // When perigee parameters are available we extend the track all the way down to the IP
- if (numHelix[i] > 0) {
- // Radius of curvature of this track in the magnetic field
- double R = parameterStore.get("Event", "Curvature").getD() * Math.abs(h[i].pT());
-
- // +1/-1 for a clockwise/anti-clockwise helix
- double S = AMath.getSign(h[i].pT());
-
- // Coordinates of the center point for the helix
- double xC = (S * h[i].d0() - R) * Math.cos(Math.toRadians(h[i].phi0()) + S * Math.PI / 2.);
- double yC = (S * h[i].d0() - R) * Math.sin(Math.toRadians(h[i].phi0()) + S * Math.PI / 2.);
-
- // Determine to what radius we have to draw this track based on its
- // perigee parameters. When space points are available for the track
- // we stop before the first space point and make a smooth connection.
- // If no space points are available we draw all the way through the
- // inner detector. Not any further though, because the track will stop
- // curving when it leaves the magnetic field.
- double Rmax;
- if (numPolyline[i] > 0) {
- Rmax = Math.min(parameterStore.get("RTr", "RadiusTr").getD(),
- Math.abs(Math.sqrt(x[i][numHelix[i]]*x[i][numHelix[i]]
- + y[i][numHelix[i]]*y[i][numHelix[i]]) - 1));
- } else {
- Rmax = parameterStore.get("RTr", "RadiusTr").getD();
- }
-
- // Calculate the phi value at which our helix intersects the maximum
- // radius determined above. We have one circle (detector) centered at
- // the origin with radius Rmax. The other circle (helix) we imagine to
- // be at x=d with a radius R. Now we can easily calculate the coordinates
- // (xI,+/-yI) of the intersection points. The curving direction of the
- // helix determines which value of yI we have to use. Finally, the phiMax
- // we're interested in is the polar angle with respect to the center of the
- // helix at x=d. Calculation is straightforward. By adding phi0+S*PI/2
- // (as we do below) this solution is also valid for helices centered
- // around y!=0.
- double d = Math.sqrt(xC * xC + yC * yC);
- double xI = (Rmax * Rmax - R * R + d * d) / (2 * d);
- double yI = Math.sqrt(Rmax * Rmax - xI * xI);
- double phiMax = Math.atan2(S * yI, d - xI);
-
- // This spreads the number of helix points evenly across the part of the
- // helix we're going to draw
- double dphi = phiMax / numHelix[i];
-
- for (int j=0; j<numHelix[i]; j++) {
- // Points on the helix in user coordinates
- x[i][j] = (float) (xC + R * Math.cos(Math.toRadians(h[i].phi0()) + S * Math.PI/2. - j * dphi));
- y[i][j] = (float) (yC + R * Math.sin(Math.toRadians(h[i].phi0()) + S * Math.PI/2. - j * dphi));
-
- // In R-Z the track is just a straight line
- rho[i][j] = (float) Math.sqrt(x[i][j]*x[i][j] + y[i][j]*y[i][j]);
- z[i][j] = (float) (h[i].z0() + h[i].cotanTheta() * (rho[i][j] - h[i].d0()));
- }
- }
-
- for (int j=0; j<numPolyline[i]+numHelix[i]; j++) {
- phi[i][j] = (float)Math.atan2(y[i][j], x[i][j]);
-
- if (j>0 && Math.abs(phi[i][j-1]-phi[i][j]) > Math.PI) {
-
- // Don't let phi wrap around
- if (phi[i][j] > phi[i][j-1]) {
- phi[i][j] -= 2*Math.PI;
- } else {
- phi[i][j] += 2*Math.PI;
- }
- }
- }
- }
- }
- } // if(p.get("numPolyline")
-
- if (h != null)
- {
- double[] phi = new double[numData];
- for (int i = 0; i < numData; i++)
- phi[i] = h[i].phi0();
- index = indexBy(phi);
- }
- else if(x != null && y != null)
- {
- double[] phi = new double[numData];
- for(int i = 0; i < numData; i++)
- {
- // if number of polylines for a track is 0 - Atlantis used
- // to crash here with IndexOutOfBoundException
- // check to avoid crashes with old events, from some point
- // JiveXML doesn't output tracks with number of polylines
- // coordinates less then 2
- if(x[i].length > 0 && y[i].length > 0)
- {
- phi[i] = Math.toDegrees(Math.atan2(y[i][0], x[i][0]));
- }
- else
- {
- String m = getName() + ":" + getStoreGateKey() +
- " datatype rejected\n" +
- "(no polyline coordinates).";
- throw new AAtlantisException(m, false); // non fatal
- }
- }
- index = indexBy(phi);
- }
-
- if (p.get("chi2") != null) chi2 = p.getFloatArray("chi2");
- if (p.get("numDoF") != null) numDoF = p.getIntArray("numDoF");
- } // ATrackData() -------------------------------------------------------
-
-
- public float[][] getX()
- {
- return x;
- }
-
- public float[][] getY()
- {
- return y;
- }
-
- public float[][] getZ()
- {
- return z;
- }
-
- public float[][] getRho()
- {
- return rho;
- }
-
- public float[][] getPhi()
- {
- return phi;
- }
-
- public boolean getResidualStatus()
- {
- return hasResidual;
- }
-
- public ATrackResidualData getTrackResidual(int index)
- {
- return residuals[index];
- }
-
- // moved from the former iPatData class where it was without the condition
- protected void calculateRhoPhi()
- {
- if(!polylinedTrack) {
- super.calculateRhoPhi();
- }
- } // calculateRhoPhi() --------------------------------------------------
-
-
-
- protected void applyCuts()
- {
- cutIndex();
- if (h != null)
- {
- cut("CutsInDet", "z0-zVtx", " |z0-zVtx|", getZ0Primary());
- cut("CutsInDet", "z0", " |z0|", getZ0());
- cut("CutsInDet", "Pt", " |Pt|", getPt());
- cut("CutsInDet", "d0", " |d0|", getD0());
- cut("CutsInDet", "d0Loose", " |d0Loose|", getD0());
- }
- cutPhi();
- cutEta();
- cutNextInDrawList();
- cutReconstructedVertex();
- } // applyCuts() --------------------------------------------------------
-
-
-
- public String getHitInfo(int index)
- {
- int simpleOutput = AGlobals.instance().getSimpleOutput();
- if(simpleOutput>0) return getNameScreenName()+" index: " + index+
- ((h!=null)?h[index].toString():"");
-
-
- String msg = getNameScreenName() + " (id: " + id[index] + " index: " + index + ")";
- msg += "\n storegate key: ";
- msg += (storeGateKey == null ? "n/a" : storeGateKey);
- if (h != null)
- msg += h[index].toString();
- if (chi2 != null && numDoF != null)
- msg += "\n chi2/numDoF = " + chi2[index]/numDoF[index];
- return msg;
-
- } // getHitInfo() -------------------------------------------------------
-
-
- // all get**User() methods which are only called when tracks are drawn
- // as polylines
- protected ACoord getYXUser()
- {
- makeDrawList();
- double[][][] hv = new double[2][numDraw][];
- int[] index = new int[numDraw];
- for(int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
- int numPoints = x[list].length;
- hv[0][i] = new double[numPoints];
- hv[1][i] = new double[numPoints];
- for(int j = 0; j < numPoints; j++)
- {
- hv[0][i][j] = x[list][j];
- hv[1][i][j] = y[list][j];
- }
- index[i] = list;
- }
-
- if (parameterStore.get(PARAMETER_GROUP, "DrawnAs").getI() == DRAW_SMOOTH)
- return new ACoord(hv, index, this, ACoord.SMOOTH_POLYLINES);
- else
- return new ACoord(hv, index, this, ACoord.POLYLINES);
-
- } // getYXUser() --------------------------------------------------------
-
-
-
- protected ACoord getFRUser()
- {
- makeDrawList();
- double[][][] hv = new double[2][numDraw][];
- int[] index = new int[numDraw];
- for(int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
- int numPoints = x[list].length;
- int skip = 0;
-
- // Skip points with very small R, phi changes rapidly here
- for (skip=0; skip<numPoints; skip++)
- if (rho[list][skip] > 2.) break;
-
- hv[0][i] = new double[numPoints-skip];
- hv[1][i] = new double[numPoints-skip];
-
- double phiStart = 0.;
- if(numPoints > 0) phiStart = phi[list][0];
- for(int j = skip; j < numPoints; j++)
- {
- double phiTemp = phi[list][j];
- if(phiTemp - phiStart > Math.PI) phiTemp -= AMath.TWO_PI;
- if(phiTemp - phiStart < -Math.PI) phiTemp += AMath.TWO_PI;
-
- hv[0][i][j-skip] = rho[list][j];
- hv[1][i][j-skip] = Math.toDegrees(phiTemp);
- }
- index[i] = list;
- }
-
- if (parameterStore.get(PARAMETER_GROUP, "DrawnAs").getI() == DRAW_SMOOTH)
- return new ACoord(hv, index, this, ACoord.SMOOTH_POLYLINES).includePhiWrapAround("FR");
- else
- return new ACoord(hv, index, this, ACoord.POLYLINES).includePhiWrapAround("FR");
-
- } // getFRUser() --------------------------------------------------------
-
-
-
- protected ACoord getFZUser()
- {
- makeDrawList();
- double[][][] hv = new double[2][numDraw][];
- int[] index = new int[numDraw];
- for(int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
- int numPoints = x[list].length;
- int skip = 0;
-
- // Skip points with very small R, phi changes rapidly here
- for (skip=0; skip<numPoints; skip++)
- if (rho[list][skip] > 2.) break;
-
- hv[0][i] = new double[numPoints-skip];
- hv[1][i] = new double[numPoints-skip];
- // treat phi wraparound
- double phiStart = 0.;
- if(numPoints > 0) phiStart = phi[list][0];
- for(int j = skip; j < numPoints; j++)
- {
- hv[0][i][j-skip] = z[list][j];
- double phiTemp = phi[list][j];
- if(phiTemp - phiStart > Math.PI) phiTemp -= AMath.TWO_PI;
- if(phiTemp - phiStart < -Math.PI) phiTemp += AMath.TWO_PI;
- hv[1][i][j-skip] = Math.toDegrees(phiTemp);
- }
- index[i] = list;
- }
-
- if (parameterStore.get(PARAMETER_GROUP, "DrawnAs").getI() == DRAW_SMOOTH)
- return new ACoord(hv, index, this, ACoord.SMOOTH_POLYLINES).includePhiWrapAround("FZ");
- else
- return new ACoord(hv, index, this, ACoord.POLYLINES).includePhiWrapAround("FZ");
-
- } // getFZUser() --------------------------------------------------------
-
-
-
- protected ACoord getRZUser()
- {
- // not quite correct need to split tracks crossing phi boundary
- makeDrawList();
- double[][][] hv = new double[2][numDraw][];
- int[] index = new int[numDraw];
- for(int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
- int numPoints = rho[list].length;
- hv[0][i] = new double[numPoints];
- hv[1][i] = new double[numPoints];
-
- if (numPoints > 0) {
- int sign = AParameterUtilities.getRhoSign(x[list][numPoints-1], y[list][numPoints-1]);
- for(int j = 0; j < numPoints; j++)
- {
- if (cosmic != null && cosmic[i]) {
- sign = AParameterUtilities.getRhoSign(x[list][j], y[list][j]);
- }
- hv[0][i][j] = z[list][j];
- hv[1][i][j] = rho[list][j] * sign;
- }
- }
- index[i] = list;
- }
-
- if (parameterStore.get(PARAMETER_GROUP, "DrawnAs").getI() == DRAW_SMOOTH)
- return new ACoord(hv, index, this, ACoord.SMOOTH_POLYLINES);
- else
- return new ACoord(hv, index, this, ACoord.POLYLINES);
-
- } // getRZUser() --------------------------------------------------------
-
-
-
- protected ACoord getXZUser()
- {
- makeDrawList();
- double[][][] hv = new double[2][numDraw][];
- int[] index = new int[numDraw];
- double phi0 = Math.toRadians(AProjectionXZ.getPhi());
- for(int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
- int numPoints = rho[list].length;
- hv[0][i] = new double[numPoints];
- hv[1][i] = new double[numPoints];
- for(int j = 0; j < numPoints; j++)
- {
- hv[0][i][j] = z[list][j];
- hv[1][i][j] = rho[list][j] * Math.cos(phi[list][j] - phi0);
- }
- index[i] = list;
- }
-
- if (parameterStore.get(PARAMETER_GROUP, "DrawnAs").getI() == DRAW_SMOOTH)
- return new ACoord(hv, index, this, ACoord.SMOOTH_POLYLINES);
- else
- return new ACoord(hv, index, this, ACoord.POLYLINES);
-
- } // getXZUser() --------------------------------------------------------
-
- protected ACoord getYZUser()
- {
- makeDrawList();
- double[][][] hv = new double[2][numDraw][];
- int[] index = new int[numDraw];
- double phi0 = Math.toRadians(AProjectionXZ.getPhi());
- for(int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
- int numPoints = rho[list].length;
- hv[0][i] = new double[numPoints];
- hv[1][i] = new double[numPoints];
- for(int j = 0; j < numPoints; j++)
- {
- hv[0][i][j] = z[list][j];
- hv[1][i][j] = rho[list][j] * Math.sin(phi[list][j] - phi0);
- }
- index[i] = list;
- }
-
- if (parameterStore.get(PARAMETER_GROUP, "DrawnAs").getI() == DRAW_SMOOTH)
- return new ACoord(hv, index, this, ACoord.SMOOTH_POLYLINES);
- else
- return new ACoord(hv, index, this, ACoord.POLYLINES);
-
- } // getYZUser() --------------------------------------------------------
-
-
-
- public void draw(AWindow window, AGraphics ag, AProjection2D projection)
- {
- if(h != null && (projection instanceof AProjectionVP || projection instanceof AProjection3D))
- {
- // in VPlot only helices are drawn, so try to draw tracks as helices
- // in VPlot by default ignoring Track->DrawAs option for VPlot
- drawHelix(window, ag, projection);
- }
- else
- {
- AParameter drawPar = parameterStore.get(PARAMETER_GROUP, "DrawnAs");
- int drawnAs = drawPar != null ? drawPar.getI() : DRAW_HELIX;
- if (polylinedTrack && (h == null || drawnAs == DRAW_POLYLINE || drawnAs == DRAW_SMOOTH))
- {
- // draw as polyline
- ag.draw(window.calculateDisplay(getUser(projection)));
- }
- else if (h != null)
- {
- // draw as helix
- drawHelix(window, ag, projection);
- }
- }
-
- } // draw() -------------------------------------------------------------
-
- protected void cutRhoVertexAfterInDetRadius()
- {
- int num = 0;
- int wrong = 0;
- int list = 0;
- double rho = 108; // 1.08m
- double parRhoTr = parameterStore.get("RTr", "RadiusTr").getD();
- for(int i = 0; i < numDraw; i++)
- {
- list = listdl[i];
- if(this.rhoVertex[list] > Math.min(rho, parRhoTr))
- {
- wrong++;
- }
- else
- {
- // include into drawlist
- listdl[num++] = list;
- }
- }
-
- if(wrong > 0)
- {
- logger.debug("AHelix.cutRhoVertexAfterInDetRadius()");
- String key = this.getStoreGateKey();
- key = key != null ? ":" + key : "";
- logger.debug(" " + numDraw + " " + this.getName() + key +
- " before test, " + wrong + " removed\n");
- }
- numDraw = num;
- } // cutRhoVertexAfterInDetRadius() -------------------------------------
-
- protected int internalColor()
- {
- int colorFunction = parameterStore.get(PARAMETER_GROUP, "ColorFunction").getI();
-
- switch (colorFunction)
- {
- case 0:
- colorByConstant();
- break;
- case 1:
- colorByIndex(index);
- break;
- case 2:
- colorBy(getPt());
- break;
- case 3:
- colorByCollection();
- break;
- case 4:
- colorBy("STr");
- break;
- case 5:
- colorBy(getRVx());
- break;
- case 6:
- colorBy(getJets());
- break;
- case 7: // by objects
- colorByObjects();
- break;
- }
-
- return 7;
- }
-
- public int[] getDrawList()
- {
- int[] temp = new int[numDraw];
- System.arraycopy(listdl, 0, temp, 0, numDraw);
- return temp;
- }
-
- protected void cutNextInDrawList()
- {
- AParameter nextTrkPar = parameterStore.get(PARAMETER_GROUP, "NextTrack");
- if(!nextTrkPar.getStatus())
- {
- return;
- }
- if(numDraw == 0)
- {
- return;
- }
-
- int nextTrk = nextTrkPar.getI() % numData;
- int nextTrkIndex = nextTrk;
- boolean hasFound = false;
- while (!hasFound)
- {
- for (int i=0; i<numDraw; ++i)
- {
- if(listdl[i] == nextTrk)
- {
- nextTrkIndex = nextTrk;
- hasFound = true;
- }
- }
- if(!hasFound)
- nextTrk = (nextTrk + 1) % numData;
- }
- nextTrkPar.setI(nextTrkIndex);
- numDraw = 1;
- listdl[0] = nextTrkIndex;
- }
-
- protected void cutPhi()
- {
- AParameter par = parameterStore.get("CutsATLAS", "CutPhi");
- boolean usePhiCut = par.getStatus();
-
- if (usePhiCut)
- {
- // use degrees for tracks
- double phiCut = par.getD();
- double phiMid = AMath.nearestPhiDegrees(parameterStore.get("CutsATLAS", "PhiMiddle").getD());
- // use vplot as projection
- AProjection2D projection = (AProjection2D) AProjectionsManager.getProjection("VP");
-
- int num = 0;
- for (int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
- ADHelix dH = new ADHelix(h[list]);
- double s1 = dH.getAStart();
- double s2 = dH.getAEnd();
- s1 = dH.intersectWithRadialCylinder(projection.getMinRho(), s1, s2);
- double sEnd = dH.intersectWithCylinder(true, AProjectionVP.getRhoVPlot(), true, AProjectionVP.getZVPlot());
- s2 = Math.max(Math.min(s2, sEnd), s1);
-
- double phiDiffStart = Math.abs(AMath.nearestPhiDegrees(dH.getPhi(s1), phiMid) - phiMid);
- double phiDiffEnd = Math.abs(AMath.nearestPhiDegrees(dH.getPhi(s2), phiMid) - phiMid);
- double phiDiffMiddle = Math.abs(AMath.nearestPhiDegrees(dH.getPhi((s1 + s2) / 2), phiMid) - phiMid);
- // treats wrap around
- int numPointsInside = 0;
-
- if (phiDiffStart < phiCut)
- numPointsInside++;
- if (phiDiffMiddle < phiCut)
- numPointsInside++;
- if (phiDiffEnd < phiCut)
- numPointsInside++;
- if (numPointsInside > 1)
- listdl[num++] = list;
- }
- numDraw = num;
- }
- }
-
- /**
- * Cut tracks if connected/unconnected to reconstructed vertices.
- */
- protected void cutReconstructedVertex()
- {
- int cutOption = parameterStore.get("CutsObjects", "RTrsByRVtx").getI();
- cutByAssociationTo( "RVx", getReconstructedTracks(), cutOption);
- }
-
-
- protected void cutEta()
- {
- AParameter par = parameterStore.get("CutsATLAS", "CutEta");
-
- if (par.getStatus())
- {
- // use vplot as projection
- AProjection2D projection = (AProjection2D) AProjectionsManager.getProjection("VP");
-
- double etaCut = par.getD();
- double etaMid = parameterStore.get("CutsATLAS", "EtaMiddle").getD();
- double etaC1 = etaMid - etaCut;
- double etaC2 = etaMid + etaCut;
- int num = 0;
- for (int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
- ADHelix dH = new ADHelix(h[list]);
- double s1 = dH.getAStart();
- double s2 = dH.getAEnd();
- s1 = dH.intersectWithRadialCylinder(projection.getMinRho(), s1, s2);
- double sEnd = dH.intersectWithCylinder(true, AProjectionVP.getRhoVPlot(), true, AProjectionVP.getZVPlot());
- s2 = Math.max(Math.min(s2, sEnd), s1);
- double[] etaPoints = new double[] { dH.getEta(s1), dH.getEta((s1 + s2) / 2), dH.getEta(s2) };
-
- int numPointsInside = 0;
- for (int j = 0; j < etaPoints.length; ++j)
- if (etaC1 < etaPoints[j] && etaPoints[j] < etaC2)
- numPointsInside++;
- if (numPointsInside > 1)
- listdl[num++] = list;
- }
- numDraw = num;
- }
- }
-
- // does not work correctly if primary vertex is displaced in YX plane
- private float[] getZ0Primary()
- {
- double[] pVtx = event.getPrimaryVertex();
- float[] temp = new float[numData];
- double zVertex = pVtx[2];
- for (int i = 0; i < numDraw; i++)
- temp[listdl[i]] = (float) (h[listdl[i]].z0() - zVertex);
- return temp;
- }
-
- private float[] getZ0()
- {
- float[] temp = new float[numData];
- for (int i = 0; i < numDraw; i++)
- temp[listdl[i]] = (float) h[listdl[i]].z0();
- return temp;
- }
-
- protected float[] getPt()
- {
- float[] temp = new float[numData];
- for (int i = 0; i < numDraw; i++)
- temp[listdl[i]] = (float) h[listdl[i]].pT();
- return temp;
- }
-
-
- // d0 is calculated w.r.t. to XY position of the primary vertex
- private float[] getD0()
- {
- double[] pVtx = event.getPrimaryVertex();
- float[] temp = new float[numData];
- for (int i = 0; i < numDraw; i++)
- {
- double phi0 = Math.toRadians(h[listdl[i]].phi0());
-
- temp[listdl[i]] = (float) (-h[listdl[i]].d0() + pVtx[1] * Math.cos(phi0) - pVtx[0] * Math.sin(phi0));
-
- }
- return temp;
- }
-
-
- // give back Drawable helices
- public ADHelix[] getHelices()
- {
- makeDrawList();
- ADHelix[] tempList = new ADHelix[numDraw];
-
- for (int i = 0; i < numDraw; i++)
- if (h != null && h[listdl[i]] != null)
- {
- tempList[i] = new ADHelix(h[listdl[i]]);
- if (tempList[i].getAStart() == tempList[i].getAEnd())
- {
- tempList[i] = null;
- }
- }
- else
- tempList[i] = null;
- return tempList;
- }
-
- // used by vertex package when changing the position on the helix from which
- // to start drawing
- public AHelix getModifiableHelix(int i)
- {
- if (h != null)
- return h[i];
- else
- return null;
- }
-
- // info on tracks contained in vplot rubberband
- public String getVPHitInfo()
- {
- makeDrawList();
- if (numDraw == 0)
- return "";
- double sumP = 0.;
- double sumPt = 0.;
-
- for (int i = 0; i < numDraw; ++i)
- {
- sumPt += Math.abs(h[listdl[i]].pT());
- sumP += AMath.getPFromPttL(h[listdl[i]].pT(), h[listdl[i]].cotanTheta());
- }
-
- String msg = numDraw + " " + getFullName();
- msg += " sum(PT) = " + String.format("%.1f",sumPt) + " sum(P) = " + String.format("%.1f",sumP);
- return msg;
- }
-
- public A4Vector get4Vector(int num, int[] list)
- {
- A4Vector sum = new A4Vector();
- for (int i = 0; i < num; ++i) {
- if (h == null || h[list[i]] == null) continue;
- // Use the pion mass (~140 MeV) here
- sum.add(new A4Vector(h[list[i]].p(), 0.14));
- }
- return sum;
- }
-
- public A4Vector get4Vector(int num, int[] list, double mass)
- {
- A4Vector sum = new A4Vector();
- for (int i = 0; i < num; ++i) {
- if (h == null || h[list[i]] == null) continue;
- sum.add(new A4Vector(h[list[i]].p(), mass));
-
-
- }
- return sum;
- }
-
- public void zoomAroundTracks()
- {
- AWindow window = ACanvas.getCanvas().getCurrentWindow();
- AProjection projection = window.getProjection();
- if (projection instanceof AProjectionLegoPlot)
- {
- AOutput.append("Zoom Next Track unavailable for LegoPlot\n", ALogInterface.NORMAL);
- }
- else if (projection instanceof AProjection2D)
- {
- ACoord user;
- if (projection instanceof AProjectionVP)
- user = window.calculateUser(getVPDisplayHelices(window, (AProjection2D) projection));
- else if (polylinedTrack)
- user = getUser((AProjection2D) projection);
- else
- user = window.calculateUser(getDisplayHelices(window, (AProjection2D) projection));
- double[] min = new double[2];
- double[] max = new double[2];
- min[0] = min[1] = 100000.;
- max[0] = max[1] = -100000.;
- for (int i = 0; i < 2; ++i)
- for (int j = 0; j < user.hv[i].length; ++j)
- for (int k = 0; k < user.hv[i][j].length; ++k)
- {
- if (user.hv[i][j][k] < min[i])
- min[i] = user.hv[i][j][k];
- if (user.hv[i][j][k] > max[i])
- max[i] = user.hv[i][j][k];
- }
- // increase by 10% to improve appearence
- for (int i = 0; i < 2; ++i)
- {
- double diff = (max[i] - min[i]) / 2.;
- double middle = (max[i] + min[i]) / 2.;
- if (diff > 0.)
- {
- max[i] = middle + 1.1 * diff;
- min[i] = middle - 1.1 * diff;
- }
- }
- // ensure entire trt hits included
- if (projection instanceof AProjectionPhi)
- {
- min[1] -= 0.5;
- max[1] += 0.5;
- }
-
- if (max[0] - min[0] > 0 && max[1] - min[1] > 0)
- {
- window.setUserCorners(min[0], max[0], min[1], max[1]);
- }
- }
- }
-
- public void drawHelix(AWindow window, AGraphics ag, AProjection2D projection)
- {
- if (projection instanceof AProjectionVP)
- {
- // phi wrap around is done in user coordinates, so we convert to user coordinates,
- // do the phi wrap around and convert back to display coordinates
- ag.draw(window.calculateDisplay(window.calculateUser(
- getVPDisplayHelices(window, projection)).includePhiWrapAround(projection.getName())
- ));
- }
- else if (projection instanceof AProjectionRZ)
- {
- ag.draw(getRZDisplayHelices(window, projection));
- }
- else if (projection instanceof AProjectionPhi)
- {
- // phi wrap around in user coordinates, see above
- ag.draw(window.calculateDisplay(window.calculateUser(
- getDisplayHelices(window, projection)).includePhiWrapAround(projection.getName())
- ));
-
- }
- else
- {
- ag.draw(getDisplayHelices(window, projection));
- }
- }
-
- // treat discontinuity when RZ sign changes crossing the phi boundary
- private ACoord getRZDisplayHelices(AWindow window, AProjection2D projection)
- {
- ACoord display = getDisplayHelices(window, projection);
- ACoord user = projection.inverseNonLinearTransform(window.calculateUser(display));
-
- double[][] rho = user.hv[1];
-
- int extraTrackSegments = 0;
-
- for (int i = 0; i < rho.length; i++)
- for (int j = 1; j < rho[i].length - 2; j++)
- if (rho[i][j] * rho[i][j + 1] < 0. && Math.abs(rho[i][j]) > 2.)
- extraTrackSegments++;
-
- double hv[][][] = new double[2][rho.length + extraTrackSegments][];
- int index[] = new int[rho.length + extraTrackSegments];
-
- extraTrackSegments = 0;
- for (int i = 0; i < rho.length; i++)
- {
- int startOfSegment = 0;
- int endOfLastSegment = rho[i].length - 1;
-
- for (int j = 0; j < rho[i].length - 1; j++)
- if (rho[i][j] * rho[i][j + 1] < 0. && Math.abs(rho[i][j]) > 2.)
- {
- if (j == 0)
- {
- if (Math.abs(rho[i][0]) > 1.)
- startOfSegment = 1;
- }
- else if (j == rho[i].length - 2)
- endOfLastSegment = rho[i].length - 2;
- else
- {
- for (int k = 0; k < hv.length; ++k)
- {
- hv[k][i + extraTrackSegments] = new double[j + 1 - startOfSegment];
- System.arraycopy(user.hv[k][i], startOfSegment, hv[k][i + extraTrackSegments], 0, j + 1 - startOfSegment);
- }
- index[i + extraTrackSegments] = user.index[i];
- startOfSegment = j + 1;
- extraTrackSegments++;
- }
- }
- if (startOfSegment == 0 && endOfLastSegment == rho[i].length - 1)
- {
- for (int k = 0; k < hv.length; ++k)
- hv[k][i + extraTrackSegments] = user.hv[k][i];
- index[i + extraTrackSegments] = user.index[i];
- }
- else
- {
- for (int k = 0; k < hv.length; ++k)
- {
- hv[k][i + extraTrackSegments] = new double[endOfLastSegment - startOfSegment + 1];
- System.arraycopy(user.hv[k][i], startOfSegment, hv[k][i + extraTrackSegments], 0, endOfLastSegment - startOfSegment + 1);
- }
- index[i + extraTrackSegments] = user.index[i];
- }
- }
-
- rho = hv[1];
- for (int i = 0; i < rho.length; i++)
- {
- int j = 0;
-
- while (j < rho[i].length && Math.abs(rho[i][j]) < 2.)
- j++;
- if (j < rho[i].length)
- if (rho[i][j] > 0.)
- for (int k = 0; k < j; k++)
- rho[i][k] = Math.abs(rho[i][k]);
- else
- for (int k = 0; k < j; k++)
- rho[i][k] = -Math.abs(rho[i][k]);
- }
-
- return window.calculateDisplay(projection.nonLinearTransform(new ACoord(hv, index, this, ACoord.POLYLINES)));
- }
-
- protected ACoord getDisplayHelices(AWindow window, AProjection2D projection)
- {
- AParameter drawPar = parameterStore.get(PARAMETER_GROUP, "DrawnAs");
- int drawnAs = drawPar != null ? drawPar.getI() : DRAW_HELIX;
-
- if (drawnAs == DRAW_HELIX) {
- ADHelix[] dhelix = getHelices();
- double[][][] hv = new double[2][dhelix.length][0];
- int[] index = getDrawList();
-
- for (int j = 0; j < dhelix.length; ++j) {
- if (dhelix[j] != null) {
- double s1 = dhelix[j].getAStart(); // Get start phi-angle
- double s2 = dhelix[j].getAEnd(); // Get end phi-angle
-
- // s1 becomes phi at the intersection of the minimal radius
- s1 = dhelix[j].intersectWithRadialCylinder(projection.getMinRho(), s1, s2); // minrho = 0
- // avoid drawing discontinuous in phi
- dhelix[j].setPhiStart(s1, s2);
- // returning a set of points to be drawn for this helix
- ACoord pointsOnHelix = dhelix[j].drawHelix(window, projection, s1, s2);
-
- hv[0][j] = pointsOnHelix.hv[0][0];
- hv[1][j] = pointsOnHelix.hv[1][0];
- }
- }
- return new ACoord(hv, index, this, ACoord.POLYLINES);
- } else { // DRAW_NEW_HELIX
-
- // V-plot needs some additional settings
- boolean showS3D = parameterStore.get("Data", "S3D").getStatus();
- AParameter shortV = parameterStore.get("VP", "ShortV");
-
- makeDrawList();
- double[][][] hv = new double[2][numDraw][];
- int[] index = new int[numDraw];
-
- for (int i=0; i<numDraw; i++) {
- int j = listdl[i];
- index[i] = j;
-
- if (projection instanceof AProjectionYX) {
-
- hv[0][i] = h[j].getX(h[j].getAlphaMin(), h[j].getAlphaMax());
- hv[1][i] = h[j].getY(h[j].getAlphaMin(), h[j].getAlphaMax());
-
- } else if (projection instanceof AProjectionRZ
- || projection instanceof AProjectionXZ
- || projection instanceof AProjectionYZ) {
-
- double alphaMin = h[j].getAlphaCylinder(projection.getMinRho(), AHelix.TRACKER_LENGTH);
- hv[0][i] = h[j].getZ(alphaMin, h[j].getAlphaMax());
- hv[1][i] = h[j].getRho(alphaMin, h[j].getAlphaMax(), true);
-
- if (projection instanceof AProjectionXZ || projection instanceof AProjectionYZ) {
- double phiC = AProjectionXZ.getPhi();
- if (projection instanceof AProjectionYZ) phiC += 90;
-
- double phi[] = h[j].getPhi(alphaMin, h[j].getAlphaMax(), false);
- for (int k=0; k<hv[1][i].length; k++) {
- hv[1][i][k] = Math.abs(hv[1][i][k]) * Math.cos(Math.toRadians(phi[k] - phiC));
- }
- }
- } else if (projection instanceof AProjectionFR) {
-
- double alphaMin = h[j].getAlphaCylinder(projection.getMinRho(), AHelix.TRACKER_LENGTH);
- hv[0][i] = h[j].getRho(alphaMin, h[j].getAlphaMax(), false);
- hv[1][i] = h[j].getPhi(alphaMin, h[j].getAlphaMax(), false);
-
- } else if (projection instanceof AProjectionFZ) {
-
- double alphaMin = h[j].getAlphaCylinder(projection.getMinRho(), AHelix.TRACKER_LENGTH);
- hv[0][i] = h[j].getZ(alphaMin, h[j].getAlphaMax());
- hv[1][i] = h[j].getPhi(alphaMin, h[j].getAlphaMax(), false);
-
- } else if (projection instanceof AProjectionVP) {
-
- double alphaMin = h[j].getAlphaCylinder(projection.getMinRho(), AHelix.TRACKER_LENGTH);
- double alphaMax = h[j].getAlphaExtrapolated(AProjectionVP.getRhoVPlot(), AHelix.TRACKER_LENGTH);
- if (shortV.getStatus() && !showS3D) {
- alphaMin = alphaMax - shortV.getD() * (alphaMax - alphaMin);
- }
-
- hv[0][i] = h[j].getEta(alphaMin, alphaMax);
- hv[1][i] = h[j].getPhi(alphaMin, alphaMax, true);
-
- }
- }
-
- return window.calculateDisplay(projection.nonLinearTransform(new ACoord(hv, index, this, ACoord.POLYLINES)));
- }
- }
-
- // a track has two arms in the VPlot
- protected ACoord getVPDisplayHelices(AWindow window, AProjection2D projection)
- {
- boolean drawApex = parameterStore.get("VP", "DrawApex").getStatus();
- AParameter drawPar = parameterStore.get(PARAMETER_GROUP, "DrawnAs");
- int drawnAs = drawPar != null ? drawPar.getI() : DRAW_HELIX;
-
- if (drawnAs == DRAW_HELIX) {
- ADHelix[] dhelix = getHelices();
- int size = 2 * dhelix.length;
- if (drawApex)
- size = 3 * dhelix.length;
- double[][][] hv = new double[2][size][0];
- int[] index = new int[size];
- int[] indexIn = getDrawList();
- int num = 0;
-
- for (int j = 0; j < dhelix.length; ++j)
- if (dhelix[j] != null)
- {
- double s1 = dhelix[j].getAStart();
- double s2 = dhelix[j].getAEnd();
-
- int mode = parameterStore.get("VP", "Mode").getI();
- if(mode <= AProjectionVP.MODE_HCAL_LAYER_3
- && mode >= AProjectionVP.MODE_ECAL_LAYER_0) {
- s2 = 179;
- }
-
- s1 = dhelix[j].intersectWithRadialCylinder(projection.getMinRho(), s1, s2);
- double sEnd = dhelix[j].intersectWithCylinder(true, AProjectionVP.getRhoVPlot(), true, AProjectionVP.getZVPlot());
-
- s2 = Math.max(Math.min(s2, sEnd), s1);
- // if the whole helix is to be drawn (which are unusual
- // helices, shorten it a little to avoid wraparound problems
- if (s1 == 0. && s2 == 180.)
- s2 = 179.;
- if (parameterStore.get("VP", "ShortV").getStatus() && !parameterStore.get("Data", "S3D").getStatus())
- s1 = s2 - parameterStore.get("VP", "ShortV").getD() * (s2 - s1);
- if (s2 > s1)
- {
- int signMin = -1;
- int signMax = 1;
- double h = 0;
- double v = 0;
- for (int sign = signMin; sign <= signMax; sign += 2)
- {
- // ugly must change structure at some point
- AProjectionVP.sign = sign;
- ACoord pointsOnHelix = dhelix[j].drawHelix(window, projection, s1, s2);
- hv[0][num] = pointsOnHelix.hv[0][0];
- hv[1][num] = pointsOnHelix.hv[1][0];
- index[num] = indexIn[j];
- h = hv[0][num][hv[0][num].length - 1];
- v = hv[1][num][hv[0][num].length - 1];
- num++;
- }
- if (drawApex)
- {
- int a = 3;
- int b = 7;
- hv[0][num] = new double[] { h - a, h + a, h, h, h - a, h + a };
- hv[1][num] = new double[] { v - b, v - b, v - b, v + b, v + b, v + b };
- index[num] = indexIn[j];
- num++;
- }
- }
- }
- return new ACoord(hv, index, this, ACoord.POLYLINES);
- } else { // DRAW_NEW_HELIX is handled by the normal method
- return getDisplayHelices(window, projection);
- }
- }
-}
-
diff --git a/graphics/AtlantisJava/src/atlantis/data/ATrackResidualData.java b/graphics/AtlantisJava/src/atlantis/data/ATrackResidualData.java
deleted file mode 100644
index 6f630c06636..00000000000
--- a/graphics/AtlantisJava/src/atlantis/data/ATrackResidualData.java
+++ /dev/null
@@ -1,323 +0,0 @@
-package atlantis.data;
-
-import java.awt.Color;
-import java.awt.Point;
-import java.awt.geom.Point2D;
-
-import atlantis.canvas.AWindow;
-import atlantis.globals.AGlobals;
-import atlantis.graphics.AGraphics;
-import atlantis.graphics.APickingGraphics2D;
-import atlantis.graphics.colormap.AColorMap;
-import atlantis.parameters.APar;
-import atlantis.parameters.AParameter;
-import atlantis.projection.AProjectionTrackResidual;
-
-/**
- * Contains residual data for a single track
- *
- * @author Qiang Lu
- */
-public class ATrackResidualData
-{
- public static String PULL_X = "P_X";
- public static String RESIDUAL_X = "R_X";
-
- private ATrackData track;
- private int trackIndex;
- private String showType = RESIDUAL_X;
- private int numPoints;
- private float[] pullLoc1;
- private float[] resLoc1;
- private float[] pullLoc2;
- private float[] resLoc2;
- private String[] detType;
-
- private double logMagnitudeMin;
- private int pickedIndex;
- private byte pickedGroup; // 1 for loc1/pull1, 2 for loc2/pull2
- private double minDiff;
-
- private static APar parameterStore = APar.instance();
-
- /**
- * @param theTrack track collection to which this residual belongs to
- * @param trackIndex index of the associated track
- * @param points number of residuals points
- * @param pullLoc1 residuals pull data 1
- * @param resLoc1 residuals data 1
- * @param pullLoc2 residuals pull data 2 (only for Pixel)
- * @param resLoc2 residuals data 2 (only for Pixel)
- * @param detType detector type of each residual
- */
- ATrackResidualData(ATrackData track, int trackIndex, int points,
- float[] pullLoc1, float[] resLoc1, float[] pullLoc2, float[] resLoc2,
- String[] detType)
- {
- this.track = track;
- this.trackIndex = trackIndex;
- numPoints = points;
- this.pullLoc1 = pullLoc1;
- this.resLoc1 = resLoc1;
- this.pullLoc2 = pullLoc2;
- this.resLoc2 = resLoc2;
- this.detType = detType;
- }
-
- /**
- * @return Returns the number of residual points.
- */
- public int getNumPoints()
- {
- return numPoints;
- }
-
- public float[] getPullLoc1()
- {
- return pullLoc1;
- }
-
- public float[] getResLoc1()
- {
- return resLoc1;
- }
-
- public float[] getPullLoc2()
- {
- return pullLoc2;
- }
-
- public float[] getResLoc2()
- {
- return resLoc2;
- }
-
- public void setLogMagnitudeMin(double logMagnitudeMin)
- {
- this.logMagnitudeMin = logMagnitudeMin;
- }
-
- public double getLogMagnitudeMin()
- {
- return logMagnitudeMin;
- }
-
- public void draw(AWindow window, AGraphics ag, AProjectionTrackResidual projection)
- {
- Color[] colorMap=AColorMap.getColors();
-
- // draw horizontal axis through 0
- double x1 = 0., y1 = 0., x2 = projection.getXLength(), y2 = 0.0;
- Point2D.Double from = window.calculateDisplay(x1, y1);
- Point2D.Double to = window.calculateDisplay(x2, y2);
- ag.setColor(colorMap[AColorMap.BL]);
- ag.drawLine(from.x, from.y, to.x, to.y);
-
- float[] temp1;
- AParameter showExtraPar = parameterStore.get("TrackResidual", "ShowExtra");
- if(projection.getResidualType().equals(RESIDUAL_X))
- {
- showType = RESIDUAL_X;
- temp1 = this.resLoc1;
- float[] temp2 = this.pullLoc1; // needed when drawing error bar
- drawResidual(window, ag, temp1, temp2, colorMap, false);
- if(showExtraPar.getStatus())
- {
- temp1 = this.resLoc2;
- temp2 = this.pullLoc2;
- drawResidual(window, ag, temp1, temp2, colorMap, true);
- }
- }
- else
- {
- showType = PULL_X;
- temp1 = this.pullLoc1;
- drawResidual(window, ag, temp1, null, colorMap, false);
- if(showExtraPar.getStatus())
- {
- temp1 = this.pullLoc2;
- drawResidual(window, ag, temp1, null, colorMap, true);
- }
- }
-
- if(ag.getGraphics2D() instanceof APickingGraphics2D
- && parameterStore.get("Event", "PickingMode").getI() == APickingGraphics2D.PICK_HITS_AND_TRACKS) // pick residula
- {
- APickingGraphics2D.mode = APickingGraphics2D.PICK_RESIDUAL;
- APickingGraphics2D.setPicked(this);
- }
- }
-
- public void drawResidual(AWindow window, AGraphics ag, float[] res,
- float[] pull, Color[] colorMap, boolean drawExtra)
- {
- // every residual is drawn as a small square with 2 pixels * 2 pixels
- // N.B. when showType=PULL_X, res actually represents pull, and pull=null
- double[] h = new double[4];
- double[] v = new double[4];
- int pixelOffset = 1;
-
- Point clickedPoint = null;
- if(ag.getGraphics2D() instanceof APickingGraphics2D
- && parameterStore.get("Event", "PickingMode").getI() == APickingGraphics2D.PICK_HITS_AND_TRACKS) // pick residual
- {
- clickedPoint = ((APickingGraphics2D)ag.getGraphics2D()).pickedPoint;
- }
-
- Color colValid = colorMap[AColorMap.RD]; //for backward compatibility
- Color colInvalid = colorMap[AColorMap.BK];
- for(int i=0; i<numPoints; i++)
- {
- double y;
- if(res[i] == -99.0f) // unavailable
- {
- ag.setColor(colInvalid);
- y = 0.0;
- }
- else
- {
- if(detType != null)
- {
- String det = detType[i];
- if("unident".equals(det))
- ag.setColor(colorMap[AColorMap.GY]);
- else
- {
- AParameter detColor = parameterStore.get("Det", det+"Fill");
- if(detColor != null)
- ag.setColor(colorMap[detColor.getI()]);
- else
- ag.setColor(colValid);
- }
- }
- else // for old files that don't have <tsosDetType>
- ag.setColor(colValid);
-
- if(parameterStore.get("TrackResidual", "Scale").getI() == 0) // linear
- y = res[i];
- else // logarithmic scale
- {
- if(res[i] != 0.0f)
- y = Math.log10(Math.abs(res[i])) - logMagnitudeMin;
- else
- y = res[i];
- if(res[i] < 0.0f)
- y = -y;
- }
- }
-
- double tempX, tempY;
- if(!drawExtra)
- tempX = window.calculateDisplay(i, y).x;
- else
- tempX = window.calculateDisplay(i+0.25, y).x;
- tempY = window.calculateDisplay(i, y).y;
-
- // when shape is a square, calculate the corners
- // x0, y0
- h[0] = tempX - pixelOffset;
- v[0] = tempY + pixelOffset;
- // x1, y1
- h[1] = tempX - pixelOffset;
- v[1] = tempY - pixelOffset;
- // x2, y2
- h[2] = tempX + pixelOffset;
- v[2] = tempY - pixelOffset;
- // x3, y3
- h[3] = tempX + pixelOffset;
- v[3] = tempY + pixelOffset;
-
- ag.fillPolygon(h, v, h.length);
-
- // draw error bar only for residual
- AParameter showErrorBarPar = parameterStore.get("TrackResidual", "ErrorBar");
- if(showType.equals(RESIDUAL_X) && showErrorBarPar.getStatus() &&
- pull != null)
- {
- double error = 0.0;
- if(pull[i] != 0.0f && pull[i] != -99.0f && y != 0.0)
- error = res[i] / pull[i];
-
- if(error != 0.0) // draw the error bar by linear scale always
- {
- double[][] vLine = new double[2][2];
- vLine[0][0] = tempX;
- vLine[0][1] = tempX;
- vLine[1][0] = window.calculateDisplay(i, y+error).y;
- vLine[1][1] = window.calculateDisplay(i, y-error).y;
- ag.drawPolyline(vLine[0], vLine[1], vLine[0].length); // verticle line
-
- double xMinus = tempX - 2 * pixelOffset;
- double xPlus = tempX + 2 * pixelOffset;
- double yTop = vLine[1][0];
- double yBottom = vLine[1][1];
- ag.drawLine(xMinus, yTop, xPlus, yTop);
- ag.drawLine(xMinus, yBottom, xPlus, yBottom);
- }
- }
-
- // find the picked residual
- if(ag.getGraphics2D() instanceof APickingGraphics2D
- && parameterStore.get("Event", "PickingMode").getI() == APickingGraphics2D.PICK_HITS_AND_TRACKS) // pick residula
- {
- if(i==0 && !drawExtra)
- {
- pickedIndex = i;
- pickedGroup = 1;
- minDiff = Math.abs(clickedPoint.x - tempX);
- APickingGraphics2D.pickedH = tempX;
- APickingGraphics2D.pickedV = tempY;
- }
- else
- {
- double diff = Math.abs(clickedPoint.x - tempX);
- if(minDiff > diff)
- {
- pickedIndex = i;
- if(drawExtra)
- pickedGroup = 2;
- else
- pickedGroup = 1;
- minDiff = diff;
- APickingGraphics2D.pickedH = tempX;
- APickingGraphics2D.pickedV = tempY;
- }
- }
- }
- }
- }
-
- public String getHitInfo()
- {
- int simpleOutput = AGlobals.instance().getSimpleOutput();
- if(simpleOutput>0) return track.getNameScreenName()+
- " index: "+trackIndex+"\n storegate key: "+
- (track.getStoreGateKey() == null ? "n/a" : track.getStoreGateKey());
-
- StringBuffer msg = new StringBuffer(track.getNameScreenName() + " (index: ");
- msg.append(trackIndex);
- msg.append(")");
- msg.append("\n storegate key: ");
- msg.append(track.getStoreGateKey() == null ? "n/a" : track.getStoreGateKey());
- if(showType.equals(RESIDUAL_X))
- {
- msg.append("\n Residual" + pickedGroup + "(" + "index: " + pickedIndex + ") = ");
- if (pickedGroup == 1)
- msg.append((this.resLoc1[pickedIndex]==-99.0f)?"unavailable":this.resLoc1[pickedIndex] + "(mm)");
- else
- msg.append((this.resLoc2[pickedIndex]==-99.0f)?"unavailable":this.resLoc2[pickedIndex] + "(mm)");
- }
- else
- {
- msg.append("\n Pull" + pickedGroup + "(" + "index: " + pickedIndex + ") = ");
- if (pickedGroup == 1)
- msg.append((this.pullLoc1[pickedIndex]==-99.0f)?"unavailable":this.pullLoc1[pickedIndex] + "(mm)");
- else
- msg.append((this.pullLoc2[pickedIndex]==-99.0f)?"unavailable":this.pullLoc2[pickedIndex] + "(mm)");
- }
-
- return msg.toString();
-
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/data/ATrigS3DData.java b/graphics/AtlantisJava/src/atlantis/data/ATrigS3DData.java
deleted file mode 100644
index 2a20340f4ea..00000000000
--- a/graphics/AtlantisJava/src/atlantis/data/ATrigS3DData.java
+++ /dev/null
@@ -1,252 +0,0 @@
-package atlantis.data;
-
-import atlantis.event.*;
-import atlantis.globals.AGlobals;
-import atlantis.graphics.ACoord;
-import atlantis.parameters.AParameter;
-import atlantis.parameters.AParameterUtilities;
-import atlantis.utils.AHashMap;
-import atlantis.utils.AMath;
-
-
-/**
- *
- * Trigger SpacePoints
- *
- * barcodes + numBarcodes - associations with Truth (STr)
- * clusters - associations with SiClusters and over it with reconstructed
- * tracks (Track)
- *
- * cleanup notes:
- * methods makeFilterDrawList(), getIntegerEta(), getIntegerPhi() were removed
- * as these were only used by AFilter in S3D (this class was obviously the
- * origin for the others) but AFilter doesn't work with TrigS3D
- * other also unused methods are getLayer() and getSub() - what are these
- * used for?
- *
- */
-public class ATrigS3DData extends A3DPointData
-{
- private int[][] clusters = null;
-
- // data from the event file
- protected int[] layer = null;
-
- private boolean[] pixel = null;
- public static final int PIXEL = -1;
-
-
-
- public String getParameterGroup()
- {
- return "TrigS3D";
- }
-
-
-
- public String getName()
- {
- return "TrigS3D";
- }
-
-
-
- public String getNameScreenName()
- {
- return "TrigSiSpacePoint";
- }
-
-
-
- public String getHitInfo(int index)
- {
- int simpleOutput = AGlobals.instance().getSimpleOutput();
- if(simpleOutput>0) return getNameScreenName()+" index: " + index+"\n"+
- AMath.RHO+" = "+String.format("%.3f",rho[index])+"\n "+
- AMath.PHI+" = "+String.format("%.3f",Math.toDegrees(phi[index]))+AMath.DEGREES;
-
- String clId = " (" + clusters[index][0] + ", " +
- clusters[index][1] + ")";
- String type = pixel[index] ? " (Pixel)" : " (SCT)";
-
- String r = "";
- r += getNameScreenName() + " (id: " + id[index] + " index: " + index + ")" +
- clId + type + "\n " +
- "x = " + String.format("%.3f",x[index]) + " cm\n " +
- "y = " + String.format("%.3f",y[index]) + " cm\n " +
- "z = " + String.format("%.3f",z[index]) + " cm\n " +
- AMath.RHO + " = " + String.format("%.3f",rho[index]) + " cm\n " +
- AMath.PHI + " = " +
- String.format("%.3f",Math.toDegrees(phi[index])) +
- AMath.DEGREES + " (" + String.format("%.3f",phi[index]) + " rad)\n " +
- " layer = " + layer[index];
- r += super.getHitInfo(index); // finds barcode information
-
- return r;
-
- } // getHitInfo() -------------------------------------------------------
-
-
-
- ATrigS3DData(AHashMap p, AEvent e)
- {
- super(p,e);
- layer = p.getUnknownIntArray("layer");
-
- if(p.get("clusters") != null)
- {
- // can only distinguish between SCT and Pixel hits if clusters
- // subtag is available
- pixel = new boolean[numData];
- // save IDs from event file to be availeble with pick info
- clusters = new int[numData][];
-
- int[][] assocClusters = new int[numData][];
- int[] temp = p.getIntArray("clusters");
- for(int i = 0; i < numData; ++i)
- {
- // save all clusters IDs
- clusters[i] = new int[] { temp[2 * i], temp[2 * i + 1] };
-
- // check if the second number, PIXEL (-1) designates pixel hit
- if(temp[2 * i + 1] != PIXEL)
- {
- // this is SCT spacepoint - has got two clusters
- assocClusters[i] = new int[] { temp[2 * i], temp[2 * i + 1] };
- }
- else
- {
- // this is a pixel spacepoint (second cluster number is -1)
- pixel[i] = true;
-
- // to ignore associtiation between pixel clusters and spacepoints:
- // assocClusters[i] = null;
-
- // taking pixel cluster into account (pixel spacepoint has got
- // only one cluster) (where as SCT spacepoint has got two clusters)
- assocClusters[i] = new int[] { temp[2 * i] };
- }
- }
- AAssociation assoc = new AAssociation(getName(), "SiCluster",
- assocClusters,event);
- event.getAssociationManager().add(assoc);
- }
-
- } // ATrigS3DData() -----------------------------------------------------
-
-
-
- protected void finalizeConstruction()
- {
- super.finalizeConstruction();
- super.calculateAssociationViaClusters();
-
- } // finalizeConstruction() ---------------------------------------------
-
-
-
- protected int internalColor()
- {
- int numColorTypes = super.internalColor();
- int colorFunction = parameterStore.get(PARAMETER_GROUP, "ColorFunction").getI();
- if(colorFunction == numColorTypes + 1)
- {
- colorBy(layer);
- }
-
- return numColorTypes + 1;
-
- } // internalColor() ----------------------------------------------------
-
-
- protected void applyCuts()
- {
- cutIndex();
- cutSubdetector();
- cut("CutsInDet", "Layer", "Layer", layer);
- cutPhi(phi);
- cutEta(rho, z);
- cutSimulatedTracks();
- cutReconstructedTracks();
-
- } // applyCuts() --------------------------------------------------------
-
-
- private void cutSubdetector()
- {
- AParameter subPar = parameterStore.get("CutsInDet", "SCT");
- if(subPar.getI() != -1)
- {
- cutArray(sub, subPar.getI(), "Barrel/Endcap");
- }
-
- } // cutSubdetector() ---------------------------------------------------
-
-
-
- public int[] getLayer(int[] layer)
- {
- for(int i = 0; i < numDraw; i++)
- {
- layer[i] = this.layer[listdl[i]];
- }
- return layer;
-
- } // getLayer() ---------------------------------------------------------
-
-
-
- public int getSub(int id)
- {
- if(id > -1)
- {
- return(id >> 25) & 0x3;
- }
- else
- {
- return(id >> 29) & 0x3;
- }
-
- } // getSub() -----------------------------------------------------------
-
-
-
- protected ACoord getFRUser()
- {
- if(!parameterStore.get("SiCluster", "Stereo").getStatus())return super.getFRUser();
- makeDrawList();
- double[] h = new double[numDraw];
- double[] v = new double[numDraw];
- int[] index = new int[numDraw];
- for(int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
- h[i] = rho[list];
- v[i] = Math.toDegrees(AParameterUtilities.getPhiStereo(rho[list], phi[list], z[list]));
- index[i] = list;
- }
- return new ACoord(h, v, index, this).includePhiWrapAround("FR");
-
- } // getFRUser() --------------------------------------------------------
-
-
-
- protected ACoord getFZUser()
- {
- if(!parameterStore.get("SiCluster", "Stereo").getStatus())return super.getFZUser();
- makeDrawList();
- double[] h = new double[numDraw];
- double[] v = new double[numDraw];
- int[] index = new int[numDraw];
- for(int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
- h[i] = z[list];
- v[i] = Math.toDegrees(AParameterUtilities.getPhiStereo(rho[list], phi[list], z[list]));
- index[i] = list;
- }
- return new ACoord(h, v, index, this).includePhiWrapAround("FZ");
-
- } // getFZUser() --------------------------------------------------------
-
-} // class ATrigS3DData =====================================================
diff --git a/graphics/AtlantisJava/src/atlantis/data/ATriggerInfoData.java b/graphics/AtlantisJava/src/atlantis/data/ATriggerInfoData.java
deleted file mode 100644
index 4e9b000c650..00000000000
--- a/graphics/AtlantisJava/src/atlantis/data/ATriggerInfoData.java
+++ /dev/null
@@ -1,213 +0,0 @@
-package atlantis.data;
-
-import atlantis.event.AData;
-import atlantis.event.AEvent;
-import atlantis.utils.AHashMap;
-
-public class ATriggerInfoData extends AData
-{
- private float[] energyEtMiss;
- //private float[] energyEx;
- //private float[] energyEy;
- private float[] energySumEt;
- private String[] trigInfoEF;
- private String[] trigInfoExtL1ID;
- private String[] trigInfoL1;
- private String[] trigInfoL2;
- private String[] trigInfoLvl1Type;
- private String[] trigInfoStatus;
- private String[] trigInfoStreamTag;
-
- ATriggerInfoData(AHashMap p, AEvent e)
- {
- super(p,e);
- energyEtMiss = p.getUnknownFloatArray("energyEtMiss");
- //energyEx = p.getUnknownFloatArray("energyEx");
- //energyEy = p.getUnknownFloatArray("energyEy");
- energySumEt = p.getUnknownFloatArray("energySumEt");
- trigInfoEF = p.getStringArray("trigInfoEF");
- trigInfoExtL1ID = p.getStringArray("trigInfoExtL1ID");
- trigInfoL1 = p.getStringArray("trigInfoL1");
- trigInfoL2 = p.getStringArray("trigInfoL2");
- trigInfoLvl1Type = p.getStringArray("trigInfoLvl1Type");
- trigInfoStatus = p.getStringArray("trigInfoStatus");
- trigInfoStreamTag = p.getStringArray("trigInfoStreamTag");
- }
-
- protected void applyCuts()
- {}
-
- public String getHitInfo(int index)
- {
- return "TriggerInfo";
- }
-
- protected int internalColor()
- {
- int colorFunction = parameterStore.get(PARAMETER_GROUP, "ColorFunction").getI();
-
- if(colorFunction == 0)
- colorByConstant();
-
- return 3;
- }
-
- public String getParameterGroup()
- {
- return "TriggerInfo";
- }
-
- public String getNameScreenName()
- {
- return "TriggerInfo";
- }
-
- /**
- * For backward compatibility if this is null or -1
- * also check the value returned from ALVL1ResultData
- */
- public float getEnergyEtMiss(int index)
- {
- return energyEtMiss[index];
- }
-
- /*public float getEnergyEx(int index)
- {
- return energyEx[index];
- }
- public float getEnergyEy(int index)
- {
- return energyEy[index];
- }*/
-
- /**
- * For backward compatibility if this is null or -1
- * also check the value returned from ALVL1ResultData
- */
- public float getEnergySumEt(int index)
- {
- return energySumEt[index];
- }
-
- public String getTrigInfoEF(int index)
- {
- return trigInfoEF[index];
- }
-
- /**
- * Returns the individual parts of the list seperated by -
- */
- public String[] getTrigInfoEFSplit(int index)
- {
- if(trigInfoEF!=null)
- return splitItems(trigInfoEF[index]);
- else
- return null;
- }
-
- /**
- * Returns the hex values of the
- * individual parts of the list seperated by -
- */
- public String[] getTrigInfoEFSplitHex(int index)
- {
- return hexValues(splitItems(trigInfoEF[index]));
- }
-
- public String getTrigInfoExtL1ID(int index)
- {
- return trigInfoExtL1ID[index];
- }
-
- public String getTrigInfoL1(int index)
- {
- return trigInfoL1[index];
- }
-
- /**
- * Returns the individual parts of the list seperated by -
- */
- public String[] getTrigInfoL1Split(int index)
- {
- if(trigInfoL1!=null)
- return splitItems(trigInfoL1[index]);
- else
- return null;
- }
-
- /**
- * Returns the hex values of the
- * individual parts of the list seperated by -
- */
- public String[] getTrigInfoL1SplitHex(int index)
- {
- return hexValues(splitItems(trigInfoL1[index]));
- }
-
- public String getTrigInfoL2(int index)
- {
- return trigInfoL2[index];
- }
-
- /**
- * Returns the individual parts of the list seperated by -
- */
- public String[] getTrigInfoL2Split(int index)
- {
- if(trigInfoL2!=null)
- return splitItems(trigInfoL2[index]);
- else
- return null;
- }
-
- /**
- * Returns the hex values of the
- * individual parts of the list seperated by -
- */
- public String[] getTrigInfoL2SplitHex(int index)
- {
- return hexValues(splitItems(trigInfoL2[index]));
- }
-
- public String getTrigInfoLvl1Type(int index)
- {
- return trigInfoLvl1Type[index];
- }
-
- public String getTrigInfoStatus(int index)
- {
- return trigInfoStatus[index];
- }
-
-
- public String getTrigInfoStreamTag(int index)
- {
- return trigInfoStreamTag[index];
- }
-
- /**
- * Returns the individual parts of the list seperated by -
- */
- public String[] getTrigInfoStreamTagSplit(int index)
- {
- if(trigInfoStreamTag!=null)
- return splitItems(trigInfoStreamTag[index]);
- else
- return null;
- }
-
-
- /**
- * Returns the hex values of each element in the string
- * string[] items represents a long[]
- */
- private String[] hexValues(String[] items)
- {
- for(int i=0; i<items.length; i++)
- {
- long longvalue= Long.valueOf(items[i]).longValue();
- items[i] = "0x"+Long.toString(longvalue, 16).toUpperCase();
- }
- return items;
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/data/AVertex.java b/graphics/AtlantisJava/src/atlantis/data/AVertex.java
deleted file mode 100755
index ed4ea9643d7..00000000000
--- a/graphics/AtlantisJava/src/atlantis/data/AVertex.java
+++ /dev/null
@@ -1,328 +0,0 @@
-package atlantis.data;
-
-import Jama.Matrix;
-
-import java.util.HashMap;
-import java.util.Map;
-import atlantis.parameters.APar;
-import atlantis.parameters.AParameterUtilities;
-import atlantis.projection.AProjectionXZ;
-import atlantis.projection.AProjectionYX;
-import atlantis.projection.AProjectionYZ;
-import atlantis.utils.AMath;
-import atlantis.utils.AAtlantisException;
-
-/**
- *
- * Reconstructed vertex instance. Either calculated in
- * Atlantis (atlantis.utils.AVertexFit class) or read in from the event data as
- * RVx datatype. RVx class keeps track of all the reconstructed vertices
- * and contains instances of this class Avertex.
- * (2005-08-08 refactoring and clean-ups)
- * (2006-01-10 covMatrix, errMatrix variables were messed up (covMatrix
- * numbers were huge - was actually the inverse - the weight matrix. AVertexFit
- * code didn't give any ideas, very unclear code - covFittedMatrix there
- * was used to initialize errMatrix here ...))
- *
- *
- * variables names renaming:
- * covMatrix -> weightMatrix
- * errMatrix -> covErrorMatrix
- *
- * @author Gary Taylor
- */
-public class AVertex
-{
- // size of the arrays with coordinates of the RVx ellipse and matrices
- private static final int SIZE = 3;
-
- // basic RVx data
- private double[] position = null; // x, y, z centre of the ellipse
- private double chi2 = 1.e+10;
- private Matrix covErrMatrix = null; // covariance error matrix
- private Matrix weightMatrix = null; // inverse matrix of covErrMatrix
- private double phi; // phi of the ellipse
- private double rho; // rho of the ellipse
-
- private static APar parameterStore = APar.instance();
-
- public AVertex(double[] p)
- {
- position = new double[SIZE];
-
- if (p.length != SIZE)
- {
- throw new IllegalArgumentException("p.length=" + p.length);
- }
- for (int i = 0; i < SIZE; ++i)
- {
- position[i] = p[i];
- }
- } // AVertex() ----------------------------------------------------------
-
- /**
- * @param p double[] - x, y, z positions of the centre of the ellipse
- * @param c double[][] - input for covErrMatrix
- * @param chiSquared double
- */
- public AVertex(double[] p, double[][] c, double chiSquared)
- {
- testInputArrays(p, c);
-
- position = new double[SIZE];
- double[][] covErr = new double[SIZE][SIZE];
-
- for (int i = 0; i < SIZE; ++i)
- {
- position[i] = p[i];
- }
- phi = Math.atan2(p[1], p[0]);
- if (phi < 0.)
- phi += AMath.TWO_PI;
- rho = Math.sqrt(p[0] * p[0] + p[1] * p[1]);
- for (int i = 0; i < SIZE; ++i)
- {
- for (int j = 0; j < SIZE; ++j)
- {
- covErr[i][j] = c[i][j];
- }
- }
-
- covErrMatrix = new Matrix(covErr);
- weightMatrix = covErrMatrix.inverse();
- this.chi2 = chiSquared;
- } // AVertex() ----------------------------------------------------------
-
- /**
- *
- * @param chiSquared double
- * @param p double[] - x, y, z positions of the centre of the ellipse
- * @param c double[][] - input for covErrMatrix
- */
- public AVertex(double chiSquared, double[] p, double[][] c) throws AAtlantisException
- {
- testInputArrays(p, c);
-
- chi2 = chiSquared;
-
- position = new double[SIZE];
-
- for (int i = 0; i < SIZE; ++i)
- {
- position[i] = p[i];
- }
-
- phi = Math.atan2(p[1], p[0]);
- if (phi < 0.)
- phi += AMath.TWO_PI;
- rho = Math.sqrt(p[0] * p[0] + p[1] * p[1]);
-
- double[][] covErr = new double[SIZE][SIZE];
- for (int x = 0; x < SIZE; x++)
- {
- covErr[x] = (double[]) c[x].clone();
- }
-
- try
- {
- covErrMatrix = new Matrix(covErr);
- weightMatrix = covErrMatrix.inverse();
- }
- catch (Exception ex)
- {
- String msg = "Error when creating covariance and/or weight\n" + "matrix in AVertex class.\nReason: " + ex.getMessage();
- throw new AAtlantisException(msg);
- }
- } // AVertex() ----------------------------------------------------------
-
- private void testInputArrays(double[] p, double[][] c) throws IllegalArgumentException
- {
- if (p.length != SIZE)
- {
- throw new IllegalArgumentException("p.length = " + p.length);
- }
-
- if (c.length != SIZE)
- {
- throw new IllegalArgumentException("c.length = " + c.length);
- }
-
- for (int i = 0; i < SIZE; ++i)
- {
- if (c[i].length != SIZE)
- {
- throw new IllegalArgumentException("c[" + i + "].length = " + c[i].length);
- }
- }
- } // testInputArrays() --------------------------------------------------
-
- public double[] getPosition()
- {
- return (double[]) position.clone();
- } // getPosition() ------------------------------------------------------
-
- public Matrix getCovErrMatrix()
- {
- return covErrMatrix;
- } // getCovErrMatrix() --------------------------------------------------
-
- public double getRho()
- {
- return rho;
- }
-
- public double getPhi()
- {
- return phi;
- }
-
- public String toString()
- {
- StringBuffer msg = new StringBuffer(" x = ");
- msg.append(String.format("%.5f",position[0]));
- msg.append(" ");
- msg.append(AMath.PLUSMINUS);
- msg.append(" ");
- msg.append(String.format("%.3f",Math.sqrt(covErrMatrix.get(0, 0))));
- msg.append(" cm\n y = ");
- msg.append(String.format("%.5f",position[1]));
- msg.append(" ");
- msg.append(AMath.PLUSMINUS);
- msg.append(" ");
- msg.append(String.format("%.3f",Math.sqrt(covErrMatrix.get(1, 1))));
- msg.append(" cm\n z = ");
- msg.append(String.format("%.5f",position[2]));
- msg.append(" ");
- msg.append(AMath.PLUSMINUS);
- msg.append(" ");
- msg.append(String.format("%.3f",Math.sqrt(covErrMatrix.get(2, 2))));
- msg.append(" cm\n ");
- msg.append(AMath.ETA);
- msg.append(" = ");
- msg.append(String.format("%.4f",AParameterUtilities.eta(position[2], rho)));
- msg.append("\n ");
- msg.append(AMath.PHI);
- msg.append(" = ");
- msg.append(String.format("%.1f",Math.toDegrees(phi)));
- msg.append(AMath.DEGREES);
- msg.append("\n chi2 = ");
- msg.append(String.format("%.1f",chi2));
-
- return msg.toString();
- } // toString() ---------------------------------------------------------
-
- // Ask Alan Litke to explain this calculation
- private double[][] getEllipse(Matrix rM, int[] axisMapping)
- {
- Matrix parPrime = rM.times(new Matrix(position, position.length));
-
- double a1 = weightMatrix.get(axisMapping[0], axisMapping[0]);
- double a2 = weightMatrix.get(axisMapping[1], axisMapping[1]);
- double a3 = weightMatrix.get(axisMapping[2], axisMapping[2]);
- double a4 = 2. * weightMatrix.get(axisMapping[0], axisMapping[1]);
- double a5 = 2. * weightMatrix.get(axisMapping[0], axisMapping[2]);
- double a6 = 2. * weightMatrix.get(axisMapping[1], axisMapping[2]);
- double b1 = a1 - a5 * a5 / (4. * a3);
- double b2 = a2 - a6 * a6 / (4. * a3);
- double b3 = a4 - 2 * a5 * a6 / (4. * a3);
- double[][] hv = new double[2][360];
- double sigma = parameterStore.get("RVx", "NumSigma").getD();
- for (int i = 0; i < 360; ++i)
- {
- double thetat = Math.toRadians(i);
- double tt = Math.tan(thetat);
- double x = Math.sqrt(sigma * sigma / (b1 + b2 * tt * tt + b3 * tt));
- if (i > 90 && i <= 270)
- x *= -1.;
- hv[0][i] = x + parPrime.get(axisMapping[0], 0);
- hv[1][i] = x * tt + parPrime.get(axisMapping[1], 0);
- }
- return hv;
- } // getEllipse() -------------------------------------------------------
-
- public double[][] getYXEllipse()
- {
- Matrix rM = new Matrix(AProjectionYX.getRotationMatrix());
- int[] axisMapping = AProjectionYX.getAxisMapping();
-
- return getEllipse(rM, axisMapping);
- } // getYXEllipse() -----------------------------------------------------
-
- public double[][] getYZEllipse()
- {
- Matrix rM = new Matrix(AProjectionYZ.getRotationMatrix());
- int[] axisMapping = AProjectionYZ.getAxisMapping();
-
- return getEllipse(rM, axisMapping);
- } // getYZEllipse() -----------------------------------------------------
-
- public double[][] getXZEllipse()
- {
- Matrix rM = new Matrix(AProjectionXZ.getRotationMatrix());
- int[] axisMapping = AProjectionXZ.getAxisMapping();
-
- return getEllipse(rM, axisMapping);
- } // getXZEllipse() -----------------------------------------------------
-
- public double[][] getRZEllipse()
- {
- double phiMid = Math.toRadians(parameterStore.get("RZ", "Phi").getD());
- double phiDiff = Math.abs(phi-phiMid);
- int rSign; if (phiDiff > Math.PI/2. && phiDiff <= 3*Math.PI/2.) rSign = -1; else rSign = 1;
-
- double[][] hv = new double[2][360];
- double sigma = parameterStore.get("RVx", "NumSigma").getD();
- for (int i = 0; i < 360; ++i)
- {
- double thetat = Math.toRadians(i);
- double ey = Math.sqrt(Math.sqrt(covErrMatrix.get(0,0)*covErrMatrix.get(0,0)+covErrMatrix.get(1,1)*covErrMatrix.get(1,1)));
- double ex = Math.sqrt(covErrMatrix.get(2,2));
- hv[1][i] = rSign * Math.sqrt(position[0]*position[0]+position[1]*position[1]) + sigma*ey*Math.sin(thetat);
- hv[0][i] = position[2] + sigma*ex*Math.cos(thetat);
- //System.out.println(i+" "+thetat+" "+hv[0][i]+" "+hv[1][i]);
- }
- return hv;
- } // getXZEllipse() -----------------------------------------------------
-
- // Vertex type - enum same as in Athena
-
- enum Type {
- DUMMY (0, "Dummy. Track particle was not used in vertex fit."),
- PRIMARY (1, "Primary"),
- SECONDARY (2, "Secondary"),
- PILEUP (3, "Pile-up"),
- CONVERSION (4, "Conversion"),
- V0 (5, "V0 decay"),
- KINK (6, "Kink"),
- TEMPV0LAMBDA (7, "Temporary Addition for V0 Lambda"),
- TEMPV0LAMBDABAR (8, "Temporary Addition for V0 LambdaBar"),
- TEMPKSHORT (9, "Temporary Addition for KShort"),
- DEFAULT (99, "Not specified");
-
- public final int id;
- public final String description;
-
- private static Map<Integer,Type> typeMap = new HashMap<Integer,Type>();
- static {
- for (Type type : Type.values()) {
- typeMap.put(type.id, type);
- }
- }
-
- /**
- * Get vertex type corresponding to given integer type identifier.
- * @param id type identifier
- * @return vertex type
- */
- public static Type typeFromId(int id) {
- return typeMap.get(id);
- }
-
- private Type (int id, String description) {
- this.id = id;
- this.description = description;
- }
- }
-
-}
-
\ No newline at end of file
diff --git a/graphics/AtlantisJava/src/atlantis/data/AVertexFit.java b/graphics/AtlantisJava/src/atlantis/data/AVertexFit.java
deleted file mode 100755
index 09fba478e39..00000000000
--- a/graphics/AtlantisJava/src/atlantis/data/AVertexFit.java
+++ /dev/null
@@ -1,289 +0,0 @@
-package atlantis.data;
-
-import atlantis.parameters.APar;
-import atlantis.utils.ALogger;
-
-import Jama.*;
-
-
-/**
- * This class provide a java implementation of the ALEPH vertex fitting
- * routine YTOPOL. At the moment the only functionality is the fitting
- * of ATLAS helices to a common vertex. A reasonable starting vertex for the
- * fit must be given. For B decays the primary vertex should be good enough.
- * Future improvements in functionality could include estimation of a
- * starting vertex and including in the fitting also already calculated
- * vertices and charged and neutral particles
- */
-
-public class AVertexFit {
- private static ALogger logger = ALogger.getLogger(AVertexFit.class);
- private static APar parameterStore = APar.instance();
-
- private static final int MXITR=8;
- private static final double CHISC=1.E-2;
- private static final double CHISR=0.01;
- private static final double PARCR=0.01;
- private static final boolean DEBUG=false;
-
- private AVertexFit() {}
-
- public static AVertex fitVertex(AVertex estimatedVertex, AHelix[] helix) {
- Matrix[] measuredHelix=new Matrix[helix.length];
- Matrix[] covHelix=new Matrix[helix.length];
- Matrix[] errHelix=new Matrix[helix.length];
-
- for(int k=0; k<helix.length; ++k) {
- double[] par=helix[k].getPar();
- double[][] cov=helix[k].getCovariance();
- double signD0=-1.;
- double signPt=1.;
-
- par[0]*=signD0;
- par[4]*=signPt;
-
- for(int i=0; i<5; ++i) {
- cov[0][i]*=signD0;
- cov[i][0]*=signD0;
- cov[4][i]*=signPt;
- cov[i][4]*=signPt;
- }
-
- measuredHelix[k]=new Matrix(par, par.length);
- covHelix[k]=new Matrix(cov);
- errHelix[k]=covHelix[k].inverse();
-
- // AOutput.logln( "measuredHelix "+k+" "+measuredHelix[k]);
- // AOutput.logln( measuredHelix[k].toString());
- // AOutput.logln( covHelix[k].toString());
-
- }
-
- int numFreeParam=3+3*helix.length;
- Matrix fitted=new Matrix(numFreeParam, 1);
- double[] estVertex=estimatedVertex.getPosition();
- int ipar;
-
- for(ipar=0; ipar<3; ++ipar)
- fitted.set(ipar, 0, estVertex[ipar]);
- ipar=3;
- for(int k=0; k<helix.length; ++k) {
- fitted.set(ipar++, 0, parameterStore.get("Event", "Curvature").getD()/measuredHelix[k].get(4, 0)-measuredHelix[k].get(0, 0));
-
- fitted.set(ipar++, 0, measuredHelix[k].get(3, 0));
- fitted.set(ipar++, 0, measuredHelix[k].get(2, 0));
- }
-
- logger.debug("fittedHelix "+0+" "+new Transformation(fitted, 0).helixFromFitted());
- logger.debug("fittedHelix "+1+" "+new Transformation(fitted, 1).helixFromFitted());
-
- // AOutput.logln( fitted.toString());
-
- Matrix g=new Matrix(numFreeParam, 1);
- Matrix gg=new Matrix(numFreeParam, numFreeParam);
- int iteration=0;
- double chiso=0.;
- double chisq=0.;
- boolean converged;
-
- FITTINGLOOP:
- do {
- g.timesEquals(0.);
- gg.timesEquals(0.);
- for(int k=0; k<helix.length; ++k) {
- Transformation t=new Transformation(fitted, k);
-
- Matrix fittedHelix=t.helixFromFitted();
-
- logger.debug("fittedHelix "+k+" "+fittedHelix);
- Matrix dMdF=t.getHelixdMdF();
- Matrix delFM=fittedHelix.minus(measuredHelix[k]);
- // helices are independent of each other so can
- // use temporary matrices to avoid large matrix multiplications
- Matrix gtemp=(errHelix[k].times(dMdF)).transpose().times(delFM);
- Matrix ggtemp=dMdF.transpose().times(errHelix[k].times(dMdF));
-
- // now put these into the large matrices
- for(int i=0; i<3; ++i) {
- int ix=3+3*k;
-
- g.set(i, 0, g.get(i, 0)+gtemp.get(i, 0));
- g.set(ix+i, 0, g.get(ix+i, 0)+gtemp.get(3+i, 0));
- for(int j=0; j<3; ++j) {
- gg.set(i, j, gg.get(i, j)+ggtemp.get(i, j));
- gg.set(ix+i, j, gg.get(ix+i, j)+ggtemp.get(3+i, j));
- gg.set(i, ix+j, gg.get(i, ix+j)+ggtemp.get(i, 3+j));
- gg.set(ix+i, ix+j, gg.get(ix+i, ix+j)+ggtemp.get(3+i, 3+j));
- }
- }
- if(iteration==0) {
- double chih=delFM.transpose().times(errHelix[k].times(delFM)).get(0, 0);
-
- chiso+=Math.min(chih, 1.0e+10);
- // AOutput.logln( "initial chi2"+chih);
- }
- }
-
- // AOutput.logln( gg.toString());
-
- gg=gg.inverse();
- Matrix delFitted=gg.times(g);
-
- logger.debug("DELFITTED "+iteration+" "+delFitted.toString());
-
- fitted.minusEquals(delFitted);
-
- int jter=0;
- int kter=0;
-
- while(true) {
- if(kter>10) break FITTINGLOOP;
- if(jter>100) break FITTINGLOOP;
-
- double chish=0.;
-
- chisq=0.;
- for(int k=0; k<helix.length; ++k) {
- Transformation t=new Transformation(fitted, k);
- Matrix fittedHelix=t.helixFromFitted();
- Matrix delFM=fittedHelix.minus(measuredHelix[k]);
- double chih=delFM.transpose().times(errHelix[k].times(delFM)).get(0, 0);
-
- chish+=Math.min(chih, 1.0e+10);
- }
- chisq+=chish;
-
- double chis1=0.;
-
- if((chisq>chiso+0.0001&&jter==0)||chisq>1.1*chiso) {
- delFitted.timesEquals(0.5);
- fitted.plusEquals(delFitted);
- jter++;
- chis1=chisq;
- continue;
- } else {
- if(jter>0) {
- // estimate best parameters
- double chtrm=chis1+chiso-2.*chisq;
- double fx;
-
- if(chtrm>0.) {
- // concave chisq dependance
- fx=(chis1-chiso)/(2.*(chis1+chiso-2.*chisq));
- fx=Math.max(fx, -2.);
- fx=Math.min(fx, 2.);
- } else {
- // convex chisq dependance
- fx=-2.;
- }
- delFitted.timesEquals(fx);
-
- jter=0;
- kter++;
- continue;
- }
- }
- break;
- }
-
- double dchi2=chiso-chisq;
-
- chiso=chisq;
- converged=true;
- // check for change in chisq
- if(dchi2>CHISC&&dchi2>CHISR*chisq) converged=false;
- // check for change in parameters
- for(int i=0; i<numFreeParam; i++)
- if(delFitted.get(i, 0)*delFitted.get(i, 0)>PARCR*gg.get(i, i))
- converged=false;
- } while((!converged)&&iteration++<MXITR);
-
- double[] fittedVertex=new double[3];
- double[][] fittedVertexCov=new double[3][];
-
- for(int i=0; i<3; i++) {
- fittedVertex[i]=fitted.get(i, 0);
- fittedVertexCov[i]=new double[3];
- for(int j=0; j<3; j++)
- fittedVertexCov[i][j]=gg.get(i, j);
- }
-
- return new AVertex(fittedVertex, fittedVertexCov, chisq);
- }
-
- private static class Transformation {
- double rho, tau, phi0, d0, z0, sinPhi, cosPhi, sinDPhi, cosDPhi, eta, s, r, dPhi;
-
- Transformation(Matrix fitted, int iHelix) {
- int index=3+3*iHelix;
-
- eta=fitted.get(index++, 0);
- tau=fitted.get(index++, 0);
- phi0=fitted.get(index++, 0);
- double sinPhi0=Math.sin(phi0);
- double cosPhi0=Math.cos(phi0);
- double xC=-eta*sinPhi0;
- double yC=eta*cosPhi0;
-
- // if(DEBUG) AOutput.logln(" Afit xCyC"+iHelix+" "+xC+" "+yC+" "+eta);
-
- double xVxC=fitted.get(0, 0)-xC;
- double yVyC=fitted.get(1, 0)-yC;
-
- r=0.;
- if(eta>0.)
- r=Math.sqrt(xVxC*xVxC+yVyC*yVyC);
- else
- r=-Math.sqrt(xVxC*xVxC+yVyC*yVyC);
-
- d0=r-eta;
- sinPhi=xVxC/r;
- cosPhi=-yVyC/r;
- double phi=Math.atan2(sinPhi, cosPhi);
-
- if(phi-phi0<-Math.PI) phi+=2.*Math.PI;
- dPhi=phi-phi0;
- s=dPhi*r;
- z0=fitted.get(2, 0)-s*tau;
- sinDPhi=Math.sin(dPhi);
- cosDPhi=Math.cos(dPhi);
- rho=1./r;
- }
-
- Matrix getHelixdMdF() {
- Matrix dMdF=new Matrix(5, 6);
-
- double curvature = parameterStore.get("Event", "Curvature").getD();
- dMdF.set(4, 0, -curvature*rho*rho*sinPhi);
- dMdF.set(4, 1, curvature*rho*rho*cosPhi);
- dMdF.set(4, 3, -curvature*rho*rho*cosDPhi);
- dMdF.set(4, 5, -curvature*rho*rho*eta*sinDPhi);
- dMdF.set(3, 4, 1.);
- dMdF.set(2, 5, 1.);
- dMdF.set(0, 0, sinPhi);
- dMdF.set(0, 1, -cosPhi);
- dMdF.set(0, 3, cosDPhi-1.);
- dMdF.set(0, 5, eta*sinDPhi);
- dMdF.set(1, 0, -tau*(sinPhi*dPhi+cosPhi));
- dMdF.set(1, 1, tau*(cosPhi*dPhi-sinPhi));
- dMdF.set(1, 2, 1.);
- dMdF.set(1, 3, -tau*(dPhi*cosDPhi-sinDPhi));
- dMdF.set(1, 4, -s);
- dMdF.set(1, 5, -tau*(eta*(dPhi*sinDPhi+cosDPhi)-r));
- return dMdF;
- }
-
- Matrix helixFromFitted() {
- Matrix helix=new Matrix(5, 1);
-
- helix.set(4, 0, rho*parameterStore.get("Event", "Curvature").getD());
- helix.set(3, 0, tau);
- helix.set(2, 0, phi0);
- helix.set(0, 0, d0);
- helix.set(1, 0, z0);
- return helix;
- }
-
- }
-}
-
diff --git a/graphics/AtlantisJava/src/atlantis/data/package.html b/graphics/AtlantisJava/src/atlantis/data/package.html
deleted file mode 100644
index 15056059d09..00000000000
--- a/graphics/AtlantisJava/src/atlantis/data/package.html
+++ /dev/null
@@ -1,8 +0,0 @@
-<html>
-<head></head>
-<body>
-<p>All classes handling particular datatypes are part of this package.
-They all implement AData from the atlantis.event package.</p>
-</body>
-</html>
-
diff --git a/graphics/AtlantisJava/src/atlantis/event/AAssociation.java b/graphics/AtlantisJava/src/atlantis/event/AAssociation.java
deleted file mode 100755
index b2338def707..00000000000
--- a/graphics/AtlantisJava/src/atlantis/event/AAssociation.java
+++ /dev/null
@@ -1,298 +0,0 @@
-package atlantis.event;
-
-import atlantis.utils.ALogger;
-
-/**
- * Representation of the association between two data types. The association is
- * stored using the string name+storeGateKey for both data types.
- *
- * The actual association is a an array of arrays of integers. The first index
- * of this array is the index of an element in the first datatype. The array
- * then contains the Athena IDs of the element in the second datatype that are
- * associated to it. This is necessary because the second datatype might not
- * have been read from the XML file yet, so the indices are unknown.
- *
- * @todo Modify this class to perform a translation of Athena ID to Atlantis ID
- * for the identifiers of "b". This can be done together with purgeIDNotInData()
- * and avoids the need for continuously looking up Athena IDs when drawing.
- */
-public class AAssociation {
-
- /** Logger */
- private static final ALogger logger = ALogger.getLogger(AAssociation.class);
-
- /** Event this association belongs to */
- private final AEvent event;
-
- /** Identifying the datatype this association if from */
- private final String a;
-
- /** Identifying the datatype this association is to */
- private final String b;
-
- /**
- * Association, the first index is the index of an element of "a", the
- * second index then loops over the Athena IDs in "b" to which the element
- * of "a" is associated.
- */
- private final int[][] assoc;
-
- /**
- * Constructor, taking as input a flat array (btoa) and an array that
- * specifies how many entries correspond to each object in "a".
- *
- * For example:
- *
- * from = "Jet";
- * to = "Track";
- * numbtoa = {2, 0, 3};
- * btoa = {1, 5, 3, 4, 6};
- *
- * This means that the first jet in the event (index=0) is associated
- * to 2 tracks, namely index 1 and 5. The second jet has no associated
- * tracks and the third jet (index=2) is associated to 3 tracks, indices
- * 3, 4 and 6.
- *
- * Alternatively, numbtoa can be null. In that case the length of btoa has
- * to be equal to the number of entries in "a". Every object in "a" will be
- * associated to exactly one object in "b".
- *
- * @param from name+key this association is from, "a"
- * @param to name+key this association is to, "b"
- * @param numbtoa number of elements in "b" that each element in "a" is associated to
- * @param btoa contents of the association in flat array
- * @param e event object this association belongs to
- */
- public AAssociation(String from, String to, int[] numbtoa, int[] btoa, AEvent e) {
-
- // Association to STr is done using barcodes, this is the only exception
- // here: for barcodes ID=0 means no association. So we skip those entries.
- boolean skipZero = to.startsWith("STr") && numbtoa == null;
-
- event = e;
- a = from;
- b = to;
-
- if (btoa == null) {
-
- assoc = null;
-
- } else {
-
- if (numbtoa != null) {
-
- // Multiple "b" entries associated to an "a" entry
- assoc = new int[numbtoa.length][];
-
- int num = 0;
- for (int i = 0; i < numbtoa.length; ++i) {
- if (numbtoa[i] <= 0) {
- assoc[i] = new int[0];
- } else {
- assoc[i] = new int[numbtoa[i]];
- }
-
- for (int j=0; j<numbtoa[i]; ++j) {
- assoc[i][j] = btoa[num++];
- }
- }
-
- } else {
-
- // Simple 1-on-1 association
- assoc = new int[btoa.length][];
-
- for (int i=0; i<btoa.length; i++) {
- if (skipZero && btoa[i] <= 0) {
- assoc[i] = new int[0];
- } else {
- assoc[i] = new int[] { btoa[i] };
- }
- }
- }
-
- }
- }
-
- /**
- * Copy constructor
- *
- * @param from source datatype
- * @param to target datatype
- * @param associations association index arrays
- * @param e event the association belongs to
- */
- public AAssociation(String from, String to, int[][] associations, AEvent e) {
- event = e;
- a = from;
- b = to;
- assoc = associations;
- }
-
- /**
- * Get the name of association
- * @return association name, concatenation of the two data types it associates
- */
- public String getName() {
- return a + b;
- }
-
- /**
- * Get source data type of association
- * @return name of source data type
- */
- public String getFrom() {
- return a;
- }
-
- /**
- * Get target data type of association
- * @return name of target data type
- */
- public String getTo() {
- return b;
- }
-
- /**
- * Get association array
- * @return association array
- */
- public int[][] getData() {
- return assoc;
- }
-
- /**
- * Method that constructs the association b->a when only an association a->b
- * currently exists. The complication here is due to the fact that "a" uses
- * Atlantis indices (0, 1, ...), while "b" uses Athena IDs (1611690048,
- * 1635282976, etc.).
- *
- * @return inverted association
- */
- public AAssociation invert() {
-
- AData aData = event.get(a);
- AData bData = event.get(b);
-
- if (aData == null || bData == null) {
- logger.debug(getClass().getName()
- + ": No association found between " + a + " and " + b);
- return null;
-
- } else {
-
- try {
- // New assoc will have the same number of entries as "b"
- int[][] inv = new int[bData.getNumData()][];
-
- // Athena IDs of object "a"
- int[] ida = aData.getID();
-
- // Loop over all entries in "a", the current association array
- for (int i=0; i<assoc.length; ++i) {
- if (assoc[i] != null) {
- for (int j=0; j<assoc[i].length; ++j) {
-
- // For each associated entry in "b", we need to find
- // the index from the Athena ID
- int index = bData.getIndexFromId(assoc[i][j]);
-
- if (index != AData.NO_INVERSE) {
-
- if (inv[index] == null) {
-
- // The object in "a" is the first object that
- // this object in "b" is associated to. Create
- // a new array and add this entry.
- inv[index] = new int[] { ida[i] };
-
- } else {
-
- // The object in "b" is already associated to
- // other objects in "a". Retrieve the other
- // objects, increment the size and add the
- // current object in "a".
- int[] temp = new int[inv[index].length + 1];
- for (int k=0; k<inv[index].length; ++k) {
- temp[k] = inv[index][k];
- }
- temp[inv[index].length] = ida[i];
- inv[index] = temp;
- }
- }
- }
- }
- }
- return new AAssociation(b, a, inv, event);
-
- } catch (Exception e) {
- logger.error("Unable to invert association.", e);
- return null;
- }
- }
- } // invert() ---------------------------------------------------------------
-
- /**
- * Remove associations between items that are not present in the event data
- */
- void purgeIDNotInData() {
- // remove inconsistencies
- // TRT hits from RTr<->SiCluster
- // Association to an STr which does not exist in STr
-
- AData source = event.get(b);
- if (assoc == null || source == null) {
- return;
- }
- int INVALID_ID = -1; // (i hope!)
- for (int i = 0; i < assoc.length; i++) {
- if (assoc[i] != null) {
- int num = 0;
- for (int j = 0; j < assoc[i].length; j++) {
- if (source.getIndexFromId(assoc[i][j]) == AData.NO_INVERSE) {
- assoc[i][j] = INVALID_ID;
- num++;
- }
- }
- if (num > 0) {
- if (num == assoc[i].length) {
- assoc[i] = null;
- } else {
- int[] temp = new int[assoc[i].length - num];
- num = 0;
- for (int j = 0; j < assoc[i].length; j++) {
- if (assoc[i][j] != INVALID_ID) {
- temp[num++] = assoc[i][j];
- }
- }
- assoc[i] = temp;
- }
- }
- }
- }
- }
-
- /**
- * Convert association into an informational message for the user
- */
- @Override
- public String toString() {
- StringBuilder s = new StringBuilder();
- s.append(a).append(" to ").append(this.b);
- if (assoc == null) {
- s.append(" is empty\n");
- return s.toString();
- } else {
- s.append("\n");
- for (int i = 0; i < assoc.length; i++) {
- if (assoc[i] != null) {
- for (int j = 0; j < assoc[i].length; j++) {
- s.append(assoc[i][j]).append(" ");
- }
- s.append("\n");
- }
- }
- }
- return s.toString();
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/event/AAssociationManager.java b/graphics/AtlantisJava/src/atlantis/event/AAssociationManager.java
deleted file mode 100755
index cc1cbedaf47..00000000000
--- a/graphics/AtlantisJava/src/atlantis/event/AAssociationManager.java
+++ /dev/null
@@ -1,118 +0,0 @@
-package atlantis.event;
-
-
-import java.util.Collection;
-import java.util.HashMap;
-import java.util.Map;
-import java.util.Set;
-import java.util.TreeSet;
-
-import atlantis.utils.ALogger;
-
-public class AAssociationManager
-{
- private static ALogger logger = ALogger.getLogger(AAssociationManager.class);
-
- private Map<String, AAssociation> associations = new HashMap<String, AAssociation>();
-
- public AAssociationManager() {}
-
- public void clear()
- {
- associations = new HashMap<String, AAssociation>();
- }
-
- public void add(AAssociation a)
- {
- associations.put(a.getName(), a);
- }
-
- public void remove(String key)
- {
- associations.remove(key);
- }
-
- public int[][] get(String a, String b)
- {
- Object o = associations.get(a + b);
- if(o != null)
- {
- return((AAssociation) o).getData();
- }
- else
- {
- o = associations.get(b + a);
- if(o != null)
- {
- //AOutput.logln("AAssociationManager.get()\n" +
- // "querying non-existing association from-" + a + "-to-" + b +
- // "\ncalculating inverse association ...") ;
- AAssociation ass = ((AAssociation) o).invert();
- // following test prevents Atlantis from crashing if there
- // is something wrong with the association between clusters
- // and cells
- if(ass != null)
- {
- add(ass);
- return ass.getData();
- }
- else
- {
- String name = "AAssociationManager.get(): ";
- logger.debug(name + "No association " +
- "found between " + a + " and " + b);
- return null;
- }
- }
- }
- return null;
- } // get() --------------------------------------------------------------
-
-
- public AAssociation getAssociation(String a, String b)
- {
- return (AAssociation) associations.get(a + b);
- }
-
- public void correct()
- {
- Collection<AAssociation> c = associations.values();
- for (AAssociation a : c) {
- a.purgeIDNotInData();
- }
- }
-
-
- public String[] getKnownAssociations(String a)
- {
- Collection<AAssociation> c = associations.values();
- Set<String> list = new TreeSet<String>();
- for (AAssociation ass : c) {
- if(ass.getFrom().equals(a))
- {
- list.add(ass.getTo());
- }
- else if(ass.getTo().equals(a))
- {
- list.add(ass.getFrom());
- }
- }
- return (String[]) list.toArray(new String[list.size()]);
- }
-
-
- public String getAllKnownAssociations()
- {
- Collection<AAssociation> col = associations.values();
- StringBuilder r = new StringBuilder();
- int c = 0;
-
- for (AAssociation ass : col) {
- c++;
- r.append(c + " association from " + ass.getFrom() + " to " +
- ass.getTo() + " (name: " + ass.getName() + ")\n");
- }
-
- return r.toString();
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/event/ABufferedEventSource.java b/graphics/AtlantisJava/src/atlantis/event/ABufferedEventSource.java
deleted file mode 100644
index 7d089cf7ce8..00000000000
--- a/graphics/AtlantisJava/src/atlantis/event/ABufferedEventSource.java
+++ /dev/null
@@ -1,263 +0,0 @@
-package atlantis.event;
-
-import atlantis.output.ALogInterface;
-import atlantis.output.AOutput;
-import atlantis.utils.ALogger;
-import java.util.Vector;
-
-/**
- * Extension class to AEventSource providing buffering for a fixed number of events.
- * @author sboeser
- */
-public abstract class ABufferedEventSource implements AEventSource {
-
- //Logging interface
- private final static ALogger logger = ALogger.getLogger(ABufferedEventSource.class);
-
- //The index of the currently selected event in the list
- private static int currentEvent = -1;
- //The maximum number of events to save
- public static int maxNumberOfEvents = 1;
- //A vector of available events
- private static Vector<AEvent> eventContainer = new Vector<AEvent>();
- // the current event navigation mode
- private NavigationMode eventNavigationMode = NavigationMode.SEQUENTIAL;
-
- /**
- * Abstract read next event method to be implemented by all subclasses
- * @return the next event
- * @throws NoMoreEventsException
- * @throws InvalidEventSourceException
- * @throws ReadEventException
- */
- protected abstract AEvent readNext(AEventInfo currentEvent) throws NoMoreEventsException,
- InvalidEventSourceException,
- ReadEventException;
- /**
- * Abstract read previous event method to be implemented by all subclasses
- * @return the previous event
- * @throws NoMoreEventsException
- * @throws InvalidEventSourceException
- * @throws ReadEventException
- */
- protected abstract AEvent readPrevious(AEventInfo currentEvent) throws NoMoreEventsException,
- InvalidEventSourceException,
- ReadEventException;
-
- /**
- * Get the next event, either from the buildin buffer or by reading it in
- * @return the next event
- * @throws atlantis.event.AEventSource.NoMoreEventsException
- * @throws atlantis.event.AEventSource.InvalidEventSourceException
- * @throws atlantis.event.AEventSource.ReadEventException
- */
- public AEvent nextEvent() throws NoMoreEventsException,
- InvalidEventSourceException,
- ReadEventException
- {
- //Check if we are already at the last event
- if (currentEvent == eventContainer.size()-1){
-
- //if so, try to get another event
- AEvent event = null;
- try{
- event = readNext(getCurrentEventInfo());
- } catch ( OutOfMemoryError oom ) {
-
- //throw an error message
- logger.error("Ran out of memory while reading event data");
-
- //See if we can clear memory by removing events
- if ( getNumberOfEvents() > 0) {
- //be verbose
- logger.info("Clearing event cache and retry...");
- //remove events
- clearEventContainer();
- //Call garbage collector to free resources
- System.gc();
- //Now retry (no current event)
- event = readNext(null);
- }
- }
-
- //Add it to the eventContainer as last one
- addEvent(event,false);
-
- } else {
- // simply increase event counter
- setCurrentEvent(currentEvent+1);
- }
-
- //Now return the new current event
- return eventContainer.get(currentEvent);
- }
-
- public AEvent previousEvent() throws NoMoreEventsException,
- InvalidEventSourceException,
- ReadEventException {
-
- //Check if we are already at the first event
- if (currentEvent <= 0 ){
-
- //if so, try to get another event
- AEvent event = null;
- try{
- event = readPrevious(getCurrentEventInfo());
- } catch ( OutOfMemoryError oom ) {
-
- //throw an error message
- logger.error("Ran out of memory while reading event data");
-
- //See if we can clear memory by removing events
- if ( getNumberOfEvents() > 0) {
- //be verbose
- logger.info("Clearing event cache and retry...");
- //remove events
- clearEventContainer();
- //Call garbage collector to free resources
- System.gc();
- //Now retry (no current event)
- event = readPrevious(null);
- }
- }
-
- //Add it to the eventContainer as first one
- addEvent(event,true);
-
- } else {
- // simply decrease event counter
- setCurrentEvent(currentEvent-1);
- }
-
- //Now return the new current event
- return eventContainer.get(currentEvent);
-
- }
-
- /**
- * Get the event navigation mode for the current source.
- * @return current event navigation mode
- */
- public NavigationMode getNavigationMode() {
- return eventNavigationMode;
- }
-
- /**
- * Set the event navigation mode for the current source,
- * clears the buffer and reads the first event.
- * Throws InvalidEventSourceException if the current
- * source does not support the requested mode
- * @param mode requested event navigation mode
- */
- public void setNavigationMode(NavigationMode mode) throws InvalidEventSourceException
- {
- if(supportsNavigationMode(mode)) {
- NavigationMode oldMode = getNavigationMode();
- eventNavigationMode = mode;
-
- // empty the buffer
- clearEventContainer();
- } else
- throw new InvalidEventSourceException("Mode '"+mode.name()+"' not supported by current source");
- }
-
- /**
- * Checks whether the current event source supports
- * a particular display mode.
- * @return true if the mode is supported
- * @param mode requested event navigation mode
- */
- public abstract boolean supportsNavigationMode(NavigationMode mode);
-
- /**
- * Returns number of events saved in the eventContainer
- * @return int
- */
- public int getNumberOfEvents()
- {
- return eventContainer != null ? eventContainer.size() : 0;
-
- }
-
- /**
- * Add the given even to the event container. By default, events are added
- * to the end of the container. If skipping backward, it may be necessary to
- * add to the beginning of the container, as indicated by the asFirst flag
- * The new event will also be set as default event
- *
- * @param event the event to add
- * @param asFirst whether to add the event at the beginning (default is end)
- */
- private synchronized void addEvent(AEvent event, boolean asFirst)
- {
- //create event container if it does not exist
- if(eventContainer == null) eventContainer = new Vector<AEvent>();
-
- //Make sure container does not get too large
- while (eventContainer.size() >= maxNumberOfEvents){
- // remove at the side at which we are not adding event
- if (asFirst) eventContainer.remove(eventContainer.lastElement());
- else eventContainer.remove(0);
- }
-
- //At the end or at the beginning
- int index = (asFirst) ? 0 : eventContainer.size();
-
- //add the event
- eventContainer.add(index,event);
-
- //be verbose
- logger.debug(eventContainer.size() + " event(s) in memory");
-
- //set as current event
- setCurrentEvent(index);
- }
-
-
- /**
- * Clear the event container, reset the current event
- */
- protected synchronized void clearEventContainer()
- {
- //Make sure the event container exits before clearing it
- if(eventContainer != null){
- // let the user know
- String msg = "Clearing event container with "+getNumberOfEvents()+" events.";
- logger.warn(msg);
- AOutput.append(msg, ALogInterface.WARNING);
-
- //Clear the container
- eventContainer.clear();
- }
-
- //Alse reset current event
- currentEvent = -1;
-
- //Run the garbage collector to free space immediately
- System.gc();
-
- }
-
- private void setCurrentEvent(int index) {
- //Check for out-of-bounds
- if ((index < 0) || ( index >= eventContainer.size()))
- throw new ArrayIndexOutOfBoundsException("Cannot set index "+index+" in event container of size "+eventContainer.size());
- currentEvent = index;
- }
-
- /**
- * @return the curent event or null if there is none
- */
- private AEventInfo getCurrentEventInfo(){
-
- //Check if the current event is there
- try {
- //get the current events name
- return eventContainer.get(currentEvent);
- } catch (ArrayIndexOutOfBoundsException ex){
- //return an empty string if there is no current event
- return null;
- }
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/event/AData.java b/graphics/AtlantisJava/src/atlantis/event/AData.java
deleted file mode 100644
index 6bf4541ac22..00000000000
--- a/graphics/AtlantisJava/src/atlantis/event/AData.java
+++ /dev/null
@@ -1,1661 +0,0 @@
-package atlantis.event;
-
-import java.awt.Component;
-import java.util.Vector;
-import java.util.Collection;
-import javax.swing.Action;
-
-import org.w3c.dom.Node;
-import org.w3c.dom.NodeList;
-
-import atlantis.canvas.AWindow;
-import atlantis.data.ACompositeParticleData;
-import atlantis.globals.AGlobals;
-import atlantis.graphics.ACoord;
-import atlantis.graphics.ADrawParameters;
-import atlantis.graphics.ADrawable;
-import atlantis.graphics.AGraphics;
-import atlantis.graphics.colormap.AColorMap;
-import atlantis.list.AListManager;
-import atlantis.output.AExceptionHandler;
-import atlantis.parameters.AEnumeratorParameter;
-import atlantis.parameters.APar;
-import atlantis.parameters.AParameter;
-import atlantis.parameters.AParameterUtilities;
-import atlantis.projection.AProjection;
-import atlantis.projection.AProjection2D;
-import atlantis.projection.AProjection3D;
-import atlantis.projection.AProjectionFR;
-import atlantis.projection.AProjectionFZ;
-import atlantis.projection.AProjectionRZ;
-import atlantis.projection.AProjectionVP;
-import atlantis.projection.AProjectionXZ;
-import atlantis.projection.AProjectionYX;
-import atlantis.projection.AProjectionYZ;
-import atlantis.utils.A4Vector;
-import atlantis.utils.AHashMap;
-import atlantis.utils.AIntHashtable;
-import atlantis.utils.AMath;
-import atlantis.list.AListProcessor;
-import atlantis.utils.ALogger;
-
-/**
- * Base class which holds the data from a subdetector (e.g. TRT) This
- * representation is appropriate for data with a static number of entries but
- * not for example for reconstructed vertices the number of which may be changed
- * interactively by the user. AData should perhaps become an interface.
- */
-abstract public class AData implements ADrawable, AListProcessor {
- private static final ALogger logger = ALogger.getLogger(AData.class); //the event that this data belongs to
- protected static AEventManager eventManager = AEventManager.instance();
- protected static APar parameterStore = APar.instance();
- protected static Component guiComponent = AGlobals.instance().getGuiFrame();
- protected final AEvent event;
- protected static final int NO_INVERSE = -1;
- protected int numData;
- protected int numDraw;
- protected int[] listdl;
- protected byte[] color;
- protected int[] id;
- protected AIntHashtable indexFromId;
- protected String storeGateKey = null;
- protected final String PARAMETER_GROUP = getParameterGroup();
-
- abstract protected int internalColor();
-
- abstract protected void applyCuts();
-
- abstract public String getNameScreenName();
-
- abstract public String getHitInfo(int index); // pick info
-
- abstract public String getParameterGroup();
- // Holds the projection object that we are currently drawing on. This is *NOT* the same
- // as ACanvas.getCanvas().getCurrentWindow().getProjection(), since this function gives
- // the projection in the active window. Particularly at startup windows will be redrawn
- // without being the active window. Hence this variable.
- //
- // By the way: this is also inherently bad design. Why does the data need
- // to know about the projection? The main flaw is that the data draws itself,
- // rather then the graphics context drawing the data - S.B.
- protected AProjection2D currentProjection;
-
- // dummy version, only applies to dynamic data sources (e.g. RecVertex (RVx))
- public void remove(int[] index) {}
-
- // used to finalize the state of this object
- // after all other AData objects are essentially built
- // e.g. calculate the number of S3D hits on a track after both are read
- protected void finalizeConstruction() {}
-
- // x y and z are now stored
- // rho and phi arrays are only correct after a call to this function
- protected void calculateRhoPhi() {}
-
- // used by rubberband in V-Plot
- public String getVPHitInfo() {
- return "";
- }
-
- public AData(AHashMap p, AEvent e) {
- //save reference to the event this data belongs to
- event = e;
-
- numData = p.getInt("numData");
- numDraw = numData;
- listdl = new int[numData];
- color = new byte[numData];
-
- storeGateKey = (String) p.get("storeGateKey");
- if ("".equals(storeGateKey) || storeGateKey == null) {
- storeGateKey = null;
- }
-
- if (p.get("id") != null) {
- id = p.getIntArray("id");
- } else {
- id = new int[numData];
- for (int i = 0; i < numData; i++) {
- // start IDs calculated in Atlantis from 0, should be the same
- // as in JiveXML
- id[i] = i;
- }
- }
-
- indexFromId = new AIntHashtable(id);
- } // AData()
-
- AData(Node node, AEvent e) {
- //save reference to the event this data belongs to
- event = e;
- numData = 0;
- NodeList children = node.getChildNodes();
- for (int i = 0; i < children.getLength(); i++) {
- if (children.item(i).getNodeType() == Node.ELEMENT_NODE) {
- numData++;
- }
- }
- numDraw = numData;
- listdl = new int[numData];
- color = new byte[numData];
- id = new int[numData];
- for (int i = 0; i < numData; i++) {
- id[i] = i;
- }
- indexFromId = new AIntHashtable(id);
- }
-
- public AEvent getEvent(){
- return event;
- }
-
- public int getIndexFromId(int id) {
- return indexFromId.get(id);
- }
-
- public final A4Vector get4Vector() {
- makeDrawList();
- return get4Vector(numDraw, listdl);
- }
-
- // only applies to data which can provide 4 vectors
- public A4Vector get4Vector(int num, int[] list) {
- return null;
- }
-
- // only applies to data which can provide 4 vectors
- public A4Vector get4Vector(int num, int[] list, double mass) {
- return null;
- }
-
- public int getNumData() {
- return numData;
- }
-
- public int getNumDraw() {
- return numDraw;
- }
-
- public int getDrawIndex(int index) {
- return this.listdl[index];
- }
-
- public int[] getID() {
- return id;
- }
-
- protected int getNum(String name, int index) {
- int[][] ass = event.getAssociationManager().get(getFullName(), name);
- if (ass != null && ass[index] != null) {
- return ass[index].length;
- } else {
- return 0;
- }
- }
-
- protected int[] getNum(String name) {
- int[][] ass = event.getAssociationManager().get(getFullName(), name);
- int[] num = new int[numData];
- if (ass != null) {
- for (int i = 0; i < ass.length; ++i) {
- if (ass[i] != null) {
- num[i] = ass[i].length;
- }
- }
- }
- return num;
- }
-
- public byte[] getColor() {
- color();
- byte[] temp = new byte[id.length];
-
- for (int i = 0; i < temp.length; i++) {
- temp[i] = color[getIndexFromId(id[i])];
- }
- return temp;
- }
-
- public int[] getColor(int[] dl) {
- color();
- int[] temp = new int[dl.length];
-
- for (int i = 0; i < temp.length; i++) {
- temp[i] = color[dl[i]];
- }
- return temp;
- }
-
- public int getColor(int index){
- return color[index];
- }
-
- public void makeDrawList() {
- calculateRhoPhi();
- constructDefaultDrawlist();
- applyCuts();
- }
-
- public void constructDefaultDrawlist() {
- if (!parameterStore.get("CutsATLAS", "ByList").getStatus()) {
- // if some hits are on a list they must be drawn last
- int[][] temp = AListManager.getInstance().getColorMapping(this);
- int[] index = temp[0];
- int[] ctemp = temp[1];
- if (index.length > 0) {
- // AOutput.logln("AData.constructDefaultDrawlist() numData = " +
- // numData);
- int[] c = new int[numData];
- final int NONE = -999;
- for (int i = 0; i < numData; ++i) {
- c[i] = NONE;
- }
- for (int i = 0; i < index.length; ++i) {
- c[index[i]] = ctemp[i];
- }
- numDraw = 0;
- for (int i = 0; i < numData; ++i) {
- if (c[i] == NONE) {
- listdl[numDraw++] = i;
- }
- }
- for (int i = 0; i < numData; ++i) {
- if (c[i] != NONE && c[i] != AColorMap.INVISIBLE) {
- listdl[numDraw++] = i;
- // nb invisible are not in the drawlist
- }
- }
- } else {
- // this is the standard case
- numDraw = numData;
- for (int i = 0; i < numDraw; ++i) {
- listdl[i] = i;
- }
- }
- } else {
- // drawlist set by cuts.....
- boolean[] selected = AListManager.getInstance().getSelection(this);
- numDraw = 0;
- for (int i = 0; i < selected.length; ++i) {
- if (selected[i]) {
- listdl[numDraw++] = i;
- }
- }
- }
- }
-
- // provides the draw list as a boolean array parallel to the data array
- protected boolean[] isDrawn() {
- boolean[] drawn = new boolean[numData];
-
- for (int i = 0; i < numDraw; i++) {
- drawn[listdl[i]] = true;
- }
- return drawn;
- }
-
- public void cut(String groupName, String parameterName, String text, float[] array) {
- AParameter par = parameterStore.get(groupName, parameterName);
-
- if (par != null && par.getStatus() && array != null) {
- double value = par.getD();
- String operator = par.getOperator();
- int num = 0;
-
- if (par.isModulus()) {
- if (operator.equals("<")) {
- for (int i = 0; i < numDraw; i++) {
- if (Math.abs(array[listdl[i]]) < value) {
- listdl[num++] = listdl[i];
- }
- }
- } else if (operator.equals(">")) {
- // '>' really means '>=' for reals since they are real in
- // from ascii file and don't have full precison
- for (int i = 0; i < numDraw; i++) {
- if (Math.abs(array[listdl[i]]) >= value) {
- listdl[num++] = listdl[i];
- }
- }
- } else {
- throw new Error(operator + " operator not sensible for floats");
- }
- } else {
- if (operator.equals("<")) {
- for (int i = 0; i < numDraw; i++) {
- if (array[listdl[i]] < value) {
- listdl[num++] = listdl[i];
- }
- }
- } else if (operator.equals(">")) {
- // '>' really means '>=' for reals since they are real in
- // from ascii file
- // and don't have full precison
- for (int i = 0; i < numDraw; i++) {
- if (array[listdl[i]] >= value) {
- listdl[num++] = listdl[i];
- }
- }
- } else {
- throw new Error(operator + " operator not sensible for floats");
- }
- }
- numDraw = num;
- }
- }
-
- protected void cut(String groupName, String parameterName, String text, int[] array) {
- AParameter par = parameterStore.get(groupName, parameterName);
-
- if (par != null && par.getStatus() && array != null) {
- int value = par.getI();
-
- // consider two special cases: Electron/isEM and Photon/isEM
- if (parameterName.endsWith("isEM")) {
- if (!isEMValidate(value)) {
- return;
- }
- String binaryString = Integer.toBinaryString(value);
- Vector<String> possibleValues = getPossibleValues(binaryString);
- cutIsEM(text, array, possibleValues);
- } else {
- String operator = par.getOperator();
- boolean modulus = par.isModulus();
-
- cut(text, modulus, array, operator, value);
- }
- }
- }
-
- protected void cut(String text, int[] array, String operator, int value) {
- cut(text, false, array, operator, value);
- }
-
- protected void cut(String text, boolean modulus, int[] array, String operator, int value) {
- int num = 0;
-
- if (modulus) {
- if (operator.equals("<")) {
- for (int i = 0; i < numDraw; i++) {
- if (Math.abs(array[listdl[i]]) < value) {
- listdl[num++] = listdl[i];
- }
- }
- } else if (operator.equals(">")) {
- for (int i = 0; i < numDraw; i++) {
- if (Math.abs(array[listdl[i]]) > value) {
- listdl[num++] = listdl[i];
- }
- }
- } else if (operator.equals("=") || operator.equals("==")) {
- for (int i = 0; i < numDraw; i++) {
- if (Math.abs(array[listdl[i]]) == value) {
- listdl[num++] = listdl[i];
- }
- }
- } else if (operator.equals("!=") || operator.equals(AMath.NOTEQUAL)) {
- for (int i = 0; i < numDraw; i++) {
- if (Math.abs(array[listdl[i]]) != value) {
- listdl[num++] = listdl[i];
- }
- }
- } else if (operator.equals("<=") || operator.equals(AMath.LESSEQUAL)) {
- for (int i = 0; i < numDraw; i++) {
- if (Math.abs(array[listdl[i]]) <= value) {
- listdl[num++] = listdl[i];
- }
- }
- } else if (operator.equals(">=") || operator.equals(AMath.GREATEREQUAL)) {
- for (int i = 0; i < numDraw; i++) {
- if (Math.abs(array[listdl[i]]) >= value) {
- listdl[num++] = listdl[i];
- }
- }
- } else {
- throw new Error(operator + " operator not sensible for integers");
- }
- } else {
- if (operator.equals("<")) {
- for (int i = 0; i < numDraw; i++) {
- if (array[listdl[i]] < value) {
- listdl[num++] = listdl[i];
- }
- }
- } else if (operator.equals(">")) {
- for (int i = 0; i < numDraw; i++) {
- if (array[listdl[i]] > value) {
- listdl[num++] = listdl[i];
- }
- }
- } else if (operator.equals("=") || operator.equals("==")) {
- for (int i = 0; i < numDraw; i++) {
- if (array[listdl[i]] == value) {
- listdl[num++] = listdl[i];
- }
- }
- } else if (operator.equals("!=") || operator.equals(AMath.NOTEQUAL)) {
- for (int i = 0; i < numDraw; i++) {
- if (array[listdl[i]] != value) {
- listdl[num++] = listdl[i];
- }
- }
- } else if (operator.equals("<=") || operator.equals(AMath.LESSEQUAL)) {
- for (int i = 0; i < numDraw; i++) {
- if (array[listdl[i]] <= value) {
- listdl[num++] = listdl[i];
- }
- }
- } else if (operator.equals(">=") || operator.equals(AMath.GREATEREQUAL)) {
- for (int i = 0; i < numDraw; i++) {
- if (array[listdl[i]] >= value) {
- listdl[num++] = listdl[i];
- }
- }
- } else {
- throw new Error(operator + " operator not sensible for integers");
- }
- }
- numDraw = num;
- }
-
- // cut based on the i'th item in the data array
- public void cutIndex() {
- AParameter par = parameterStore.get("CutsATLAS", "Index");
-
- if (par.getStatus()) {
- int value = par.getI();
- String operator = par.getOperator();
- int num = 0;
-
- if (operator.equals("<")) {
- for (int i = 0; i < numDraw; i++) {
- if (listdl[i] < value) {
- listdl[num++] = listdl[i];
- }
- }
- } else if (operator.equals(">")) {
- for (int i = 0; i < numDraw; i++) {
- if (listdl[i] > value) {
- listdl[num++] = listdl[i];
- }
- }
- } else if (operator.equals("=") || operator.equals("==")) {
- for (int i = 0; i < numDraw; i++) {
- if (listdl[i] == value) {
- listdl[num++] = listdl[i];
- }
- }
- } else if (operator.equals("!=") || operator.equals(AMath.NOTEQUAL)) {
- for (int i = 0; i < numDraw; i++) {
- if (listdl[i] != value) {
- listdl[num++] = listdl[i];
- }
- }
- } else if (operator.equals("<=") || operator.equals(AMath.LESSEQUAL)) {
- for (int i = 0; i < numDraw; i++) {
- if (listdl[i] <= value) {
- listdl[num++] = listdl[i];
- }
- }
- } else if (operator.equals(">=") || operator.equals(AMath.GREATEREQUAL)) {
- for (int i = 0; i < numDraw; i++) {
- if (listdl[i] >= value) {
- listdl[num++] = listdl[i];
- }
- }
- } else {
- throw new Error(operator + " operator not sensible for integers");
- }
- numDraw = num;
- }
- }
-
- protected void cutArray(int[] value, int cutValue, String description) {
- int num = 0;
-
- for (int i = 0; i < numDraw; i++) {
-
- if (value[listdl[i]] == cutValue) {
- listdl[num++] = listdl[i];
- }
- }
- numDraw = num;
- }
-
- protected void cutArray(byte[] value, int cutValue, String description) {
- int num = 0;
-
- for (int i = 0; i < numDraw; i++) {
-
- if (value[listdl[i]] == cutValue) {
- listdl[num++] = listdl[i];
- }
- }
- numDraw = num;
- }
-
- //isEMString cut declaration
- //
- // Clone of above cut, but to allow values less than or equal to the cut value
- // At the moment, Specific to isEMString for Electrons and Photons, and isTauString.
- //
- protected void cutArrayEnum(Vector<Enum> value, int cutValue, String description) {
- int num = 0;
-
- for (int i = 0; i < numDraw; i++) {
- if ((value.get(listdl[i]).ordinal()) <= cutValue) {
- listdl[num++] = listdl[i];
- }
- }
- numDraw = num;
- }
- // End isEMString cut declaration
-
- protected void cutArray(boolean[] value, boolean cutValue, String description) {
- int num = 0;
-
- for (int i = 0; i < numDraw; i++) {
- if (value[listdl[i]] == cutValue) {
- listdl[num++] = listdl[i];
- }
- }
- numDraw = num;
- }
-
- protected void cutArrayOR(int[] value, int cutValue1, int cutValue2,
- String description) {
- int num = 0;
-
- for (int i = 0; i < numDraw; i++) {
- if (value[listdl[i]] == cutValue1 || value[listdl[i]] == cutValue2) {
- listdl[num++] = listdl[i];
- }
- }
- numDraw = num;
- }
-
- // apply phi+-deltaphi cut to lines (e.g. TRT)
- protected void cutPhi(float[] phi, float[] dphi) {
- AParameter par = parameterStore.get("CutsATLAS", "CutPhi");
-
- if (!par.getStatus()) {
- return;
- }
- double phiCut = Math.toRadians(par.getD());
- double phiMid = Math.toRadians(AMath.nearestPhiDegrees(parameterStore.get("CutsATLAS", "PhiMiddle").getD()));
- double phiLowerCut = phiMid - phiCut;
- double phiUpperCut = phiMid + phiCut;
- int num = 0;
-
- for (int i = 0; i < numDraw; i++) {
- int list = listdl[i];
- double phiHit = AMath.nearestPhiRadians(phi[list], phiMid);
- double phiLower = phiHit - dphi[list];
- double phiUpper = phiHit + dphi[list];
-
- if (phiUpper - phiLowerCut > 1.0e-6 && phiUpperCut - phiLower > 1.0e-6) {
- listdl[num++] = list;
- }
- }
- numDraw = num;
- }
-
- /** Apply phi+-deltaphi cut to points (e.g. S3D) */
- public void cutPhi(float[] phi) {
- AParameter par = parameterStore.get("CutsATLAS", "CutPhi");
- boolean usePhiCut = par.getStatus();
-
- if (usePhiCut) {
- double phiCut = Math.toRadians(Math.abs(par.getD()));
- double phiMid = Math.toRadians(AMath.nearestPhiDegrees(parameterStore.get("CutsATLAS", "PhiMiddle").getD()));
- int num = 0;
-
- for (int i = 0; i < numDraw; i++) {
- double phiDiff = Math.abs(AMath.nearestPhiRadians(phi[listdl[i]], phiMid) - phiMid);
-
- if (phiCut - phiDiff > 1.0e-6) {
- listdl[num++] = listdl[i];
- }
- }
- numDraw = num;
- }
-
- }
-
- /** apply eta+-deltaeta cut to points (e.g. S3D) */
- public void cutEta(float[] eta) {
- AParameter par = parameterStore.get("CutsATLAS", "CutEta");
- boolean useEtaCut = par.getStatus();
-
- if (useEtaCut) {
- double etaCut = Math.abs(par.getD());
- double etaMid = parameterStore.get("CutsATLAS", "EtaMiddle").getD();
- int num = 0;
-
- for (int i = 0; i < numDraw; i++) {
- double etaDiff = Math.abs(eta[listdl[i]] - etaMid);
-
- if (etaCut - etaDiff > 1.0e-6) {
- listdl[num++] = listdl[i];
- }
- }
- numDraw = num;
- }
- }
-
- protected void colorByConstant() {
- if (!PARAMETER_GROUP.equals("CompositeParticle")) {
- int constantColor = parameterStore.get(PARAMETER_GROUP, "Constant").getI();
-
- for (int i = 0; i < numData; i++) {
- color[i] = (byte) constantColor;
- }
- } else {
- ACompositeParticleData compositeParticles = (ACompositeParticleData) this;
- compositeParticles.makeDrawList();
- for (int e = 0; e < compositeParticles.getNumDraw(); ++e) {
- int list = compositeParticles.getDrawIndex(e);
- switch (Math.abs(compositeParticles.getPdgId(list))) {
- case 13:
- color[list] = (byte) parameterStore.get("Muon", "Constant").getI();
- break;
- case 11:
- color[list] = (byte) parameterStore.get("Electron", "Constant").getI();
- break;
- case 22:
- color[list] = (byte) parameterStore.get("Photon", "Constant").getI();
- break;
- case 5:
- color[list] = (byte) parameterStore.get("BJet", "Constant").getI();
- break;
- case 15:
- color[list] = (byte) parameterStore.get("TauJet", "Constant").getI();
- break;
- case 24:
- color[list] = (byte) parameterStore.get("CompositeParticle", "ConstantW").getI();
- break;
- case 6:
- color[list] = (byte) parameterStore.get("CompositeParticle", "ConstantTop").getI();
- break;
- case 25:
- color[list] = (byte) parameterStore.get("CompositeParticle", "ConstantH").getI();
- break;
-
- default:
- if (compositeParticles.getTypeEV(list).equals("EVParticleJet")) {
- color[list] = (byte) parameterStore.get("Jet", "Constant").getI();
- } else {
- color[list] = (byte) parameterStore.get("CompositeParticle", "Constant").getI();
- }
- }
- }
- }
- }
-
-
- /** Colour by index.
- * e.g. colorByIndex(indexBy(phi));
- * will allow nearby phi tracks to be coloured differently.
- * @param index
- */
- protected void colorByIndex(int[] index) {
- int numColors = parameterStore.get("HitColors", "Number").getI();
-
- numColors = Math.min(7, numColors);
- int[] col = parameterStore.getArray("HitColors", "C1", numColors);
- for (int i = 0; i < numData; i++) {
- color[index[i]] = (byte) col[i % numColors];
- }
- }
-
- protected void colorByIndex() {
- int numColors = parameterStore.get("HitColors", "Number").getI();
-
- numColors = Math.min(7, numColors);
- int[] col = parameterStore.getArray("HitColors", "C1", numColors);
- for (int i = 0; i < numData; i++) {
- color[i] = (byte) col[i % numColors];
- }
- }
-
- protected void colorByCollection() {
- int constantColor = parameterStore.get(PARAMETER_GROUP, "Constant").getI();
- int numColors = parameterStore.get("HitColors", "Number").getI();
- int[] col = parameterStore.getArray("HitColors", "C1", numColors);
- AEvent ev = eventManager.getCurrentEvent();
- // vector with store gate keys for a particular datatype name: this.getName()
- Vector<String> v = ev.getCollections().get(this.getName());
- int keyIndex = 0;
- if (v != null && (keyIndex = v.indexOf(this.getStoreGateKey())) != -1) {
- // v is null - requested datatype name doesn't exists in the current
- // event -
- // if keyIndex is -1 it means the current
- // store gate key doesn't exists in the current event (for a datatype
- // which exists in the current event)
- // previous event(s) are being drawn and this colouring function
- // won't work for them but only for the current event
-
- // constant colour index is used purely as modifier so as all datatypes
- // coloured by colletictions don't start at the same colour ...
- keyIndex += constantColor;
- for (int i = 0; i < numData; i++) {
- color[i] = (byte) col[keyIndex % numColors];
- }
- } else {
- logger.debug("colorByCollection(): can't colour by collection");
- }
-
- } // colorByCollection() ------------------------------------------------
-
- /**
- * Colour another class by association. This class is providing the colour,
- * we assign colours from the local class to the target using col[] and id[][].
- *
- * @param col target class colour array
- * @param id association array from this class to the target class
- * @param unconnectedColor colour for unconnected hits
- * @param sharedColor colour for shared hits
- */
- protected void colorByAssociation(AData target, int[][] id,
- byte unconnectedColor, byte sharedColor) {
-
- // All hits are unconnected by default
- for (int i=0; i<target.color.length; i++) {
- target.color[i] = unconnectedColor;
- }
-
- if (id == null) return;
-
- // Loop over drawn objects in this class, then colour the other elements
- // that are associated. i iterates over the drawn items, j is the true
- // index and k refers to an associated item in the target class, with true
- // index l.
- for (int i=0; i<numDraw; i++) {
- int j = listdl[i];
-
- if (id[j] != null) {
- for (int k = 0; k < id[j].length; k++) {
- int l = target.getIndexFromId(id[j][k]);
-
- if (l < 0) continue;
-
- if (target.color[l] != unconnectedColor) {
- // If item l was already connected, that means it is shared
- target.color[l] = sharedColor;
- } else {
- // Assign associated item l the colour of item j in the local class
- target.color[l] = this.color[j];
- }
- }
- }
- }
- } // colorByAssociation() -----------------------------------------------
-
- protected void setColor(int index, byte color) {
- if (index >= 0 && index < this.color.length) {
- this.color[index] = color;
- } else {
- logger.debug(getClass().getName() + ": Set color for data with index = " + index);
- }
- }
-
- protected void setColor(byte color) {
- for (int i = 0; i < this.color.length; i++) {
- this.color[i] = color;
- }
- }
-
- protected void colorBy(int[] coloringVariable) {
- int numColors = parameterStore.get("HitColors", "Number").getI();
-
- numColors = Math.min(7, numColors);
- int[] col = parameterStore.getArray("HitColors", "C1", numColors);
-
- for (int i = 0; i < numData; i++) {
- color[i] = (byte) col[coloringVariable[i] % numColors];
- }
- }
-
- protected void colorBy(String colorGroup, int[] coloringVariable) {
- int numColors = parameterStore.get(colorGroup, "Number").getI();
-
- numColors = Math.min(7, numColors);
- int[] col = parameterStore.getArray(colorGroup, "C1", numColors);
-
- for (int i = 0; i < numData; i++) {
- color[i] = (byte) col[coloringVariable[i] % numColors];
- }
- }
-
- protected void colorBy(float[] Pt) {
- int numColors = parameterStore.get("HitColors", "Number").getI();
-
- numColors = Math.min(7, numColors);
- int[] col = parameterStore.getArray("HitColors", "C1", numColors);
- for (int i = 0; i < numData; i++) {
- int icol = 0;
- if (Math.abs(Pt[i]) < 2) {
- icol = 4; //lichtblauw
- } else if (Math.abs(Pt[i]) < 4) {
- icol = 2; //blauw
- } else if (Math.abs(Pt[i]) < 10) {
- icol = 5; //paars
- } else if (Math.abs(Pt[i]) < 40) {
- icol = 3; //oranje
- } else {
- icol = 0; //rood
- }
- color[i] = (byte) col[icol];
- }
- }
-
- public String getName() {
- return getParameterGroup();
- }
-
- public String getStoreGateKey() {
- return storeGateKey;
- }
-
- // x y from rho phi
- protected void calculateXY(float[] rho, float[] phi, float[] x, float[] y) {
- for (int i = 0; i < x.length; ++i) {
- x[i] = (float) (rho[i] * Math.cos(phi[i]));
- y[i] = (float) (rho[i] * Math.sin(phi[i]));
- }
- }
-
- /** Calculate rho phi from x y */
- protected void calculateRhoPhi(float[] x, float[] y, float[] rho, float[] phi) {
- // [2007-07-20] method is again always called from AData.makeDrawList()
- // but reference to primary vertex is removed, it's not taken into account now
- // double[] pVtx = Atlantis.getEventManager().getCurrentEvent().getPrimaryVertex();
- // double dx = x[i] - pVtx[0];
- // double dy = y[i] - pVtx[1];
-
- for (int i = 0; i < rho.length; i++) {
- double dx = x[i];
- double dy = y[i];
-
- rho[i] = (float) (Math.sqrt(dx * dx + dy * dy));
- phi[i] = (float) (Math.atan2(dy, dx));
- if (phi[i] < 0.) {
- phi[i] += AMath.TWO_PI;
- }
- }
- }
-
- /** Draw the data form this detector on this window and projection */
- public void draw(AWindow window, AGraphics ag, AProjection2D projection) {
- ag.draw(window.calculateDisplay(getUser(projection)));
- }
-
- /** Get the data from a projection without non linear transform applied.
- * @param projection
- * @return
- */
- protected ACoord getUserNoTransform(AProjection projection) {
- ACoord data = ACoord.NO_DATA;
- // don't use reflection as debugging is then harder
- if (projection instanceof AProjectionYX) {
- data = getYXUser();
- } else if (projection instanceof AProjectionFR) {
- data = getFRUser();
- } else if (projection instanceof AProjectionRZ) {
- data = getRZUser();
- } else if (projection instanceof AProjectionXZ) {
- data = getXZUser();
- } else if (projection instanceof AProjectionYZ) {
- data = getYZUser();
- } else if (projection instanceof AProjectionFZ) {
- data = getFZUser();
- } else if (projection instanceof AProjectionVP) {
- data = getVPUser();
- } else if (projection instanceof AProjection3D) {
- data = get3DUser();
- }
-
- return data;
- }
-
- /** Get the data form a projection with non linear transform applied. */
- protected ACoord getUser(AProjection2D projection) {
- currentProjection = projection;
- return projection.nonLinearTransform(getUserNoTransform(projection));
- }
-
- /** Should the polygon from this detector be drawn or filled? */
- protected int getDrawOrFill() {
- return AGraphics.DRAW;
- }
-
- /**
- * Prints info about association in which AData:index participates
- * (pick + n (navigate)
- * @param index int
- * @return String
- */
- public String navigate(int index) {
- StringBuilder temp = new StringBuilder();
- String assocKey = getFullName();
- String[] knownAssoc = event.getAssociationManager().getKnownAssociations(assocKey);
- temp.append(" associated to:\n");
- for (int i = 0; i < knownAssoc.length; i++) {
- AData source = eventManager.getCurrentEvent().get(knownAssoc[i]);
- if (source == null) continue;
- int[][] ass = event.getAssociationManager().get(assocKey, knownAssoc[i]);
- if (ass != null && ass[index] != null) {
- for (int x = 0; x < ass[index].length; x++) {
- temp.append(" " + knownAssoc[i] + " id: " + ass[index][x] +
- " index: " + source.getIndexFromId(ass[index][x]) + "\n");
- }
- }
- }
- return temp.toString();
-
- } // navigate() ---------------------------------------------------------
-
- private boolean isEMValidate(int inputValue) {
- if (inputValue > 65535) {
- String displayMessage = "isEM is a 16-bit binary data, maximum is 65535";
- AExceptionHandler.processException("warning", displayMessage.toString());
- return false;
- }
- return true;
- }
-
- // "1" means a wildcard, can be "0" or "1"
- private Vector<String> getPossibleValues(String bStr) {
- Vector<String> possibleValues = new Vector<String>();
- if (bStr.length() == 1) {
- possibleValues.add("0");
- if (bStr.charAt(0) == '1') {
- possibleValues.add("1");
- }
- } else {
- Vector<String> possibleValuesWithoutFirstChar = getPossibleValues(bStr.substring(1));
- for (int i = 0; i < possibleValuesWithoutFirstChar.size(); i++) {
- String str = possibleValuesWithoutFirstChar.get(i);
- possibleValues.add("0" + str);
- if (bStr.charAt(0) == '1') {
- possibleValues.add("1" + str);
- }
- }
-
- }
- return possibleValues;
- }
-
- private void cutIsEM(String text, int[] array, Vector<String> possibleValues) {
- int num = 0;
-
- for (int i = 0; i < numDraw; i++) {
- for (int j = 0; j < possibleValues.size(); j++) {
- String str = possibleValues.get(j);
- int value = Integer.parseInt(str, 2);
- if (array[listdl[i]] == value) {
- listdl[num++] = listdl[i];
- break;
- }
- }
- }
-
- numDraw = num;
- }
-
- /**
- * Track name + Track storeGateKey is returned according to selected
- * Track collection in InDet -> Track -> TrackCollection listbox
- * @return String
- */
- protected String getReconstructedTracks() {
- AData tracks = eventManager.getCurrentEvent().getTrackData("InDetTrack");
- String r = null;
- if (tracks != null) {
- r = tracks.getName() + tracks.getStoreGateKey();
- }
-
- return r;
-
- } // getReconstructedTracks() ---------------------------------------------
-
- /**
- * Jet + Jet storeGateKey is returned according to selected
- * Jet collection in ATLAS -> Jet -> JetCollection listbox
- * @return String
- */
- protected String getJets() {
- AData jets = eventManager.getCurrentEvent().getJetData();
- String r = null;
- if (jets != null) {
- r = jets.getName() + jets.getStoreGateKey();
- }
-
- return r;
-
- } // getJets() ----------------------------------------------------------
-
- /**
- * RVx + RVx storeGateKey is returned according to selected
- * vertex collection in InDet -> RecVertex -> VerteCollection listbox
- * @return String
- */
- protected String getRVx() {
- AData rvx = eventManager.getCurrentEvent().getRVxData();
- String r = null;
- if (rvx != null) {
- r = rvx.getName() + rvx.getStoreGateKey();
- }
-
- return r;
-
- } // getRVx() ----------------------------------------------------------
-
- protected AData getObjectCollection(String type) {
- return eventManager.getCurrentEvent().getData(type);
- }
-
- /**
- * Cluster + Cluster storeGateKey is returned according to selected
- * Cluster collection in Calo -> Cluster -> Cluster listbox
- * @return String
- */
- protected String getClusters() {
- AData clusters = eventManager.getCurrentEvent().getClusterData();
- String r = null;
- if (clusters != null) {
- r = clusters.getName() + clusters.getStoreGateKey();
- }
-
- return r;
-
- } // getClusters() ------------------------------------------------------
-
- public int[] getDrawList() {
- return listdl;
-
- } // getDrawList() ------------------------------------------------------
-
- /** Apply eta+-deltaEta cut to points (e.g. S3D) */
- protected void cutEta(float[] rho, float[] z)
- {
- AParameter par = parameterStore.get("CutsATLAS", "CutEta");
- boolean useEtaCut = par.getStatus();
-
- if(useEtaCut)
- {
- double etaCut = Math.abs(par.getD());
- double etaMid = parameterStore.get("CutsATLAS", "EtaMiddle").getD();
- double etaLower = etaMid - etaCut;
- double etaUpper = etaMid + etaCut;
- int num = 0;
-
- for(int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
- double eta = AParameterUtilities.eta(z[list], rho[list]);
-
- if(eta - etaLower > 1.0e-6 && etaUpper - eta > 1.0e-6)
- listdl[num++] = list;
- }
- numDraw = num;
- }
- }
-
-
- /** Apply eta+-deltaEta cut to lines perpendicular to beam axis */
- protected void cutEtaDRho(float[] rho, float[] z, float[] drho)
- {
- AParameter par = parameterStore.get("CutsATLAS", "CutEta");
- boolean useEtaCut = par.getStatus();
-
- if(useEtaCut)
- {
- double etaCut = Math.abs(par.getD());
- double etaMid = parameterStore.get("CutsATLAS", "EtaMiddle").getD();
- double etaLowerCut = etaMid - etaCut;
- double etaUpperCut = etaMid + etaCut;
- int num = 0;
-
- for(int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
- double eta1 = AParameterUtilities.eta(z[list], rho[list] + drho[list]);
- double eta2 = AParameterUtilities.eta(z[list], rho[list] - drho[list]);
- double etaLower = Math.min(eta1, eta2);
- double etaUpper = Math.max(eta1, eta2);
-
- if(etaUpper - etaLowerCut > 1.0e-6
- && etaUpperCut - etaLower > 1.0e-6)
- listdl[num++] = list;
- }
- numDraw = num;
- }
- }
-
- /** Apply eta+- deltaEta cut to lines parallel to beam axis */
- protected void cutEtaDZ(float[] rho, float[] z, float[] dz)
- {
- AParameter par = parameterStore.get("CutsATLAS", "CutEta");
- boolean useEtaCut = par.getStatus();
-
- if(useEtaCut)
- {
- double etaCut = Math.abs(par.getD());
- double etaMid = parameterStore.get("CutsATLAS", "EtaMiddle").getD();
- double etaLowerCut = etaMid - etaCut;
- double etaUpperCut = etaMid + etaCut;
- int num = 0;
-
- for(int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
- double etaLower = AParameterUtilities.eta(z[list] - dz[list], rho[list]);
- double etaUpper = AParameterUtilities.eta(z[list] + dz[list], rho[list]);
-
- if(etaUpper - etaLowerCut > 1.0e-6
- && etaUpperCut - etaLower > 1.0e-6)
- listdl[num++] = list;
- }
- numDraw = num;
- }
- }
-
- /** apply eta+-deltaeta cut to lines (e.g. TRT) */
- protected void cutEtaDEta(float[] eta, float[] deta)
- {
- AParameter par = parameterStore.get("CutsATLAS", "CutEta");
-
- if(!par.getStatus())
- return;
- double etaCut = Math.abs(par.getD());
- double etaMid = parameterStore.get("CutsATLAS", "EtaMiddle").getD();
- double etaLowerCut = etaMid - etaCut;
- double etaUpperCut = etaMid + etaCut;
- int num = 0;
-
- for(int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
- double etaLower = eta[list] - deta[list];
- double etaUpper = eta[list] + deta[list];
-
- if(etaUpper - etaLowerCut > 1.0e-6
- && etaUpperCut - etaLower > 1.0e-6)
- listdl[num++] = list;
- }
- numDraw = num;
-
- }
-
-
-
- /**
- *
- * @param sourceDatatype name of the datatype according to
- * which the cut is being done
- * @param beingCutDatatype name of the datatype which is
- * being cut
- * @param cutOption integer value of the cut option in GUI
- */
- protected void cutByAssociationTo(String sourceDatatype,
- String beingCutDatatype, int cutOption)
- {
- if(cutOption == 0)
- {
- // SA select all
- // do nothing, draw everything
- return;
- }
-
- AEvent ev = eventManager.getCurrentEvent();
- AData source = ev.get(sourceDatatype);
- int[][] assoc = event.getAssociationManager().get(beingCutDatatype, sourceDatatype);
- if (assoc == null || source == null) {
- AData being = ev.get(beingCutDatatype);
- String screenName;
- if(being!=null)screenName= being.getNameScreenName();
- else screenName="null";
- logger.warn(screenName + " - null (" + beingCutDatatype + " - "
- + sourceDatatype +") association, nothing to draw");
- // if 'connected' or 'unconnected' is selected and association
- // or datatype to associate with doesn't exist, draw nothing
- // (numDraw = 0)
- numDraw = 0;
- return;
- }
-
- if(cutOption == 1)
- {
- // SC select connected
- int num = 0;
- // first remove those not connected to anything
- for(int i = 0; i < numDraw; i++)
- {
- if(assoc[listdl[i]] != null)
- {
- listdl[num++] = listdl[i];
- }
- }
- numDraw = num;
- // if tracks exist apply cuts to them
- numDraw = source.cutByAssociation(numDraw, listdl, assoc);
- }
- else if(cutOption == 2)
- {
- // SU select unconnected
- int num = 0;
- for(int i = 0; i < numDraw; i++)
- {
- if(assoc[listdl[i]] == null)
- {
- listdl[num++] = listdl[i];
- }
- }
- numDraw = num;
- }
-
- } // cutByAssociationTo() -----------------------------------------------
-
-
-
- private int cutByAssociation(int numDraw, int[] listdl, int[][] id)
- {
- // aaargh danger modifies input listdl
- makeDrawList();
- boolean[] drawn = isDrawn();
- int num = 0;
-
- for(int i = 0; i < numDraw; i++)
- {
- int list = listdl[i];
- if(id[list] != null)
- {
- for(int j = 0; j < id[list].length; ++j)
- {
- int inverse = indexFromId.get(id[list][j]);
- if(inverse != NO_INVERSE && drawn[inverse])
- listdl[num++] = list;
- break;
- }
- }
- }
- numDraw = num;
- return numDraw;
- }
-
- /**
- * return graphics attributes corresponding to layer =0 frame layer =1 hits
- * or tracks type=0 noise type=1 non-noise
- */
- public ADrawParameters getDrawParameters(int layer, int type)
- {
- boolean draw = true;
- int singleColor = -1;
- int size = 10;
- int lineWidth = 1;
- int symbol = 0;
- int frameWidth = 0;
- boolean forceSymbols = false;
- int minSize = 0;
-
- AParameter forceSymbolsPar = parameterStore.getUnknown(PARAMETER_GROUP, "ForceSymbols");
- AParameter symbolSize = parameterStore.getUnknown(PARAMETER_GROUP, "SymbolSize");
- AParameter symbolType = parameterStore.getUnknown(PARAMETER_GROUP, "Symbol");
- AParameter lineWidthPar = parameterStore.getUnknown(PARAMETER_GROUP, "LineWidth");
-
- if(forceSymbolsPar != null)
- {
- forceSymbols = forceSymbolsPar.getStatus();
- if(forceSymbols && symbolSize != null)
- minSize = Math.max(symbolSize.getI(), 1);
- }
-
- if(symbolSize != null)
- size = symbolSize.getI();
- if(symbolType != null)
- symbol = symbolType.getI();
- if(lineWidthPar != null)
- lineWidth = lineWidthPar.getI();
- //for etmiss, line width scaled by energy by using the stroke setting
- if(lineWidth<=0)
- lineWidth = 1;
-
- if(type == 0)
- {
- AParameter noiseSymbolType = parameterStore.getUnknown(PARAMETER_GROUP, "Noise");
-
- if(noiseSymbolType != null && noiseSymbolType.getStatus())
- {
- AParameter noiseSymbolSize = parameterStore.getUnknown(PARAMETER_GROUP, "NoiseSize");
- AParameter noiseWidth = parameterStore.getUnknown(PARAMETER_GROUP, "NoiseWidth");
-
- if(noiseSymbolSize != null)
- size = noiseSymbolSize.getI();
- if(noiseWidth != null)
- lineWidth = noiseWidth.getI();
- symbol = noiseSymbolType.getI();
- }
- else
- {
- AParameter noiseWidth = parameterStore.getUnknown(PARAMETER_GROUP, "NoiseWidth");
-
- if(noiseWidth != null && noiseWidth.getStatus())
- lineWidth = noiseWidth.getI();
- }
- }
-
- if(layer == 0)
- {
- AParameter frameWidthPar = parameterStore.getUnknown(PARAMETER_GROUP, "FrameWidth");
- if(parameterStore.get(PARAMETER_GROUP, "Frame")!=null)
- {
- boolean drawFrame = parameterStore.get(PARAMETER_GROUP, "Frame").getStatus();
- singleColor = parameterStore.get(PARAMETER_GROUP, "Frame").getI();
- //only draw frames for Grey/BW color maps if is selected to draw frames
- if(drawFrame && AColorMap.drawFrames())
- {
- if(frameWidthPar != null)
- frameWidth = frameWidthPar.getI();
- }
- }
- }
- return new ADrawParameters(draw, singleColor, size, lineWidth,
- frameWidth, symbol, forceSymbols, minSize, getDrawOrFill());
- }
-
- /** Provide an array of indices with increasing a,
- * used e.g. by coloring.
- * @param a
- * @return
- */
- protected int[] indexBy(double[] a)
- {
- int[] index = new int[a.length];
-
- for(int i = 0; i < a.length; i++)
- index[i] = i;
- // this is only cosmetic improvement in appearance so if input data too
- // large simply return null
- if(a.length > 1000)
- return index;
-
- for(int i = 0; i < a.length - 1; i++)
- for(int j = i + 1; j < a.length; j++)
- if(a[index[i]] > a[index[j]])
- {
- int temp = index[i];
- index[i] = index[j];
- index[j] = temp;
- }
- return index;
- }
-
- /**
- * Colour items in this class by the associated class that is given by
- * association. The difference with the method colorByAssociation is that
- * colorBy is called on the target class, while colorByAssociation is called
- * on the source class of the colour. (i.e. colour hits by tracks invokes
- * AHitData.colorBy("Tracks"), calling ATrackData.colourByAssociation(...)
- * internally.
- *
- * @param otherClass source class for the colours
- */
- protected void colorBy(String otherClass)
- {
- AData source = eventManager.getCurrentEvent().get(otherClass);
- byte unconnected = (byte) parameterStore.get(PARAMETER_GROUP, "Unconnected").getI();
- if(source != null)
- {
- byte shared = (byte) parameterStore.get(PARAMETER_GROUP, "Shared").getI();
- String assocKey = getFullName();
- int[][] assoc = event.getAssociationManager().get(otherClass, assocKey);
- source.makeDrawList();
- source.color();
- source.colorByAssociation(this, assoc, unconnected, shared);
-
- }
- else
- {
- /*
- * given association doesn't exist. for instance, there are only
- * hits in the event file and nothing to associate them with.
- * if some 'association colouring' (e.g. colour by reconstructed
- * track) is selected in that case, the items appear all in
- * 'unconnected' colour. another option is to colour them in
- * constant colour, simply by calling only colorByConstant();
- */
- for(int i = 0; i < numData; i++)
- {
- color[i] = (byte) unconnected;
- }
- }
-
- } // colorBy() ----------------------------------------------------------
-
- protected void colorByObjects()
- {
- // initially set all with unconnected color, connected will be changed later
- byte unconnectedColor = (byte) parameterStore.get(PARAMETER_GROUP, "Unconnected").getI();
- setColor(unconnectedColor);
- String[] objectList = new String[] {"Jet", "BJet", "TauJet", "Photon", "Electron", "Muon"};
- for(int i=0; i<objectList.length; ++i)
- {
- if (parameterStore.get("Data", objectList[i]).getStatus())
- colorByObject(getObjectCollection(objectList[i]));
- }
- }
-
- private void colorByObject(AData objectData)
- {
- if(objectData == null)
- {
- return;
- }
-
- AEnumeratorParameter listBox = (AEnumeratorParameter) parameterStore.get(getName(), getName() + "Collections");
- String selectedCollection = listBox.getCurrentText();
- if(!("All".equals(selectedCollection) || "None".equals(selectedCollection)))
- {
- String assName = getName();
- if(getName().indexOf("Track") >= 0)
- assName = "Track";
- AAssociation assoc = event.getAssociationManager().getAssociation(objectData.getName()+objectData.getStoreGateKey(), assName);
- if(assoc != null)
- {
- if(!(assoc instanceof AObjectsAssociation))
- {
- logger.warn(getClass().getName() + ": no objects association is found!");
- return;
- }
- int[][] associatedIndex = ((AObjectsAssociation) assoc).getData();
- String[] associatedKey = ((AObjectsAssociation) assoc).getKey();
-
- // if currently selected collection is included in associatedKey, show associations
- // otherwise using the color set for unconnected cluster/track
- int objectIndex = 0;
- for(int i=0; i<associatedKey.length;)
- {
- // objectIndex is the index of the associated object (e.g. Electron)
- // associatedIndex[objectIndex][] contain the index of the associated Cluster/Track
- if ("none".equals(associatedKey[i]))
- {
- i++;
- objectIndex++;
- }
- else
- {
- if (associatedKey[i].equals(selectedCollection))
- for(int j=0; j<associatedIndex[objectIndex].length; ++j)
- setColor(associatedIndex[objectIndex][j], objectData.getColor()[objectIndex]);
- i+=associatedIndex[objectIndex++].length;
- }
- }
- }
- }
- }
-
- /**
- * The same as name, but if it's multiple collection datatype, the full
- * name is getName() + getStoreGateKey()
- * @return String
- */
- public String getFullName()
- {
- String k = this.getStoreGateKey();
- String full = this.getName() + (k != null ? k : "");
- return full;
- }
-
- public int getIdFromIndex(int index)
- {
- return id[index];
- }
-
- // sets the color of each hit
- protected final void color()
- {
- // standard scheme
- internalColor();
- int[][] temp = AListManager.getInstance().getColorMapping(this);
- int[] index = temp[0];
- int[] c = temp[1];
- // now add in colors specified in lists
-
- for(int i = 0; i < index.length; ++i)
- if(c[i] >= 0)
- color[index[i]] = (byte) c[i];
- int others = AListManager.getInstance().getColorOfOthers();
- // need to check if this data could have been picked
- // so that coloring of hits by STr works even if STr
- // is not in list because it wasn't on....
- if(others >= 0 && parameterStore.get("Data", getName()).getStatus())
- {
- boolean[] inList = new boolean[numData];
- for(int i = 0; i < index.length; ++i)
- inList[index[i]] = true;
-
- for(int i = 0; i < numData; ++i)
- if(!inList[i])
- color[i] = (byte) others;
- }
-
-
-
- }
-
-
- /** Type = e.g. noise/good */
- public int[] getType(int[] dl)
- {
- return new int[dl.length];
- }
-
- // get data representation in user space in different projections
- // empty by default
- protected ACoord getYXUser()
- {
- return ACoord.NO_DATA;
- }
-
- protected ACoord getRZUser()
- {
- return ACoord.NO_DATA;
- }
-
- protected ACoord getYZUser()
- {
- return ACoord.NO_DATA;
- }
-
- protected ACoord getXZUser()
- {
- return ACoord.NO_DATA;
- }
-
- protected ACoord get3DUser()
- {
- return ACoord.NO_DATA;
- }
-
- protected ACoord getUserUser()
- {
- return ACoord.NO_DATA;
- }
-
- protected ACoord getUserUser2()
- {
- return ACoord.NO_DATA;
- }
-
- protected ACoord getFRUser()
- {
- return ACoord.NO_DATA;
- }
-
- protected ACoord getFZUser()
- {
- return ACoord.NO_DATA;
- }
-
- protected ACoord getVPUser()
- {
- return ACoord.NO_DATA;
- }
-
- public int getNumTypes()
- {
- return 1;
- }
-
-
- /** The only method from AListProcessor interface. */
- @Override
- public Action[] getActions(Collection nodes)
- {
- return new Action[0];
- } // getActions() -------------------------------------------------------
-
- /**
- * Function to split a list of items seperated by -
- */
- public String[] splitItems(String origItems)
- {
- char[] origItemsChar = origItems.toCharArray();
- int origItemsLength = origItems.length();
- int spacePosition=0, noOfItems=0, count=0;
- //calculate the number of items
- for(int i=0;i<origItemsLength;i++)
- if((i!=0 && origItemsChar[i]=='-') || (i==origItemsLength-1 && origItemsChar[i]!='-'))
- noOfItems++;
- //split up the array into newItems
- if(noOfItems>0)
- {
- //string array to hold individual items
- String[] newItems=new String[noOfItems];
- for(int i=0;i<origItemsLength;i++)
- {
- if(i==0 && origItemsChar[i]=='-')
- spacePosition=i+1;//ignore first'-'
- else if(i==origItemsLength-1 && origItemsChar[i]!='-')
- {
- //store the text from previous '-' upto end if doesn't end with '-'
- newItems[count]=origItems.substring(spacePosition,i+1);
- spacePosition=i+1;
- count++;
- }
- else if(origItemsChar[i]=='-' && i!=0)
- {
- //store the text from previous '-' upto current '-'
- newItems[count]=origItems.substring(spacePosition,i);
- spacePosition=i+1;
- count++;
- }
- }
- return newItems;
- }
- else
- return null;
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/event/AEpsImageProducer.java b/graphics/AtlantisJava/src/atlantis/event/AEpsImageProducer.java
deleted file mode 100644
index eef4e9615f1..00000000000
--- a/graphics/AtlantisJava/src/atlantis/event/AEpsImageProducer.java
+++ /dev/null
@@ -1,117 +0,0 @@
-package atlantis.event;
-
-import java.io.File;
-import java.io.IOException;
-
-import atlantis.utils.*;
-import atlantis.canvas.ACanvas;
-import atlantis.graphics.encoders.AImageEncoder;
-import java.awt.Dimension;
-
-
-/**
- * Implements ANewEventListener and creates EPS files
- * upon each newEvent call. A scale factor allows to e.g. produce thumbnails by
- * scaling down image. The image producer works in two modes:
- * a) If no file name is given, a file name will be generated from run and event
- * number. In case the output file exists, no file is created but a warning is written out.
- * b) If a file name is given, a temporary file is generated first, and then
- * renamed to the given file name. If renaming fails, a warning is written out
- * and the temporary file is deleted.
- *
- * @author Sebastian Boeser
- */
-
-public class AEpsImageProducer extends AImageProducer
-{
- // the logger
- private static final ALogger logger = ALogger.getLogger(AEpsImageProducer.class);
-
- // Our image encode
- private final AImageEncoder imageEncoder = new AImageEncoder();
-
- /**
- * Fully qualified constructor,
- * intializing all the attributes and check the parameters validity
- * @param dir the directory in which to save all the files
- * @param size the dimensions of the images
- * @param scale the factor by which to scale the images
- * @param fileName if not null, that file will be overwritten for each event
- * @throws InstantiationException if we fail to create the object
- */
- public AEpsImageProducer(String dir, Dimension size, double scale, String fileName) throws InstantiationException
- {
- super(dir, size, scale, fileName);
- }
-
- /**
- * Called whenever a new event appears. Store an EPS in the directory,
- * either with a generated file name (no overwrite) or with a fixed file name (overwrite)
- * @param event the event from which to generate the EPS
- */
- public void newEvent(AEvent event)
- {
-
- //If auto had been set for size (height is negative), get height from Canvas
- if (imageSize.height < 0) imageSize.setSize(imageSize.width, ACanvas.getCanvas().getRespectiveHeight(imageSize.width));
-
- //Create the file to write the data into
- File outFile;
- //If we don't have a fixed file name,
- //generate a unique one based on run- and event number
- if (fixedFileName==null){
-
- //Now construct all the full path for the file we want to save
- String outFileName = String.format("%s%s%s.eps",directory,
- System.getProperty("file.separator"),
- getEventFileName(event));
-
- // Create file handles to the file and check if it exists
- outFile = new File(outFileName);
- //Do not overwrite any existing files
- if (outFile.exists()) {
- logger.warn("File "+ outFileName +" already exists - will not overwrite");
- return;
- }
- //otherwise generate a temporary file first,
- //then move it in place later
- } else {
- //make a temporary file in the final directory
- try {
- outFile = File.createTempFile(filePrefix+"_", ".eps",directory);
- } catch (IOException ex) {
- logger.warn("Failed to create temporary file in "+directory.getAbsolutePath());
- return;
- }
- }
-
- //Now try saving the acquired data,
- //and if it shall go to a fixed file, move it there
- try {
- imageEncoder.saveEPS(imageSize.width, imageSize.height, outFile);
-
- //move to fixed file name if requested
- if (fixedFileName != null){
-
- //Get a handle to the final destination
- File fixedFile = new File(directory,fixedFileName);
-
- //delete target if exits
- if (fixedFile.exists() && (!fixedFile.delete()))
- throw new IOException("Failed to delete existing file "+fixedFile.getAbsolutePath());
-
- //And move the new file in place
- if (!outFile.renameTo(fixedFile))
- throw new IOException("Failed to rename temporary file to "+fixedFile.getAbsolutePath());
- }
- } catch (IOException ioe) {
- //If we fail, throw a warning
- logger.warn("Could not save EPS files for history\n"+ioe.toString());
- } finally {
- //In any case, delete the pngFile, if it was just temporary
- if (fixedFileName != null) outFile.delete();
- }
-
-
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/event/AEvent.java b/graphics/AtlantisJava/src/atlantis/event/AEvent.java
deleted file mode 100755
index beeae482f16..00000000000
--- a/graphics/AtlantisJava/src/atlantis/event/AEvent.java
+++ /dev/null
@@ -1,1051 +0,0 @@
-package atlantis.event;
-
-import java.util.ArrayList;
-import java.util.Collection;
-import java.util.HashMap;
-import java.util.Hashtable;
-import java.util.Iterator;
-import java.util.List;
-import java.util.Map;
-import java.util.Vector;
-import java.util.TreeMap;
-import java.util.LinkedHashMap;
-import java.util.Set;
-
-import atlantis.list.AListManager;
-import atlantis.output.ALogInterface;
-import atlantis.output.AOutput;
-import atlantis.parameters.AEnumeratorParameter;
-import atlantis.parameters.APar;
-import atlantis.parameters.AParameterUtilities;
-import atlantis.projection.AProjection;
-import atlantis.projection.AProjectionFR;
-import atlantis.projection.AProjectionFZ;
-import atlantis.projection.AProjectionLegoPlot;
-import atlantis.projection.AProjectionVP;
-import atlantis.projection.AProjectionYX;
-import atlantis.utils.AAtlantisException;
-import atlantis.utils.ALogger;
-import atlantis.utils.AMath;
-import atlantis.data.*;
-import atlantis.globals.AGlobals;
-
-/**
- * AEvent is the Container for an ATLAS physics event.
- * It is identified by deriving from AEventInfo and holds a map of all the
- * data that is available in the event.
- *
- */
-public class AEvent extends AEventInfo
-{
- private static ALogger logger = ALogger.getLogger(AEvent.class);
-
- // container with all datatypes within the event
- private Map<String,AData> data = new HashMap<String,AData>();
- // storegate keys for collections-aware datatypes
- // Use parameterized type but keep Hashtable and Vector instead of HashMap
- // and ArrayList until I work out if thread safety is an issue. - Ben 31/1/11
- private Hashtable<String,Vector<String>> collections = new Hashtable<String,Vector<String>>();
-
- private AAssociationManager assocmgr = new AAssociationManager();
-
- private static APar parameterStore = APar.instance();
-
- /**
- * @param eventNumber the event number
- * @param runNumber the run number
- * @param dateTime the date and time of the event
- * @param sourceName the name of the event source
- * @param lumiBlock the lumiBlock number
- */
- public AEvent(String eventNumber, String runNumber, String dateTime, String sourceName, String lumiBlock, String eventProperties) {
-
- //Initialize event information
- super(Integer.parseInt(eventNumber), Integer.parseInt(runNumber), dateTime, sourceName, lumiBlock, eventProperties);
-
- } // AEvent() -----------------------------------------------------------
-
- /**
- * @return the hashtable of available collections
- */
- public Hashtable<String,Vector<String>> getCollections(){
- return collections;
- } // getCollections() ---------------------------------------------------
-
-
- public void add(AData dataSet) throws AAtlantisException
- {
- String name = dataSet.getClass().getName();
-
- int index = name.lastIndexOf('.');
- if(index >= 0 && index < name.length() - 1)
- {
- name = name.substring(index + 1);
- }
-
- // remove the "A" and "Data"
- name = name.substring(1, name.length() - 4);
- String newKey = dataSet.getStoreGateKey();
-
- if(newKey == null)
- {
- // no storegatekey comes with this dataset (datatype)
- // hash data shouldn't contain entry under sourceName key, if it does
- // the old one is replaced
- data.put(name, dataSet);
- }
- else
- {
- // just checking for the same key at the datatypes in the event
- if(data.containsKey(name + newKey))
- {
- String msg = "Error - datatype " + name + " with storeGateKey\n" +
- newKey + " already exists in this event.";
- AAtlantisException aaex = new AAtlantisException(msg);
- // Stuck the trace in the logging for good measure - AD
- logger.error("\n" + msg, aaex);
- throw aaex;
- }
- else
- {
- data.put(name + newKey, dataSet);
- // saving key of a particular sourceName (datatype)
- Vector<String> keys = new Vector<String>();
- if(collections.containsKey(name))
- {
- keys = collections.get(name);
- if(keys.contains(newKey))
- {
- String msg = "Previously read datatype " + name + "\n" +
- "(different collection) contained " +
- "storeGateKey " + newKey + ". Error.";
- AAtlantisException aaex = new AAtlantisException(msg);
- logger.error(msg, aaex);
- throw aaex;
- }
- else
- {
- keys.add(newKey);
- collections.put(name, keys);
- }
- }
- else
- {
- keys.add(newKey);
- collections.put(name, keys);
- }
- }
- }
-
- } // add() ---------------------------------------------------------------
-
-
-
-
-
- // < get<DATA_TYPE> methods > -------------------------------------------
-
-
- public AData get(String name)
- {
- return data.get(name);
- }
-
- public AData[] getData()
- {
- AData[] aData = new AData[data.size()];
- Collection<AData> collection = data.values();
- return collection.toArray(aData);
- }
-
-
- /**
- * AJetData getJetData()
- * returns collection of Jet datatype according to selected
- * collection (Jet storeGateKey) in ATLAS -> Jet -> Jet Collection
- * if 'all' (or 'none') is selected - returns null (no association will
- * be taken into account)
- * @return AJetData
- */
- public AJetData getJetData()
- {
- AEnumeratorParameter listBox =
- (AEnumeratorParameter) parameterStore.get("Jet", "JetCollections");
- String selectedKey = listBox.getCurrentText();
- if("All".equals(selectedKey) || "None".equals(selectedKey))
-{
- logger.debug("AEvent.getJetData(): " + selectedKey +
- " is selected in Jet->JetCollection, no association " +
- " to Jet is taken into account, null is returned");
- return null;
- }
- else
- {
- AJetData jet = (AJetData) data.get("Jet" + selectedKey);
- return jet;
- }
- }
-
-
- // can combine with the other methods (e.g. getClusterData)
- public AData getData(String type)
- {
- AEnumeratorParameter listBox =
- (AEnumeratorParameter) parameterStore.get(type, type+"Collections");
- String selectedKey = (listBox == null) ? "" : listBox.getCurrentText();
- if("All".equals(selectedKey) || "None".equals(selectedKey)) {
-
- logger.debug("AEvent.getData(String type): " + selectedKey +
- " is selected in " + type + "->" + type + " Collections, " +
- "no association to " + type + " is taken into account.");
-
- return null;
- }
- else
- {
- return data.get(type + selectedKey);
- }
- }
-
- /**
- * AClusterData getClusterData()
- * returns collection of Cluster datatype according to selected
- * collection (Cluster storeGateKey) in ATLAS -> Cluster -> Cluster Collection
- * if 'all' (or 'none') is selected - returns null (no association will
- * be taken into account)
- * @return AClusterData
- */
- public AClusterData getClusterData()
- {
- AEnumeratorParameter listBox =
- (AEnumeratorParameter) parameterStore.get("Cluster", "ClusterCollections");
- String selectedKey = listBox.getCurrentText();
- if ("All".equals(selectedKey) || "None".equals(selectedKey)) {
-
- logger.debug("AEvent.getClusterData(): " + selectedKey +
- " is selected in Cluster->ClusterCollection, no association " +
- " to Cluster is taken into account, null is returned");
-
- return null;
- }
- else
- {
- AClusterData cluster = (AClusterData) data.get("Cluster" + selectedKey);
- return cluster;
- }
- }
-
-
- /**
- * ATrackData getTrackData(String type)
- * type is InDetTrack, MuonTrack - the internal datatype sourceName for Track
- * returns collection of Track datatype according to selected
- * collection (Track storeGateKey) in InDet -> Track -> TrackCollection
- * if 'all' (or 'none') is selected - returns null (no association will
- * be taken into account)
- * @param type String
- * @return ATrackData
- */
- public ATrackData getTrackData(String type)
- {
- AEnumeratorParameter listBox =
- (AEnumeratorParameter) parameterStore.get(type, type + "Collections");
- String selectedKey = listBox.getCurrentText();
- if("All".equals(selectedKey) || "None".equals(selectedKey))
- {
- logger.debug("AEvent.getTrackData(" + type + "): " + selectedKey +
- " is selected in Track->TrackCollection, no association " +
- " to Track is taken into account, null is returned");
- return null;
- }
- else
- {
- ATrackData track = (ATrackData) data.get(type + selectedKey);
- return track;
- }
- }
-
-
- /**
- * ATrackData getTrackData(String type, String key)
- * returns specified collection of Track datatype if it exists
- * @param type String
- * @param key String
- * @return ATrackData
- */
- public ATrackData getTrackData(String type, String key)
- {
- Vector<String> keys = collections.get(type);
- if(keys == null) {
- logger.warn("AEvent: " + type + " datatype doesn't exist " +
- "in current event");
- return null;
- }
- else
- {
- if(keys.contains(key))
- {
- return (ATrackData) data.get(type + key);
- }
- else {
-
- logger.warn("AEvent: " + type + " datatype: storeGateKey " +
- key + " doesn't exist in current event");
- return null;
- }
- }
- }
-
-
-
-
- public ASTrData getSTrData()
- {
- return (ASTrData) data.get("STr");
- }
-
- public ASNPData getSNPData()
- {
- return (ASNPData) data.get("SNP");
- }
-
- public APixelClusterData getPixelClusterData()
- {
- return (APixelClusterData) data.get("PixelCluster");
- }
-
- public ASiClusterData getSiClusterData()
- {
- return (ASiClusterData) data.get("SiCluster");
- }
-
- public AS3DData getS3DData()
- {
- return (AS3DData) data.get("S3D");
- }
-
- public ATRTData getTRTData()
- {
- return (ATRTData) data.get("TRT");
- }
-
- public ALArData getLArData()
- {
- return (ALArData) data.get("LAr");
- }
-
- public ATILEData getTILEData()
- {
- return (ATILEData) data.get("TILE");
- }
-
- public AHECData getHECData()
- {
- return (AHECData) data.get("HEC");
- }
-
- public AFCALData getFCALData()
- {
- return (AFCALData) data.get("FCAL");
- }
-
- public AMBTSData getMBTSData()
- {
- return (AMBTSData) data.get("MBTS");
- }
-
- //Because some things need to access the data before the parameters are filled, another method
- //for accessing the data has been added. This method first checks the list of available storegate keys
- //and see's if there is one starting with MDT. As the dataType + storegatekey is hard coded into how
- //the hash map keys are created this should be a stable way of doing it. If there are multiple
- //results for the search, it then checks which one is currently selected by the user.
-
- public AMDTData getMDTData()
- {
- Vector<String> storeGateKeys = new Vector<String>();
- Set<String> keys = data.keySet();
- for(String entry : keys){
- if(entry.startsWith("MDT")){
- storeGateKeys.add(entry);
- }
- }
- if(storeGateKeys.size() == 1){
- return (AMDTData) data.get(storeGateKeys.get(0));
- }else{
-
- AEnumeratorParameter listBox =
- (AEnumeratorParameter) parameterStore.get("MDT", "MDTCollections");
- String selectedKey = listBox.getCurrentText();
- if("All".equals(selectedKey) || "None".equals(selectedKey))
- {
- logger.debug("AEvent.getMDTata(): " + selectedKey +
- " is selected in MDT->MDTCollection, no association " +
- " to MDT is taken into account, null is returned");
- return null;
-
- }
- else{
- AMDTData mdt = (AMDTData) data.get("MDT" + selectedKey);
- return mdt;
- }
-
-
- }
-
- }
-
- //See description for getMDTData
-
- public ARPCData getRPCData()
- {
-
- Vector<String> storeGateKeys = new Vector<String>();
- Set<String> keys = data.keySet();
- for(String entry : keys){
- if(entry.startsWith("RPC")){
- storeGateKeys.add(entry);
- }
- }
- if(storeGateKeys.size() == 1){
- return (ARPCData) data.get(storeGateKeys.get(0));
- }else{
-
- AEnumeratorParameter listBox =
- (AEnumeratorParameter) parameterStore.get("RPC", "RPCCollections");
- String selectedKey = listBox.getCurrentText();
- if("All".equals(selectedKey) || "None".equals(selectedKey))
- {
- logger.debug("AEvent.getRPCData(): " + selectedKey +
- " is selected in RPC->RPCCollection, no association " +
- " to RPC is taken into account, null is returned");
- return null;
-
- }
- else{
- ARPCData rpc = (ARPCData) data.get("RPC" + selectedKey);
- return rpc;
- }
-
-
- }
- }
- //See description for getMDTData
-
- public ATGCData getTGCData()
- {
- Vector<String> storeGateKeys = new Vector<String>();
- Set<String> keys = data.keySet();
- for(String entry : keys){
- if(entry.startsWith("TGC")){
- storeGateKeys.add(entry);
- }
- }
- if(storeGateKeys.size() == 1){
- return (ATGCData) data.get(storeGateKeys.get(0));
- }else{
-
- AEnumeratorParameter listBox =
- (AEnumeratorParameter) parameterStore.get("TGC", "TGCCollections");
- String selectedKey = listBox.getCurrentText();
- if("All".equals(selectedKey) || "None".equals(selectedKey))
- {
- logger.debug("AEvent.getTGCData(): " + selectedKey +
- " is selected in TGC->TGCCollection, no association " +
- " to TGC is taken into account, null is returned");
- return null;
-
- }
- else{
- ATGCData tgc = (ATGCData) data.get("TGC" + selectedKey);
- return tgc;
- }
-
-
- }
- }
- //See description for getMDTData
-
- public ACSCDData getCSCDData()
- {
- Vector<String> storeGateKeys = new Vector<String>();
- Set<String> keys = data.keySet();
- for(String entry : keys){
- if(entry.startsWith("CSC")){
- storeGateKeys.add(entry);
- }
- }
- if(storeGateKeys.size() == 1){
- return (ACSCDData) data.get(storeGateKeys.get(0));
- }else{
-
- AEnumeratorParameter listBox =
- (AEnumeratorParameter) parameterStore.get("CSC", "CSCCollections");
- String selectedKey = listBox.getCurrentText();
- if("All".equals(selectedKey) || "None".equals(selectedKey))
- {
- logger.debug("AEvent.getCSCData(): " + selectedKey +
- " is selected in CSC->CSCCollection, no association " +
- " to CSC is taken into account, null is returned");
- return null;
-
- }
- else{
- ACSCDData csc = (ACSCDData) data.get("CSC" + selectedKey);
- return csc;
- }
-
-
- }
- }
-
- public ASVxData getSVxData()
- {
- return (ASVxData) data.get("SVx");
- }
-
- public ARVxData getRVxData()
- {
- AEnumeratorParameter listBox =
- (AEnumeratorParameter) parameterStore.get("RVx", "RVxCollections");
- String selectedKey = listBox.getCurrentText();
- if ("All".equals(selectedKey)) {
-
- logger.debug("AEvent.getRVxData(): " + selectedKey +
- " is selected in InDet->RecVertex, no association " +
- " to vertex is taken into account, null is returned");
-
- return null;
- } else if ("None".equals(selectedKey)) {
- // Return collection without for backwards compatibility
- return (ARVxData) data.get("RVx");
- } else
- {
- ARVxData rvx = (ARVxData) data.get("RVx" + selectedKey);
- return rvx;
- }
- }
-
- public ATrigS3DData getTrigS3DData()
- {
- return (ATrigS3DData) data.get("TrigS3D");
- }
-
- public ALVL1TriggerTowerData getLvl1TriggerTowerData()
- {
- return (ALVL1TriggerTowerData) data.get("LVL1TriggerTower");
- }
-
- public ALVL1ResultData getLvl1ResultData()
- {
- return (ALVL1ResultData) data.get("LVL1Result");
- }
-
- public ALVL1JetElementData getLvl1JetElementData()
- {
- return (ALVL1JetElementData) data.get("LVL1JetElement");
- }
-
- public ATriggerInfoData getTriggerInfoData()
- {
- return (ATriggerInfoData) data.get("TriggerInfo");
- }
-
- /**
- * This function returns the names currently selected for a certain collection
- * which has its data draw status set to true
- * @param collectionType String sourceName of the collection
- * @return string of collection names length 0 if none in event
- */
- public String[] getActiveCollectionNames(String collectionType)
- {
- //LVL1Result is not on the Data list as it is always on hence check this first
- boolean collectionStatus = collectionType.equals("LVL1Result");
- if(!collectionStatus)
- collectionStatus=parameterStore.get("Data", collectionType).getStatus();
- if (collectionStatus)
- {
- return getCollectionNames(collectionType);
- }
- else
- return new String[0];
- }
-
- /**
- * This function returns the names currently selected for a certain collection
- * @param collectionType String sourceName of the collection
- * @return string of collection names length 0 if none in event
- */
- public String[] getCollectionNames(String collectionType)
- {
- String[] col;
- Vector<String> keys = collections.get(collectionType);
- if (keys != null)
- {
- String[] collec = keys.toArray(new String[keys.size()]);
- AEnumeratorParameter listBox = (AEnumeratorParameter) parameterStore.get(collectionType, collectionType + "Collections");
- String currentSelection = listBox.getCurrentText();
- int count=0;
- //count how many items in list
- for (int i = 0; i < collec.length; i++)
- {
- if ("All".equals(currentSelection) || collec[i].equals(currentSelection))
- count++;
- }
- col=new String[count];
- count=0;
- //now save items into string array
- for (int i = 0; i < collec.length; i++)
- {
- if ("All".equals(currentSelection) || collec[i].equals(currentSelection))
- {
- col[count] = collectionType + collec[i];
- count++;
- }
- }
- return col;
- }
- else
- return new String[0];
- }
-
- // </ get<DATA_TYPE> methods > --------------------------------------------
-
- public List<ACalorimeterData> getCalorimeters()
- {
- List<ACalorimeterData> v = new ArrayList<ACalorimeterData>();
- Iterator<AData> i = data.values().iterator();
- while(i.hasNext())
- {
- AData data = i.next();
- if(data instanceof ACalorimeterData)
- {
- ACalorimeterData calorimeter = (ACalorimeterData) data;
- if(parameterStore.get("Data", calorimeter.getCalorimeterName()).getStatus() &&
- (parameterStore.getUnknown("Det", calorimeter.getCalorimeterName() + "Fill") == null
- || parameterStore.get("Det", calorimeter.getCalorimeterName() + "Fill").getStatus()))
- {
- v.add(calorimeter);
- }
- }
- }
- return v;
-
- } // getCalorimeters() ---------------------------------------------------
-
-
-
- public List<AData> getHitsAndTracks(AProjection projection)
- {
- int mode = parameterStore.get(projection.getName(), "Mode").getI();
- String[][] det = new String[0][0];
- String[] simTr = new String[0];
- String[] recTr = new String[0];
- String[] hits = new String[0];
- String[] aod = new String[0];
-
- if(mode == 0 || projection instanceof AProjectionVP
- || projection instanceof AProjectionLegoPlot)
- {
- simTr = new String[] { "STr", "SNP", "SMTr" };
- recTr = new String[] { "InDetSegment", "MuonSegment", "G4Step",
- "InDetTrack", "MuonTrack" };
-
- aod = new String[] {"CompositeParticle", "BJet", "TauJet", "Photon", "Electron", "Muon" };
-
- if(parameterStore.get("InDetDrawingOrder", "SpacePoints").getI() == 0)
- {
- hits = new String[] {"UserHit", "RVx", "TRT", "SiCluster",
- "SiClusterRDO", "S3D", "PixelCluster", "PixelRDO", "TrigS3D",
- "MDT", "CSCD", "CSC", "RPC", "R3D", "TGC", "T3D", "SVx",
- "Jet", "EmTauROI", "Particle", "Cluster", "ETMis",
- "JetROI", "MuonROI", "LVL1TriggerTower", "LVL1JetElement"};
- }
- else
- {
- hits = new String[] {"UserHit", "RVx", "TRT", "SiCluster",
- "SiClusterRDO", "TrigS3D", "S3D", "PixelCluster", "PixelRDO",
- "MDT", "CSCD", "CSC", "RPC", "R3D", "TGC", "T3D", "SVx",
- "Jet", "EmTauROI", "Particle", "Cluster", "ETMis",
- "JetROI", "MuonROI", "LVL1TriggerTower", "LVL1JetElement"};
- }
- }
- else if(projection instanceof AProjectionYX
- || projection instanceof AProjectionFR)
- {
- if(mode >= AProjectionYX.MODE_MDT_INNER && mode <= AProjectionYX.MODE_MDT_OUTER)
- {
- simTr = new String[] { "SMTr", "SMTr" };
- recTr = new String[] { "MuonTrack", "MuonSegment" };
- if(mode == AProjectionYX.MODE_MDT_INNER)
- {
- hits = new String[] { "MDT", "CSCD", "CSC" };
- }
- else
- {
- hits = new String[] { "MDT" };
- }
- }
- else if(mode < AProjectionYX.MODE_MDT_INNER)
- {
- simTr = new String[] { "SMTr", "SMTr" };
- recTr = new String[] { "MuonTrack", "MuonSegment" };
- hits = new String[] { "TGC", "T3D" };
- }
- }
- else if(projection instanceof AProjectionFZ)
- {
- if(mode >= 4)
- {
- simTr = new String[] { "SMTr", "SMTr" };
- recTr = new String[] { "MuonTrack", "MuonSegment" };
- hits = new String[] { "MDT" };
- }
- else
- {
- simTr = new String[] { "SMTr", "SMTr" };
- recTr = new String[] { "MuonTrack", "MuonSegment" };
- hits = new String[] { "RPC", "R3D" };
- }
- }
-
- if(parameterStore.get("InDetDrawingOrder", "SpacePointsTracks").getI() == 0)
- {
- // Simulated tracks, reconstructed tracks, hits
- det = new String[][] { simTr, recTr, hits, aod };
- }
- else if(parameterStore.get("InDetDrawingOrder", "SpacePointsTracks").getI() == 1)
- {
- // Simulated tracks, hits, reconstructed tracks
- det = new String[][] { simTr, hits, recTr, aod };
- }
- else
- {
- // Reconstructed tracks, hits, simulated tracks
- det = new String[][] { recTr, hits, simTr, aod };
- }
-
- AEnumeratorParameter listBox = null;
- List<AData> v = new ArrayList<AData>();
- for(int i = 0; i < det.length; ++i)
- {
- for(int j = 0; j < det[i].length; ++j)
- {
- if(collections.containsKey(det[i][j]))
- {
- Vector<String> keys = collections.get(det[i][j]);
- String[] array;
- array = keys.toArray(new String[keys.size()]);
- // GUI listbox sourceName datatype + "Collections"
- listBox = (AEnumeratorParameter) parameterStore.get(det[i][j],
- det[i][j] + "Collections");
- String currentSelection = listBox.getCurrentText();
- for(int c = 0; c < array.length; c++)
- {
- if("All".equals(currentSelection) ||
- array[c].equals(currentSelection))
- {
- AData a = data.get(det[i][j] + array[c]);
- processDataSet(v, a);
- }
- }
- }
- else
- {
- AData a = data.get(det[i][j]);
- processDataSet(v, a);
- }
- }
- }
- return v;
-
- } // getHitsAndTracks() -------------------------------------------------
-
-
- private static void processDataSet(List<AData> v, AData a)
- {
- if(a != null)
- {
- if(parameterStore.getUnknown("Data", a.getName()) != null &&
- parameterStore.get("Data", a.getName()).getStatus() &&
- (parameterStore.getUnknown("Det", a.getName() + "Fill") == null ||
- parameterStore.get("Det", a.getName() + "Fill").getStatus()))
- {
- v.add(a);
- }
- }
-
- } // processDataSet() ---------------------------------------------------
-
-
-
- public List<ACalorimeterData> getElectromagneticCalorimeters()
- {
- List<ACalorimeterData> v = new ArrayList<ACalorimeterData>();
- Iterator<AData> i = data.values().iterator();
- while(i.hasNext())
- {
- AData a = i.next();
- if(a instanceof ALArData || a instanceof AFCALData)
- {
- v.add((ACalorimeterData)a);
- }
- }
- return v;
-
- } // getElectromagneticCalorimeters() ------------------------------------
-
-
-
- public List<ACalorimeterData> getHadronicCalorimeters()
- {
- List<ACalorimeterData> v = new ArrayList<ACalorimeterData>();
- Iterator<AData> i = data.values().iterator();
- while(i.hasNext())
- {
- AData a = i.next();
- if(a instanceof ATILEData || a instanceof AHECData
- || a instanceof AFCALData || a instanceof AMBTSData)
- {
- v.add((ACalorimeterData)a);
- }
- }
- return v;
-
- } // getHadronicCalorimeters() -------------------------------------------
-
-
-
- /**
- * setPrimaryVertex() called during event finalisation
- * sets Event: XVtx, YVtx, ZVtx in the internal parameter store
- * (in GUI: Projection -> eta-phi -> XVtx, YVtx, ZVtx)
-
- * 1) gets values from RecVertex (RVx) - see conditions in ARVxData class
- * 2) gets values from simulated vertices with highest pt sum (STr)
- * 3) if above fail, sets 0.0, 0.0, 0.0
- *
- * (taking primary vertex from reconstructed tracks was removed)
- *
- */
- public void setPrimaryVertex()
- {
- double[] vtx = null;
-
- // (1)
- if(getRVxData() != null)
- {
- // RVx data exists, try to retrieve primary vertex information
- vtx = getRVxData().getPrimaryVertex();
- }
- // (2)
- if(vtx == null && getSTrData() != null)
- {
- // STr data exists, try to get primary vertex information
- int vtxIndex = getSTrData().getMaxSumPtVertex();
-
- //retrieve that vertex
- vtx = getSVxData().getVertex(vtxIndex);
-
- //Completely unclear to me... why 4?
- if(vtx[0] * vtx[0] + vtx[1] * vtx[1] > 4.)
- {
- logger.info("replacing primary with first");
- logger.info(" was " + vtx[0] + " " + vtx[1] + " " + vtx[2]);
- vtx = getSVxData().getVertex(0);
- if(vtx[0] * vtx[0] + vtx[1] * vtx[1] > 4.)
- {
- vtx[0] = 0.;
- vtx[1] = 0.;
- vtx[2] = 0.;
- }
- logger.info(" now is " + vtx[0] + " " + vtx[1] + " " + vtx[2]);
- }
- }
-
- if(vtx == null)
- {
- vtx = new double[] { 0.0, 0.0, 0.0 };
- }
-
- parameterStore.get("Event", "XVtx").setD(vtx[0]);
- parameterStore.get("Event", "YVtx").setD(vtx[1]);
- parameterStore.get("Event", "ZVtx").setD(vtx[2]);
-
- AOutput.append("\n\nPrimary vertex set for projection " +
- AMath.PHI + AMath.ETA + ":\n" +
- " XVtx = " + String.format("%.5f",vtx[0]) + " cm\n" +
- " YVtx = " + String.format("%.5f",vtx[1]) + " cm\n" +
- " ZVtx = " + String.format("%.5f",vtx[2]) + " cm\n", ALogInterface.NORMAL);
-
- } // setPrimaryVertex() -------------------------------------------------
-
-
-
- /**
- * Finalize event construction:
- * - finalize all data objects
- * - set primary vertex
- * - calculate the number of hits on a track
- * - create associations
- * - update collections
- * @return the event
- */
- public AEvent finalizeEvent()
- {
-
- // setting primary vertex must be done before finalizeConstruction()
- // happens on datatypes!
- setPrimaryVertex();
-
- Iterator<AData> iter = data.values().iterator();
- while(iter.hasNext())
- {
- AData data = iter.next();
- if(data instanceof AData)
- {
- try {
- ((AData) data).finalizeConstruction();
- } catch ( Exception e ){
- //Get sourceName of the object where the error occured
- String ObjName = ((AData)data).getFullName();
- logger.error("Exception while finalizing construction of "+ObjName,e);
- AOutput.append("\n\nError while constructing " + ObjName +"\n", ALogInterface.WARNING);
- AOutput.append(" - object will not be shown!\n",ALogInterface.WARNING);
- iter.remove();
-
- }
- }
- }
-
- if (!AGlobals.isAtlantisHeadless()) {
- AListManager.getInstance().resetAndPreserveInvisible();
- }
-
- // are there any RVx read in from the event file? if so, cut the tracks
- // which form vertices (when drawn as helices) to the reconstructed
- // vertices.
- ARVxData rvxData = this.getRVxData();
- if(rvxData != null)
- {
- rvxData.cutTracksToRVx(this);
- }
-
- assocmgr.correct();
-
- return this;
-
- } // AEvent finalizeEvent() ---------------------------------------------
-
-
- /**
- * Returns information about datatypes and number of items datatypes in
- * the current event
- * First item of the result array is the datatype sourceName followed
- * by ":<storeGateKey>" if that exists for a datatype and second item is
- * integer number (numData).
- * The array is alphabetically sorted.
- *
- * @return String[][]
- */
- public String[][] getInfo()
- {
- AData[] sources = getData();
- Map<String,String> m = new LinkedHashMap<String,String>();
- m.clear();
- for(int i = 0; i < sources.length; i++)
- {
- String sg = sources[i].getStoreGateKey();
- String a = sources[i].getNameScreenName();
- a += sg != null ? ":" + sg : "";
- m.put(a, String.valueOf(sources[i].getNumData()));
- }
-
- TreeMap<String,String> tm = new TreeMap<String,String>(String.CASE_INSENSITIVE_ORDER);
- tm.clear();
- tm.putAll(m);
-
- String[][] s = new String[tm.size()][2];
- int i = 0;
- for(Iterator<String> iter = tm.keySet().iterator() ; iter.hasNext() ; i++)
- {
- String key = iter.next();
- s[i][0] = key;
- s[i][1] = tm.get(key);
- }
-
- return s;
-
- } // getInfo() -----------------------------------------------------------
-
-
- /**
- * Returns information about datatypes and number of items datatypes in
- * the current event drawn for all event data, and data passing cuts
- * First item of the result array is the datatype sourceName followed
- * by ":<storeGateKey>" if that exists for a datatype and second/third items are
- * integer number (numData, numDraw).
- * The array is alphabetically sorted.
- *
- * @return String[][]
- */
- public String[][] getInfoDraw()
- {
- AData[] sources = getData();
- Map<String,String> m = new LinkedHashMap<String,String>();
- m.clear();
- Map<String,String> mDraw = new LinkedHashMap<String,String>();
- mDraw.clear();
-
- for(int i = 0; i < sources.length; i++)
- {
- String sg = sources[i].getStoreGateKey();
- String a = sources[i].getNameScreenName();
- a += sg != null ? ":" + sg : "";
- m.put(a, String.valueOf(sources[i].getNumData()));
- mDraw.put(a, String.valueOf(sources[i].getNumDraw()));
- }
-
- TreeMap<String,String> tm = new TreeMap<String,String>(String.CASE_INSENSITIVE_ORDER);
- tm.clear();
- tm.putAll(m);
- TreeMap<String,String> tmDraw = new TreeMap<String,String>(String.CASE_INSENSITIVE_ORDER);
- tmDraw.clear();
- tmDraw.putAll(mDraw);
-
-
- String[][] s = new String[tm.size()][3];
- int i = 0;
- for(Iterator<String> iter = tm.keySet().iterator() ; iter.hasNext() ; i++)
- {
- String key = iter.next();
-
- s[i][0] = key;
- s[i][1] = tm.get(key);
- s[i][2] = tmDraw.get(key);
- }
-
- return s;
-
- } // getInfoDraw() -----------------------------------------------------------
-
-
- /**
- * Get coordinates of event vertex.
- *
- * The coordinates are obtained from the parameter store rather than
- * from the event itself, since the vertex position can be changed by the
- * user through the GUI.
- *
- * @return (x,y,z) of vertex
- */
- public double[] getPrimaryVertex()
- {
- return AParameterUtilities.getPrimaryVertex();
- }
-
- public AAssociationManager getAssociationManager() {
- return assocmgr;
- }
-
-
-} // class AEvent ------------------------------------------------------------
diff --git a/graphics/AtlantisJava/src/atlantis/event/AEventInfo.java b/graphics/AtlantisJava/src/atlantis/event/AEventInfo.java
deleted file mode 100644
index 0fe0aca7a01..00000000000
--- a/graphics/AtlantisJava/src/atlantis/event/AEventInfo.java
+++ /dev/null
@@ -1,212 +0,0 @@
-package atlantis.event;
-
-import java.text.ParseException;
-import java.text.SimpleDateFormat;
-import java.util.Comparator;
-import java.util.Date;
-
-/**
- * The AEventInfo class summarizes the information that uniquely identifies a event.
- * It also provides an "equals" function allowing to compare if two events are identical.
- * @author sboeser
- */
-public class AEventInfo {
-
- // number of the run of the event
- private final long runNumber;
- // event number in a run
- private final long eventNumber;
- // Athena time when XML event file was made in JiveXML
- private final String dateTime;
- // the name of the source this event was coming from (filename, servername, ...)
- private final String sourceName;
- // the lumiBlock number
- private final String lumiBlock;
- // Any additional eventProperties that may be important
- private final String eventProperties;
- // any additional info that is needed
-
- //the date format to use with the event info
- public final static SimpleDateFormat dateTimeFormat = new SimpleDateFormat("yyyy.MM.dd HH:mm:ss");
-
- /**
- * Fully qualified constructor
- * @param run the run number
- * @param event the event number
- * @param time the date and time of the event
- */
- AEventInfo(long event, long run, String time, String source, String lumiBlock, String eventProperties){
- this.runNumber = run;
- this.eventNumber = event;
- this.dateTime = time != null ? time : "n/a";
- this.sourceName = source != null ? source : "n/a";
- this.lumiBlock = checkString(lumiBlock);
- this.eventProperties = checkString(eventProperties);
- }
-
- /**
- * Copy constructor
- * @param the evenInfo object to copy
- */
- AEventInfo(AEventInfo event){
- this(event.getEventNumber(),event.getRunNumber(),
- event.getDateTime(),event.getSourceName(),
- event.getLumiBlock(),event.getEventProperties());
- }
-
- /**
- * @return the run number
- */
- public long getRunNumber() {
- return runNumber;
- } // getRunNumber() -----------------------------------------------------
-
- /**
- * @return the event number
- */
- public long getEventNumber(){
- return eventNumber;
- } // getEventNumber() ---------------------------------------------------
-
-
- /**
- * @return the date and time of the event
- */
- public String getDateTime() {
- return dateTime;
- } // getEventNumber() ---------------------------------------------------
-
- /**
- * @return the name of the event source
- */
- public String getSourceName() {
- return sourceName;
- } // getSourceName() ----------------------------------------------------------
-
- /**
- * @return the lumiBlock
- */
- public String getLumiBlock() {
- return lumiBlock;
- } // getSourceName() ----------------------------------------------------------
-
- /**
- * @return the eventProperties
- */
- public String getEventProperties() {
- return eventProperties;
- } // getSourceName() ----------------------------------------------------------
-
-
-
- /**
- * Performs test to see if there is a valid value for send string
- */
- private String checkString(String receivedString){
- String temp;
- if(receivedString == null || receivedString.endsWith("-1")){
- temp = "default";
- }else{
- temp = receivedString;
- }
- return temp;
- }
-
-
-
-
- /**
- * Check whether this event is identical to the event described by info
- * @param info the event information for the event to compare to
- * @return true if identical
- */
- // FIXME: Should take Object as argument. Need to consider how to deal with
- // subclasses like AEvent.
- public boolean equals(AEventInfo info){
- //check if info is valid
- if (info == null) return false;
- //Only compare run- and event number and time, source may be different
- return ((info.getRunNumber() == runNumber)&&
- (info.getEventNumber() == eventNumber));
- }
-
-// Need to override hashCode() to guarantee correct behaviour of equals()
-@Override
-public int hashCode() {
- final int prime = 31;
- int result = 1;
- result = prime * result + (int) (eventNumber ^ (eventNumber >>> 32));
- result = prime * result + (int) (runNumber ^ (runNumber >>> 32));
- return result;
-}
-
-
-/**
- * Implementation of Comparable interface - sort events by run- and event number
- */
- public static class RunEventNumberComparator implements Comparator {
-
- /**
- * @param o1 , o2 the two eventInfo objects to compare
- * @return negative/zero/positive int if o1 is less/equal/larger than o2
- */
- public int compare(Object o1, Object o2) {
-
- /**
- * Cast to an event info object - if this fails, someone has mixed this with
- * another class in a collection and we better crash with ClassCastException than catch
- */
- AEventInfo info1 = (AEventInfo)o1;
- AEventInfo info2 = (AEventInfo)o2;
-
- //compare by run number first
- Long run = info1.getRunNumber();
- if (run.compareTo(info2.getRunNumber()) != 0)
- return run.compareTo(info2.getRunNumber());
-
- //otherwise return by event number
- Long event = info2.getEventNumber();
- return event.compareTo(info2.getEventNumber());
- }
- }
-
- /**
- * Implementation of Comparable interface - sort events by date and time
- */
- public static class DateTimeComparator implements Comparator {
-
- /**
- * @param o1 , o2 the two eventInfo objects to compare
- * @return negative/zero/positive int if o1 is less/equal/larger than o2
- */
- public int compare(Object o1, Object o2) {
-
- /**
- * Cast to an event info object - if this fails, someone has mixed this with
- * another class in a collection and we better crash with ClassCastException than catch
- */
- AEventInfo info1 = (AEventInfo)o1;
- AEventInfo info2 = (AEventInfo)o2;
-
- //return zero for events that are equal
- if (info1.equals(info2)) return 0;
-
- //Now get date and time objects
- Date date1 = null; Date date2=null;
- try {
- date1 = dateTimeFormat.parse(info1.getDateTime());
- date2 = dateTimeFormat.parse(info2.getDateTime());
- } catch (ParseException pex) {
- throw new ClassCastException("Parse exception when comparing dates");
- }
-
- //If there is not date assoicated with any of these, throw an exception
- if ((date1==null)||(date2==null))
- throw new ClassCastException("Could not parse valid date comparing "
- +info1.getDateTime()+" to "+info2.getDateTime());
-
- //Finally, compare the two dates
- return date1.compareTo(date2);
- }
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/event/AEventInfoPrinter.java b/graphics/AtlantisJava/src/atlantis/event/AEventInfoPrinter.java
deleted file mode 100644
index 174eed015a7..00000000000
--- a/graphics/AtlantisJava/src/atlantis/event/AEventInfoPrinter.java
+++ /dev/null
@@ -1,60 +0,0 @@
-package atlantis.event;
-
-import atlantis.globals.AGlobals;
-import atlantis.output.ALogInterface;
-
-/**
- * Print event information for each new event to the log pane
- * @author sboeser
- */
-public class AEventInfoPrinter implements ANewEventListener {
-
- private ALogInterface logPane = null;
-
- /**
- * Constructor with the log pane where the information shall be printed
- * @param output the output pane to which to write
- */
- public AEventInfoPrinter(ALogInterface output){
- logPane = output;
- }
-
- private void printEventInfo(AEvent event, ALogInterface dest)
- {
- //For Minerva just output name and coded event and run numbers
- //Not on canvas title, but teachers may want to see the number to help
- //with recognising difficult events
- if(AGlobals.instance().getSimpleOutput()>0)
- {
- String r = "\n" + event.getSourceName() +
- " (" + event.getRunNumber() + "00"+ event.getEventNumber() + ")\n";
- dest.append(r + "\n", ALogInterface.NORMAL);
- return;
- }
-
- int lineLen = 39;
- String r = "\n" + event.getSourceName() + "\n" +
- "run number: " + event.getRunNumber() +
- " event number: " + event.getEventNumber() + "\n" +
- "--------------------------------------\n";
-
- String[][] s = event.getInfo();
-
- for(int i = 0; i < s.length; i++)
- {
- r += String.format("%-"+lineLen+"s", s[i][0]) + ": " + s[i][1] + "\n";
- }
- dest.append(r + "\n", ALogInterface.NORMAL);
-
- } // printEventInfo() ---------------------------------------------------*/
-
- /**
- * For each new event print log information to the log pane
- * @param event the change event
- */
- public void newEvent(AEvent event) {
- //simply print it
- printEventInfo(event,logPane);
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/event/AEventManager.java b/graphics/AtlantisJava/src/atlantis/event/AEventManager.java
deleted file mode 100755
index ba5b27b035b..00000000000
--- a/graphics/AtlantisJava/src/atlantis/event/AEventManager.java
+++ /dev/null
@@ -1,319 +0,0 @@
-package atlantis.event;
-
-import atlantis.event.AEventSource.InvalidEventSourceException;
-import atlantis.event.AEventSource.NoMoreEventsException;
-import atlantis.event.AEventSource.ReadEventException;
-import atlantis.event.AEventSource.NavigationMode;
-import atlantis.event.oncrpc.AONCRPCEventSource;
-import atlantis.event.xmlrpc.AXMLRPCEventSource;
-import java.util.Vector;
-
-import atlantis.utils.ALogger;
-
-/**
- * All new physics events come into Atlantis via the AEventManager
- * The AEventManager may hold a list of event, has the index of the
- * current event int the list and informs its listeners about new events.
- * Only one event can be active at one time.
- *
- * @author sboeser
- */
-public class AEventManager
-{
- private final static ALogger logger = ALogger.getLogger(AEventManager.class);
- private static AEventManager instance;
-
- /** Private constructor for singleton. */
- private AEventManager() {}
-
- /** Get the singleton instance. */
- public synchronized static AEventManager instance() {
- if (instance==null) instance = new AEventManager();
- return instance;
- }
-
- //The current event source
- private AEventSource eventSource = null;
-
- //The current event - i.e. the last delivered by any event source
- private AEvent currentEvent = null;
-
- //A list of listeners for new events
- private Vector<ANewEventListener> NewEventListeners = new Vector<ANewEventListener>();
-
- //A list of listeners for new events sources
- private Vector<ANewEventSourceListener> NewEventSourceListeners = new Vector<ANewEventSourceListener>();
-
- /**
- * Return the currently active event
- * @return AEvent
- */
- public synchronized AEvent getCurrentEvent()
- {
- //simply return the current event
- return currentEvent;
- }
-
-
- /**
- * Set the event with the given index as the current event
- * @param index the index of the new event
- */
- private synchronized void setCurrentEvent(AEvent event)
- {
- //Now simply set the current event
- currentEvent = event;
- //Inform all listeners
- fireNewEvent(getCurrentEvent());
- }
-
-
- /**
- * @return the current active event source
- */
- public synchronized AEventSource getEventSource(){
- return eventSource;
- }
-
- /**
- * Set a new already constructed event source. Note that this constructor
- * does not throw InvalidEventSource exception as the AEventSource object
- * is already constructed.
- * @param source the AEventSource object
- */
- public synchronized void setEventSource( AEventSource source )
- {
- //Simply set the source and we are done
- eventSource = source;
- fireNewEventSource(getEventSource());
- }
-
-
- /**
- * Set the source given by name as new event source. If the event source is
- * not valid (e.g invalid file name) we rely on the constructor to fail, throwing
- * an InvalidEventSourceException. Thus, the old source is retained if the new one
- * can not be created.
- * @param sourceName the name of the source (e.g. file name, url, server name,...)
- * @throws InvalidEventSourceException
- */
- public synchronized void setEventSource(String sourceName) throws InvalidEventSourceException
- {
- //Make a nice string out of it
- String theSourceName = sourceName.toLowerCase().trim();
-
- // XMLRPC Server source given as "xmlrpc://server:port"
- if(theSourceName.startsWith("xmlrpc://")) {
- eventSource = new AXMLRPCEventSource(sourceName);
- // ONCRPC Server source given as "oncrpc://server[:port]"
- } else if(theSourceName.startsWith("oncrpc://")) {
- eventSource = new AONCRPCEventSource(sourceName);
- // Metwork sources possibilities
- // .xml, .zip or web directory containing event files
- } else if(theSourceName.startsWith("http://")) {
- // normal xml file
- if(theSourceName.endsWith(".xml")){
- eventSource = new AURLEventSource(sourceName);
- // zip file on the web
- } else if(theSourceName.endsWith(".zip")) {
- eventSource = new AZipEventSource(sourceName);
- //Anything else should be a web directory
- } else {
- eventSource = new AURLEventSource(sourceName);
- }
-
- // local disk access possibilities (.xml, .zip, .gz, .gzip)
- // event source starts with file://
- } else if(theSourceName.startsWith("file://")) {
- // normal xml file
- if (theSourceName.endsWith(".xml")) {
- eventSource = new AFileEventSource(sourceName);
- // normal zip file
- } else if (theSourceName.endsWith(".zip")) {
- eventSource = new AZipEventSource(sourceName);
- // compressed single xml file
- } else if (theSourceName.endsWith(".gz") || theSourceName.endsWith(".gzip")) {
- eventSource = new AFileEventSource(sourceName);
- } else {
- String msg = "Could not identify event source: "+sourceName;
- logger.error(msg);
- throw new InvalidEventSourceException(msg);
- }
- } else {
- String msg = "Could not identify event source: "+sourceName;
- logger.error(msg);
- throw new InvalidEventSourceException(msg);
- }
- fireNewEventSource(getEventSource());
- }
-
- /**
- * Sets event navigation mode: random, push, loop or sequential.
- * Throws InvalidEventSourceException if there is no source
- * or if it doesn't support the requested mode.
- * @throws InvalidEventSourceException
- */
- public synchronized void setNavigationMode(NavigationMode mode) throws InvalidEventSourceException
- {
- if(eventSource == null) throw new InvalidEventSourceException("Current event source is NULL");
-
- NavigationMode oldMode = eventSource.getNavigationMode();
-
- // check if we're really setting a new mode, or if
- // the user just clicked on the same button twice
- if(oldMode != mode) {
- if(eventSource.supportsNavigationMode(mode)) {
- eventSource.setNavigationMode(mode);
- fireNewEventSource(getEventSource());
- // go to the next event
- try {
- nextEvent();
- } catch (NoMoreEventsException nme) {
- String msg = "No more events from current source";
- logger.error(msg);
- } catch (ReadEventException re) {
- String msg = "Error while reading the event";
- logger.error(msg);
- }
- } else throw new InvalidEventSourceException("Current event source does not support the selected display mode");
- }
- }
-
- /**
- * Gets the current event navigation mode.
- * @return event navigation mode
- */
- public synchronized NavigationMode getNavigationMode() throws InvalidEventSourceException
- {
- if(eventSource == null) throw new InvalidEventSourceException("Current event source is NULL");
- return eventSource.getNavigationMode();
- }
-
- /**
- * Check if the current source supports a specific event navigation mode.
- * @param mode the requested event navigation mode
- * @return true if the event navigation mode is supported
- */
- public boolean supportseventNavigationMode(NavigationMode mode) throws InvalidEventSourceException
- {
- if(eventSource == null) throw new InvalidEventSourceException("Current event source is NULL");
- return eventSource.supportsNavigationMode(mode);
- }
-
- /**
- * Read the next event from the current event source.
- * Throws NoMoreEvents if there is none.
- * @throws NoMoreEventsException
- * @throws InvalidEventSourceException
- * @throws ReadEventException
- */
- public void nextEvent() throws NoMoreEventsException,
- InvalidEventSourceException,
- ReadEventException
- {
-
- // Check for valid event source.
- if (eventSource==null)
- throw new InvalidEventSourceException("Current event source is NULL");
-
- // Simply read next event from it.
- AEvent event = eventSource.nextEvent();
- setCurrentEvent(event);
-
- }
-
-
- /**
- * Read previous event from current event source.
- * Throws NoMoreEvents if there is none.
- * @throws NoMoreEventsException
- * @throws InvalidEventSourceException
- * @throws ReadEventException
- */
- public void previousEvent() throws NoMoreEventsException,
- InvalidEventSourceException,
- ReadEventException
- {
-
- // Check for valid event source.
- if (eventSource==null)
- throw new InvalidEventSourceException("Current event source is NULL");
-
- // Simply read previous event from it.
- setCurrentEvent(eventSource.previousEvent());
-
- }
-
- /**
- * Add a new listener for newEvent incidents
- * @param listener to be added to list
- */
- public void addNewEventListener(ANewEventListener listener)
- {
- //Add this listener
- NewEventListeners.addElement(listener);
- //If there are already some events
- if (getCurrentEvent() == null) return;
- //Make the new listener aware of the current event
- listener.newEvent(getCurrentEvent());
- }
-
- /**
- * Remove a listener from the list.
- * @param listener to be removed from list
- */
- public void removeNewEventListener(ANewEventListener listener)
- {
- //Remove this listener
- NewEventListeners.removeElement(listener);
- }
-
- /**
- * Call stateChanges of all newEvent listeners
- * @param event the new event passed on to all listeners
- */
- private synchronized void fireNewEvent(AEvent event)
- {
-
- // Loop over all listeners
- for ( ANewEventListener listener : NewEventListeners )
- // give them the new event
- listener.newEvent(event);
- }
-
- /**
- * Add a new listener for newEventSource incidents
- * @param listener to be added to list
- */
- public void addNewEventSourceListener(ANewEventSourceListener listener)
- {
- //Add this listener
- NewEventSourceListeners.addElement(listener);
- //If there are already some events
- if (getEventSource() == null) return;
- //Make the new listener aware of the current event
- listener.newEventSource(getEventSource());
- }
-
- /**
- * Remove a listener from the list
- * @param listener to be removed from list
- */
- public void removeNewEventSourceListener(ANewEventSourceListener listener)
- {
- NewEventSourceListeners.removeElement(listener);
- }
-
- /**
- * Call eventSourceChanged of all event source changes listeners
- * @param eventSource the new event source
- */
- private synchronized void fireNewEventSource(AEventSource eventSource)
- {
- // Loop over all listeners
- for ( ANewEventSourceListener listener : NewEventSourceListeners )
- // give them the new event
- listener.newEventSource(eventSource);
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/event/AEventSource.java b/graphics/AtlantisJava/src/atlantis/event/AEventSource.java
deleted file mode 100755
index 01fef1e727d..00000000000
--- a/graphics/AtlantisJava/src/atlantis/event/AEventSource.java
+++ /dev/null
@@ -1,114 +0,0 @@
-package atlantis.event;
-
-/**
- * Basic interface class to be implemented by all event sources
- * @author sboeser
- */
-
-public interface AEventSource
-{
-
- /***
- * Exception that is thrown if an event can not be read from this source
- */
- public class ReadEventException extends AEventSourceException
- {
- //Default constructor
- public ReadEventException() { super(); }
- //Constructor with a string
- public ReadEventException( String message ){ super( message ); }
- //Constructor with a description and cause
- public ReadEventException( String message, Throwable cause ){ super( message, cause ); }
- }
-
- /***
- * Exception that is thrown if there are no more events from this source
- */
- public class NoMoreEventsException extends AEventSourceException
- {
- //Default constructor
- public NoMoreEventsException() { super(); }
- //Constructor with a string
- public NoMoreEventsException( String message ){ super( message ); }
- //Constructor with a description and cause
- public NoMoreEventsException( String message, Throwable cause ){ super( message, cause ); }
- }
-
- /**
- * Exception that is thrown if the event source is invalid
- */
- public class InvalidEventSourceException extends AEventSourceException
- {
- //Default constructor
- public InvalidEventSourceException() { super(); }
- //Constructor with a string
- public InvalidEventSourceException( String message ){ super( message ); }
- //Constructor with a description and cause
- public InvalidEventSourceException( String message, Throwable cause ){ super( message, cause ); }
- }
-
- /**
- * Read the next event from the source, throws NoMoreEvents
- * if no next event is available
- * @return the next event
- * @throws NoMoreEventsException
- * @throws InvalidEventSourceException
- * @throws ReadEventException
- */
- AEvent nextEvent() throws NoMoreEventsException,
- InvalidEventSourceException,
- ReadEventException;
-
- /**
- * Read the previous event from the source, throws NoMoreEvents
- * if no previous event is available
- * @return the previous event
- * @throws NoMoreEventsException
- * @throws InvalidEventSourceException
- * @throws ReadEventException
- */
- AEvent previousEvent() throws NoMoreEventsException,
- InvalidEventSourceException,
- ReadEventException;
- /**
- * Get a string uniquly identifying the event source, e.g the URL, the zip
- * archive name or the server:port string
- * @return a unique name describing the source
- */
- String getSourceName();
-
- /***
- * Enum that stores the possible event navigation modes
- */
- public enum NavigationMode {
- SEQUENTIAL, //go through events in their natural order
- LOOP, //start from beginning when reaching the end
- RANDOM, //take a random event
- PUSH //event loop is driven from outside (see AServerXMLRPC)
- }
-
- /**
- * Get the event navigation mode for the current source.
- * @return current navigation mode
- */
- NavigationMode getNavigationMode();
-
- /**
- * Set the event navigation mode for the current source.
- * Throws InvalidEventSourceException if the current
- * source does not support the requested mode
- * @param mode requested event navigation mode
- * @throws InvalidEventSourceException if the mode is not supported
- */
- void setNavigationMode(NavigationMode mode) throws InvalidEventSourceException;
-
- /**
- * Checks whether the current event source supports
- * a particular display mode.
- * @return true if the mode is supported
- * @param mode requested event navigation mode
- */
- boolean supportsNavigationMode(NavigationMode mode);
-
-}
-
diff --git a/graphics/AtlantisJava/src/atlantis/event/AEventSourceException.java b/graphics/AtlantisJava/src/atlantis/event/AEventSourceException.java
deleted file mode 100644
index 94061279df3..00000000000
--- a/graphics/AtlantisJava/src/atlantis/event/AEventSourceException.java
+++ /dev/null
@@ -1,65 +0,0 @@
-
-package atlantis.event;
-
-/**
- * All exceptions occuring while attempting to read events shall be chaught
- * and converted into one of the three generic event source exceptions:
- *
- * -NoMoreEventsException: there is no next/previous event
- * -InvalidEventSourceException: the specified event source is invalid
- * -ReadEventException: there was an error reading in the event
- *
- * All three of them derive from AEventSourceException which provides printing methods.
- *
- * These three exceptions are then handed up to the GUI level, where they are treated
- * differently, depending on the current reading mode (e.g. NoMoreEvents can be ignored
- * when waiting for events to appear on a server, web-dir, etc..)
- *
- * @author sboeser
- */
-public class AEventSourceException extends Exception{
-
- //Default constructor
- public AEventSourceException() { super(); }
- //Constructor with a string
- public AEventSourceException( String message ){ super( message ); }
- //Constructor with a description and cause
- public AEventSourceException( String message, Throwable cause ){ super( message, cause ); }
-
- /**
- * Generates a string with the cause of this message and all causing ones
- * @return the generated string
- */
- public String getCauseMessages(){
-
- //Create the string buffer
- StringBuffer msg = new StringBuffer();
-
- //Add all cause messages starting from this exception
- addCauseMessage(this,msg);
-
- //return string
- return msg.toString();
- }
-
- /**
- * Recursively add cause messages to string buffer
- * @param t the exception
- * @param msg the string buffer
- */
- private void addCauseMessage(Throwable t, StringBuffer msg){
-
- //Add the name of the exception class
- msg.append(t.getClass().getName());
- //Add the description of the exception
- msg.append(": ");
- msg.append(t.getMessage());
-
- //Check if there has been a cause given
- if (t.getCause() != null){
- //Add cause messages in next line
- msg.append("\n caused by ");
- addCauseMessage(t.getCause(),msg);
- }
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/event/AFileEventSource.java b/graphics/AtlantisJava/src/atlantis/event/AFileEventSource.java
deleted file mode 100644
index 51625ac86d3..00000000000
--- a/graphics/AtlantisJava/src/atlantis/event/AFileEventSource.java
+++ /dev/null
@@ -1,309 +0,0 @@
-package atlantis.event;
-
-import atlantis.data.AEventFromXML;
-import java.io.File;
-import java.io.FilenameFilter;
-import java.io.InputStream;
-
-import java.util.Arrays;
-import java.util.zip.GZIPInputStream;
-import java.util.Random;
-
-import java.io.FileInputStream;
-import java.io.FileNotFoundException;
-import java.io.IOException;
-
-
-/**
- * Read a single event from an XML file in a directory
- * @author sboeser
- */
-public class AFileEventSource extends ABufferedEventSource
-{
-
- //The current directory
- private File directory = null;
-
- //A filter for valid files in the current directory
- private final XMLFilenameFilter filter = new XMLFilenameFilter();
-
- // needed for random mode
- private Random randomGenerator = new Random();
-
- /**
- * Constructor with file name given
- * @param sourceName
- * @throws AEventSource.InvalidEventSourceException
- */
- public AFileEventSource(String sourceName) throws AEventSource.InvalidEventSourceException
- {
- // check if it's a well-formed event path
- if(sourceName.startsWith("file://")) {
- // strip file:// from the sourceName
- sourceName = sourceName.substring(7);
- //Check if the current file name is valid
- directory = new File(sourceName);
-
- //Check that we can read that file or directory
- if (!directory.canRead())
- throw new InvalidEventSourceException("Can not read from "+sourceName);
- } else throw new InvalidEventSourceException(sourceName+" is not in the form file://path");
- }
-
- /**
- * @return the full name of the file or directory
- */
- public String getSourceName() {
- return directory.getAbsolutePath();
- }
-
- /**
- * @param mode event navigation mode
- * @return true if the requested mode is supported by this source
- */
- public boolean supportsNavigationMode(NavigationMode mode) {
- if(mode == NavigationMode.SEQUENTIAL ||
- mode == NavigationMode.RANDOM ||
- mode == NavigationMode.LOOP)
- return true;
- return false;
- }
-
- /**
- * Read an event from the current file and directory
- * @return the event
- * @throws ReadEventException
- * @throws InvalidEventSourceException
- */
- protected AEvent readEventFromFile(File file) throws ReadEventException,
- InvalidEventSourceException
- {
- //Reassemble full file name
- String FullFileName = file.getAbsolutePath();
-
- try{
-
- //Use full path and name to specify the file
- InputStream is = new FileInputStream(FullFileName);
-
- //Check if this might be a gzip stream
- if ((file.getName().toLowerCase().endsWith(".gz"))||
- (file.getName().toLowerCase().endsWith(".gzip"))){
-
- //Run through GZIPInput for decoding
- is = new GZIPInputStream(is);
- }
- //Read file from stream
- return AEventFromXML.read(is, file.getName());
-
- } catch( OutOfMemoryError oom ) {
-
- //Check if we can clear the event container
- if( getNumberOfEvents() > 0) clearEventContainer();
-
- //Run garbage collector
- System.gc();
-
- //Retry reading the event
- return readEventFromFile(file);
-
- } catch(FileNotFoundException fnfe){
- //rethrow
- throw new InvalidEventSourceException("File not found: "+FullFileName,fnfe);
- } catch(IOException ioe){
- //rethrow
- throw new ReadEventException("I/O error readding file: "+FullFileName,ioe);
- }
- }
-
- /**
- *Get a sorted list of files in the directory of the current file
- */
- private String[] getListOfFiles(){
-
- //get a list of files in the same directory using the filter
- String[] FileList = directory.list(filter);
-
- //Sort the list
- Arrays.sort(FileList);
-
- return FileList;
-
- }
-
- protected AEvent readRandom() throws ReadEventException, InvalidEventSourceException {
-
- //The file we want to pass on to the reading routine
- File file = null;
- //On the first encounter "directory" might be a file
- if (directory.isFile()){
- //set this as the file we want to read
- file = directory.getAbsoluteFile();
- //store its parent directory
- directory = file.getParentFile();
- } else {
- //Get a list of files
- String[] FileList = getListOfFiles();
- //Check there are more files
- if (FileList.length == 0)
- throw new InvalidEventSourceException("No valid files in directory "
- +directory.getAbsolutePath());
- //Loop over file list
- int iName = randomGenerator.nextInt(FileList.length);
-
- //Now get the new file
- file = new File(directory,FileList[iName]);
- }
-
- //Should now have a file in any case, try to read from it
- return readEventFromFile(file);
-
- }
-
-
- /**
- * Read the next event from the next XML file in the same directory
- * @return the next event
- * @throws NoMoreEventsException
- * @throws ReadEventException
- * @throws InvalidEventSourceException
- */
- public AEvent readNext(AEventInfo currentEvent) throws NoMoreEventsException,
- ReadEventException,
- InvalidEventSourceException
- {
- // if random mode is set, return a random event
- if(getNavigationMode() == NavigationMode.RANDOM) return readRandom();
-
- //The file we want to pass on to the reading routine
- File file = null;
- //On the first encounter "directory" might be a file
- if (directory.isFile()){
- //set this as the file we want to read
- file = directory.getAbsoluteFile();
- //store its parent directory
- directory = file.getParentFile();
- } else {
- //Get a list of files
- String[] FileList = getListOfFiles();
- //Check there are more files
- if (FileList.length == 0)
- throw new NoMoreEventsException("No valid files in directory "
- +directory.getAbsolutePath());
- //Loop over file list
- int iName = 0;
- //search for next entry that is lexicographically larger
- //taking first one if there is no current event to compare to
- while ((currentEvent != null ) &&
- (currentEvent.getSourceName().compareTo(FileList[iName]) >= 0)){
- //Go to next file
- ++iName;
- // if we have reached the end of the list
- if (iName == FileList.length) {
- // if in loop mode, go back to the first file
- if(getNavigationMode() == NavigationMode.LOOP) {
- iName = 0;
- break;
- }
- // if not in loop mode, abort
- else throw new NoMoreEventsException("No more files after"
- + currentEvent.getSourceName() + " in directory "+directory.getAbsolutePath());
- }
- }
-
- //Now get the new file
- file = new File(directory,FileList[iName]);
- }
-
- //Should now have a file in any case, try to read from it
- return readEventFromFile(file);
-
- }
-
- /**
- * Read the next event from the previous XML file in the same directory
- * @return the previous event
- * @throws NoMoreEventsException
- * @throws ReadEventException
- * @throws InvalidEventSourceException
- */
- public AEvent readPrevious(AEventInfo currentEvent) throws NoMoreEventsException,
- ReadEventException,
- InvalidEventSourceException
- {
- // in random mode there's no looking back
- if(getNavigationMode() == NavigationMode.RANDOM) throw new NoMoreEventsException("No more random events left in the buffer");
- //The file we want to pass on to the reading routine
- File file = null;
- //On the first encounter "directory" might be a file
- if (directory.isFile()){
- //set this as the file we want to read
- file = directory.getAbsoluteFile();
- //store its parent directory
- directory = file.getParentFile();
- } else {
- //Get a list fo files
- String[] FileList = getListOfFiles();
- //Check there are more files
- if (FileList.length == 0)
- throw new NoMoreEventsException("No valid files in directory "
- +directory.getAbsolutePath());
- //Loop over file list
- int iName = FileList.length-1;
- //search for next entry that is lexicographically smaller
- //taking last one if there is no current one to compare to
- while ((currentEvent != null) &&
- (currentEvent.getSourceName().compareTo(FileList[iName]) <= 0)){
- //Go to next file
- --iName;
- // if we have reached the end of the list
- if (iName < 0) {
- // if in loop mode, go to the last event
- if(getNavigationMode() == NavigationMode.LOOP) {
- iName = FileList.length - 1;
- break;
- }
- // if not in loop mode, abort
- else throw new NoMoreEventsException("No more files before"
- + currentEvent.getSourceName() + " in directory "+directory.getName());
- }
- }
-
- //Now get the new file
- file = new File(directory,FileList[iName]);
- }
-
- //Should now have a file in any case, try to read from it
- return readEventFromFile(file);
- }
-}
-/**
- * Filter helper class only accepting file names ending in .xml, .gz or .gzip
- * @author sboeser
- */
-class XMLFilenameFilter implements FilenameFilter
-{
-
- // accept all readable .xml .gz and .gzip files, no directories
- public boolean accept(File dir, String name)
- {
- //First check the name
- if ( ! name.toLowerCase().endsWith(".xml"))
- if ( ! name.toLowerCase().endsWith(".gzip"))
- if ( ! name.toLowerCase().endsWith(".gz"))
- //invalid ending
- return false;
-
- //Check file properties
- File f = new File(dir, name);
-
- //Reject directories
- if(! f.isFile()) return false;
- //Reject unreadable files
- if(! f.canRead()) return false;
-
- //Finally accept
- return true;
-
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/event/AFilter.java b/graphics/AtlantisJava/src/atlantis/event/AFilter.java
deleted file mode 100755
index e6293cba5df..00000000000
--- a/graphics/AtlantisJava/src/atlantis/event/AFilter.java
+++ /dev/null
@@ -1,275 +0,0 @@
-package atlantis.event;
-
-
-import atlantis.output.ALogInterface;
-import atlantis.output.AOutput;
-import atlantis.parameters.APar;
-import atlantis.data.AS3DData;
-
-
-/**
- * Filter of S3D hits ask Hans Drevermann
- */
-
-public class AFilter {
-
- final static int FILTER_GROUP=76;
-
- static int[] h=null;
- static int[] eta=null;
- static int[] phi=null;
- static int[] layer=null;
- static int[] group=null;
- static int[] skewGroup=null;
- static int[] groupMapping=null;
-
- static int[] bin=null;
- static int[] ll=null;
- static int[] hitLayers=null;
- static int[] id=null;
- static boolean[] good=null;
- static int numEtaBins=0;
-
- private static APar parameterStore = APar.instance();
-
- final static int[] layerAsBits=new int[32];
- static {
- layerAsBits[0]=1;
- for(int i=1; i<32; i++)
- layerAsBits[i]=2*layerAsBits[i-1];
- }
-
-
- public static void filter(AS3DData aS3DData) {
- if(aS3DData==null) {
- AOutput.append("AS3DData not found can't filter\n", ALogInterface.BAD_COMMAND);
- return;
- }
-
- int numUsefulPhiBins=parameterStore.get("Fil", "NumPhi").getI();
- int numUsefulEtaBins=parameterStore.get("Fil", "NumEta").getI();
- // +2 for wrap around and edge effect
- int numPhiBins=numUsefulPhiBins+2;
-
- // +2 for edge effects
- numEtaBins=numUsefulEtaBins+2;
-
- double etaRange=parameterStore.get("Fil", "EtaRange").getD();
- int requiredHitsInBin=parameterStore.get("Fil", "NumHits").getI();
- int numSkewSteps=parameterStore.get("Fil", "NumSkew").getI();
- double skewStepSize=parameterStore.get("Fil", "SkewStep").getD();
-
- int numHits=aS3DData.makeFilterDrawList(etaRange);
- int maxBins=numHits+1;
-
- if(h==null||h.length<numPhiBins*numEtaBins) h=new int[numPhiBins*numEtaBins];
- if(layer==null||layer.length<numHits) layer=new int[numHits];
- if(eta==null||eta.length<numHits) eta=new int[numHits];
- if(phi==null||phi.length<numHits) phi=new int[numHits];
- if(group==null||group.length<numHits) group=new int[numHits];
- if(skewGroup==null||skewGroup.length<numHits) skewGroup=new int[numHits];
- if(groupMapping==null||groupMapping.length<numHits) groupMapping=new int[numHits];
- //
- if(bin==null||bin.length<maxBins) bin=new int[maxBins];
- if(hitLayers==null||hitLayers.length<maxBins) hitLayers=new int[maxBins];
- if(id==null||id.length<maxBins) id=new int[maxBins];
- if(ll==null||ll.length<maxBins) ll=new int[maxBins];
- if(good==null||good.length<maxBins) good=new boolean[maxBins];
-
- layer=aS3DData.getLayer(layer);
- eta=aS3DData.getIntegerEta(numUsefulEtaBins, etaRange, eta);
-
- // initialise
- for(int i=0; i<numHits; ++i)
- group[i]=0;
-
- if(!parameterStore.get("Fil", "Loop").getStatus()) numSkewSteps=0;
-
- int numGroups=0;
-
- for(int step=-numSkewSteps; step<=numSkewSteps; step++) {
- double skew=0.;
-
- // TODO: Check if 166.666 should be the curvature parameter from the parameter store
- if(numSkewSteps!=0)
- skew=(1./skewStepSize)*step/(numSkewSteps*2*166.666);
-
- for(int i=0; i<maxBins; ++i) {
- hitLayers[i]=0;
- good[i]=false;
- }
-
- phi=aS3DData.getIntegerPhi(numUsefulPhiBins, skew, phi);
-
- int numBins=1;
-
- for(int i=0; i<numHits; ++i) {
- int b=phi[i]*numEtaBins+eta[i];
-
- if(h[b]==0) {
- h[b]=numBins;
- bin[numBins]=b;
- numBins++;
- }
- hitLayers[h[b]]|=layerAsBits[layer[i]];
- }
-
- // must treat the phi wraparound here......
-
- for(int e=0; e<numEtaBins; e++) {
- h[(0)*numEtaBins+e]=h[(numUsefulPhiBins)*numEtaBins+e];
- h[(numUsefulPhiBins+1)*numEtaBins+e]=h[(1)*numEtaBins+e];
- }
-
- int ngood=0;
-
- for(int i=1; i<numBins; i++) {
- int b=bin[i];
- int hitLayersSummed=0;
-
- // add hits from 3x3 region around this bin
- for(int p=b-numEtaBins; p<b+2*numEtaBins; p+=numEtaBins)
- for(int e=p-1; e<p+2; ++e) {
- int ibin=h[e];
-
- if(ibin>0)
- hitLayersSummed|=hitLayers[ibin];
- }
- if(countBits(hitLayersSummed)>=requiredHitsInBin) {
- good[i]=true;
- ll[ngood++]=i;
- }
- }
-
- for(int i=0; i<ngood; ++i)
- id[ll[i]]=0;
-
- int firstGroup=numGroups+1;
-
- for(int i=0; i<ngood; ++i)
- if(id[ll[i]]==0)
- add(ll[i], ++numGroups);
-
- for(int j=firstGroup; j<=numGroups; ++j) {
- int hls=0;
-
- for(int i=0; i<ngood; i++)
- if(id[ll[i]]==j) {
- hls|=hitLayers[ll[i]];
- }
- if(countBits(hls)<requiredHitsInBin)
- for(int i=0; i<ngood; i++)
- if(id[ll[i]]==j)
- good[ll[i]]=false;
- }
-
- for(int i=0; i<numHits; ++i) {
- int b=h[phi[i]*numEtaBins+eta[i]];
-
- if(good[b])
- skewGroup[i]=id[b];
- else
- skewGroup[i]=0;
- }
-
- // now zero the histogram for next call
- for(int i=1; i<numBins; i++)
- h[bin[i]]=0;
- // wrap around
- for(int e=0; e<numEtaBins; e++) {
- h[(0)*numEtaBins+e]=0;
- h[(numPhiBins-1)*numEtaBins+e]=0;
- }
-
- group=mergeGroups(numHits, numGroups, group, skewGroup);
-
- }
-
- group=renumberGroups(numHits, group);
-
- int num=0;
-
- for(int i=0; i<numHits; ++i)
- if(group[i]>0) num++;
-
- AOutput.alwaysAppend("\nFiltering:\n Input hits = "+numHits+"\n Num grouped = "+num+"\n",ALogInterface.NORMAL_BOLD);
-
- aS3DData.setGroup(group);
- }
-
- public static void add(int i, int numGroup) {
- id[i]=numGroup;
- int b=bin[i];
-
- // add hits from 3x3 region around this bin
- for(int p=b-numEtaBins; p<b+2*numEtaBins; p+=numEtaBins)
- for(int e=p-1; e<p+2; ++e) {
- int ibin=h[e];
-
- if(good[ibin]&&id[ibin]==0)
- add(ibin, numGroup);
- }
- }
-
- public static int[] mergeGroups(int numHits, int numGroups, int[] group, int[] skewgroup) {
-
- for(int i=1; i<=numGroups; ++i)
- groupMapping[i]=i;
-
- for(int i=0; i<numHits; ++i)
- if(skewGroup[i]>0&&group[i]>0) {
- int g1=groupMapping[group[i]];
- int g2=groupMapping[skewGroup[i]];
-
- if(g1!=g2)
- for(int g=1; g<=numGroups; ++g)
- if(groupMapping[g]==g1||groupMapping[g]==g2) groupMapping[g]=g1;
- }
-
- for(int i=0; i<numHits; ++i)
- if(skewGroup[i]>0||group[i]>0) {
- int g=skewGroup[i];
-
- if(g==0)
- g=group[i];
- group[i]=groupMapping[g];
- }
- return group;
- }
-
- public static int[] renumberGroups(int numHits, int[] group) {
- int numGroups=0;
-
- for(int i=0; i<numHits; ++i)
- if(group[i]>0) {
- int g=group[i];
-
- numGroups++;
- for(int j=i; j<numHits; ++j)
- if(group[j]==g)
- group[j]=-numGroups;
- }
- for(int i=0; i<numHits; ++i)
- group[i]=-group[i];
- return group;
- }
-
- // Return the number of bits currently set. This is done via a lookup table
-
- final static int[] countLUT= {0, 1, 1, 2, 1, 2, 2, 3, 1, 2, 2, 3, 2, 3, 3, 4, 1, 2, 2, 3, 2, 3, 3,
- 4, 2, 3, 3, 4, 3, 4, 4, 5, 1, 2, 2, 3, 2, 3, 3, 4, 2, 3, 3, 4, 3, 4, 4, 5, 2, 3, 3, 4, 3, 4, 4,
- 5, 3, 4, 4, 5, 4, 5, 5, 6, 1, 2, 2, 3, 2, 3, 3, 4, 2, 3, 3, 4, 3, 4, 4, 5, 2, 3, 3, 4, 3, 4, 4,
- 5, 3, 4, 4, 5, 4, 5, 5, 6, 2, 3, 3, 4, 3, 4, 4, 5, 3, 4, 4, 5, 4, 5, 5, 6, 3, 4, 4, 5, 4, 5, 5,
- 6, 4, 5, 5, 6, 5, 6, 6, 7, 1, 2, 2, 3, 2, 3, 3, 4, 2, 3, 3, 4, 3, 4, 4, 5, 2, 3, 3, 4, 3, 4, 4,
- 5, 3, 4, 4, 5, 4, 5, 5, 6, 2, 3, 3, 4, 3, 4, 4, 5, 3, 4, 4, 5, 4, 5, 5, 6, 3, 4, 4, 5, 4, 5, 5,
- 6, 4, 5, 5, 6, 5, 6, 6, 7, 2, 3, 3, 4, 3, 4, 4, 5, 3, 4, 4, 5, 4, 5, 5, 6, 3, 4, 4, 5, 4, 5, 5,
- 6, 4, 5, 5, 6, 5, 6, 6, 7, 3, 4, 4, 5, 4, 5, 5, 6, 4, 5, 5, 6, 5, 6, 6, 7, 4, 5, 5, 6, 5, 6, 6,
- 7, 5, 6, 6, 7, 6, 7, 7, 8};
-
- final static int maskByte=255;
-
- public static int countBits(int bits) {
- return countLUT[bits&maskByte]+countLUT[(bits>>>8)&maskByte]+countLUT[(bits>>>16)&maskByte];
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/event/AImageProducer.java b/graphics/AtlantisJava/src/atlantis/event/AImageProducer.java
deleted file mode 100644
index 74615cbd896..00000000000
--- a/graphics/AtlantisJava/src/atlantis/event/AImageProducer.java
+++ /dev/null
@@ -1,129 +0,0 @@
-package atlantis.event;
-
-import atlantis.utils.*;
-import java.io.BufferedOutputStream;
-import java.io.File;
-import java.io.FileOutputStream;
-import java.io.IOException;
-import java.io.OutputStream;
-
-import atlantis.Atlantis;
-import atlantis.canvas.ACanvas;
-import atlantis.graphics.encoders.AImageEncoder;
-import java.awt.Dimension;
-
-
-/**
- * Implements ANewEventListener and creates image files
- * upon each newEvent call. A scale factor allows to e.g. produce thumbnails by
- * scaling down image. The image producer works in two modes:
- * a) If no file name is given, a file name will be generated from run and event
- * number. In case the output file exists, no file is created but a warning is written out.
- * b) If a file name is given, a temporary file is generated first, and then
- * renamed to the given file name. If renaming fails, a warning is written out
- * and the temporary file is deleted.
- *
- * @author Sebastian Boeser
- */
-
-public abstract class AImageProducer implements ANewEventListener
-{
- /** File name prefix */
- protected static final String filePrefix = "atlantis";
- /** Minimum number of digits for event- and run-number when writing files */
- protected static final int encodeNumberDigits = 6;
-
- /** directory to store files in */
- protected final File directory ;
- /** Default image dimensions */
- protected final Dimension imageSize;
- /** The thumbnail scale */
- protected final double scaleFactor;
- /** A fixed filename if given on the command line */
- protected final String fixedFileName;
-
- /**
- * Inner exception class
- */
- public static class InstantiationException extends Exception {
- //only declare constructor
- InstantiationException(String what){
- super(what);
- }
- };
-
- /**
- * Fully qualified constructor,
- * intializing all the attributes and check the parameters validity
- * @param dir the directory in which to save all the files
- * @param size the dimensions of the images
- * @param scale the factor by which to scale the images
- * @param fileName if not null, that file will be overwritten for each event
- * @throws InstantiationException if we fail to create the object
- */
- protected AImageProducer(String dir, Dimension size, double scale, String fileName) throws InstantiationException
- {
- // First check the directory parameter
- directory = new File(dir);
-
- //That it exists
- if(! directory.exists()) throw new InstantiationException("Directory "+dir+" doesn't exist");
-
- //That it is a directory
- if(! directory.isDirectory()) throw new InstantiationException(dir + " is not a directory");
-
- //And that we can write in it
- if(! directory.canWrite()) throw new InstantiationException("Cannot write to directory "+dir);
-
- //Check frequency and history length arguments
- if (scale <= 0) throw new InstantiationException("Negative or zero scale factor");
-
- // store all parameters
- imageSize = size;
- scaleFactor = scale;
- fixedFileName = fileName;
-
- }
-
-
- /**
- * Return the string build from this events file name
- * @param evt the event info from which to build the filename
- * @param minDigit minimum number of digits for run- and event-number
- * @return the file name
- */
- protected String getEventFileName(AEventInfo evt){
- String nameFormat = String.format("%%s_%%0%dd_%%0%dd",encodeNumberDigits,encodeNumberDigits);
- return String.format(nameFormat,
- filePrefix,evt.getRunNumber(),evt.getEventNumber());
- }
-
-
- /**
- * Safes a byteArray of data into a file given by a fileName
- * @param data the data
- * @param file the file to write into
- * @throws Exception in case of saving fails
- */
- protected void saveDataIntoFile(byte[] data, File file) throws IOException
- {
-
- //Sanity check
- if ((data == null) ||(file == null)) return;
-
- //Open output stream and write to output stream
- FileOutputStream fos = new FileOutputStream(file);
- OutputStream os = new BufferedOutputStream(fos);
- os.write(data);
- os.flush();
- os.close();
-
- }
-
- /**
- * Called whenever a new event appears. Store an image in the directory,
- * either with a generated file name (no overwrite) or with a fixed file name (overwrite)
- * @param event the event from which to generate the image
- */
- public abstract void newEvent(AEvent event);
-}
\ No newline at end of file
diff --git a/graphics/AtlantisJava/src/atlantis/event/ANewEventListener.java b/graphics/AtlantisJava/src/atlantis/event/ANewEventListener.java
deleted file mode 100644
index 7657cbe4839..00000000000
--- a/graphics/AtlantisJava/src/atlantis/event/ANewEventListener.java
+++ /dev/null
@@ -1,18 +0,0 @@
-
-package atlantis.event;
-
-/**
- * Interface for all NewEventListener classes. Each time a new event is
- * brought to the event manager, the NewEvent:isteners newEvent method is
- * called with the new event as an argument
- * @author sboeser
- */
-public interface ANewEventListener {
-
- /**
- * This method gets called each time a new new is available.
- * @param event the new event
- */
- abstract public void newEvent(AEvent event);
-
-}
\ No newline at end of file
diff --git a/graphics/AtlantisJava/src/atlantis/event/ANewEventSourceListener.java b/graphics/AtlantisJava/src/atlantis/event/ANewEventSourceListener.java
deleted file mode 100644
index 6101f3a4f1b..00000000000
--- a/graphics/AtlantisJava/src/atlantis/event/ANewEventSourceListener.java
+++ /dev/null
@@ -1,16 +0,0 @@
-package atlantis.event;
-
-/**
- * Interface for all NewEventSourceListener classes. Each time the event source
- * is changed, the newEventSourcemethod is called.
- * @author maillard
- */
-public interface ANewEventSourceListener {
-
- /**
- * This method gets called each time the layout is changed.
- * @param eventSource the new event source
- */
- abstract public void newEventSource(AEventSource eventSource);
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/event/AObjectsAssociation.java b/graphics/AtlantisJava/src/atlantis/event/AObjectsAssociation.java
deleted file mode 100644
index 6f4b148b436..00000000000
--- a/graphics/AtlantisJava/src/atlantis/event/AObjectsAssociation.java
+++ /dev/null
@@ -1,26 +0,0 @@
-package atlantis.event;
-
-/**
- * @author Qiang Lu
- *
- */
-public class AObjectsAssociation extends AAssociation
-{
- private String[] key;
-
- public AObjectsAssociation(String a, String b, String[] associatedKey,
- int[] associatedIndex, int[] associatedLinkCount, AEvent e)
- {
- super(a, b, associatedLinkCount, associatedIndex,e);
- this.key = new String[associatedKey.length];
- for (int i=0; i<associatedKey.length; i++)
- {
- this.key[i] = associatedKey[i];
- }
- }
-
- public String[] getKey()
- {
- return key;
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/event/APngImageProducer.java b/graphics/AtlantisJava/src/atlantis/event/APngImageProducer.java
deleted file mode 100644
index 21cd4d7199b..00000000000
--- a/graphics/AtlantisJava/src/atlantis/event/APngImageProducer.java
+++ /dev/null
@@ -1,119 +0,0 @@
-package atlantis.event;
-
-import atlantis.utils.*;
-import java.io.File;
-import java.io.IOException;
-
-import atlantis.canvas.ACanvas;
-import atlantis.graphics.encoders.AImageEncoder;
-import java.awt.Dimension;
-
-
-/**
- * Implements ANewEventListener and creates PNG files
- * upon each newEvent call. A scale factor allows to e.g. produce thumbnails by
- * scaling down image. The image producer works in two modes:
- * a) If no file name is given, a file name will be generated from run and event
- * number. In case the PNG file exists, no file is created but a warning is written out.
- * b) If a file name is given, a temporary file is generated first, and then
- * renamed to the given file name. If renaming fails, a warning is written out
- * and the temporary file is deleted.
- *
- * @author Sebastian Boeser
- */
-
-public class APngImageProducer extends AImageProducer
-{
- // the logger
- private static final ALogger logger = ALogger.getLogger(APngImageProducer.class);
-
- // Our image encode
- private final AImageEncoder imageEncoder = new AImageEncoder();
-
- /**
- * Fully qualified constructor,
- * intializing all the attributes and check the parameters validity
- * @param dir the directory in which to save all the files
- * @param size the dimensions of the images
- * @param scale the factor by which to scale the images
- * @param fileName if not null, that file will be overwritten for each event
- * @throws InstantiationException if we fail to create the object
- */
- public APngImageProducer(String dir, Dimension size, double scale, String fileName) throws InstantiationException
- {
- super(dir, size, scale, fileName);
- }
-
- /**
- * Called whenever a new event appears. Store a PNG in the directory,
- * either with a generated file name (no overwrite) or with a fixed file name (overwrite)
- * @param event the event from which to generate the PNG
- */
- public void newEvent(AEvent event)
- {
-
- //If auto had been set for size (height is negative), get height from Canvas
- if (imageSize.height < 0) imageSize.setSize(imageSize.width, ACanvas.getCanvas().getRespectiveHeight(imageSize.width));
-
- //Create the file to write the data into
- File pngFile;
- //If we don't have a fixed file name,
- //generate a unique one based on run- and event number
- if (fixedFileName==null){
-
- //Now construct all the full path for the file we want to save
- String pngName = String.format("%s%s%s.png",directory,
- System.getProperty("file.separator"),
- getEventFileName(event));
-
- // Create file handles to the file and check if it exists
- pngFile = new File(pngName);
- //Do not overwrite any existing files
- if (pngFile.exists()) {
- logger.warn("File "+ pngName +" already exists - will not overwrite");
- return;
- }
- //otherwise generate a temporary file first,
- //then move it in place later
- } else {
- //make a temporary file in the final directory
- try {
- pngFile = File.createTempFile(filePrefix+"_", ".png",directory);
- } catch (IOException ex) {
- logger.warn("Failed to create temporary file in "+directory.getAbsolutePath());
- return;
- }
- }
-
- //Now create the image. If the scaleFactor equals 1, no scaling will happen.
- byte[] pngData = imageEncoder.getScaledPNGData(imageSize.width,imageSize.height,scaleFactor);
-
- //Now try saving the acquired data,
- //and if it shall go to a fixed file, move it there
- try {
- //Save the PNG
- saveDataIntoFile(pngData, pngFile);
- //move to fixed file name if requested
- if (fixedFileName != null){
-
- //Get a handle to the final destination
- File fixedFile = new File(directory,fixedFileName);
-
- //delete target if exits
- if (fixedFile.exists() && (!fixedFile.delete()))
- throw new IOException("Failed to delete existing file "+fixedFile.getAbsolutePath());
-
- //And move the new file in place
- if (!pngFile.renameTo(fixedFile))
- throw new IOException("Failed to rename temporary file to "+fixedFile.getAbsolutePath());
- }
- } catch (IOException ioe) {
- //If we fail, throw a warning
- logger.warn("Could not save PNG files for history\n"+ioe.toString());
- } finally {
- //In any case, delete the pngFile, if it was just temporary
- if (fixedFileName != null) pngFile.delete();
- }
-
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/event/AStreamedEventSource.java b/graphics/AtlantisJava/src/atlantis/event/AStreamedEventSource.java
deleted file mode 100644
index b41e007072f..00000000000
--- a/graphics/AtlantisJava/src/atlantis/event/AStreamedEventSource.java
+++ /dev/null
@@ -1,52 +0,0 @@
-package atlantis.event;
-
-import atlantis.event.AEventSource.InvalidEventSourceException;
-import atlantis.event.AEventSource.NoMoreEventsException;
-import java.util.Vector;
-
-/**
- * This interface shall be implemented by all event sources that support event
- * streams. Only provides simple get and set methods.
- * @author sboeser
- */
-public interface AStreamedEventSource extends AEventSource {
-
- /**
- * Exception that is thrown if the stream is invalid
- */
- public class InvalidStreamException extends AEventSourceException
- {
- //Default constructor
- public InvalidStreamException() { super(); }
- //Constructor with a string
- public InvalidStreamException( String message ){ super( message ); }
- //Constructor with a description and cause
- public InvalidStreamException( String message, Throwable cause ){ super( message, cause ); }
- }
-
- /**
- * Get an array of names of all available streams
- * @return the array of stream names
- * @throws InvalidEventSourceException if the list of streams can not be obtained
- */
- Vector<String> getAvailableStreams() throws InvalidEventSourceException;
-
- /**
- * Set the stream from which to provide events
- * @param streamName the stream from which to get events
- * @throws InvalidStreamException if the given name does not specify a valid stream
- * @throws InvalidEventSourceException if the server cannot be contacted to get the stream names
- */
- void setStream(String streamName) throws InvalidStreamException,
- InvalidEventSourceException;
-
- /**
- * Get the currently selected stream, or the default stream if none is selected
- * @return the name of the currently selected stream
- * @throws InvalidEventSourceException if the list of streams can not be obtained
- * @throws NoMoreEventsException if no stream is available
- *
- */
- String getStream() throws InvalidEventSourceException,
- NoMoreEventsException;
-}
diff --git a/graphics/AtlantisJava/src/atlantis/event/ASvgImageProducer.java b/graphics/AtlantisJava/src/atlantis/event/ASvgImageProducer.java
deleted file mode 100644
index a27830547d9..00000000000
--- a/graphics/AtlantisJava/src/atlantis/event/ASvgImageProducer.java
+++ /dev/null
@@ -1,117 +0,0 @@
-package atlantis.event;
-
-import java.io.File;
-import java.io.IOException;
-
-import atlantis.utils.*;
-import atlantis.canvas.ACanvas;
-import atlantis.graphics.encoders.AImageEncoder;
-import java.awt.Dimension;
-
-
-/**
- * Implements ANewEventListener and creates SVG files
- * upon each newEvent call. A scale factor allows to e.g. produce thumbnails by
- * scaling down image. The image producer works in two modes:
- * a) If no file name is given, a file name will be generated from run and event
- * number. In case the output file exists, no file is created but a warning is written out.
- * b) If a file name is given, a temporary file is generated first, and then
- * renamed to the given file name. If renaming fails, a warning is written out
- * and the temporary file is deleted.
- *
- * @author Tom McLaughlan
- */
-
-public class ASvgImageProducer extends AImageProducer
-{
- // the logger
- private static final ALogger logger = ALogger.getLogger(ASvgImageProducer.class);
-
- // Our image encode
- private final AImageEncoder imageEncoder = new AImageEncoder();
-
- /**
- * Fully qualified constructor,
- * intializing all the attributes and check the parameters validity
- * @param dir the directory in which to save all the files
- * @param size the dimensions of the images
- * @param scale the factor by which to scale the images
- * @param fileName if not null, that file will be overwritten for each event
- * @throws InstantiationException if we fail to create the object
- */
- public ASvgImageProducer(String dir, Dimension size, double scale, String fileName) throws InstantiationException
- {
- super(dir, size, scale, fileName);
- }
-
- /**
- * Called whenever a new event appears. Store an SVG in the directory,
- * either with a generated file name (no overwrite) or with a fixed file name (overwrite)
- * @param event the event from which to generate the SVG
- */
- public void newEvent(AEvent event)
- {
-
- //If auto had been set for size (height is negative), get height from Canvas
- if (imageSize.height < 0) imageSize.setSize(imageSize.width, ACanvas.getCanvas().getRespectiveHeight(imageSize.width));
-
- //Create the file to write the data into
- File outFile;
- //If we don't have a fixed file name,
- //generate a unique one based on run- and event number
- if (fixedFileName==null){
-
- //Now construct all the full path for the file we want to save
- String outFileName = String.format("%s%s%s.svg",directory,
- System.getProperty("file.separator"),
- getEventFileName(event));
-
- // Create file handles to the file and check if it exists
- outFile = new File(outFileName);
- //Do not overwrite any existing files
- if (outFile.exists()) {
- logger.warn("File "+ outFileName +" already exists - will not overwrite");
- return;
- }
- //otherwise generate a temporary file first,
- //then move it in place later
- } else {
- //make a temporary file in the final directory
- try {
- outFile = File.createTempFile(filePrefix+"_", ".svg",directory);
- } catch (IOException ex) {
- logger.warn("Failed to create temporary file in "+directory.getAbsolutePath());
- return;
- }
- }
-
- //Now try saving the acquired data,
- //and if it shall go to a fixed file, move it there
- try {
- imageEncoder.saveSVG(imageSize.width, imageSize.height, outFile);
-
- //move to fixed file name if requested
- if (fixedFileName != null){
-
- //Get a handle to the final destination
- File fixedFile = new File(directory,fixedFileName);
-
- //delete target if exits
- if (fixedFile.exists() && (!fixedFile.delete()))
- throw new IOException("Failed to delete existing file "+fixedFile.getAbsolutePath());
-
- //And move the new file in place
- if (!outFile.renameTo(fixedFile))
- throw new IOException("Failed to rename temporary file to "+fixedFile.getAbsolutePath());
- }
- } catch (IOException ioe) {
- //If we fail, throw a warning
- logger.warn("Could not save SVG files for history\n"+ioe.toString());
- } finally {
- //In any case, delete the pngFile, if it was just temporary
- if (fixedFileName != null) outFile.delete();
- }
-
-
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/event/AURLEventSource.java b/graphics/AtlantisJava/src/atlantis/event/AURLEventSource.java
deleted file mode 100644
index 530a3793cd8..00000000000
--- a/graphics/AtlantisJava/src/atlantis/event/AURLEventSource.java
+++ /dev/null
@@ -1,385 +0,0 @@
-package atlantis.event;
-
-import atlantis.data.AEventFromXML;
-
-import java.util.ArrayList;
-
-import java.io.InputStream;
-import java.io.InputStreamReader;
-import java.io.BufferedInputStream;
-import java.io.BufferedReader;
-import java.io.IOException;
-import java.io.FileNotFoundException;
-import java.net.URL;
-import java.net.MalformedURLException;
-
-import java.util.regex.Pattern;
-import java.util.regex.Matcher;
-import java.util.Random;
-
-import atlantis.output.ALogInterface;
-import atlantis.output.AOutput;
-import atlantis.utils.ALogger;
-
-import java.util.Collections;
-
-
-/**
- * This class obtains an event from an XML file which is read from
- * URL address (from a remote source).
- *
- * Once the file is read the classes tries to create an internal
- * list of XML event files from this remote source which is utilised
- * when the user accesses next, resp. previous event from this address.
- *
- * It is dependent on the fact that the web server supports directory
- * listings - i.e. it returns an HTML page which this class parses
- * and gets all files conforming ".*\.xml" regular expression.
- *
- * It is possible to specify only URL with a directory where the event
- * files are.
- *
- * @author sboeser
- */
-public class AURLEventSource extends ABufferedEventSource
-{
- // get the logger
- private static final ALogger logger = ALogger.getLogger(AURLEventSource.class);
- // the name of the event source
- private String directoryURL = null;
-
- // needed for random mode
- private Random randomGenerator = new Random();
-
- /**
- * @param mode event navigation mode
- * @return true if the requested mode is supported by this source
- */
- public boolean supportsNavigationMode(NavigationMode mode) {
- if(mode == NavigationMode.SEQUENTIAL ||
- mode == NavigationMode.RANDOM ||
- mode == NavigationMode.LOOP)
- return true;
- return false;
- }
-
- /**
- * Constructor with the URL of the directory
- * @param sourceName
- * @throws atlantis.event.AEventSource.InvalidEventSourceException
- */
- public AURLEventSource(String sourceName) throws InvalidEventSourceException
- {
-
- //Make sure the event source starts with http://
- if( ! sourceName.toLowerCase().startsWith("http://"))
- throw new InvalidEventSourceException("URL event source name does"+
- "not start with \"http://\"");
-
- //Store event source
- directoryURL = sourceName;
- }
-
- /**
- * @return the directory URL string
- */
- public String getSourceName() {
- return directoryURL;
- }
-
- /**
- * Get a list of files in a directory given by a URL
- * @param url the url of the directory
- * @return a list of urls to the individual files
- * @throws atlantis.event.AEventSource.InvalidEventSourceException
- */
- private ArrayList<String> getEventListForURL(String url) throws InvalidEventSourceException {
-
- //the url of the directory we are searching
- String baseUrl = url;
- //trim any file endings from url
- if (url.endsWith(".xml"))
- baseUrl = url.substring(0, url.lastIndexOf('/'));
-
-
- //The input stream - need to be closed in the end
- InputStreamReader urlStream = null;
- BufferedReader br = null;
-
- //be a bit verbose
- logger.info("Trying to get directory listing from " + baseUrl);
-
- //Create an array to return
- ArrayList<String> eventList = new ArrayList<String>();
-
- //Now try reading stuff from the web
- try {
- //Get an input stream reader
- urlStream = new InputStreamReader(new URL(baseUrl).openStream());
- //get a buffered reader for that stream
- br = new BufferedReader(urlStream);
-
- // input is the whole line from HTML directory listing
- // example to match: <a href="atlantis_event_70417_93.xml">
- // We use regular expressions patterns to catch the lines of interest
- // ( ) defines group, group 0 is the whole match and group 1 is
- // just the desired file name within the parentheses
- Pattern pattern = Pattern.compile("<a href=\"(.*\\.xml)\">");
-
- //Loop over all lines
- String line = null;
- while ((line = br.readLine()) != null) {
- //try to match the patter
- Matcher matcher = pattern.matcher(line);
- if (matcher.find()) // not .match() (!)
- {
- //Get the first group from the pattern
- //i.e the file name and add to our event list
- eventList.add(matcher.group(1));
- }
- }
-
- //be a bit verbose
- logger.debug("List of " + eventList.size() + " events loaded from " + baseUrl);
-
-
- } catch (MalformedURLException mue) {
- String msg = "Incorrect URL address: " + baseUrl;
- logger.error(msg);
- AOutput.alwaysAppend("\n" + msg + "\n", ALogInterface.WARNING);
- throw new InvalidEventSourceException(msg, mue);
- } catch (IOException ioe) {
- String msg = "IO error while reading URL: " + baseUrl;
- logger.error(msg);
- AOutput.alwaysAppend("\n" + msg + "\n", ALogInterface.WARNING);
- throw new InvalidEventSourceException(msg, ioe);
- } finally {
- //In any case close everything
- try {
- br.close();
- urlStream.close();
- } catch (Throwable t) {
- //do nothing here
- }
- }
-
- //check if there were at least some events
- if (eventList.size()==0)
- throw new InvalidEventSourceException("No events found at "+baseUrl);
-
- //In the end sort the event list
- Collections.sort(eventList);
-
- //and return it
- return eventList;
-
- }
-
- /**
- * Read in an event from a fully specified path
- * @param fileName the URL to the file
- * @param directoryURL the name of the event source
- * @return the event
- */
- private AEvent readEventFromURL(String fileName, String directoryURL)
- throws ReadEventException {
- //Things we need to close in the end
- InputStream urlStream = null;
- BufferedInputStream buffStream = null;
- AEvent event = null;
-
- try {
- //Open the url as stream
- String fullURL = directoryURL + "/" + fileName;
- URL eventURL = new URL(fullURL);
- urlStream = eventURL.openStream();
- buffStream = new BufferedInputStream(urlStream);
- //then read the event from there
- logger.debug("Reading event data stream from " + eventURL.toString() + "...");
- event = AEventFromXML.read(buffStream, fileName);
-
- } catch (FileNotFoundException fnfe) {
- //Show as a warning and rethrow
- String msg = "File not found at " + directoryURL+"/"+fileName;
- logger.error(msg);
- AOutput.alwaysAppend("\n" + msg + "\n", ALogInterface.WARNING);
- throw new ReadEventException(msg, fnfe);
- } catch (IOException ioe) {
- //Show as an error and rethrow
- String msg = "IO error when reading " + directoryURL;
- logger.error(msg);
- AOutput.alwaysAppend("\n" + msg + "\n", ALogInterface.WARNING);
- throw new ReadEventException(msg, ioe);
- } finally {
- try {
- if (urlStream != null) {
- urlStream.close();
- }
- if (buffStream != null) {
- buffStream.close();
- }
- } catch (Throwable t) {
- //Ignore all errors
- }
- }
- return event;
- }
-
- /**
- * Read a random event
- * @return the random event
- * @throws InvalidEventSourceException
- * @throws ReadEventException
- */
- protected AEvent readRandom() throws InvalidEventSourceException, ReadEventException
- {
-
- String fileName = null;
-
- //Check if we have been given a fully specified file url
- if(directoryURL.endsWith(".xml")){
- //Store the file name from the url
- fileName = directoryURL.substring(directoryURL.lastIndexOf('/')+1,directoryURL.length());
- //trim file endings from url
- directoryURL = directoryURL.substring(0, directoryURL.lastIndexOf('/'));
-
- } else {
-
- //Update event list every time, so we get new files
- ArrayList<String> eventList=getEventListForURL(directoryURL);
-
- //Check there are more files
- if (eventList.size() == 0)
- throw new InvalidEventSourceException("No valid files at "+directoryURL);
-
- //Pick a random event
- int iName = randomGenerator.nextInt(eventList.size());
-
- //Now get the new file
- fileName = eventList.get(iName);
- }
-
- //Now read exactly that event and return it
- return readEventFromURL(fileName,directoryURL);
- }
-
-
- /**
- * Read the previous event from the URL directory
- * @return the previous event
- * @throws NoMoreEventsException
- * @throws InvalidEventSourceException
- * @throws ReadEventException
- */
- public AEvent readNext(AEventInfo currentEvent) throws NoMoreEventsException,
- InvalidEventSourceException,
- ReadEventException
- {
- // if random mode is set, return a random event
- if(getNavigationMode() == NavigationMode.RANDOM) return readRandom();
-
- String fileName = null;
-
- //Check if we have been given a fully specified file url
- if(directoryURL.endsWith(".xml")){
- //Store the file name from the url
- fileName = directoryURL.substring(directoryURL.lastIndexOf('/')+1,directoryURL.length());
- //trim file endings from url
- directoryURL = directoryURL.substring(0, directoryURL.lastIndexOf('/'));
-
- } else {
-
- //Update event list every time, so we get new files
- ArrayList<String> eventList=getEventListForURL(directoryURL);
-
- //Check there are more files
- if (eventList.size() == 0)
- throw new NoMoreEventsException("No valid files at "+directoryURL);
- //Loop over file list
- int iName = 0;
- //search for next entry that is lexicographically larger
- //taking first one if there is no current one to compare to
- while ((currentEvent != null) &&
- (currentEvent.getSourceName().compareTo(eventList.get(iName)) >= 0)){
- //Go to next file
- ++iName;
- // if we have reached the end of the list...
- if (iName == eventList.size())
- // if in loop mode go to the first event
- if(getNavigationMode() == NavigationMode.LOOP) {
- iName = 0;
- break;
- }
- // if not in loop mode, abort
- else throw new NoMoreEventsException("No more files after "
- + currentEvent.getSourceName() + " in directory "+directoryURL);
- }
-
- //Now get the new file
- fileName = eventList.get(iName);
- }
-
- //Now read exactly that event and return it
- return readEventFromURL(fileName,directoryURL);
- }
-
- /**
- * Read the previous event from the current URL directory
- * @return the previous event
- * @throws NoMoreEventsException
- * @throws InvalidEventSourceException
- * @throws ReadEventException
- */
- public AEvent readPrevious(AEventInfo currentEvent) throws NoMoreEventsException,
- InvalidEventSourceException,
- ReadEventException
- {
- // in random mode there's no looking back
- if(getNavigationMode() == NavigationMode.RANDOM) throw new NoMoreEventsException("No more random events left in the buffer");
-
- String fileName = null;
-
- //Check if we have been given a fully specified file url
- if(directoryURL.endsWith(".xml")){
- //Store the file name from the url
- fileName = directoryURL.substring(directoryURL.lastIndexOf('/')+1,directoryURL.length());
- //trim file endings from url
- directoryURL = directoryURL.substring(0, directoryURL.lastIndexOf('/'));
-
- } else {
-
- //Update event list every time, so we get new files
- ArrayList<String> eventList=getEventListForURL(directoryURL);
-
- //Check there are more files
- if (eventList.size() == 0)
- throw new NoMoreEventsException("No valid files at "+directoryURL);
- //Loop over file list
- int iName = eventList.size()-1;
- //search from the end for the first entry that is lexicographically smaller
- //taking last one if there is no previous one to compare to
- while ((currentEvent != null) &&
- (currentEvent.getSourceName().compareTo(eventList.get(iName)) <= 0)){
- //Go to next file
- --iName;
- // if we have reached the end of the list...
- if (iName < 0)
- // if in loop mode, go to the last file
- if(getNavigationMode() == NavigationMode.LOOP) {
- iName = eventList.size()-1;
- break;
- }
- // if not in loop mode, abort
- else throw new NoMoreEventsException("No more files before "
- + currentEvent.getSourceName() + " in directory "+directoryURL);
- }
-
- //Now get the new file
- fileName = eventList.get(iName);
- }
-
- //Now read exactly that event and return it
- return readEventFromURL(fileName,directoryURL);
- }
-
-} // class AURLEventSource
diff --git a/graphics/AtlantisJava/src/atlantis/event/AZipEventSource.java b/graphics/AtlantisJava/src/atlantis/event/AZipEventSource.java
deleted file mode 100644
index 16aeb4d0f5e..00000000000
--- a/graphics/AtlantisJava/src/atlantis/event/AZipEventSource.java
+++ /dev/null
@@ -1,478 +0,0 @@
-package atlantis.event;
-
-import atlantis.data.AEventFromXML;
-
-import java.io.IOException;
-import java.io.File;
-import java.io.InputStream;
-import java.util.Enumeration;
-import java.util.ArrayList;
-import java.util.zip.ZipEntry;
-import java.util.zip.ZipFile;
-import java.util.zip.ZipInputStream;
-
-import atlantis.output.ALogInterface;
-import atlantis.output.AOutput;
-import atlantis.utils.AAtlantisException;
-import atlantis.utils.AUtilities;
-import java.net.MalformedURLException;
-import java.net.URL;
-import java.util.zip.ZipException;
-import java.util.Random;
-
-/**
- * Reading zip archives from local or network files or from zip files stored within .jar file
- */
-public class AZipEventSource implements AEventSource
-{
-
- //define the source type
- private enum SourceType {
- JAR_FILE,
- ZIP_FILE,
- ZIP_NETWORK_FILE
- };
-
- // current event navigation mode
- private NavigationMode eventNavigationMode = NavigationMode.SEQUENTIAL;
-
- // needed for random mode
- private Random randomGenerator = new Random();
-
- // A list of entries in the zip file
- ArrayList<ZipEntry> ZipEntries = new ArrayList<ZipEntry>();
- // pointer to the current zip entry
- int eventIndex = -1;
- // flag if zip file is read from jar file (as stream)
- SourceType sourceType = null;
- // event file name (or event archive name)
- String eventSource = null;
-
- /**
- * @return current event navigation mode
- */
- public NavigationMode getNavigationMode() {
- return eventNavigationMode;
- }
-
- /**
- * @param mode sets the event navigation mode
- */
- public void setNavigationMode(NavigationMode mode) throws InvalidEventSourceException {
- if(supportsNavigationMode(mode)) {
- eventNavigationMode = mode;
- // go to the first event
- eventIndex = -1;
- }
- else
- throw new InvalidEventSourceException("Mode '"+mode+"' not supported by current source");
- }
-
- /**
- * @param mode event navigation mode
- * @return true if the requested mode is supported by this source
- */
- public boolean supportsNavigationMode(NavigationMode mode) {
- if(mode == NavigationMode.SEQUENTIAL ||
- mode == NavigationMode.RANDOM ||
- mode == NavigationMode.LOOP)
- return true;
- return false;
- }
-
- /**
- * Constructor with event source
- * @param sourceName the name of the source
- * @throws InvalidEventSourceException
- */
- public AZipEventSource(String sourceName) throws InvalidEventSourceException
- {
- //Locally opened things
- ZipFile zipfile = null;
- ZipInputStream stream = null;
-
- try {
- // first check if it is an network file
- if (sourceName.startsWith("http://")) {
-
- //open network zip file input stream
- stream = openNetworkStream(sourceName);
- //try to read entries from network file
- readEntriesFromStream(stream);
- //set the source type
- sourceType = SourceType.ZIP_NETWORK_FILE;
-
- } else if (sourceName.startsWith("file://")) {
-
- // strip the file:// from the source name
- sourceName = sourceName.substring(7);
-
- // Check if this is a regular file
- File file = new File(sourceName);
-
- //Read entries from regular file
- if( (file.exists() && file.canRead())){
-
- //Now try to open as a zipfile
- zipfile = new ZipFile(sourceName);
- //Try to read the entries from that file
- readEntriesFromFile(zipfile);
- //set the source type
- sourceType = SourceType.ZIP_FILE;
-
-
- } else {
- //might still be a zip file in a jar archive
- stream = openJarStream(sourceName);
- //try to read entries from jar file
- readEntriesFromStream(stream);
- //set the source type
- sourceType = SourceType.JAR_FILE;
- }
- }
- } catch(AAtlantisException ae) {
- //Rethrow
- throw new InvalidEventSourceException("Atlantis exception reading from: "+eventSource,ae);
- } catch(MalformedURLException mue) {
- //Rethrow
- throw new InvalidEventSourceException("An unknown protocol is specified: "+eventSource,mue);
- } catch(ZipException zfe) {
- //Rethrow
- throw new InvalidEventSourceException("ZIP format error has occurred: "+eventSource,zfe);
- } catch(IOException ioe) {
- //Rethrow
- throw new InvalidEventSourceException("I/O error has occurred reading: "+eventSource,ioe);
- } finally {
- //Try to close everthing that has been opened
- try {
- if (zipfile != null) zipfile.close();
- if (stream != null) stream.close();
- } catch (Throwable t){
- //Do nothing if closing fails
- }
- }
-
- //If we have not got a valid source type, throw an error
- if (sourceType == null)
- throw new InvalidEventSourceException("Could not identify source type of "+sourceName);
-
- //Make sure there are valid events in the file
- if (ZipEntries.size() == 0)
- throw new InvalidEventSourceException("No entries in ZIP archive: "+sourceName);
-
- //Store source name
- eventSource=sourceName;
- //Otherwise set counter to first event
- eventIndex = -1;
- }
-
- /**
- * @return the name of the event file or archive
- */
- public String getSourceName() {
- return eventSource;
- }
-
- /**
- * Try to open a zip file in a jar file as input stream
- * @param sourceName the name of the zip file
- * @return the zip stream
- */
- private ZipInputStream openJarStream(String sourceName) throws AAtlantisException
- {
- //Open as zip input stream
- return new ZipInputStream(AUtilities.getFileAsStream(sourceName));
- }
-
- /**
- * Try to open a zip file on the net as input stream
- * @param sourceName the URL of the zip file
- * @return the zip stream
- */
- private ZipInputStream openNetworkStream(String sourceName) throws ZipException,
- MalformedURLException,
- IOException
- {
- //Open a network zip file as input stream
- return new ZipInputStream(new URL(sourceName).openStream());
- }
-
-
- /**
- * Check if this is a valid name of an entry in a zip file or stream
- * @param entryName the name of the entry
- * @return true if valid
- */
- private boolean checkZipEntry(ZipEntry entry){
- //Make sure it is not a directory
- if(entry.isDirectory()) return false;
- //Make sure it ends with .xml
- if (! entry.getName().toLowerCase().endsWith(".xml")) return false;
- //everthing fine
- return true;
- }
-
- /**
- * Get a list of all valid entries from a zip stream
- * @param zis the input stream
- */
- private void readEntriesFromStream(ZipInputStream zis) throws InvalidEventSourceException
- {
- try {
- //Loop over zip entries
- ZipEntry next = null;
- while((next = zis.getNextEntry()) != null){
- //If it is valid add it to our list fo entries
- if (checkZipEntry(next)) ZipEntries.add(next);
- }
- } catch(ZipException ze) {
- //Rethrow
- throw new InvalidEventSourceException("ZIP exception reading entry from zip stream",ze);
- } catch(IOException ioe){
- //rethrow
- throw new InvalidEventSourceException("I/O exception reading entry from zip stream",ioe);
- }
- }
-
- /**
- * Get a list of all valid XML file entries from a zip file
- * @param file the zip input file
- * @throws InvalidEventSourceException
- */
- private void readEntriesFromFile(ZipFile file) throws InvalidEventSourceException{
-
- //Seems to be a regular file
- try{
- //Get the zip file entries
- Enumeration<? extends ZipEntry> myenum = file.entries();
- //Loop over zip entries
- while(myenum.hasMoreElements()){
- //get the entry
- ZipEntry next = (ZipEntry) myenum.nextElement();
- //If it is valid add it to our list fo entries
- if (checkZipEntry(next)) ZipEntries.add(next);
- }
- } catch(IllegalStateException ise){
- //rethrow
- throw new InvalidEventSourceException("Zip file was cleased while trying to read entries: "+file.getName());
- }
- }
- /**
- * Read a particular event from a stream.
- * Since the file is read as stream, it's not possible to reference a
- * particular zip entry. However, we know the number of a zip entry
- * we want to get (eventIndex), so we seek (getNextEntry()) to the
- * zip entry of interest and then read it.
- * @return the event
- */
- private AEvent readEventFromStream() throws ReadEventException
- {
- //Things we need to close in the end
- ZipInputStream zis = null;
- AEvent event = null;
-
- try{
- //Check which kind of stream we have and open it
- if (sourceType == SourceType.JAR_FILE)
- zis = openJarStream(eventSource);
- else if (sourceType == SourceType.ZIP_NETWORK_FILE)
- zis = openNetworkStream(eventSource);
- else
- throw new ReadEventException("Trying to read stream from neither jar file nor network file:" +eventSource);
-
- //Now seek through file to current entry
- ZipEntry entry = null;
- for(int i = 0; i <= eventIndex; i++)
- entry = zis.getNextEntry();
-
- //Check if we have reached EOF while skipping
- if (entry == null)
- throw new ReadEventException("Reached EOF while skippeng to entry #"+eventIndex
- +" with name "+ZipEntries.get(eventIndex).getName()+ " in "+eventSource);
-
- //Next check if this is the entry we wanted to have
- if (! entry.getName().equals(ZipEntries.get(eventIndex).getName()))
- throw new ReadEventException("Content of zip stream changed since opening it:"+eventSource);
-
- //Finally read-in this entry
- event = AEventFromXML.read(zis, entry.getName());
- } catch (AAtlantisException ae) {
- throw new ReadEventException("Atlantis exception reading from: " + eventSource, ae);
- } catch (ZipException ze) {
- throw new ReadEventException("A ZIP format error has occurred reading entry " +
- ZipEntries.get(eventIndex).getName() + " from " + eventSource, ze);
- } catch (IllegalStateException ise) {
- throw new ReadEventException("The zip file has been closed while reading entry" +
- ZipEntries.get(eventIndex).getName() + " from " + eventSource, ise);
- } catch (IOException ioe) {
- throw new ReadEventException("I/O exception reading from: " + eventSource, ioe);
-
- } finally {
- try {
- //Always close the files in the end;
- if (zis != null) {
- zis.close();
- }
- } catch (Throwable t) {
- //Do nothing if closing the stream fails
- }
- }
-
- //Evertthing is fine, return the event
- return event;
- }
-
- /**
- * Read a particular event from a zip file
- * @param file the zip file
- * @return the event
- * @throws ReadEventException
- */
- private AEvent readEventFromFile() throws ReadEventException
- {
- ZipFile file = null;
- AEvent event = null;
- try {
- //Open the zip file
- file = new ZipFile(eventSource);
- //Get the input stream for the requested entry
- InputStream stream = file.getInputStream(ZipEntries.get(eventIndex));
- //Get the entry name
- String eventName = ZipEntries.get(eventIndex).getName();
- //Read the event
- event = AEventFromXML.read(stream,eventName);
- } catch (ZipException ze){
- throw new ReadEventException("A ZIP format error has occurred reading entry "+
- ZipEntries.get(eventIndex).getName() + " from "+ eventSource, ze);
- } catch (IllegalStateException ise){
- throw new ReadEventException("The zip file has been closed while reading entry"+
- ZipEntries.get(eventIndex).getName() + " from "+ eventSource, ise);
- } catch(IOException ioe){
- throw new ReadEventException("I/O error reading entry "+
- ZipEntries.get(eventIndex).getName() + " from "+ eventSource, ioe);
- } finally {
- //Always close the input stream
- try {
- if(file != null) file.close();
- } catch (Throwable t) {
- //Ignore all errors here
- }
- }
-
- //Everything fine so we can return the event
- return event;
- }
-
- /**
- * Reads a random event from a zipped source
- * @return the event
- * @throws InvalidEventSourceException
- * @throws ReadEventException
- */
- protected AEvent randomEvent() throws InvalidEventSourceException,
- ReadEventException
- {
- //Check if we have a valid source
- if(( sourceType == null ) || ( eventSource==null ))
- throw new InvalidEventSourceException("No valid input source");
-
- //Now go to next event
- eventIndex = randomGenerator.nextInt(ZipEntries.size());
-
- //Now get this stream from its proper source
- switch (sourceType){
- case JAR_FILE: return readEventFromStream();
- case ZIP_NETWORK_FILE: return readEventFromStream();
- case ZIP_FILE: return readEventFromFile();
- default: throw new ReadEventException("Unknown event source type");
- }
- }
-
- /**
- * Read the next event from a zipped source
- * @return the event
- * @throws InvalidEventSourceException
- * @throws NoMoreEventsException
- * @throws ReadEventException
- */
- public AEvent nextEvent() throws InvalidEventSourceException,
- NoMoreEventsException,
- ReadEventException
- {
- // if random mode is selected, return a random event
- if(getNavigationMode() == NavigationMode.RANDOM) return randomEvent();
-
- //Check if we have a valid source
- if(( sourceType == null ) || ( eventSource==null ))
- throw new InvalidEventSourceException("No valid input source");
-
- // if we're in loop mode and at the last event, go to the first one
- if(getNavigationMode() == NavigationMode.LOOP && eventIndex >= ZipEntries.size() - 1)
- eventIndex = 0;
- // if we're not in loop mode and at the last event...
- else {
- // check that there are still some events
- if(eventIndex >= ZipEntries.size() - 1){
- String msg="Already at last event in archive";
- // inform user
- AOutput.alwaysAppend("\n" + msg+"\n", ALogInterface.WARNING);
- throw new NoMoreEventsException(msg);
- }
- // go to next event.
- eventIndex++;
- }
-
- //Now get this stream from its proper source
- switch (sourceType){
- case JAR_FILE: return readEventFromStream();
- case ZIP_NETWORK_FILE: return readEventFromStream();
- case ZIP_FILE: return readEventFromFile();
- default: throw new ReadEventException("Unknown event source type");
- }
- }
-
-
- /**
- * Read the previous event from a zipped source
- * @return the event
- * @throws InvalidEventSourceException
- * @throws NoMoreEventsException
- * @throws ReadEventException
- */
- public AEvent previousEvent() throws InvalidEventSourceException,
- NoMoreEventsException,
- ReadEventException
- {
-
- // in random mode there's no looking back
- if(getNavigationMode() == NavigationMode.RANDOM) throw new NoMoreEventsException("Cannot go back in random mode");
-
- //Check if we have a valid source
- if(( sourceType == null ) || ( eventSource==null ))
- throw new InvalidEventSourceException("No valid input source");
-
- // if we're in loop mode and we're at the first event, go to the last one
- if(getNavigationMode() == NavigationMode.LOOP && eventIndex == 0)
- eventIndex = ZipEntries.size() -1;
- // if we're not il loop mode and at the first event...
- else {
- // check that there are still some events
- if(eventIndex == 0){
- String msg="Already at first event in archive";
- // inform user
- AOutput.alwaysAppend("\n" + msg+"\n", ALogInterface.WARNING);
- throw new NoMoreEventsException(msg);
- }
- // go to previous event.
- eventIndex--;
- }
-
- //Now get this stream from its proper source
- switch (sourceType){
- case JAR_FILE: return readEventFromStream();
- case ZIP_NETWORK_FILE: return readEventFromStream();
- case ZIP_FILE: return readEventFromFile();
- default: throw new ReadEventException("Unknown event source type");
- }
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/event/oncrpc/AONCRPCEventSource.java b/graphics/AtlantisJava/src/atlantis/event/oncrpc/AONCRPCEventSource.java
deleted file mode 100644
index 42410d71941..00000000000
--- a/graphics/AtlantisJava/src/atlantis/event/oncrpc/AONCRPCEventSource.java
+++ /dev/null
@@ -1,304 +0,0 @@
-
-package atlantis.event.oncrpc;
-
-import atlantis.data.AEventFromXML;
-import atlantis.utils.ALogger;
-
-import atlantis.event.ABufferedEventSource;
-import atlantis.event.AEvent;
-import atlantis.event.AEventInfo;
-import atlantis.event.AStreamedEventSource;
-import atlantis.event.AEventSource.InvalidEventSourceException;
-import atlantis.event.AEventSource.NoMoreEventsException;
-import atlantis.event.AEventSource.ReadEventException;
-
-import org.acplt.oncrpc.XdrVoid;
-import org.acplt.oncrpc.OncRpcTcpClient;
-import org.acplt.oncrpc.OncRpcException;
-import org.acplt.oncrpc.OncRpcProgramNotRegisteredException;
-
-import java.io.ByteArrayInputStream;
-import java.io.IOException;
-import java.net.ConnectException;
-import java.net.InetAddress;
-import java.util.Arrays;
-import java.util.Vector;
-
-/**
- * Implements an event source retrieving events from an ONC/RPC server.
- * By implementing a ABufferedEventSource, a number of previous events will be
- * available to the user. Care is taken to clear the buffer in case we run into
- * memory problems. This event source also provides event streams by implementing
- * AStreamedEventSource.
- *
- * @author sboeser
- */
-
-public class AONCRPCEventSource extends ABufferedEventSource implements AStreamedEventSource {
-
- //The logger
- private static final ALogger logger = ALogger.getLogger(AONCRPCEventSource.class);
-
- //The ONC/RPC client
- private OncRpcTcpClient client = null;
-
- //The default timeout value in milliseconds for calling the server
- private static final int DEFAULT_TIMEOUT = 2000;
- //The name of the stream to read events from
- private String currentStream = null;
-
- /**
- * Constructor with the server name and port as a string value
- * @param sourceName
- * @throws InvalidEventSourceException
- */
- public AONCRPCEventSource(String sourceName) throws InvalidEventSourceException {
-
- //Remove any leading "oncrpc://" indicator
- sourceName = sourceName.replaceFirst("oncrpc://", "");
-
- //Check if we can split the sourceName in hostName:port pair
- String[] sourceParams = sourceName.split(":");
- //Do some sanity check
- if (sourceParams.length > 3)
- throw new InvalidEventSourceException("Invalid <server[:port][:stream]> specification: "+sourceName);
-
- //Now try to get the port number if it was given,
- //Otherwise get port from portmapper by using 0;
- int port = 0;
- if ((sourceParams.length > 1)&&(sourceParams[1].length() > 0)){
- try {
- port = Integer.decode(sourceParams[1]);
- } catch (NumberFormatException nfe){
- throw new InvalidEventSourceException("Invalid port number: "+sourceParams[1]);
- }
- }
-
- //More sanity checks
- if (port < 0)
- throw new InvalidEventSourceException("Invalid port number: "+port);
-
- //If a stream name was given, set it now
- if (sourceParams.length > 2) currentStream = sourceParams[2];
-
-
- //Now call the fully qualified constructor with the defaul timeout value
- createClient(sourceParams[0],port,DEFAULT_TIMEOUT);
-
- }
-
- /**
- * Constructor with server name, port number and timeout
- * @param hostName the name or IP-address of the remote server
- * @param port the port number to which the request is send - can be 0
- * @param timeout a timeout value in milliseconds
- * @throws InvalidEventSourceException
- */
- public AONCRPCEventSource(String hostName, int port, int timeout) throws InvalidEventSourceException {
- //Call common constructor entry
- createClient(hostName,port,timeout);
- }
-
- /**
- * @return a string of the form oncrpc://hostName:port:stream
- */
- public String getSourceName() {
- return "oncrpc://"+client.getHost().getHostName()+":"+ client.getPort()+
- ((currentStream != null) ? ":"+currentStream : "");
- }
-
- /**
- * This source only supports sequential mode.
- * @param mode event navigation mode to test
- * @return true if the requested mode is supported by this source
- */
- public boolean supportsNavigationMode(NavigationMode mode) {
- if(mode == NavigationMode.SEQUENTIAL)
- return true;
- return false;
- }
-
- /**
- * Common entry point for all constructors
- * @param hostName the name or IP-address of the remote server
- * @param port the port number to which the request is send
- * @param timeout a timeout value in milliseconds
- * @throws InvalidEventSourceException
- */
- private void createClient(String hostName, int port, int timeout) throws InvalidEventSourceException {
-
- //Now try to create the client
- try {
- client = new OncRpcTcpClient(InetAddress.getByName(hostName),
- Server.ONCRPCSERVERPROG,Server.ONCRPCSERVERVERS,port);
- } catch ( ConnectException e ) {
- throw new InvalidEventSourceException("Could not connect to "+hostName,e);
- } catch ( OncRpcProgramNotRegisteredException e ) {
- throw new InvalidEventSourceException("Server not (yet) registered on "+hostName,e);
- } catch ( OncRpcException e ) {
- throw new InvalidEventSourceException("ONC/RPC exception while connecting to "+hostName,e);
- } catch ( IOException e ) {
- throw new InvalidEventSourceException("I/O Exception while connecting to "+hostName,e);
- }
-
- //Set the requested timeout
- client.setTimeout(timeout);
- }
-
- /**
- * Read the next event from the server
- * @param currentEvent the current event
- * @return the next event
- * @throws NoMoreEventsException
- * @throws InvalidEventSourceException
- * @throws ReadEventException
- */
- @Override
- protected synchronized AEvent readNext(AEventInfo currentEvent) throws NoMoreEventsException,
- InvalidEventSourceException,
- ReadEventException {
-
- //Be verbose
- logger.info("Call to remote server "+getSourceName());
-
- //Ping the server to make sure it is alive, otherwise try to recreate client
- try {
- client.call(Server.ONCRPC_NULL_PROC,XdrVoid.XDR_VOID, XdrVoid.XDR_VOID);
- } catch (OncRpcException e) {
- //Server does not respond to ping, try to recreate client
- logger.info("Failed to ping server "+getSourceName()+", trying to recreate client");
- //Use setting from old client to create new client, but allow new port number
- createClient(client.getHost().getHostName(),0,client.getTimeout());
- }
-
- //Create an event request - this may als set the default stream
- EventRequest eventReq = new EventRequest(-1,-1,getStream());
-
-
- //use information from existing event if there is
- if (currentEvent != null){
- eventReq.EventNumber = currentEvent.getEventNumber();
- eventReq.RunNumber = currentEvent.getRunNumber();
- }
-
- //Also prepare the return structure
- Event event = new Event();
-
- //record calling time
- long startTime = System.currentTimeMillis();
-
-
- // perform the remote call
- try {
- client.call(Server.ONCRPC_GETEVENT_PROC, eventReq, event);
- } catch (OncRpcException e) {
- throw new InvalidEventSourceException("Failed to get new event from server",e);
- }
-
- //do some statistics
- long callDuration = System.currentTimeMillis() - startTime;
- logger.debug("Received " + event.EventData.length + " bytes in " + callDuration + " ms");
-
- //Now analyze the event we got
- //Check if we already have the event
- if (event.isIdentical)
- //already have this event
- throw new NoMoreEventsException("Already have event "+event.EventNumber +
- " from run "+event.RunNumber);
- //Check if the stream was available
- if (!event.isAvailable)
- //make event source invalid
- throw new InvalidEventSourceException("No event available for stream "+eventReq.StreamName);
-
- //Check if the event is compressed
- if (event.isCompressed)
- //not supported yet
- throw new UnsupportedOperationException("Support for compressed events not yet implemented");
-
- //It seems we got something worth processing
- //Strip the trailing null character
- event.EventData=(new String(event.EventData)).trim().getBytes();
- //Wrap the data as an inputstream
- ByteArrayInputStream bais = new ByteArrayInputStream(event.EventData);
-
- //Finally construct a new event and return it
- return AEventFromXML.read(bais, currentStream);
- }
-
-/**
- * Requesting to read the previouse event from the server only appears
- * if we have already reached the beginning of the event buffer.
- * Only one current events are provided by the server at any time, thus we
- * will always throw a NoMoreEventsException. Handling of the exception is left
- * to the GUI interface.
- * @param currentEvent will be ignored
- * @return nothing as it will always raise an exception
- * @throws NoMoreEventsException
- */
- @Override
- protected AEvent readPrevious(AEventInfo currentEvent) throws NoMoreEventsException
- {
- throw new NoMoreEventsException("ONC/RPC server does not provide a previous event");
- }
-
- /**
- * Get a list of available streams from the server
- * @return the list of stream names
- * @throws InvalidEventSourceException if the server cannot be contacted
- */
- public synchronized Vector<String> getAvailableStreams() throws InvalidEventSourceException {
-
- //Prepare response structure
- Streams streams = new Streams();
-
-
- //Call the server
- try {
- client.call(Server.ONCRPC_GETSTREAMS_PROC, XdrVoid.XDR_VOID, streams);
- } catch (OncRpcException e) {
- throw new InvalidEventSourceException("Failed to get new stream list from server",e);
- }
- //We got stream names, so just return them
- return new Vector(Arrays.asList(streams.StreamNames));
- }
-
- /**
- * Set a new stream as current stream
- * @param streamName the name of the stream
- * @throws InvalidStreamException if the stream does not exist at the server
- */
- public synchronized void setStream(String streamName) throws InvalidStreamException,
- InvalidEventSourceException{
- //Check if the requested stream is available
- if (! getAvailableStreams().contains(streamName))
- throw new InvalidStreamException("Stream \""+streamName+"\" not available at server");
-
- //Store this as the new current stream
- currentStream = streamName;
- }
-
- /**
- * Get the currently selected stream
- * @return the name of the currently selected stream
- * @throws NoMoreEventsException if no streams are available
- * @throws InvalidEventSourceException if the list of streams can not be obtained
- */
- public synchronized String getStream() throws InvalidEventSourceException,
- NoMoreEventsException
- {
-
- //If stream name is not set, set it to first available by default
- if (currentStream==null){
- //Get list of streams
- Vector<String> streams = getAvailableStreams();
- //If there are none throw a "NoMoreEventsException"
- if (streams.size()<1) throw new NoMoreEventsException("No streams available");
- //Now set current stream as first one in list
- currentStream=streams.firstElement();
- //be verbose
- logger.info("Stream not set, using '"+currentStream+"'");
- }
-
- return currentStream;
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/event/oncrpc/Event.java b/graphics/AtlantisJava/src/atlantis/event/oncrpc/Event.java
deleted file mode 100644
index cf34cf74cb0..00000000000
--- a/graphics/AtlantisJava/src/atlantis/event/oncrpc/Event.java
+++ /dev/null
@@ -1,86 +0,0 @@
-package atlantis.event.oncrpc;
-import org.acplt.oncrpc.*;
-import java.io.IOException;
-
-/**
- * This structure declares the event as returned from a call
- * to the ONCRPC_GETEVENT_PROC.
- * @author Sebastian Boeser
- */
-public class Event implements XdrAble {
-
-
- /** False if no event exists for the requested stream at the server*/
- public boolean isAvailable;
- /** True if no new event exists at the server */
- public boolean isIdentical;
- /** True if the event data is compressed */
- public boolean isCompressed;
- /** The name fo the stream this event belongs to */
- public String StreamName;
- /** The number of the event */
- public long EventNumber;
- /** The number of the run */
- public long RunNumber;
- /** The event data as byte array */
- public byte [] EventData;
-
- /**
- * Constructor
- */
- public Event() {
- //Initialize variables
- isAvailable = false ;
- isIdentical = false ;
- isCompressed = false ;
- StreamName = "";
- EventNumber = -1;
- RunNumber = -1;
- EventData = null;
- }
-
- /**
- * Constructor that can be used with RPC client call
- * @param xdr the stream that holds the encoded event
- * @throws OncRpcException if decoding fails
- * @throws IOException
- */
- public Event(XdrDecodingStream xdr) throws OncRpcException, IOException {
- xdrDecode(xdr);
- }
-
- /**
- * Encode the information in XDR representation
- * @param xdr the stream to encode into
- * @throws OncRpcException if encoding fails
- * @throws IOException
- */
- public void xdrEncode(XdrEncodingStream xdr) throws OncRpcException, IOException {
- //Encode all fields in proper order into the stream
- xdr.xdrEncodeBoolean(isAvailable);
- xdr.xdrEncodeBoolean(isIdentical);
- xdr.xdrEncodeBoolean(isCompressed);
- xdr.xdrEncodeString(StreamName);
- xdr.xdrEncodeLong(EventNumber);
- xdr.xdrEncodeLong(RunNumber);
- xdr.xdrEncodeByteVector(EventData);
- }
-
- /**
- * Decode the information from XDR representation
- * @param xdr the stream to decode from
- * @throws OncRpcException if decoding fails
- * @throws IOException
- */
- public void xdrDecode(XdrDecodingStream xdr) throws OncRpcException, IOException {
- //Decode all fields in proper order from stream
- isAvailable = xdr.xdrDecodeBoolean();
- isIdentical = xdr.xdrDecodeBoolean();
- isCompressed = xdr.xdrDecodeBoolean();
- StreamName = xdr.xdrDecodeString();
- EventNumber = xdr.xdrDecodeLong();
- RunNumber = xdr.xdrDecodeLong();
- EventData = xdr.xdrDecodeDynamicOpaque();
- }
-
-}
\ No newline at end of file
diff --git a/graphics/AtlantisJava/src/atlantis/event/oncrpc/EventRequest.java b/graphics/AtlantisJava/src/atlantis/event/oncrpc/EventRequest.java
deleted file mode 100644
index fa60d782857..00000000000
--- a/graphics/AtlantisJava/src/atlantis/event/oncrpc/EventRequest.java
+++ /dev/null
@@ -1,79 +0,0 @@
-package atlantis.event.oncrpc;
-import org.acplt.oncrpc.*;
-import java.io.IOException;
-
-/**
- * Data structure as passed to the ONCRPC_GETEVENT_PROC
- * When sending an event request to the server, we have to specify the stream name,
- * along with informatian about events we already have. Negative event and run number
- * indicates we don't have any events yet.
- * @author Sebastian Boeser
- */
-public class EventRequest implements XdrAble {
-
- /** The event number of the event we already have */
- public long EventNumber;
- /** The run number of the event we already have */
- public long RunNumber;
- /** The name of the stream we are asking events from */
- public String StreamName;
-
- /**
- * Constructor
- */
- public EventRequest() {
- //Initialize values
- EventNumber = -1;
- RunNumber = -1;
- StreamName = "";
- }
-
- /**
- * Fully qualified constructor
- * @param eventNumber the event number of the event we already have
- * @param runNumber the run number of the event we already have
- * @param streamName the stream we are asking events from
- */
- public EventRequest(long eventNumber, long runNumber, String streamName){
- EventNumber = eventNumber;
- RunNumber = runNumber;
- StreamName = streamName;
- }
-
- /**
- * Construct an event request returned from an rpc call
- * @param xdr the stream to construct the request from
- * @throws OncRpcException if decoding fails
- * @throws IOException
- */
- public EventRequest(XdrDecodingStream xdr) throws OncRpcException, IOException {
- xdrDecode(xdr);
- }
-
- /**
- * Encode the information in XDR representation
- * @param xdr the stream to encode into
- * @throws OncRpcException if encoding fails
- * @throws IOException
- */
- public void xdrEncode(XdrEncodingStream xdr) throws OncRpcException, IOException {
- //Encode into stream in proper order
- xdr.xdrEncodeLong(EventNumber);
- xdr.xdrEncodeLong(RunNumber);
- xdr.xdrEncodeString(StreamName);
- }
-
- /**
- * Decode the information in XDR representation
- * @param xdr the stream to decode from
- * @throws OncRpcException if decoding fails
- * @throws IOException
- */
- public void xdrDecode(XdrDecodingStream xdr) throws OncRpcException, IOException {
- //Decode from stream in proper order
- EventNumber = xdr.xdrDecodeLong();
- RunNumber = xdr.xdrDecodeLong();
- StreamName = xdr.xdrDecodeString();
- }
-
-}
\ No newline at end of file
diff --git a/graphics/AtlantisJava/src/atlantis/event/oncrpc/Server.java b/graphics/AtlantisJava/src/atlantis/event/oncrpc/Server.java
deleted file mode 100644
index be83e8e71c9..00000000000
--- a/graphics/AtlantisJava/src/atlantis/event/oncrpc/Server.java
+++ /dev/null
@@ -1,47 +0,0 @@
-package atlantis.event.oncrpc;
-
-/**
- * A collection of constants used by the "ONCRPCServer" ONC/RPC program.
- * These constants need to match the respective definitons on the C++ server
- * side, where they are defined in JiveXML/JiveXML/ONCRPCServer.h
- * @author Sebastian Boeser
- */
-public interface Server {
-
- /**
- * The ID by which the server is identified
- */
- public static final int ONCRPCSERVERPROG = 200048965;
-
- /**
- * The version of the current server interface
- */
- public static final int ONCRPCSERVERVERS = 2;
-
- /**
- * The ID of the void procdure
- */
- public static final int ONCRPC_NULL_PROC = 0;
-
- /**
- * The ID of the getStatus procedure
- */
- public static final int ONCRPC_GETSTATUS_PROC = 1;
-
- /**
- * The ID of the getStreams procedure
- */
- public static final int ONCRPC_GETSTREAMS_PROC = 2;
-
-
- /**
- * The ID of the getEvent procedure
- */
- public static final int ONCRPC_GETEVENT_PROC = 3;
-
- /**
- * The ID of the SetNewEvent procedure - is not implemented in this client
- */
- //public static final int ONCRPC_SETEVENT_PROC = 4;
-}
-
diff --git a/graphics/AtlantisJava/src/atlantis/event/oncrpc/Streams.java b/graphics/AtlantisJava/src/atlantis/event/oncrpc/Streams.java
deleted file mode 100644
index b61d84cb973..00000000000
--- a/graphics/AtlantisJava/src/atlantis/event/oncrpc/Streams.java
+++ /dev/null
@@ -1,53 +0,0 @@
-package atlantis.event.oncrpc;
-import org.acplt.oncrpc.*;
-import java.io.IOException;
-
-/**
- * Data structure as returned from ONCRPC_GETSTREAMS_PROC is a list of stream names
- * available at the server.
- * @author Sebastian Boeser
- */
-public class Streams implements XdrAble {
-
- /** The array of stream names */
- public String [] StreamNames;
-
- /**
- * Constructor
- */
- public Streams() {
- //Array is empty by default, nothing to initialize
- }
-
- /**
- * Constructure that can be passed to an RPC client call
- * @param xdr the stream to decode from
- * @throws OncRpcException if decoding fails
- * @throws IOException
- */
- public Streams(XdrDecodingStream xdr) throws OncRpcException, IOException {
- xdrDecode(xdr);
- }
-
- /**
- * Encode the information in XDR representation
- * @param xdr the XDR stream to encode into
- * @throws OncRpcException if encoding fails
- * @throws IOException
- */
- public void xdrEncode(XdrEncodingStream xdr) throws OncRpcException, IOException {
- //Encode the stream name
- xdr.xdrEncodeStringVector(StreamNames);
- }
-
- /**
- * Decode the information from XDR representation
- * @param xdr the XDR stream to decode from
- * @throws OncRpcException if decoding fails
- * @throws IOException
- */
- public void xdrDecode(XdrDecodingStream xdr) throws OncRpcException, IOException {
- //Encode stream names
- StreamNames = xdr.xdrDecodeStringVector();
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/event/package.html b/graphics/AtlantisJava/src/atlantis/event/package.html
deleted file mode 100644
index b6788c40f43..00000000000
--- a/graphics/AtlantisJava/src/atlantis/event/package.html
+++ /dev/null
@@ -1,9 +0,0 @@
-<html>
-<head></head>
-<body>
-<p>This package holds all the main event base classes, such as
- the data type base AData or the event class AEvent. It also hold the event
- sourc managers and interfaces, as well as their concrete implementations.
-</p>
-</body>
-</html>
diff --git a/graphics/AtlantisJava/src/atlantis/event/xmlrpc/AClientXMLRPC.java b/graphics/AtlantisJava/src/atlantis/event/xmlrpc/AClientXMLRPC.java
deleted file mode 100755
index 2e795e433c1..00000000000
--- a/graphics/AtlantisJava/src/atlantis/event/xmlrpc/AClientXMLRPC.java
+++ /dev/null
@@ -1,244 +0,0 @@
-package atlantis.event.xmlrpc;
-
-import atlantis.utils.*;
-import java.net.URL;
-import java.net.MalformedURLException;
-import java.util.Vector;
-
-import org.apache.xmlrpc.client.XmlRpcClient;
-import org.apache.xmlrpc.client.AsyncCallback;
-import org.apache.xmlrpc.XmlRpcException;
-import org.apache.xmlrpc.client.XmlRpcClientConfigImpl;
-import org.apache.xmlrpc.client.TimingOutCallback;
-
-
-/**
- * Implementation of XMLRPC client communicating to the
- * server side running within the Athena framework - JiveXML C++ ulxmlrpcpp server,
- * Python Interactive server.
- *
- * @author Zdenek Maxa
- */
-public class AClientXMLRPC
-{
- private final static ALogger logger = ALogger.getLogger(AClientXMLRPC.class);
-
- private String methodName = "";
- private AsyncCallback caller = null;
-
- // timeout - default timeout delay for synchronous calls [ms]
- private int timeout = 6000;
-
-
-
-
- /**
- * Constructor for synchronous XMLRPC calls
- * @param method
- */
- public AClientXMLRPC(String method)
- {
- this.methodName = method;
- this.caller = null; // synchronous calls will be demanded
-
- } // AClientXMLRPC() ----------------------------------------------------
-
-
-
- /**
- * Constructor for asynchronous XMLRPC calls
- * @param method
- * @param caller
- */
- public AClientXMLRPC(String method, AsyncCallback caller)
- {
- this.methodName = method;
- this.caller = caller; // asynchronous calls
-
- } // AClientXMLRPC() ----------------------------------------------------
-
-
-
- public void setTimeout(int value)
- {
- this.timeout = value;
-
- } // setTimeout() -------------------------------------------------------
-
-
-
- /**
- * Asynchronous XMLRPC call, returns immediately and callback
- * caller is later invoked when result is available.
- * @param client
- * @param params
- * @throws ARemoteCallerException
- */
- private void asynchronousCallXMLRPCServer(XmlRpcClient client, Vector params)
- throws ARemoteCallerException
- {
- String msg = "";
-
- logger.debug("Asynchronous XMLRPC call ...");
- try
- {
- client.executeAsync(methodName, params, caller);
-
- }
- catch(Throwable t)
- {
- if(t instanceof XmlRpcException)
- {
- msg = "XMLRPC exception occured, performing the remote call failed.";
- }
- else
- {
- msg = "Unspecified exception occured, reason: " + t.getMessage();
- }
- logger.debug(msg, t);
- throw new ARemoteCallerException(msg);
- }
-
- } // asynchronousCallXMLRPCServer() -------------------------------------
-
-
-
- /**
- * Synchronous XMLRPC call. Implemented as asynchronous but timing-out
- * call so that we wait until the result is available. This way it prevents
- * Atlantis from hanging if remote server (Athena) crashes.
- * @param client
- * @param params
- * @return
- * @throws ARemoteCallerException
- */
- private String synchronousCallXMLRPCServer(XmlRpcClient client, Vector params)
- throws ARemoteCallerException
- {
- String msg = "";
- String result = null;
-
- logger.debug("Synchronous timing-out XMLRPC call (timeout " +
- timeout / 1000 + "s) ...");
-
- TimingOutCallback callback = new TimingOutCallback(timeout);
- try
- {
- client.executeAsync(methodName, params, callback);
- }
- catch(XmlRpcException xmle)
- {
- msg = "XMLRPC exception occured, performing the remote call failed.";
- logger.debug(msg, xmle);
- throw new ARemoteCallerException(msg);
- }
-
-
- try
- {
- result = (String) callback.waitForResponse();
-
- // no error, result should be event data - all well
- logger.debug("Performing timing out XMLRPC call successful.");
- }
- catch(Throwable t)
- {
- if(t instanceof InterruptedException)
- {
- msg = "The request was interrupted, timed out after " +
- timeout / 1000 + "s, try increasing the timer.";
- }
- else if(t instanceof TimingOutCallback.TimeoutException)
- {
- msg = "No response was received after waiting " +
- timeout / 1000 + "s, try increasing the timer.";
- }
- else
- {
- msg = "An error was returned by the server, reason: " + t.getMessage();
- }
- logger.debug(msg, t);
- throw new ARemoteCallerException(msg);
- }
-
- return result;
-
- } // synchronousCallXMLRPCServer() --------------------------------------
-
-
-
- /**
- * Main method calling remote server methods via XMLRPC
- *
- * @param serverName - name of the XMLRPC server to call method on
- * @param port - where XMLRPC runs
- * @param params - Vector containing either command to execute,
- * name of a remote variable to get its value or expression to
- * process (to change some variables's value)
- * @return String - result
- * @throws ARemoteCallerException
- */
- public String callXMLRPCServer(String serverName, int port, Vector params)
- throws ARemoteCallerException
- {
-
- XmlRpcClient client = null;
- String result = null;
- String msg = null; // logging temporary variable
-
- msg = "Calling " + serverName + ":" + port;
- logger.info(msg);
-
-
- // create instance of XMLRPC client
- try
- {
- // Vector type is only acceptable for XmlRpcClient.execute() /
- // .executeAsync()
- // String is expected on the remote side by C++ ulxmlrpcpp server
- // String, among others, is accepted by Python server as well
-
- // throws MalformedURLException
- XmlRpcClientConfigImpl config = new XmlRpcClientConfigImpl();
- config.setServerURL(new URL(serverName + ":" + port));
- client = new XmlRpcClient();
- client.setConfig(config);
- logger.debug("XMLRPC client instantiated successfully.");
- }
- catch(Throwable t)
- {
- if(t instanceof MalformedURLException)
- {
- msg = "Could not create XMLRPC client, bad address " +
- serverName + ":" + port + "\n" +
- "reason: " + t.getMessage();
- }
- else
- {
- msg = "Unspecified exception occured\n" +
- "reason: " + t.getMessage();
- }
-
- logger.debug(msg, t);
- throw new ARemoteCallerException(msg);
- }
-
-
- if(caller != null)
- {
- // perform asynchronous XMLRPC call, returns immediately
- asynchronousCallXMLRPCServer(client, params);
- }
- else
- {
- // synchronous call, timing out synchronous call
- result = synchronousCallXMLRPCServer(client, params);
- }
-
- client = null;
- return result;
-
- } // callXMLRPCServer() -------------------------------------------------
-
-
-} // class AClientXMLRPC ====================================================
\ No newline at end of file
diff --git a/graphics/AtlantisJava/src/atlantis/event/xmlrpc/ARemoteCallerException.java b/graphics/AtlantisJava/src/atlantis/event/xmlrpc/ARemoteCallerException.java
deleted file mode 100755
index b6958f4d1ea..00000000000
--- a/graphics/AtlantisJava/src/atlantis/event/xmlrpc/ARemoteCallerException.java
+++ /dev/null
@@ -1,22 +0,0 @@
-package atlantis.event.xmlrpc;
-
-import atlantis.utils.*;
-
-
-/**
- *
- * Exception thrown after errors occured during calls
- * to remote server methods (within Athena) via XMLRPC
- *
- * @author Zdenek Maxa
- */
-public class ARemoteCallerException extends AAtlantisException
-{
- public ARemoteCallerException(String msg)
- {
- super("Exception while calling remote procedure.\n" + msg);
-
- } // ARemoteCallerException() -------------------------------------------
-
-
-} // class ARemoteCallerException ===========================================
diff --git a/graphics/AtlantisJava/src/atlantis/event/xmlrpc/AServerXMLRPC.java b/graphics/AtlantisJava/src/atlantis/event/xmlrpc/AServerXMLRPC.java
deleted file mode 100644
index 8d481b260b6..00000000000
--- a/graphics/AtlantisJava/src/atlantis/event/xmlrpc/AServerXMLRPC.java
+++ /dev/null
@@ -1,43 +0,0 @@
-package atlantis.event.xmlrpc;
-
-import atlantis.utils.*;
-import java.io.IOException;
-import org.apache.xmlrpc.XmlRpcException;
-import org.apache.xmlrpc.webserver.WebServer;
-import org.apache.xmlrpc.server.XmlRpcServer;
-import org.apache.xmlrpc.server.PropertyHandlerMapping;
-
-/**
- *
- * @author Adam Davison
- */
-public class AServerXMLRPC {
-
- private static ALogger logger = ALogger.getLogger(AServerXMLRPC.class);
-
- private WebServer m_ws;
-
- public AServerXMLRPC(int port, Class handler) throws XmlRpcException {
-
- logger.debug("Attempting to create XMLRPC server on port " + port);
- logger.debug("Serving requests to handler of type " + handler.getName());
-
- m_ws = new WebServer(port);
- XmlRpcServer xmlRpcServer = m_ws.getXmlRpcServer();
- PropertyHandlerMapping phm = new PropertyHandlerMapping();
- phm.addHandler(handler.getName(), handler);
- xmlRpcServer.setHandlerMapping(phm);
-
- logger.debug("XMLRPC server created successfully");
-
- }
-
- public void start() throws IOException {
-
- logger.debug("Attempting to start XMLRPC server");
- m_ws.start();
- logger.info("XMLRPC server started");
-
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/event/xmlrpc/AServerXMLRPCEventSource.java b/graphics/AtlantisJava/src/atlantis/event/xmlrpc/AServerXMLRPCEventSource.java
deleted file mode 100644
index f3bf0fe2c68..00000000000
--- a/graphics/AtlantisJava/src/atlantis/event/xmlrpc/AServerXMLRPCEventSource.java
+++ /dev/null
@@ -1,146 +0,0 @@
-package atlantis.event.xmlrpc;
-
-import atlantis.utils.*;
-import atlantis.canvas.ACanvas;
-import atlantis.data.AEventFromXML;
-import atlantis.event.AEvent;
-import atlantis.event.AEventManager;
-import atlantis.event.AEventSource;
-import atlantis.globals.AGlobals;
-import atlantis.graphics.encoders.AImageEncoder;
-import java.io.ByteArrayInputStream;
-
-/**
- *
- * @author Adam Davison
- */
-public class AServerXMLRPCEventSource implements AEventSource{
-
- private static ALogger logger = ALogger.getLogger(AServerXMLRPCEventSource.class);
-
- private AEventManager m_aem;
- private ACanvas m_canv;
- private AImageEncoder m_ie;
-
- private AEvent m_event = null; // Current event
- private String m_sourcename = ""; // Source name
-
- private NavigationMode eventNavigationMode = NavigationMode.PUSH;
-
- public AServerXMLRPCEventSource() {
- m_aem = AEventManager.instance();
- m_canv = ACanvas.getCanvas();
- m_ie = new AImageEncoder();
- }
-
- public String getVersion() {
- return AGlobals.instance().getVersion();
- }
-
- public boolean isReady() {
- return true;
- }
-
- public boolean shutdown() {
- logger.info("Exiting atlantis...");
- System.exit(0);
- return true;
- }
-
- public NavigationMode getNavigationMode() {
- return eventNavigationMode;
- }
-
- public boolean supportsNavigationMode(NavigationMode mode) {
- if(mode == NavigationMode.PUSH)
- return true;
- return false;
- }
-
- public void setNavigationMode(NavigationMode mode) throws InvalidEventSourceException {
- if(mode != NavigationMode.PUSH)
- throw new InvalidEventSourceException("Mode '"+mode.name()+"' not supported by current source");
- eventNavigationMode = mode;
- }
-
- private void setEventFromBytes(byte[] eventdata, String sourcename) throws Exception {
- AEvent e = AEventFromXML.read(new ByteArrayInputStream(eventdata), sourcename);
-
- m_event = e;
- m_sourcename = sourcename;
-
- // Force update from event manager
- m_aem.setEventSource(this);
- m_aem.nextEvent();
- }
-
- private byte[] getSingleImage(int w, int h, String type, double s) throws Exception {
- if (type.equalsIgnoreCase("png")) {
- return m_ie.getPNGData(w, h);
- } else if (type.equalsIgnoreCase("scaledpng")) {
- return m_ie.getScaledPNGData(w, h, s);
- }
-
- throw new Exception("Unknown image format: " + type);
- }
-
- private byte[] getSingleImageAspect(int w, String type, double s) throws Exception {
- int h = m_canv.getRespectiveHeight(w);
- return getSingleImage(w, h, type, s);
- }
-
- public byte[][] generateDefaultImages(byte[] eventdata, String sourcename,
- int width, double thumb_scale) {
-
- byte ret[][] = new byte[2][];
-
- try {
- setEventFromBytes(eventdata, sourcename);
- ret[0] = getSingleImageAspect(width, "png", 0.0);
- ret[1] = getSingleImageAspect(width, "scaledpng", thumb_scale);
- } catch (Exception e) {
- logger.error("Error while handling request to generateDefaultImages()", e);
- return null;
- }
-
- return ret;
- }
-
- public AEvent nextEvent() throws NoMoreEventsException, InvalidEventSourceException, ReadEventException {
- if (m_event == null) {
- throw new InvalidEventSourceException();
- }
- return m_event;
- }
-
- public AEvent previousEvent() throws NoMoreEventsException, InvalidEventSourceException, ReadEventException {
- throw new NoMoreEventsException();
- }
-
- public String getSourceName() {
- return m_sourcename;
- }
-
- /*public byte[][] generateImages(byte[] eventdata, String sourcename,
- Integer nimgs, Object[] w, Object[] h, Object[] type, Object[] s) {
-
- byte ret[][] = new byte[nimgs][];
-
- try {
- setEventFromBytes(eventdata, sourcename);
-
- for (int i = 0; i < nimgs; i++) {
- // Handle cast of s better here
- ret[i] = getSingleImage((Integer) (w[i]), (Integer) (h[i]),
- (String) (type[i]), (Double) (s[i]));
- }
-
- } catch (Exception e) {
- logger.error("Error while handling request to generateImages()", e);
- return null;
- }
-
- return ret;
- }*/
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/event/xmlrpc/AXMLRPCEventSource.java b/graphics/AtlantisJava/src/atlantis/event/xmlrpc/AXMLRPCEventSource.java
deleted file mode 100644
index 29967b6e310..00000000000
--- a/graphics/AtlantisJava/src/atlantis/event/xmlrpc/AXMLRPCEventSource.java
+++ /dev/null
@@ -1,238 +0,0 @@
-
-package atlantis.event.xmlrpc;
-
-import atlantis.event.*;
-import atlantis.data.AEventFromXML;
-import atlantis.Atlantis;
-import atlantis.event.AEventSource.InvalidEventSourceException;
-import atlantis.event.AEventSource.NoMoreEventsException;
-import atlantis.event.AEventSource.ReadEventException;
-
-import atlantis.utils.ALogger;
-
-import java.io.ByteArrayInputStream;
-import java.net.InetAddress;
-import java.net.UnknownHostException;
-import java.util.Vector;
-
-
-/**
- * Implements an event source retrieving events from an XMLRCP server.
- * By implementing a ABufferedEventSource, a number of previous events will be
- * available to the user. Care is taken to clear the buffer in case we run into
- * memory problems.
- *
- * @author sboeser
- */
-
-public class AXMLRPCEventSource extends ABufferedEventSource {
-
- //The logger
- private static final ALogger logger = ALogger.getLogger(AXMLRPCEventSource.class);
-
- //The XMLRPC client
- private AClientXMLRPC XMLRPCClient = null;
- //The Method to call on the server side
- private static final String GETEVENTDATA = "getEventData";
- //The default timeout value in milliseconds for calling the server
- private static final int DEFAULT_TIMEOUT = 2000;
- //The name of the local machine (send along with event request)
- private String localMachineName = "<unknown>";
- //The name and port number of the remote host
- private String remoteMachineName = null;
- //The port number to which we should connect
- private Integer portNumber = null;
- //The timeout for a request
- private Integer timeOut = null;
-
- /**
- * Constructor with the server name and port as a string value
- * @param sourceName
- * @throws InvalidEventSourceException
- */
- public AXMLRPCEventSource(String sourceName) throws InvalidEventSourceException {
-
- //Remove any leading "xmlrpc://" indicator
- sourceName = sourceName.replaceFirst("xmlrpc://", "");
- //try to split sourceName in serverName:port pair
- String[] sourceParams = sourceName.split(":");
- //Do some checks
- if (sourceParams.length != 2)
- throw new InvalidEventSourceException("Invalid <server:port> specification: "+sourceName);
-
- //Try to get the port number
- int port = -1;
- try {
- port = Integer.decode(sourceParams[1]);
- } catch (NumberFormatException nfe){
- throw new InvalidEventSourceException("Invalid port number: "+sourceParams[1]);
- }
-
- if (port < 0)
- throw new InvalidEventSourceException("Invalid port number: "+port);
-
- //Now call the fully qualified constructor with the defaul timeout value
- CreateXMLRPCEventSource(sourceParams[0],port,DEFAULT_TIMEOUT);
-
- }
-
- /**
- * Constructor with server name, port number and timeout
- * @param serverName the name or IP-address of the remote server
- * @param port the port number to which the request is send
- * @param timeout a timeout value in milliseconds
- * @throws InvalidEventSourceException
- */
- public AXMLRPCEventSource(String serverName, int port, int timeout)
- throws InvalidEventSourceException {
- //Call common constructor entry
- CreateXMLRPCEventSource(serverName,port,timeout);
- }
-
- /**
- * @return a string of the form xmlrpc://servername:port
- */
- public String getSourceName() {
- return "xmlrpc://"+remoteMachineName+":"+portNumber;
- }
-
- /**
- * @param mode event navigation mode
- * @return true if the requested mode is supported by this source
- */
- public boolean supportsNavigationMode(NavigationMode mode) {
- if(mode == NavigationMode.SEQUENTIAL)
- return true;
- return false;
- }
-
- /**
- * Common entry point for all constructors
- * @param serverName the name or IP-address of the remote server
- * @param port the port number to which the request is send
- * @param timeout a timeout value in milliseconds
- * @throws InvalidEventSourceException
- */
- private void CreateXMLRPCEventSource(String serverName, int port, int timeout)
- throws InvalidEventSourceException {
-
- //Store the input values
- remoteMachineName = serverName;
- portNumber = port;
- timeOut = timeout;
-
- //try to obtain the name of the local machine
- try {
- localMachineName = InetAddress.getLocalHost().getHostName();
- } catch (UnknownHostException ex) {
- //Can't get name of local host
- String msg = "Unable to obtain local machine name, using \""
- + localMachineName +"\" instead";
- logger.error(msg);
- } catch(Exception ex) {
- //Rethrow everything else as invalid source exception
- throw new InvalidEventSourceException("Exception trying to obtain local machine name",ex);
- }
-
- //Finally create a new AClientXMLRPC object
- XMLRPCClient = new AClientXMLRPC(GETEVENTDATA);
-
- }
-
- /**
- * Read the next event from the server
- * @param currentEvent the current event
- * @return the next event
- * @throws NoMoreEventsException
- * @throws InvalidEventSourceException
- * @throws ReadEventException
- */
- @Override
- protected AEvent readNext(AEventInfo currentEvent) throws NoMoreEventsException,
- InvalidEventSourceException,
- ReadEventException {
- //Be verbose
- logger.info("Call to remote server xmlrpc://" + remoteMachineName + ":" + portNumber.toString());
-
- //send the name of the local machine to the JiveXML server
- Vector<String> parameters = new Vector();
- parameters.add(localMachineName);
-
- //record calling time
- long startTime = System.currentTimeMillis();
-
- //The XMLRPC client will return data as a string
- String eventXMLData = null;
-
- // perform the remote call
- try {
- eventXMLData = XMLRPCClient.callXMLRPCServer("http://"+remoteMachineName, portNumber, parameters);
- } catch (ARemoteCallerException ex) {
- //An error occured
- String msg = "readNext(): Exception while calling remote server";
- logger.error(msg,ex);
- //rethrow
- throw new InvalidEventSourceException(msg, ex);
- }
-
- //do some statistics
- long callDuration = System.currentTimeMillis() - startTime;
- logger.debug("Received " + eventXMLData.length() + " bytes in " + callDuration + " ms");
-
-
- //If there is just no new event, we should get back an empty string
- if (eventXMLData.length() == 0) {
- throw new NoMoreEventsException("No event available from the server (yet)"); // something was received, going to process the result
- }
- if (!(eventXMLData.startsWith("<?xml"))) {
- String msg = "Invalid event data received from JiveXML server";
- logger.error(msg);
- throw new ReadEventException(msg);
- }
-
-
-
- //So it seems we got something worth processing
- logger.info("Received data from remote server, going to process it ...");
-
- // Wrap the string as an inputstream
- ByteArrayInputStream bais = new ByteArrayInputStream(eventXMLData.getBytes());
-
- //Construct a new event
- AEvent event = AEventFromXML.read(bais, remoteMachineName+":"+portNumber);
-
- /**
- * The XMLRPC server is not clever enough to return no event if there is no
- * new one. In order to avoid filling the buffer with identical events, we
- * therefore check here if we don't already have that event, and throw a
- * NoMoreEventsException in case we do.
- */
- if (event.equals(currentEvent)){
- String msg = "Already have event "+event.getEventNumber()+" in run "
- + event.getRunNumber() + " - ignored!";
- throw new NoMoreEventsException(msg);
- }
-
-
- //Now we are sure we have a next event, return it
- return event;
-
- }
-
-/**
- * Requesting to read the previous event from the server only appears
- * if we have already reached the beginning of the event buffer.
- * Only one current events are provided by the server at any time, thus we
- * will always throw a NoMoreEventsException. Handling of the exception is left
- * to the GUI interface, and may e.g be ignored in loop mode.
- * @param currentEvent will be ignored
- * @return nothing as it will always raise an exception
- * @throws NoMoreEventsException
- */
- @Override
- protected AEvent readPrevious(AEventInfo currentEvent) throws NoMoreEventsException
- {
- throw new NoMoreEventsException("XMLRPC server does not provide a previous event");
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/geometry/AAtlasDetector.java b/graphics/AtlantisJava/src/atlantis/geometry/AAtlasDetector.java
deleted file mode 100755
index bf8b9a267fb..00000000000
--- a/graphics/AtlantisJava/src/atlantis/geometry/AAtlasDetector.java
+++ /dev/null
@@ -1,119 +0,0 @@
-package atlantis.geometry;
-
-import java.util.regex.Pattern;
-
-import atlantis.config.ADefaultValues;
-import atlantis.utils.ALogger;
-
-
-/**
- * AAtlasDetector
- * contains one instance of
- * ABoxDetectors (which contains all instances of ABoxDetector) (MDT,RPC in barrel)
- * ATrapezoidDetectors (which contains all instances of ATrapezoidDetector) (MDT,TGC endcap)
- * AGeneralDetectors (which contains all instances of AGeneralPathDetector,
- * ADiscDetector, ARectangleDetector) (all others)
- */
-public class AAtlasDetector extends ADetectorSystem
-{
- private static ALogger logger = ALogger.getLogger(AAtlasDetector.class);
- private static ADetectorSystem theDetector;
-
- public AAtlasDetector(String geomIdCalo)
- {
- super(new ADetectors[]
- {
- new AGeneralDetectors(
- new AGeometryFromXMLReader().readDetectorGeometryFromXML(geomIdCalo))
- });
-
- logger.info("Using geometry file: " + geomIdCalo);
-
- setGeometryName(geomIdCalo);
-
- } // AAtlasDetector(String fileName) ------------------------------------
-
-
-
- public AAtlasDetector(String geomIdCalo, String geomMuon)
- {
- super(new ADetectors[]
- {
- new ABoxDetectors(
- new AGeometryFromXMLReader().readDetectorGeometryFromXML(geomMuon)),
- new ATrapezoidDetectors(
- new AGeometryFromXMLReader().readDetectorGeometryFromXML(geomMuon)),
- new AGeneralDetectors(
- new AGeometryFromXMLReader().readDetectorGeometryFromXML(geomMuon)),
- new AGeneralDetectors(
- new AGeometryFromXMLReader().readDetectorGeometryFromXML(geomIdCalo))
- });
-
- logger.info("Using geometry file: " + geomIdCalo);
- logger.info("Using geometry file: " + geomMuon);
-
- setGeometryName(geomIdCalo);
-
- } // AAtlasDetector(String fileName, String muFileName) -----------------
-
-
-
- private static void setGeometryName(String absFileName)
- {
- // default geometry file, shall always be AGeometry.xml
- // arbitrary, named geometry file, geometry name after '_' character
- // (but there is also AGeometryTB.xml)
- String name = "AGeometry";
- String ext = ".xml";
- String pattern = ".*" + name + "_?.*" + ext;
-
- if(Pattern.compile(pattern).matcher(absFileName).matches())
- {
- int s = absFileName.lastIndexOf(name);
- int e = absFileName.lastIndexOf(ext);
- String r = absFileName.substring(s + name.length(), e);
- if(r.startsWith("_"))
- {
- // arbitrary, named geometry
- geometryName = r.substring(1); // without leading _
- ADefaultValues.set("GeometryName", geometryName);
- }
- else if("".equals(r))
- {
- // default geometry (no name given: "")
- geometryName = "<default>";
- ADefaultValues.set("GeometryName", "");
- }
- else
- {
- geometryName = r;
- ADefaultValues.set("GeometryName", geometryName);
- }
- }
- else
- {
- logger.warn("Geometry name not matching regular expression: " +
- pattern + "\n geometry name will be: n/a");
- geometryName = "n/a";
- }
-
- } // setGeometryName() --------------------------------------------------
-
-
- /**
- * @return the detector
- */
- public static ADetectorSystem getDetector() {
- return theDetector;
- }
-
-
- /**
- * @param theDetector the ATLAS detector geometry to be used
- */
- public static void setDetector(ADetectorSystem theDetector) {
- AAtlasDetector.theDetector = theDetector;
- }
-
-
-} // class class AAtlasDetector =============================================
diff --git a/graphics/AtlantisJava/src/atlantis/geometry/ABarrelCalorimeterDetector.java b/graphics/AtlantisJava/src/atlantis/geometry/ABarrelCalorimeterDetector.java
deleted file mode 100755
index 870a7d46f7e..00000000000
--- a/graphics/AtlantisJava/src/atlantis/geometry/ABarrelCalorimeterDetector.java
+++ /dev/null
@@ -1,284 +0,0 @@
-package atlantis.geometry;
-
-import atlantis.graphics.ACoord;
-import atlantis.graphics.AClipper;
-import atlantis.projection.AProjectionYX;
-import atlantis.utils.AMath;
-
-/**
- * Class representing a calorimeter part in the barrel section of ATLAS.
- *
- * @author Eric Jansen
- */
-public class ABarrelCalorimeterDetector extends ACalorimeterDetector {
-
- /**
- * Constructs a new barrel calorimeter object.
- * @param name String name of the object
- * @param color String name of the color used to draw this object
- * @param sampling int sampling of this calorimeter part
- * @param region int region of this calorimeter part
- * @param rMin double inner radius
- * @param rMax double outer radius
- * @param zMin double inner z
- * @param zMax double outer z
- * @param eta0 double start of the first cell in eta
- * @param deta double size of a cell in eta
- * @param neta int number of cells in eta
- * @param meta int eta index of the first cell
- * @param phi0 double start of the first cell in phi
- * @param nphi int number of cells in phi
- */
- public ABarrelCalorimeterDetector(String name, String color, int sampling, int region,
- double rMin, double rMax, double zMin, double zMax,
- double eta0, double deta, int neta, int meta,
- double phi0, int nphi) {
- super(name, color);
-
- // Just to be sure we take absolute values here.
- this.sampling = Math.abs(sampling);
- this.region = Math.abs(region);
-
- this.rMin = rMin;
- this.rMax = rMax;
- this.zMin = zMin;
- this.zMax = zMax;
- this.eta0 = eta0;
- this.deltaEta = deta;
- this.numEta = neta;
- this.minEta = meta;
- this.phi0 = Math.toRadians(phi0);
- this.numPhi = nphi;
- this.deltaPhi = 2.*Math.PI/numPhi;
-
- this.detEtaMin = AMath.etaAbs(this.zMax, this.rMax);
- this.detEtaMax = AMath.etaAbs(this.zMin, this.rMin);
-
- if (this.eta0 <= 0.0) {
- this.zMin = -this.zMax;
- this.detEtaMin = -this.detEtaMax;
- }
-
- // This one is used for clipping the cell geometry in rho-z.
- this.clipper = new AClipper(this.zMin, this.zMax, this.rMin, this.rMax);
-
- // These arrays are used by the getDetectorIndex() method in ACalorimeterData.
- // They provide fast mapping of hits to detectors.
- if (this.name.indexOf("LAr") >= 0 && this.sampling < lar[1].length
- && this.region < lar[1][this.sampling].length) {
-
- lar[1][this.sampling][this.region] = detectors.indexOf(this);
- } else if (this.name.equals("TILE Barrel") && this.sampling < tile.length) {
- tile[this.sampling] = detectors.indexOf(this);
-
- } else if (this.name.equals("Extended TILE") && this.sampling < tile_ext.length) {
- tile_ext[this.sampling] = detectors.indexOf(this);
-
- } else {
- System.out.println("Unknown calorimeter object: '" + this.name + "'"
- + " some hits might not be displayed correctly.");
- }
- }
-
- /**
- * Returns the y-x geometry of the full calorimeter part.
- * @return ACoord polygons representing geometry
- */
- protected ACoord getYXUser() {
- if (!globals.getUseOpenGL()) {
- int numPoints = 2 * (numPhi + 1);
- double[][] hv = new double[2][numPoints];
- for (int i = 0; i < numPhi + 1; i++) {
- hv[0][i] = rMin * Math.cos(phi0 + i * deltaPhi);
- hv[1][i] = rMin * Math.sin(phi0 + i * deltaPhi);
- hv[0][numPhi + 1 + i] = rMax * Math.cos(phi0 - i * deltaPhi);
- hv[1][numPhi + 1 + i] = rMax * Math.sin(phi0 - i * deltaPhi);
- }
- return new ACoord(hv);
- } else {
- return new ACoord(generateAnnulusTris(numPhi, phi0, rMin, rMax));
- }
- }
-
- /**
- * Returns the rho-z geometry of the full calorimeter part.
- * @return ACoord polygons representing geometry
- */
- protected ACoord getRZUser() {
- double[] h, v;
-
- double etaMax = eta0 + numEta * deltaEta;
- double etaMin;
- if (eta0 <= 0.0) {
- etaMin = -etaMax;
- } else {
- etaMin = eta0;
- }
-
- // Calculate the polygon in the positive h and v.
- if (name.indexOf("TILE") >= 0) {
- h = new double[] {zMax, zMin, zMin, zMax};
- v = new double[] {rMax, rMax, rMin, rMin};
- } else {
- double z0 = rMax*Math.sinh(etaMax);
- double z1 = rMax*Math.sinh(etaMin);
- double z2 = rMin*Math.sinh(etaMin);
- double z3 = rMin*Math.sinh(etaMax);
-
- h = new double[] {z0, z1, z2, z3};
- v = new double[] {rMax, rMax, rMin, rMin};
- }
-
- // Clip the polygon.
- ACoord coord = clipper.clipPolygon(h, v, h.length);
-
- // Copy it to negative v.
- coord = new ACoord(coord, coord.mirrorV());
- if (eta0 > 0.0) {
- // If it doesn't continue through h=0, copy it to negative h.
- coord = new ACoord(coord, coord.mirrorH());
- }
-
- return coord;
- }
-
- /**
- * Returns the phi-rho geometry of the full calorimeter part.
- * @return ACoord polygons representing geometry
- */
- protected ACoord getFRUser() {
- double[][] hv = new double[2][];
-
- hv[0] = new double[] {rMin, rMax, rMax, rMin};
- hv[1] = new double[] {360., 360., 0., 0.};
-
- return new ACoord(hv);
- }
-
- /**
- * Returns the y-x geometry of a specific cell in this calorimeter part.
- * @param eta int eta index of cell
- * @param phi int phi index of cell
- * @return ACoord polygon representing cell geometry
- */
- public ACoord getYXCell(int eta, int phi) {
- if (parameterStore.get("YX", "Mode").getI() != AProjectionYX.MODE_STANDARD) return ACoord.NO_DATA;
- double[][] hv = new double[2][];
- double phiMin = phi0+phi*deltaPhi;
- double phiMax = phiMin+deltaPhi;
-
- hv[0] = new double[] {rMax*Math.cos(phiMin), rMax*Math.cos(phiMax),
- rMin*Math.cos(phiMax), rMin*Math.cos(phiMin)};
- hv[1] = new double[] {rMax*Math.sin(phiMin), rMax*Math.sin(phiMax),
- rMin*Math.sin(phiMax), rMin*Math.sin(phiMin)};
-
- return new ACoord(hv);
- }
-
- /**
- * Returns the rho-z geometry of a specific cell in this calorimeter part.
- * @param eta int eta index of cell
- * @param phi int phi index of cell
- * @param side int sign of the z coordinate of cell
- * @return ACoord polygon representing cell geometry
- */
- public ACoord getRZCell(int eta, int phi, int side) {
- double[][] hv = new double[2][];
- int sign = getRSign(phi);
-
- if (side != 0) side /= Math.abs(side);
-
- if (name.indexOf("TILE") >= 0) {
- // Outer layer of TILE has eta increments of two.
- if (sampling == 2) eta = minEta + (eta-minEta)/2;
-
- double etaMin = eta0+(eta-minEta)*deltaEta;
- double etaMax = etaMin+deltaEta;
-
- if (name.indexOf("Barrel") >= 0 && sampling == 1) {
- double dr = (rMax-rMin);
- double r0 = rMin;
- double r1 = rMin+dr/2.;
- double r2 = rMax;
- double z0 = (rMin+dr/4.) * Math.sinh(etaMin);
- double z1 = (rMax-dr/4.) * Math.sinh(etaMin);
- double z2 = (rMin+dr/4.) * Math.sinh(etaMax);
- double z3 = (rMax-dr/4.) * Math.sinh(etaMax);
-
- if (eta == this.minEta && this.zMin > 0) z0 = z1 = this.zMin;
- if (eta == this.minEta + this.numEta - 1) z2 = z3 = this.zMax;
-
- hv[0] = new double[] {z3, z1, z1, z0, z0, z2, z2, z3};
- hv[1] = new double[] {r2, r2, r1, r1, r0, r0, r1, r1};
- } else {
- double zMin = (rMin+rMax)/2. * Math.sinh(etaMin);
- double zMax = (rMin+rMax)/2. * Math.sinh(etaMax);
-
- if (eta == this.minEta && this.zMin > 0)zMin = this.zMin;
- if (eta == this.minEta + this.numEta - 1) zMax = this.zMax;
-
- hv[0] = new double[] {zMax, zMin, zMin, zMax};
- hv[1] = new double[] {rMax, rMax, rMin, rMin};
- }
- } else if (name.indexOf("LAr") >= 0) {
- double etaMin = eta0+(eta-minEta)*deltaEta;
- double etaMax = etaMin+deltaEta;
-
- hv[0] = new double[] {rMax*Math.sinh(etaMax), rMax*Math.sinh(etaMin),
- rMin*Math.sinh(etaMin), rMin*Math.sinh(etaMax)};
- hv[1] = new double[] {rMax, rMax, rMin, rMin};
- } else {
- return ACoord.NO_DATA;
- }
-
- // Clip the cell and send it to the right quadrant.
- ACoord coord = clipper.clipPolygon(hv[0], hv[1], hv[0].length);
- for (int i=0; i<coord.hv[0][0].length; i++) {
- coord.hv[0][0][i] *= side;
- coord.hv[1][0][i] *= sign;
- }
-
- return coord;
- }
-
- /**
- * Returns the eta-phi geometry of a specific cell in this calorimeter part.
- * @param eta int eta index of cell
- * @param phi int phi index of cell
- * @param side int sign of the z coordinate of cell
- * @return ACoord polygon representing cell geometry
- */
- public ACoord getVPCell(int eta, int phi, int side) {
- double[][] hv = new double[2][];
- double etaMin = eta0+(eta-minEta)*deltaEta;
- double etaMax = etaMin+deltaEta;
- double phiMin = Math.toDegrees(phi0 + phi*deltaPhi);
- double phiMax = phiMin + Math.toDegrees(deltaPhi);
-
- side /= Math.abs(side);
-
- hv[0] = new double[] {side*etaMax, side*etaMin, side*etaMin, side*etaMax};
- hv[1] = new double[] { phiMax, phiMax, phiMin, phiMin};
-
- return new ACoord(hv);
- }
-
- /**
- * Returns the eta value of the center (in eta) of a cell.
- * @param eta int eta index of the cell
- * @param side int sign of the z coordinate of the cell
- * @return double eta value
- */
- public double getEta(int eta, int side) {
- if (side < 0) {
- return -getEta(eta, -side);
- } else {
- if (name.indexOf("TILE") >= 0) {
- // Outer layer of TILE has eta increments of two.
- if (sampling == 2) eta = minEta + (eta-minEta)/2;
- }
-
- return eta0 + (eta - minEta + 0.5) * deltaEta;
- }
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/geometry/ABarrelSiliconDetector.java b/graphics/AtlantisJava/src/atlantis/geometry/ABarrelSiliconDetector.java
deleted file mode 100755
index 14e53e77d05..00000000000
--- a/graphics/AtlantisJava/src/atlantis/geometry/ABarrelSiliconDetector.java
+++ /dev/null
@@ -1,276 +0,0 @@
-package atlantis.geometry;
-
-import atlantis.canvas.AWindow;
-import atlantis.data.AS3DData;
-import atlantis.graphics.ACoord;
-import atlantis.graphics.AGraphics;
-import atlantis.graphics.colormap.AColorMap;
-import atlantis.parameters.AParameter;
-import atlantis.projection.AProjection2D;
-import atlantis.projection.AProjectionFR;
-import atlantis.projection.AProjectionFZ;
-import atlantis.projection.AProjectionRZ;
-import atlantis.projection.AProjectionYX;
-import java.awt.Color;
-import java.util.ArrayList;
-import java.util.List;
-
-/**
- * Class representing a pixel/SCT barrel detector part.
- * Also implements methods to draw more detailed structure of the detector.
- *
- * @author Eric Jansen
- */
-public class ABarrelSiliconDetector extends ADetector {
-
- private static List detectors = null;
-
- protected int layer;
- protected double length;
- protected double width;
- protected double thickness;
- protected int numZ;
- protected int numPhi;
- protected double tilt;
- protected double r0;
- protected double phi0;
- protected double zMin;
- protected double zMax;
-
- protected double deltaPhi;
- protected double deltaZ;
- protected double rMin;
- protected double rMax;
-
- public ABarrelSiliconDetector(String name, String color, int layer, double length, double width, double thickness,
- int numZ, int numPhi, double tilt, double r0, double phi0, double zMin, double zMax) {
- super(name, " ", color);
-
- if (detectors == null) {
- detectors = new ArrayList();
- }
- detectors.add(this);
-
- this.layer = layer;
- this.length = length;
- this.width = width;
- this.thickness = thickness;
- this.numZ = numZ;
- this.numPhi = numPhi;
- this.tilt = Math.toRadians(tilt);
- this.r0 = r0;
- this.phi0 = Math.toRadians(phi0);
- this.zMin = zMin;
- this.zMax = zMax;
-
- this.deltaPhi = 2.*Math.PI / this.numPhi;
- this.deltaZ = (this.zMax - this.zMin) / this.numZ;
-
- // We do not take thickness/2 and width/2 to have some extra margin
- this.rMin = this.r0 - Math.abs(this.thickness*Math.cos(this.tilt))
- - Math.abs(this.width*Math.sin(this.tilt));
- this.rMax = this.r0 + Math.abs(this.thickness*Math.cos(this.tilt))
- + Math.abs(this.width*Math.sin(this.tilt));
- }
-
- /**
- * Empties the list of instances of this class.
- */
- public static void clear() {
- if (detectors != null) {
- detectors.clear();
- }
- }
-
- /**
- * This function draws the wafer/stave structure of the silicon detectors. It is called
- * from ADetectorSystem.draw().
- * @param window AWindow window to use
- * @param ag AGraphics graphics object to draw onto
- * @param projection AProjection2D current projection
- */
- public static void drawAdditionalItems(AWindow window, AGraphics ag, AProjection2D projection) {
- AParameter inDetDetail = parameterStore.getUnknown("Det", "SiliconDetail");
- if (inDetDetail != null && detectors != null && inDetDetail.getStatus()) {
- for (int i=0; i<detectors.size(); i++) {
- ACoord coord = ACoord.NO_DATA;
- ABarrelSiliconDetector detector = (ABarrelSiliconDetector) detectors.get(i);
- if (projection instanceof AProjectionYX) {
- coord = detector.getYXDetail();
- } else if (projection instanceof AProjectionRZ) {
- coord = detector.getRZDetail();
- } else if (projection instanceof AProjectionFZ) {
- coord = detector.getFZDetail();
- } else if (projection instanceof AProjectionFR) {
- coord = detector.getYXDetail().convertYXToFR().includePhiWrapAround("FR");
- }
-
- if (coord != ACoord.NO_DATA) {
- Color[] colorMap = AColorMap.getColors();
- ag.setColor(colorMap[parameterStore.get("Det", "SiliconDetail").getI()]);
-
- ACoord display = window.calculateDisplay(projection.nonLinearTransform(coord));
- for (int j=0; j<display.hv[0].length; j++) {
- ag.drawPolygon(display.hv[0][j], display.hv[1][j], display.hv[0][j].length);
- }
- }
- }
- }
- }
-
- /**
- * Determines if this element should be visible or not.
- * @return visibility
- */
- protected boolean isVisible() {
- int cut = parameterStore.get("CutsInDet", "SCT").getI();
-
- if (cut == AS3DData.CUT_INDET_SCT_ALL || cut == AS3DData.CUT_INDET_SCT_BARREL) {
- return true;
- } else {
- return false;
- }
- }
-
- /**
- * Returns the detector outline in the y-x projection.
- * @return ACoord polygon representing the detector
- */
- protected ACoord getYXUser() {
- if (!isVisible()) {
- return ACoord.NO_DATA;
- }
- if (parameterStore.get("YX", "Mode").getI() != AProjectionYX.MODE_STANDARD) {
- return ACoord.NO_DATA;
- }
-
- if (!globals.getUseOpenGL()) {
- int numPoints = 2 * (numPhi + 1);
- double[][] hv = new double[2][numPoints];
-
- for (int i = 0; i < numPhi + 1; i++) {
- hv[0][i] = rMin * Math.cos(phi0 + (i + 0.5) * deltaPhi);
- hv[1][i] = rMin * Math.sin(phi0 + (i + 0.5) * deltaPhi);
-
- hv[0][numPhi + 1 + i] = rMax * Math.cos(phi0 - (i + 0.5) * deltaPhi);
- hv[1][numPhi + 1 + i] = rMax * Math.sin(phi0 - (i + 0.5) * deltaPhi);
- }
- return new ACoord(hv);
- } else {
- return new ACoord(generateAnnulusTris(numPhi, phi0, rMin, rMax));
- }
- }
-
- /**
- * Returns the detector outline in the rho-z projection.
- * @return ACoord polygon representing the detector
- */
- protected ACoord getRZUser() {
- //if (!isVisible()) return ACoord.NO_DATA;
-
- double[][][] hv = new double[2][2][];
-
- hv[0][0] = new double[] { zMax, zMin, zMin, zMax};
- hv[1][0] = new double[] { rMax, rMax, rMin, rMin};
- hv[0][1] = new double[] { zMax, zMin, zMin, zMax};
- hv[1][1] = new double[] {-rMin, -rMin, -rMax, -rMax};
-
- return new ACoord(hv);
- }
-
- /**
- * Returns the detector outline in the phi-z projection.
- * @return ACoord polygon representing the detector
- */
- protected ACoord getFZUser() {
- if (!isVisible()) return ACoord.NO_DATA;
-
- double[][] hv = new double[2][];
-
- hv[0] = new double[] {zMax, zMin, zMin, zMax};
- hv[1] = new double[] {360., 360., 0., 0.};
-
- return new ACoord(hv);
- }
-
- /**
- * Returns the detector outline in the phi-rho projection.
- * @return ACoord polygon representing the detector
- */
- protected ACoord getFRUser() {
- if (!isVisible()) return ACoord.NO_DATA;
-
- double[][] hv = new double[2][];
-
- hv[0] = new double[] {rMin, rMax, rMax, rMin};
- hv[1] = new double[] {360., 360., 0., 0.};
-
- return new ACoord(hv);
- }
-
- /**
- * Returns the wafer/stave structure in the y-x projection.
- * @return ACoord polygons representing the wafers/staves
- */
- protected ACoord getYXDetail() {
- if (parameterStore.get("YX", "Mode").getI() != AProjectionYX.MODE_STANDARD) return ACoord.NO_DATA;
- if (!isVisible()) return ACoord.NO_DATA;
-
- double[][][] hv = new double[2][numPhi][];
- for (int i=0; i<numPhi; i++) {
- double phi = phi0 + i*deltaPhi;
-
- double x1 = r0*Math.cos(phi) + width/2.*Math.sin(phi+tilt) + thickness/2.*Math.cos(phi+tilt);
- double x2 = r0*Math.cos(phi) - width/2.*Math.sin(phi+tilt) + thickness/2.*Math.cos(phi+tilt);
- double x3 = r0*Math.cos(phi) - width/2.*Math.sin(phi+tilt) - thickness/2.*Math.cos(phi+tilt);
- double x4 = r0*Math.cos(phi) + width/2.*Math.sin(phi+tilt) - thickness/2.*Math.cos(phi+tilt);
-
- double y1 = r0*Math.sin(phi) - width/2.*Math.cos(phi+tilt) + thickness/2.*Math.sin(phi+tilt);
- double y2 = r0*Math.sin(phi) + width/2.*Math.cos(phi+tilt) + thickness/2.*Math.sin(phi+tilt);
- double y3 = r0*Math.sin(phi) + width/2.*Math.cos(phi+tilt) - thickness/2.*Math.sin(phi+tilt);
- double y4 = r0*Math.sin(phi) - width/2.*Math.cos(phi+tilt) - thickness/2.*Math.sin(phi+tilt);
-
- hv[0][i] = new double[] {x1, x2, x3, x4};
- hv[1][i] = new double[] {y1, y2, y3, y4};
- }
- return new ACoord(hv);
- }
-
- /**
- * Returns the wafer/stave structure in the rho-z projection.
- * @return ACoord polygons representing the wafers/staves
- */
- protected ACoord getRZDetail() {
- // if (!isVisible()) return ACoord.NO_DATA;
-
- double[][][] hv = new double[2][2*numZ][];
-
- for (int i=0; i<numZ; i++) {
- hv[0][i] = new double[] {zMin+(i+1)*deltaZ, zMin+i*deltaZ, zMin+i*deltaZ, zMin+(i+1)*deltaZ};
- hv[1][i] = new double[] {rMax, rMax, rMin, rMin};
-
- hv[0][numZ+i] = new double[] {zMin+(i+1)*deltaZ, zMin+i*deltaZ, zMin+i*deltaZ, zMin+(i+1)*deltaZ};
- hv[1][numZ+i] = new double[] {-rMin, -rMin, -rMax, -rMax};
- }
- return new ACoord(hv);
- }
-
- /**
- * Returns the wafer/stave structure in the phi-z projection.
- * @return ACoord polygons representing the wafers/staves
- */
- protected ACoord getFZDetail() {
- if (!isVisible()) return ACoord.NO_DATA;
-
- // Phi geometry is a mess, draw only the staves in this projection.
- double[][][] hv = new double[2][numZ+1][2];
- for (int i=0; i<=numZ; i++) {
- hv[0][i][0] = zMin + i*deltaZ;
- hv[1][i][0] = 360.;
- hv[0][i][1] = zMin + i*deltaZ;
- hv[1][i][1] = 0.;
- }
-
- return new ACoord(hv).includePhiWrapAround("FZ");
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/geometry/ABarrelTRTDetector.java b/graphics/AtlantisJava/src/atlantis/geometry/ABarrelTRTDetector.java
deleted file mode 100755
index 8ccd0a79528..00000000000
--- a/graphics/AtlantisJava/src/atlantis/geometry/ABarrelTRTDetector.java
+++ /dev/null
@@ -1,184 +0,0 @@
-package atlantis.geometry;
-
-import atlantis.canvas.AWindow;
-import atlantis.graphics.ACoord;
-import atlantis.graphics.AGraphics;
-import atlantis.graphics.colormap.AColorMap;
-import atlantis.parameters.AParameter;
-import atlantis.projection.AProjection2D;
-import atlantis.projection.AProjectionFR;
-import atlantis.projection.AProjectionYX;
-import java.awt.Color;
-import java.util.ArrayList;
-import java.util.List;
-
-/**
- * Class representing a TRT barrel detector part.
- * Also implements methods to draw more detailed structure of the detector.
- *
- * @author Eric Jansen
- */
-public class ABarrelTRTDetector extends ADetector {
-
- private static List detectors = null;
-
- protected int layer;
- protected int numPhi;
- protected double rMin;
- protected double rMax;
- protected double phiIn;
- protected double phiOut;
- protected double zMin;
- protected double zMax;
- protected double deltaPhi;
-
- public ABarrelTRTDetector(String name, String color, int layer, int numPhi, double rMin, double rMax,
- double phiIn, double phiOut, double zMin, double zMax) {
- super(name, " ", color);
-
- if (detectors == null) {
- detectors = new ArrayList();
- }
- detectors.add(this);
-
- this.layer = layer;
- this.numPhi = numPhi;
- this.rMin = rMin;
- this.rMax = rMax;
- this.phiIn = Math.toRadians(phiIn);
- this.phiOut = Math.toRadians(phiOut);
- this.zMin = zMin;
- this.zMax = zMax;
-
- this.deltaPhi = 2.*Math.PI / numPhi;
- }
-
- /**
- * Empties the list of instances of this class.
- */
- public static void clear() {
- if (detectors != null) {
- detectors.clear();
- }
- }
-
- /**
- * This function draws the module structure of the TRT detector. It is called
- * from ADetectorSystem.draw().
- * @param window AWindow window to use
- * @param ag AGraphics graphics object to draw onto
- * @param projection AProjection2D current projection
- */
- public static void drawAdditionalItems(AWindow window, AGraphics ag, AProjection2D projection) {
- AParameter inDetDetail = parameterStore.getUnknown("Det", "TRTDetail");
- if (inDetDetail != null && detectors != null && inDetDetail.getStatus()) {
- for (int i=0; i<detectors.size(); i++) {
- ACoord coord = ACoord.NO_DATA;
- ABarrelTRTDetector detector = (ABarrelTRTDetector) detectors.get(i);
- if (projection instanceof AProjectionYX) {
- coord = detector.getYXDetail();
- } else if (projection instanceof AProjectionFR) {
- coord = detector.getYXDetail().convertYXToFR().includePhiWrapAround("FR");
- }
-
- if (coord != ACoord.NO_DATA) {
- Color[] colorMap = AColorMap.getColors();
- ag.setColor(colorMap[parameterStore.get("Det", "TRTDetail").getI()]);
-
- ACoord display = window.calculateDisplay(projection.nonLinearTransform(coord));
- for (int j=0; j<display.hv[0].length; j++) {
- ag.drawPolygon(display.hv[0][j], display.hv[1][j], display.hv[0][j].length);
- }
- }
- }
- }
- }
-
- /**
- * Returns the detector outline in the y-x projection.
- * @return ACoord polygon representing the detector
- */
- protected ACoord getYXUser() {
- if (parameterStore.get("YX", "Mode").getI() != AProjectionYX.MODE_STANDARD) return ACoord.NO_DATA;
-
- if (!globals.getUseOpenGL()) {
- int numPoints = 2 * (numPhi + 1);
- double[][] hv = new double[2][numPoints];
-
- for (int i = 0; i < numPhi + 1; i++) {
- hv[0][i] = rMin * Math.cos(phiIn + i * deltaPhi);
- hv[1][i] = rMin * Math.sin(phiIn + i * deltaPhi);
-
- hv[0][numPhi + 1 + i] = rMax * Math.cos(phiOut - i * deltaPhi);
- hv[1][numPhi + 1 + i] = rMax * Math.sin(phiOut - i * deltaPhi);
- }
- return new ACoord(hv);
- } else {
- return new ACoord(generateAnnulusTris(numPhi, phiIn, rMin, rMax));
- }
- }
-
- /**
- * Returns the detector outline in the rho-z projection.
- * @return ACoord polygon representing the detector
- */
- protected ACoord getRZUser() {
- double[][][] hv = new double[2][2][];
-
- hv[0][0] = new double[] { zMax, zMin, zMin, zMax};
- hv[1][0] = new double[] { rMax, rMax, rMin, rMin};
- hv[0][1] = new double[] { zMax, zMin, zMin, zMax};
- hv[1][1] = new double[] {-rMin, -rMin, -rMax, -rMax};
-
- return new ACoord(hv);
- }
-
- /**
- * Returns the detector outline in the phi-z projection.
- * @return ACoord polygon representing the detector
- */
- protected ACoord getFZUser() {
- return ACoord.NO_DATA;
- }
-
- /**
- * Returns the detector outline in the phi-rho projection.
- * @return ACoord polygon representing the detector
- */
- protected ACoord getFRUser() {
- double[][] hv = new double[2][];
-
- hv[0] = new double[] {rMin, rMax, rMax, rMin};
- hv[1] = new double[] {360., 360., 0., 0.};
-
- return new ACoord(hv);
- }
-
- /**
- * Returns the module structure in the y-x projection.
- * @return ACoord polygons representing the modules
- */
- protected ACoord getYXDetail() {
- if (parameterStore.get("YX", "Mode").getI() != AProjectionYX.MODE_STANDARD) return ACoord.NO_DATA;
-
- double[][][] hv = new double[2][numPhi][];
- for (int i=0; i<numPhi; i++) {
- double phiMin = i*deltaPhi;
- double phiMax = (i+1)*deltaPhi;
-
- double x1 = rMax*Math.cos(phiMin+phiOut);
- double x2 = rMax*Math.cos(phiMax+phiOut);
- double x3 = rMin*Math.cos(phiMax+phiIn);
- double x4 = rMin*Math.cos(phiMin+phiIn);
-
- double y1 = rMax*Math.sin(phiMin+phiOut);
- double y2 = rMax*Math.sin(phiMax+phiOut);
- double y3 = rMin*Math.sin(phiMax+phiIn);
- double y4 = rMin*Math.sin(phiMin+phiIn);
-
- hv[0][i] = new double[] {x1, x2, x3, x4};
- hv[1][i] = new double[] {y1, y2, y3, y4};
- }
- return new ACoord(hv);
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/geometry/ABoxDetector.java b/graphics/AtlantisJava/src/atlantis/geometry/ABoxDetector.java
deleted file mode 100755
index 68fda4c768e..00000000000
--- a/graphics/AtlantisJava/src/atlantis/geometry/ABoxDetector.java
+++ /dev/null
@@ -1,172 +0,0 @@
-package atlantis.geometry;
-
-import atlantis.utils.AMath;
-import atlantis.parameters.*;
-import atlantis.graphics.ACoord;
-
-/**
- * in ATLAS boxes are RPC and MDT in the barrel
- */
-
-public class ABoxDetector extends ADetector {
-
- double zMin;
- double zMax;
- double rMin;
- double rMax;
- double phi;
- double excl;
- double size;
- String stationName;
- int stationEta;
- int stationPhi;
- int sector;
-
- public ABoxDetector(String name, double zMin, double zMax, double rMin,
- double rMax, double phi, double excl, double size, int stationEta, int stationPhi) {
- super(name, " ", name.substring(0, 3));
- this.zMin=zMin;
- this.zMax=zMax;
- this.rMin=rMin;
- this.rMax=rMax;
- this.phi=phi;
- this.excl=excl;
- this.size=size;
- this.stationName=name.substring(4, 7);
- this.stationEta=stationEta;
- this.stationPhi=stationPhi;
- this.sector=((int)((phi+Math.PI/16)/(Math.PI/8)))%16;
- }
-
- protected ACoord getFZUser() {
- double cosPhi=Math.cos(phi);
- double sinPhi=Math.sin(phi);
- double d=size/2.;
- double r=rMin;
- double x=r*cosPhi-excl*sinPhi;
- double y=r*sinPhi+excl*cosPhi;
- double dsinPhi=d*sinPhi;
- double dcosPhi=d*cosPhi;
- double phi1=Math.toDegrees(Math.atan2(y-dcosPhi, x+dsinPhi));
- double phi2=Math.toDegrees(Math.atan2(y+dcosPhi, x-dsinPhi));
-
- if(phi1<0.) phi1+=360.;
- if(phi2<0.) phi2+=360.;
- if(phi1-phi2>180.) phi1-=360.;
- if(phi2-phi1>180.) phi2-=360.;
-
- return new ACoord(AMath.xBox((zMin+zMax)/2.,(zMax-zMin)/2.),
- AMath.yBox((phi1+phi2)/2.,(phi1-phi2)/2.));
- }
-
- protected ACoord getRZUser() {
- double phiMid=Math.toRadians(parameterStore.get("RZ", "Phi").getD());
- double phiDiff=Math.abs(phi-phiMid);
- double sign=-1.;
- if(phiDiff<Math.PI/2.||phiDiff>3*Math.PI/2.)
- sign=+1.;
- return getXZRZUser(sign);
- }
-
- protected ACoord getXZUser() {
- AParameter p=parameterStore.get("XZ", "Phi");
-
- // display muon data when phi is in the middle of a sector
- if(p.getD() % 22.5 < 1e-2) {
- int sect=(int)Math.round((p.getD() % 360.) / 22.5);
- if(sector==sect) {
- return getXZRZUser(1.);
- } else if(sector==sect-8||sector==sect+8) {
- return getXZRZUser(-1.);
- }
- }
- return ACoord.NO_DATA;
- }
-
- protected ACoord getXZRZUser(double sign) {
- return new ACoord(
- AMath.xBox( (zMin + zMax) / 2., (zMax - zMin) / 2.),
- AMath.yBox( sign*(rMin + rMax) / 2., sign*(rMax - rMin) / 2.));
- }
-
-
- protected ACoord getYXUser() {
- return getYXUser(0);
- }
-
- protected ACoord getFRUser() {
- return convertYXToFR(getYXUser(1));
- }
-
- private ACoord getYXUser(int flag) {
- int[] split= {12, 1, 12, 1};
- int numPoints=4;
- boolean splitIt=parameterStore.get("YX", "FishEye").getStatus()||parameterStore.get("YX", "Clock").getStatus()
- ||flag==1;
-
- if(splitIt)
- numPoints=26;
- double[] temp=new double[4];
- double[][] hv=new double[2][numPoints];
- double cosPhi=Math.cos(phi);
- double sinPhi=Math.sin(phi);
- double d=size/2.;
- double r=rMin;
- double x=r*cosPhi-excl*sinPhi;
- double y=r*sinPhi+excl*cosPhi;
- double dx=d*sinPhi;
- double dy=d*cosPhi;
-
- hv[0][0]=x+dx;
- hv[1][0]=y-dy;
- hv[0][1]=x-dx;
- hv[1][1]=y+dy;
- r=rMax;
- x=r*cosPhi-excl*sinPhi;
- y=r*sinPhi+excl*cosPhi;
-
- hv[0][3]=x+dx;
- hv[1][3]=y-dy;
- hv[0][2]=x-dx;
- hv[1][2]=y+dy;
- if(splitIt)
- for(int j=0; j<2; ++j) {
- for(int k=0; k<4; ++k)
- temp[k]=hv[j][k];
- AMath.splitArrayIntoPieces(temp, hv[j], split);
- }
- return new ACoord(hv);
- }
-
- protected boolean equalsYX(ADetector o) {
- if (o instanceof ABoxDetector) {
- ABoxDetector that = (ABoxDetector) o;
- return this.rMin == that.rMin &&
- this.rMax == that.rMax &&
- this.phi == that.phi &&
- this.size == that.size &&
- this.excl == that.excl;
- } else
- return false;
- }
-
- protected boolean equalsRZ(ADetector o) {
- if (o instanceof ABoxDetector) {
- ABoxDetector that = (ABoxDetector) o;
- return this.rMin == that.rMin &&
- this.rMax == that.rMax &&
- this.zMin == that.zMin &&
- this.zMax == that.zMax;
- } else
- return false;
- }
-
- public double getZMin() { return zMin; }
- public double getZMax() { return zMax; }
- public double getRMin() { return rMin; }
- public double getRMax() { return rMax; }
- public double getPhi() { return phi; }
- public double getSize() { return size; }
-
-}
-
diff --git a/graphics/AtlantisJava/src/atlantis/geometry/ABoxDetectors.java b/graphics/AtlantisJava/src/atlantis/geometry/ABoxDetectors.java
deleted file mode 100755
index a4b10b15070..00000000000
--- a/graphics/AtlantisJava/src/atlantis/geometry/ABoxDetectors.java
+++ /dev/null
@@ -1,168 +0,0 @@
-package atlantis.geometry;
-
-import atlantis.parameters.AParameter;
-import atlantis.parameters.APar;
-import atlantis.utils.AMath;
-import java.util.*;
-
-
-/**
- * ABoxDetector's contains all instances of ABoxDetector.
- * In different projections not all Boxes need to be drawn
- * as they may exactly overlap. Filling of these areas is
- * slow, so only the Boxes needed are drawn in each projection.
- * (That is why boxes are group into ABoxDetectors)
- * This is achieved by making a drawlist before drawing.
- */
-public final class ABoxDetectors extends ADetectors {
-
- private int numRZTypes;
- private int[] typeRZ;
- private int numYXTypes;
- private int[] typeYX;
-
- private ABoxDetector[] box;
-
- public ABoxDetectors(List detectors) {
- super(filterBoxDetectors(detectors));
- box= new ABoxDetector[det.length];
- for(int i=0;i<box.length;++i)
- box[i]=(ABoxDetector)det[i];
-
- typeYX=new int[numData];
- for(int i=0; i<numData; ++i)
- typeYX[i]=-1;
-
- numYXTypes=0;
- for(int i=0; i<numData; ++i)
- if(typeYX[i]==-1) {
- typeYX[i]=numYXTypes;
- for(int j=i+1; j<numData; ++j)
- if(typeYX[j]==-1&&det[i].equalsYX(det[j]))
- typeYX[j]=numYXTypes;
- numYXTypes++;
- }
-
- typeRZ=new int[numData];
- for(int i=0; i<numData; ++i)
- typeRZ[i]=-1;
-
- numRZTypes=0;
- for(int i=0; i<numData; ++i)
- if(typeRZ[i]==-1) {
- typeRZ[i]=numRZTypes;
- for(int j=i+1; j<numData; ++j)
- if(typeRZ[j]==-1&&det[i].equalsRZ(det[j]))
- typeRZ[j]=numRZTypes;
- numRZTypes++;
- }
- }
-
- private static ADetector[] filterBoxDetectors(List detectors) {
-
- List tempDetectors=new ArrayList(detectors.size());
- Iterator it=detectors.iterator();
-
- while(it.hasNext()) {
- Object o=it.next();
- if(o instanceof ABoxDetector || o instanceof ATBxDetector) tempDetectors.add(o);
- }
- return (ADetector[])tempDetectors.toArray(new ADetector[tempDetectors.size()]);
- }
-
- private void makeDrawListYX() {
- int mode=parameterStore.get("YX", "Mode").getI();
-
- if(mode==0) {
- numDraw=numYXTypes;
- for(int i=0; i<numData; ++i)
- listdl[typeYX[i]]=i;
- } else
- numDraw=0;
- }
-
- private void makeDrawListXZ() {
- AParameter p=parameterStore.get("XZ", "Phi");
-
- // display muon data when phi is in the middle of a sector
- if(p.getD() % 22.5 < 1e-2) {
- int sect=(int)Math.round((p.getD() % 360.) / 22.5);
- int num=0;
- for(int i=0; i<numData; i++) {
- int s=box[i].sector;
- if(s==sect||s==sect-8||s==sect+8) {
- listdl[num++]=i;
- }
- }
- numDraw=num;
- } else {
- numDraw=0;
- }
- }
-
- private void makeDrawListRZ() {
- // first make the draw list
- // for each type find out if it has both +ve and negative sign
- int[] pos=new int[typeRZ.length];
- int[] neg=new int[typeRZ.length];
- double phiMid=Math.toRadians(parameterStore.get("RZ", "Phi").getD());
-
- for(int i=0; i<numRZTypes; ++i)
- neg[i]=pos[i]=-1;
-
- for(int i=0; i<numData; ++i) {
- double phiDiff=Math.abs(box[i].phi-phiMid);
-
- if(phiDiff<Math.PI/2.||phiDiff>3*Math.PI/2.)
- pos[typeRZ[i]]=i;
- else
- neg[typeRZ[i]]=i;
- }
-
- int num=0;
- for(int i=0; i<numRZTypes; ++i) {
- if(pos[i]!=-1)
- listdl[num++]=pos[i];
- if(neg[i]!=-1)
- listdl[num++]=neg[i];
- }
- numDraw=num;
- }
-
- private void makeDrawListFZ() {
- int mode=parameterStore.get("FZ", "Mode").getI();
-
- if(mode==0)
- numDraw=0;
- else {
- int num=0;
-
- for(int i=0; i<numData; ++i) {
- char type=det[i].getName().charAt(0);
- char station=det[i].getName().charAt(5);
- char io=det[i].getName().charAt(det[i].getName().length()-1);
-
- if((mode==1&&station=='M'&&io=='I'&&type=='R')||(mode==2&&station=='M'&&io=='O'&&type=='R')
- ||(mode==3&&station=='O'&&type=='R')||(mode==4&&(station=='I'||station=='E')&&type=='M')
- ||(mode==5&&station=='M'&&type=='M')||(mode==6&&station=='O'&&type=='M'))
- listdl[num++]=i;
- numDraw=num;
- }
- }
- }
-
- protected void makeDrawList(String projection) {
- if (projection.equals("YX") || projection.equals("FR") )
- makeDrawListYX();
- else if (projection.equals("FZ"))
- makeDrawListFZ();
- else if (projection.equals("RZ"))
- makeDrawListRZ();
- else if (projection.equals("XZ"))
- makeDrawListXZ();
- else
- numDraw=0;
- }
-
-}
-
diff --git a/graphics/AtlantisJava/src/atlantis/geometry/ACalorimeterDetector.java b/graphics/AtlantisJava/src/atlantis/geometry/ACalorimeterDetector.java
deleted file mode 100755
index da80146936d..00000000000
--- a/graphics/AtlantisJava/src/atlantis/geometry/ACalorimeterDetector.java
+++ /dev/null
@@ -1,699 +0,0 @@
-package atlantis.geometry;
-
-import atlantis.canvas.AWindow;
-import atlantis.graphics.ACoord;
-import atlantis.graphics.AClipper;
-import atlantis.graphics.AGraphics;
-import atlantis.graphics.colormap.AColorMap;
-import atlantis.utils.AAtlantisException;
-import atlantis.utils.AIdHelper;
-import atlantis.utils.AMath;
-import atlantis.parameters.APar;
-import atlantis.parameters.AParameter;
-import atlantis.projection.AProjection;
-import atlantis.projection.AProjection2D;
-import atlantis.projection.AProjectionFR;
-import atlantis.projection.AProjectionFZ;
-import atlantis.projection.AProjectionRZ;
-import atlantis.projection.AProjectionVP;
-import atlantis.projection.AProjectionYX;
-import java.awt.Color;
-import java.util.List;
-import java.util.ArrayList;
-
-/**
- * Abstract class representing a region of a certain sampling of a ATLAS
- * calorimeter. Based on the parameters given to the constructor, the
- * derived classes should be able to calculate the geometrical properties
- * of the cells they contain. This behavior is required for drawing the data.
- *
- * @author Eric Jansen
- */
-abstract public class ACalorimeterDetector extends ADetector {
-
- // Keep a static list of instances for easy access
- protected static List detectors = null;
-
- // These arrays are used for fast cell to detector mapping.
- protected static int[][][] lar = null;
- protected static int[][] hec = null;
- protected static int[] tile = null;
- protected static int[] tile_ext = null;
- protected static int[][] tile_gap = null;
- protected static int[] mbts = null;
-
- protected int sampling;
- protected int region;
- protected double rMin;
- protected double rMax;
- protected double zMin;
- protected double zMax;
- protected double phi0;
- protected int numPhi;
- protected double deltaPhi;
- protected double eta0;
- protected double deltaEta;
- protected int numEta;
- protected int minEta;
-
- protected double detEtaMin;
- protected double detEtaMax;
- protected AClipper clipper;
-
- /**
- * Constructs a new calorimeter object.
- * @param name String name of the object
- * @param color String name of the color used to draw this object
- */
- public ACalorimeterDetector(String name, String color) {
- super(name, " ", color);
-
- if (detectors == null) {
- detectors = new ArrayList(40);
-
- // These numbers correspond to the maximum number of values that can
- // be encoded in the identifier.
- lar = new int[4][4][8];
- hec = new int[4][2];
- tile = new int[16];
- tile_ext = new int[16];
- tile_gap = new int[16][64];
- mbts = new int[2];
-
- // Initialize them to -1, which means no detector element known.
- for (int i=0; i<lar.length; i++)
- for (int j=0; j<lar[i].length; j++)
- for (int k=0; k<lar[i][j].length; k++)
- lar[i][j][k] = -1;
-
- for (int i=0; i<hec.length; i++)
- for (int j=0; j<hec[i].length; j++)
- hec[i][j] = -1;
-
- for (int i=0; i<tile.length; i++)
- tile[i] = -1;
-
- for (int i=0; i<tile_ext.length; i++)
- tile_ext[i] = -1;
-
- for (int i=0; i<tile_gap.length; i++)
- for (int j=0; j<tile_gap[i].length; j++)
- tile_gap[i][j] = -1;
-
- for (int i=0; i<mbts.length; i++)
- mbts[i] = -1;
- }
-
- detectors.add(this);
- }
-
- /**
- * Returns one of the instances of this class.
- * @param index int index of instance
- * @return ACalorimeterDetector instance at the requested index
- */
- public static ACalorimeterDetector get(int index) {
- return (ACalorimeterDetector) detectors.get(index);
- }
-
- /**
- * Shows the number of instances of this class that have been created.
- * @return int number of instances
- */
- public static int count() {
- if (detectors != null) {
- return detectors.size();
- } else {
- return 0;
- }
- }
-
- /**
- * This functions maps the calorimeter cells to a geometry object. In principle we could
- * compare every cell to every geometry object, but that would be too slow. Therefore we
- * organize the geometry in an array structure.
- * @param id int identifier of a cell
- * @return int index of the geometry object in the detector array
- */
- public static int getDetectorIndex(int id) {
- if (detectors == null) return -1;
-
- try {
- switch (AIdHelper.subDetector(id)) {
- case 4:
- switch (AIdHelper.larPart(id)) {
- case 1:
- // LAr EM
- return lar[Math.abs(AIdHelper.larBarrelEndcap(id))]
- [AIdHelper.larSampling(id)][AIdHelper.larRegion(id)];
- case 2:
- // HEC
- return hec[AIdHelper.larSampling(id)][AIdHelper.larRegion(id)];
- case 3:
- // FCAL
- return -1;
- default:
- return -1;
- }
- case 5:
- switch (AIdHelper.tileSection(id)) {
- case 1:
- // TILE barrel
- return tile[AIdHelper.tileSampling(id)];
- case 2:
- // TILE extended barrel
- return tile_ext[AIdHelper.tileSampling(id)];
- case 3:
- // ITC gap/crack
- return tile_gap[AIdHelper.tileSampling(id)][AIdHelper.tileTower(id)];
- case 4:
- // MBTS
- return -1;
- default:
- return -1;
- }
- default:
- return -1;
- }
- } catch (AAtlantisException e) {
- return -1;
- }
- }
-
- /**
- * Clear the list of instances. This is called before reading another geometry file.
- */
- public static void clear() {
- if (detectors != null) {
- detectors.clear();
- }
- detectors = null;
- lar = null;
- hec = null;
- tile = null;
- tile_ext = null;
- tile_gap = null;
- mbts = null;
- }
-
- /**
- * Get the outline of a certain cell in a certain projection.
- * @param projection AProjection projection
- * @param eta int eta index of the cell
- * @param phi int phi index of the cell
- * @param side int side sign of the z coordinate of the cell
- * @return ACoord cell outline
- */
- public ACoord getCell(AProjection projection, int eta, int phi, int side) {
- if (projection instanceof AProjectionYX) {
- return getYXCell(eta, phi);
- } else if (projection instanceof AProjectionRZ) {
- return getRZCell(eta, phi, side);
- } else if (projection instanceof AProjectionFR) {
- return getFRCell(eta, phi);
- } else if (projection instanceof AProjectionFZ) {
- return getFZCell(eta, phi, side);
- } else if (projection instanceof AProjectionVP) {
- return getVPCell(eta, phi, side);
- } else {
- return ACoord.NO_DATA;
- }
- }
-
- /**
- * Returns the y-x geometry of a specific cell in this calorimeter part.
- * @param eta int eta index of cell
- * @param phi int phi index of cell
- * @return ACoord polygon representing cell geometry
- */
- public ACoord getYXCell(int eta, int phi) {
- return ACoord.NO_DATA;
- }
-
- /**
- * Returns the rho-z geometry of a specific cell in this calorimeter part.
- * @param eta int eta index of cell
- * @param phi int phi index of cell
- * @param side int sign of the z coordinate of cell
- * @return ACoord polygon representing cell geometry
- */
- public ACoord getRZCell(int eta, int phi, int side) {
- return ACoord.NO_DATA;
- }
-
- /**
- * Returns the phi-rho geometry of a specific cell in this calorimeter part.
- * @param eta int eta index of cell
- * @param phi int phi index of cell
- * @return ACoord polygon representing cell geometry
- */
- public ACoord getFRCell(int eta, int phi) {
- return convertYXToFR(getYXCell(eta, phi));
- }
-
- /**
- * Returns the phi-z geometry of a specific cell in this calorimeter part.
- * @param eta int eta index of cell
- * @param phi int phi index of cell
- * @param side int sign of the z coordinate of cell
- * @return ACoord
- */
- public ACoord getFZCell(int eta, int phi, int side) {
- return ACoord.NO_DATA;
- }
-
- /**
- * Returns the eta-phi geometry of a specific cell in this calorimeter part.
- * @param eta int eta index of cell
- * @param phi int phi index of cell
- * @param side int sign of the z coordinate of cell
- * @return ACoord polygon representing cell geometry
- */
- public ACoord getVPCell(int eta, int phi, int side) {
- return ACoord.NO_DATA;
- }
-
- /**
- * Returns the eta value of the center (in eta) of a cell.
- * @param eta int eta index of the cell
- * @param side int sign of the z coordinate of the cell
- * @return double eta value
- */
- public double getEta(int eta, int side) {
- if (side < 0) {
- return -getEta(eta, -side);
- } else {
- return eta0 + (eta - minEta + 0.5) * deltaEta;
- }
- }
-
- /**
- * Returns the lowest eta value of a cell.
- * @param eta int eta index of the cell
- * @param side int sign of the z coordinate of the cell
- * @return double lowest eta value
- */
- public double getEtaMin(int eta, int side) {
- if (side < 0) {
- return -getEtaMax(eta, -side);
- } else {
- return eta0 + (eta - minEta) * deltaEta;
- }
- }
-
- /**
- * Returns the highest eta value of a cell.
- * @param eta int eta index of the cell
- * @param side int sign of the z coordinate of the cell
- * @return double highest eta value
- */
- public double getEtaMax(int eta, int side) {
- if (side < 0) {
- return -getEtaMin(eta, -side);
- } else {
- return eta0 + (eta - minEta + 1) * deltaEta;
- }
- }
-
- /**
- * Returns the phi value of the center of a cell.
- * @param phi int phi index of the cell
- * @return double phi value
- */
- public double getPhi(int phi) {
- return phi0 + (phi + 0.5) * deltaPhi;
- }
-
- /**
- * Returns the lowest phi value of a cell.
- * @param phi int phi index of the cell
- * @return double lowest phi value
- */
- public double getPhiMin(int phi) {
- return phi0 + phi * deltaPhi;
- }
-
- /**
- * Returns the highest phi value of a cell.
- * @param phi int phi index of the cell
- * @return double highest phi value
- */
- public double getPhiMax(int phi) {
- return phi0 + (phi + 1) * deltaPhi;
- }
-
- /**
- * Determines on which side a certain cell should be drawn in the RZ projection,
- * based on the phi angle the user has set in the menu.
- * @param phi int phi index of the cell
- * @return int 1 or -1, meaning top or bottom repectively
- */
- public int getRSign(int phi) {
- double cellPhi = phi0 + phi*deltaPhi + deltaPhi/2.;
- double phiMid = Math.toRadians(parameterStore.get("RZ", "Phi").getD());
- double phiDiff = Math.abs(cellPhi-phiMid);
- if (phiDiff <= Math.PI/2.|| phiDiff > 3*Math.PI/2.) {
- return 1;
- } else {
- return -1;
- }
- }
-
- /**
- * Returns the number of cells in phi for this calorimeter part.
- * @return int number of cells in phi
- */
- public int getNumPhi() {
- return numPhi;
- }
-
- /**
- * Returns the size of a cell in phi for this calorimeter part (this is the same for all cells).
- * @return double size of a cell in radians
- */
- public double getDeltaPhi() {
- return deltaPhi;
- }
-
- /**
- * Returns the number of cells in eta for this calorimeter part.
- * @return double number of cells in eta
- */
- public int getNumEta() {
- return numEta;
- }
-
- /**
- * Returns the size of a cell in eta for this calorimeter part (this is the same for all cells).
- * @return double size of a cell in eta
- */
- public double getDeltaEta() {
- return deltaEta;
- }
-
- /**
- * Returns the center radius of the calorimeter part.
- * @return double center radius
- */
- public double getR() {
- return (rMin+rMax)/2.;
- }
-
- /**
- * Returns the inner radius of the calorimter part.
- * @return double inner radius
- */
- public double getRMin() {
- return rMin;
- }
-
- /**
- * Returns the outer radius of the calorimeter part.
- * @return double outer radius
- */
- public double getRMax() {
- return rMax;
- }
-
- /**
- * Returns the center z of the calorimeter part.
- * @return double center z
- */
- public double getZ() {
- return (zMin+zMax)/2.f;
- }
-
- /**
- * Returns the inner z of the calorimeter part.
- * @return double inner z
- */
- public double getZMin() {
- return zMin;
- }
-
- /**
- * Returns the outer z of the calorimter part.
- * @return double outer z
- */
- public double getZMax() {
- return zMax;
- }
-
- /**
- * Returns the inner eta of the calorimeter part.
- * @return double inner eta
- */
- public double getEtaMin() {
- return eta0;
- }
-
- /**
- * Returns the outer eta of the calorimeter part.
- * @return double outer eta
- */
- public double getEtaMax() {
- return eta0 + numEta*deltaEta;
- }
-
- /**
- * Returns the sampling of the calorimeter part. This corresponds to the layers of the calorimeter.
- * @return int sampling
- */
- public int getSampling() {
- return sampling;
- }
-
- /**
- * Returns the region of this calorimeter part. Within a layer a new region is started when the
- * size of the cells changes.
- * @return int region
- */
- public int getRegion() {
- return region;
- }
-
- /**
- * Returns the eta index of the first cell in eta for this calorimeter part.
- * @return int eta
- */
- public int getFirstEta() {
- return minEta;
- }
-
- /**
- * Returns the eta index of the last cell in eta for this calorimeter part.
- * @return int eta
- */
- public int getLastEta() {
- if (sampling == 2 && name.indexOf("TILE") >= 0)
- return minEta + 2*numEta;
- else
- return minEta + numEta-1;
- }
-
- /**
- * Returns the phi index of the first cell in phi for this calorimeter part.
- * @return int phi
- */
- public int getFirstPhi() {
- // This is always 0, still we provide this method for consistency.
- return 0;
- }
-
- /**
- * Returns the phi index of the last cell in phi for this calorimeter part.
- * @return int phi
- */
- public int getLastPhi() {
- return numPhi-1;
- }
-
- /**
- * This function draws the module structure of the calorimeter. It is called
- * from ADetectorSystem.draw().
- * @param window AWindow window to use
- * @param ag AGraphics graphics object to draw onto
- * @param projection AProjection2D current projection
- */
- public static void drawAdditionalItems(AWindow window, AGraphics ag, AProjection2D projection) {
- AParameter caloDetail = parameterStore.getUnknown("Det", "CaloDetail");
- if (caloDetail != null && detectors != null && caloDetail.getStatus())
- {
- for (int i=0; i<detectors.size(); i++)
- {
- ACalorimeterDetector detector = (ACalorimeterDetector) detectors.get(i);
-
- // Only draw region 0 in YX, not the few different cells at the ends
- if ((projection instanceof AProjectionYX && detector.getRegion() == 0) || projection instanceof AProjectionFR)
- {
- int start;
- int mode = parameterStore.get("YX", "Mode").getI();
- if(mode==AProjectionYX.MODE_STANDARD)
- //only needs one eta for standard view
- start = detector.getFirstEta();
- else if(mode>=AProjectionYX.MODE_LAR_ENDCAP_PRESAMPLER && mode <=AProjectionYX.MODE_HEC_4)
- //need to loop over eta for endcaps
- start = detector.getLastEta();
- else
- start=0;
- if(mode==AProjectionYX.MODE_STANDARD || (mode>=AProjectionYX.MODE_LAR_ENDCAP_PRESAMPLER && mode <=AProjectionYX.MODE_HEC_4) || mode==AProjectionYX.MODE_MBTS)
- {
- for (int eta=start; eta>=detector.getFirstEta(); eta--)
- {
- for (int phi=detector.getFirstPhi(); phi<=detector.getLastPhi(); phi++)
- {
- ACoord coord = detector.getCell(projection, eta, phi, 1);
- if (coord != ACoord.NO_DATA) {
- ACoord display;
- if (projection instanceof AProjectionYX)
- display = window.calculateDisplay(projection.nonLinearTransform(coord));
- else
- display = window.calculateDisplay(projection.nonLinearTransform(
- coord.includePhiWrapAround("FR"))
- );
-
- Color[] colorMap = AColorMap.getColors();
- ag.setColor(colorMap[parameterStore.get("Det", "CaloDetail").getI()]);
-
- for (int j=0; j<display.hv[0].length; j++)
- ag.drawPolygon(display.hv[0][j], display.hv[1][j], display.hv[0][j].length);
- }
- }
- }
- }
- else if((mode==AProjectionYX.MODE_LAR_ENDCAP_SUMMED && (detector.getName().equals("LAr Endcap Presampler")||detector.getName().equals("LAr_EC_Presampler")))
- || (mode==AProjectionYX.MODE_HEC_SUMMED && detector.getName().equals("HEC") && detector.getSampling()==0))
- {
- //For summed endcaps only need to do this once
- //The cells match the bining used but are not specific to the detector
- //hence they do not all lie inside the detector
- double etaBin=0.1,phiBin=(2*Math.PI/64);
- int binvalue;
- if(mode==AProjectionYX.MODE_HEC_SUMMED)
- {
- binvalue = parameterStore.get("YX", "HECBin").getI();
- }
- else
- {
- binvalue = parameterStore.get("YX", "LArBin").getI();
- }
- if(binvalue==3)
- {
- etaBin=0.1;
- phiBin=(2*Math.PI/64);
- }
- else
- {
- etaBin*=binvalue;
- phiBin*=binvalue;
- }
- Color[] colorMap = AColorMap.getColors();
- ag.setColor(colorMap[parameterStore.get("Det", "CaloDetail").getI()]);
- double firstZMin=detector.getZMin();
- //check etaSplit is set correct
- if(binvalue==3)
- {
- setEtaSplit();
- }
- //loop between values greater and less than the actual size
- for(double Eta=1.2; Eta<3.3; Eta+=etaBin)
- {
- if(binvalue==3 && Eta>=parameterStore.get("YX", "SplitEta").getD())
- {
- etaBin=0.2;
- phiBin=(2*Math.PI/32);
- }
- double RMax=firstZMin/Math.sinh(Eta);
- double RMin=firstZMin/Math.sinh(Eta+etaBin);
- for(double Phi=0.0; Phi<(2*Math.PI); Phi+=phiBin)
- {
- double[][] hv = new double[2][];
- hv[0] = new double[] {RMax*Math.cos(Phi), RMax*Math.cos(Phi+phiBin),
- RMin*Math.cos(Phi+phiBin), RMin*Math.cos(Phi)};
- hv[1] = new double[] {RMax*Math.sin(Phi), RMax*Math.sin(Phi+phiBin),
- RMin*Math.sin(Phi+phiBin), RMin*Math.sin(Phi)};
-
- ACoord coord = new ACoord(hv);
- ACoord display;
-
- if (projection instanceof AProjectionYX)
- display = window.calculateDisplay(projection.nonLinearTransform(coord));
- else
- display = window.calculateDisplay(projection.nonLinearTransform(
- coord.convertYXToFR().includePhiWrapAround("FR"))
- );
- for(int j=0; j<display.hv[0].length; j++)
- ag.drawPolygon(display.hv[0][j], display.hv[1][j], display.hv[0][j].length);
- }
- }
- }
-
- }
- else if (projection instanceof AProjectionRZ)
- {
- for (int eta=detector.getFirstEta(); eta<=detector.getLastEta(); eta++)
- {
-
- for (int phi=detector.getFirstPhi();
- phi<=detector.getFirstPhi()+detector.getNumPhi()/2;
- phi+=detector.getNumPhi()/2)
- {
-
- for (int side=-1; side<=1; side+=2) {
- ACoord coord = detector.getCell(projection, eta, phi, side);
-
- if (coord != ACoord.NO_DATA)
- {
- ACoord display = window.calculateDisplay(projection.nonLinearTransform(coord));
- Color[] colorMap = AColorMap.getColors();
- ag.setColor(colorMap[parameterStore.get("Det", "CaloDetail").getI()]);
- ag.drawPolygon(display.hv[0][0], display.hv[1][0], display.hv[0][0].length);
- }
- }
- }
- }
- }
- else if (projection instanceof AProjectionFZ)
- {
- int eta = detector.getFirstEta();
-
- for (int phi=detector.getFirstPhi(); phi<=detector.getLastPhi(); phi++)
- {
- for (int side=-1; side<=1; side+=2)
- {
- ACoord coord = detector.getCell(projection, eta, phi, side).includePhiWrapAround("FZ");
-
- if (coord != ACoord.NO_DATA)
- {
- ACoord display = window.calculateDisplay(projection.nonLinearTransform(coord));
- Color[] colorMap = AColorMap.getColors();
- ag.setColor(colorMap[parameterStore.get("Det", "CaloDetail").getI()]);
-
- for (int j=0; j<display.hv[0].length; j++)
- {
- ag.drawPolygon(display.hv[0][j], display.hv[1][j], display.hv[0][j].length);
- }
- }
- }
- }
- }
- }
- }
- }
-
- /**
- * This function sets the value of EtaSplit to a minimum of 1.2 and
- * to an accuracy of 1 decimal place
- * 1.2 is minimum as is minimum of where cells outline is drawn
- */
- public static void setEtaSplit() {
- if(parameterStore.get("YX", "SplitEta").getD()<1.2)
- parameterStore.get("YX", "SplitEta").setD(1.2);
- else
- {
- int temp=(int) Math.floor(parameterStore.get("YX", "SplitEta").getD()*10.0);
- parameterStore.get("YX", "SplitEta").setD(temp/10.0);
- }
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/geometry/ADetector.java b/graphics/AtlantisJava/src/atlantis/geometry/ADetector.java
deleted file mode 100755
index b7196bfe34a..00000000000
--- a/graphics/AtlantisJava/src/atlantis/geometry/ADetector.java
+++ /dev/null
@@ -1,157 +0,0 @@
-package atlantis.geometry;
-
-import atlantis.parameters.AParameter;
-import atlantis.parameters.APar;
-import atlantis.globals.AGlobals;
-import atlantis.graphics.ACoord;
-
-/**
- * Base class of all individual detectors
- */
-
-public abstract class ADetector {
-
- String name;
- String projection;
- String color;
- AParameter fillColorParameter;
-
- protected static APar parameterStore = APar.instance();
- protected static AGlobals globals = AGlobals.instance();
-
- final static protected double[][] NO_DETECTORS=new double[2][0];
-
- ADetector(String name, String projection, String color) {
- this.name=name;
- this.projection=projection;
- this.color=color;
- fillColorParameter=APar.instance().get("Det", color+"Fill");
- }
-
- protected ACoord getYXUser() {
- return ACoord.NO_DATA;
- }
-
- protected ACoord getRZUser() {
- return ACoord.NO_DATA;
- }
-
- protected ACoord getYZUser() {
- return ACoord.NO_DATA;
- }
-
- protected ACoord getXZUser() {
- return ACoord.NO_DATA;
- }
-
- protected ACoord getFRUser() {
- return ACoord.NO_DATA;
- }
-
- protected ACoord getFZUser() {
- return ACoord.NO_DATA;
- }
-
- protected ACoord getVPUser() {
- return ACoord.NO_DATA;
- }
-
- protected ACoord getUser(String projection) {
- if (projection.equals("YX"))
- return getYXUser();
- else if (projection.equals("RZ"))
- return getRZUser();
- else if (projection.equals("XZ"))
- return getXZUser();
- else if (projection.equals("YZ"))
- return getYZUser();
- else if (projection.equals("FZ"))
- return getFZUser();
- else if (projection.equals("FR"))
- return getFRUser();
- else if (projection.equals("VP"))
- return getVPUser();
- else
- return ACoord.NO_DATA;
- }
-
- public String getName() {
- return name;
- }
-
- public int getFillColor() {
- return fillColorParameter.getI();
- }
-
- protected boolean getDraw() {
- return fillColorParameter.getStatus();
- }
-
- protected boolean equalsYX(ADetector that) {
- return false;
- }
-
- protected boolean equalsRZ(ADetector that) {
- return false;
- }
-
- protected ACoord convertYXToFR(ACoord coord) {
- double phiLast=0.;
-
- for (int i=0; i<coord.hv[0].length; i++) {
- for (int j=0; j<coord.hv[0][i].length; j++) {
- double xx=coord.hv[0][i][j];
- double yy=coord.hv[1][i][j];
- double rho=Math.sqrt(xx*xx+yy*yy);
- double phi=Math.toDegrees(Math.atan2(yy, xx));
-
- if(phi<0.)
- phi+=360.;
- if(j>0) {
- if(phi-phiLast>180.) phi-=360.;
- if(phi-phiLast<-180.) phi+=360.;
- }
- coord.hv[0][i][j]=rho;
- coord.hv[1][i][j]=phi;
- phiLast=phi;
- }
- }
-
- return coord;
- }
-
- protected double[][][] generateAnnulusTris(int numPhi, double phi0,
- double rMin, double rMax) {
-
- //rMin *= 1.02;
-
- int numTris = 2 * (numPhi);
- double[][][] hv = new double[2][numTris][3];
-
- double deltaPhi = 2. * Math.PI / numPhi;
-
- for (int i = 0; i < numPhi; i++) {
- hv[0][i][0] = rMax * Math.cos(phi0 + i * deltaPhi);
- hv[1][i][0] = rMax * Math.sin(phi0 + i * deltaPhi);
-
- hv[0][i][1] = rMax * Math.cos(phi0 + (i + 1) * deltaPhi);
- hv[1][i][1] = rMax * Math.sin(phi0 + (i + 1) * deltaPhi);
-
- float midi = ((float) i) + 0.5f;
- hv[0][i][2] = rMin * Math.cos(phi0 + midi * deltaPhi);
- hv[1][i][2] = rMin * Math.sin(phi0 + midi * deltaPhi);
-
- int offi = i + (numPhi);
- hv[0][offi][0] = rMin * Math.cos(phi0 + midi * deltaPhi);
- hv[1][offi][0] = rMin * Math.sin(phi0 + midi * deltaPhi);
-
- hv[0][offi][1] = rMax * Math.cos(phi0 + (i + 1) * deltaPhi);
- hv[1][offi][1] = rMax * Math.sin(phi0 + (i + 1) * deltaPhi);
-
- hv[0][offi][2] = rMin * Math.cos(phi0 + (midi + 1) * deltaPhi);
- hv[1][offi][2] = rMin * Math.sin(phi0 + (midi + 1) * deltaPhi);
- }
-
- return hv;
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/geometry/ADetectorSystem.java b/graphics/AtlantisJava/src/atlantis/geometry/ADetectorSystem.java
deleted file mode 100755
index e0c93a93856..00000000000
--- a/graphics/AtlantisJava/src/atlantis/geometry/ADetectorSystem.java
+++ /dev/null
@@ -1,122 +0,0 @@
-package atlantis.geometry;
-
-
-import java.awt.*;
-
-import atlantis.canvas.*;
-import atlantis.graphics.*;
-import atlantis.graphics.colormap.AColorMap;
-import atlantis.gui.*;
-import atlantis.parameters.*;
-import atlantis.projection.*;
-
-
-public class ADetectorSystem
-{
-
- private ADetectors[] detectors;
- protected static String geometryName = null;
-
- protected static APar parameterStore = APar.instance();
-
- ADetectorSystem(ADetectors[] detectors)
- {
- this.detectors=detectors;
- }
-
- public ADetectors[] getDetectors()
- {
- return detectors;
- }
-
- // The whole of atlas is drawn in one loop to avoid problem with frames
- // overlapping
-
-
- public void draw(AWindow window, AGraphics ag, AProjection2D projection)
- {
- if(!parameterStore.get("Det", "Detectors").getStatus()) return;
- boolean drawFrames=parameterStore.get("Det", "HideDetectors").getStatus();
- //also draw frames for Grey/BW color maps
- boolean colorBW=AColorMap.drawFrames();
- Color[] colorMap=AColorMap.getColors();
- ADetectors[] detectors=getDetectors();
- ACoord[] display=new ACoord[detectors.length];
- int[][] index=new int[detectors.length][];
- int[][] detColor=new int[detectors.length][];
- boolean[][] draw=new boolean[detectors.length][];
- int bkgColor = parameterStore.get("Color","BkgFill").getI();
-
- for(int det=0; det<detectors.length; ++det) {
- display[det]=window.calculateDisplay(detectors[det].getUser(projection));
- index[det]=display[det].index;
- detColor[det]=detectors[det].getColor(index[det]);
- draw[det]=detectors[det].getDraw(index[det]);
- }
-
- boolean modeSelection = parameterStore.get(projection.getName(), "Mode").getI()==0
- ||(parameterStore.get(projection.getName(), "Mode").getI()>8
- &&(projection instanceof AProjectionYX||projection instanceof AProjectionFR));
-
- for(int layer=0; layer<2; ++layer)
- {
- for(int det=0; det<detectors.length; ++det)
- {
- ADrawParameters dp=detectors[det].getDrawParameters(layer, 0);
- ag.updateDrawParameters(dp);
- for(int i=0; i<display[det].hv[0].length; ++i)
- {
- int numPoints=display[det].hv[0][i].length;
- ag.setColor(colorMap[detColor[det][i]]);
- if(draw[det][i]&& numPoints>0)
- {
- if(modeSelection)
- {
- if(layer==0 && (drawFrames||colorBW))
- {
- if(colorBW)
- ag.setColor(colorMap[AColorMap.BK]);
- ag.drawPolygon(display[det].hv[0][i], display[det].hv[1][i], numPoints);
- }
- else if(layer==1)
- {
- if(drawFrames)
- ag.setColor(colorMap[bkgColor]);
- ag.fillPolygon(detectors[det], index[det][i], display[det].hv[0][i],
- display[det].hv[1][i], numPoints);
- }
- }
- else
- {
- if(layer==0)
- {
- if(drawFrames)
- ag.setColor(colorMap[bkgColor]);
- ag.fillPolygon(detectors[det], index[det][i], display[det].hv[0][i],
- display[det].hv[1][i], numPoints);
- }
- else if(layer==1 && (drawFrames||colorBW))
- {
- if(colorBW)
- ag.setColor(colorMap[AColorMap.BK]);
- ag.drawPolygon(display[det].hv[0][i], display[det].hv[1][i], numPoints);
- }
- }
- }
- }
- }
- }
- ABarrelSiliconDetector.drawAdditionalItems(window, ag, projection);
- AEndcapSiliconDetector.drawAdditionalItems(window, ag, projection);
- ABarrelTRTDetector.drawAdditionalItems(window, ag, projection);
- AEndcapTRTDetector.drawAdditionalItems(window, ag, projection);
- ACalorimeterDetector.drawAdditionalItems(window, ag, projection);
- }
-
- public static String getGeometryName()
- {
- return geometryName == null ? "n/a" : geometryName;
-
- } // getName() ------------------------------------------------------------
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/geometry/ADetectors.java b/graphics/AtlantisJava/src/atlantis/geometry/ADetectors.java
deleted file mode 100755
index 1f11913e80d..00000000000
--- a/graphics/AtlantisJava/src/atlantis/geometry/ADetectors.java
+++ /dev/null
@@ -1,114 +0,0 @@
-package atlantis.geometry;
-
-import atlantis.graphics.*;
-import atlantis.parameters.APar;
-import atlantis.projection.*;
-
-/**
- * Base class of all collections of detectors
- * All non muon geometry is in AGeometry.xml
- * All muon geometry is in AMuonGeometry.xml
- * ADetectors is the interface to the rest of the program and contains
- * collections of detectors.
- * When a line in our XML file describes several detectors these are stored
- * individually.
- */
-public abstract class ADetectors {
-
- protected ADetector[] det=null;
-
- protected int[] listdl;
- protected int numDraw;
- protected int numData;
-
- protected static APar parameterStore = APar.instance();
-
- public ADetectors(ADetector[] det) {
- this.det=det;
- numData=det.length;
- numDraw=0;
- listdl=new int[numData];
- }
-
- public ADetector[] getDetectors() {
- return det;
- }
-
- protected void constructDefaultDrawList() {
- numDraw=numData;
- for(int i=0; i<numDraw; ++i)
- listdl[i]=i;
- }
-
- protected void makeDrawList(String projection){
- constructDefaultDrawList();
- }
-
- protected ACoord getUser(String projection) {
- makeDrawList(projection);
- int[] numPoly = new int[numDraw];
- int numTotal = 0;
- for (int i=0; i<numDraw; i++) {
- int len = det[listdl[i]].getUser(projection).hv[0].length;
- numPoly[i] = len;
- numTotal += len;
- }
- double[][][] hv = new double[2][numTotal][];
- int[] index = new int[numTotal];
- for (int i=0, k=0; i<numDraw; i++) {
- double temp[][][] = det[listdl[i]].getUser(projection).hv;
- for(int j = 0; j < numPoly[i]; j++, k++) {
- hv[0][k] = temp[0][j];
- hv[1][k] = temp[1][j];
- index[k] = listdl[i];
- }
- }
- return new ACoord(hv, index);
- }
-
- protected int[] getColor(int[] dl) {
- int[] col=new int[dl.length];
-
- for(int i=0; i<dl.length; ++i)
- col[i]=det[dl[i]].getFillColor();
- return col;
- }
-
- protected boolean[] getDraw(int[] dl) {
- boolean[] draw=new boolean[dl.length];
-
- for(int i=0; i<dl.length; ++i)
- draw[i]=det[dl[i]].getDraw();
- return draw;
- }
-
- public String getInfo(int index) {
- return det[index].getName();
- }
-
- protected ADrawParameters getDrawParameters(int layer, int type) {
- if(layer==0)
- return new ADrawParameters(true, 0, 0, 0, 1, 0);
- else
- return new ADrawParameters(true, 0, 0, 1, 0, 0);
- }
-
- protected ACoord getUserNoTransform(AProjection projection) {
- String name=projection.getName();
- ACoord data=getUser(name);
- if(name.charAt(0)=='F')
- data.includePhiWrapAround(name);
- return data;
- }
-
- protected ACoord getUser(AProjection2D projection) {
- return projection.nonLinearTransform(getUserNoTransform(projection));
- }
-
- /*
- protected void draw(AWindow window,AGraphics ag,AProjection2D projection) {
- // in a simple world the implementation would be here
- throw new RuntimeException();
- }
- */
-}
diff --git a/graphics/AtlantisJava/src/atlantis/geometry/ADiscDetector.java b/graphics/AtlantisJava/src/atlantis/geometry/ADiscDetector.java
deleted file mode 100755
index a8241c1889c..00000000000
--- a/graphics/AtlantisJava/src/atlantis/geometry/ADiscDetector.java
+++ /dev/null
@@ -1,57 +0,0 @@
-package atlantis.geometry;
-
-import atlantis.utils.*;
-import atlantis.graphics.ACoord;
-
-public class ADiscDetector extends ADetector {
-
- double rInner;
- double rOuter;
- int nInner;
- int nOuter;
-
- ADiscDetector(String name, String projection, String color, double rInner, double rOuter, int nInner, int nOuter) {
- super(name, projection, color);
- this.rInner=rInner;
- this.nInner=nInner;
- this.rOuter=rOuter;
- this.nOuter=nOuter;
- }
-
- protected ACoord getYXUser() {
- if (!projection.equals("YX")) {
- return ACoord.NO_DATA;
- }
-
- if (!globals.getUseOpenGL()) {
- int numPoints = nInner + nOuter + 2;
- double[][] hv = new double[2][numPoints];
-
- for (int j = 0; j < nInner + 1; j++) {
- hv[0][j] = rInner * Math.cos(Math.PI * 2 * j / nInner);
- hv[1][j] = rInner * Math.sin(Math.PI * 2 * j / nInner);
- }
- for (int j = 0; j < nOuter + 1; j++) {
- hv[0][j + nInner + 1] = rOuter * Math.cos(Math.PI * 2 * (nOuter - j) / nOuter);
- hv[1][j + nInner + 1] = rOuter * Math.sin(Math.PI * 2 * (nOuter - j) / nOuter);
- }
- return new ACoord(hv);
- } else {
- //FIXME:
- //Note that generateAnnulusTris can't really handle this different number
- //of inner and outer points thing so we're just going to take the mean here
- //Maybe one day we fix this somehow or just remove one of the ns
- //All the other round detectors get along fine without it...
- // -- Adam
- return new ACoord(generateAnnulusTris((nInner + nOuter) / 2, 0.0, rInner, rOuter));
- }
- }
-
- protected ACoord getFRUser() {
- if(!projection.equals("FR")) return ACoord.NO_DATA;
- return new ACoord (AMath.xBox((rInner+rOuter)/2.,(rOuter-rInner)/2.),
- AMath.yBox(180.,180.));
- }
-
-}
-
diff --git a/graphics/AtlantisJava/src/atlantis/geometry/AEndcapCalorimeterDetector.java b/graphics/AtlantisJava/src/atlantis/geometry/AEndcapCalorimeterDetector.java
deleted file mode 100755
index a5df48ac54f..00000000000
--- a/graphics/AtlantisJava/src/atlantis/geometry/AEndcapCalorimeterDetector.java
+++ /dev/null
@@ -1,328 +0,0 @@
-package atlantis.geometry;
-
-import atlantis.graphics.ACoord;
-import atlantis.graphics.AClipper;
-import atlantis.projection.AProjectionYX;
-import atlantis.utils.AMath;
-
-/**
- * Class representing a calorimeter part in the endcap section of ATLAS.
- */
-public class AEndcapCalorimeterDetector extends ACalorimeterDetector {
-
- /**
- * Constructs a new endcap calorimeter object
- * @param name String name of the object
- * @param color String name of the color used to draw this object
- * @param sampling int sampling of this calorimeter part
- * @param region int region of this calorimeter part
- * @param rMin double inner radius
- * @param rMax double outer radius
- * @param zMin double inner z
- * @param zMax double outer z
- * @param eta0 double start of the first cell in eta
- * @param deta double size of a cell in eta
- * @param neta int number of cells in eta
- * @param meta int eta index of the first cell
- * @param phi0 double start of the first cell in phi
- * @param nphi int number of cells in phi
- */
- public AEndcapCalorimeterDetector(String name, String color, int sampling, int region,
- double rMin, double rMax, double zMin, double zMax,
- double eta0, double deta, int neta, int meta,
- double phi0, int nphi) {
- super(name, color);
-
- this.sampling = sampling;
- this.region = region;
- this.rMin = rMin;
- this.rMax = rMax;
- this.zMin = zMin;
- this.zMax = zMax;
- this.eta0 = eta0;
- this.deltaEta = deta;
- this.numEta = neta;
- this.minEta = meta;
- this.phi0 = Math.toRadians(phi0);
- this.numPhi = nphi;
- this.deltaPhi = 2.*Math.PI / numPhi;
-
- this.detEtaMin = AMath.etaAbs(this.zMin, this.rMax);
- this.detEtaMax = AMath.etaAbs(this.zMax, this.rMax);
-
- // This one is used for clipping the cell geometry in rho-z.
- this.clipper = new AClipper(zMin, zMax, rMin, rMax);
-
- // These arrays are used by the getDetectorIndex() method in ACalorimeterData.
- // They provide fast mapping of hits to detectors.
- if (this.name.indexOf("LAr") >= 0 && this.name.indexOf("Inner") >= 0
- && this.sampling < lar[3].length && this.region < lar[3][this.sampling].length) {
-
- lar[3][this.sampling][this.region] = detectors.indexOf(this);
- } else if (this.name.indexOf("LAr") >= 0 && this.sampling < lar[2].length
- && this.region < lar[2][this.sampling].length) {
-
- lar[2][this.sampling][this.region] = detectors.indexOf(this);
- } else if (this.name.equals("HEC") && this.sampling < hec.length
- && this.region < hec[this.sampling].length) {
-
- hec[this.sampling][this.region] = detectors.indexOf(this);
- } else {
- System.out.println("Unknown calorimeter object: '" + this.name + "'"
- + " some hits might not be displayed correctly.");
- }
- }
-
- /**
- * Returns the y-x geometry of the full calorimeter part.
- * @return ACoord polygons representing geometry
- */
- protected ACoord getYXUser() {
- int mode = parameterStore.get("YX", "Mode").getI();
- if ( mode < AProjectionYX.MODE_LAR_ENDCAP_PRESAMPLER)
- return ACoord.NO_DATA;
- else if((mode==AProjectionYX.MODE_LAR_ENDCAP_PRESAMPLER && (name.equals("LAr Endcap Presampler")||name.equals("LAr_EC_Presampler")))
- || (name.equals("LAr Outer Endcap") && sampling==mode-AProjectionYX.MODE_LAR_ENDCAP_PRESAMPLER)
- || (name.equals("LAr Inner Endcap") && sampling==mode-AProjectionYX.MODE_LAR_ENDCAP_PRESAMPLER-1)
- || (name.equals("HEC") && sampling==mode-AProjectionYX.MODE_HEC_1)
- || (mode==AProjectionYX.MODE_LAR_ENDCAP_SUMMED && name.indexOf("LAr")>=0)
- || (mode==AProjectionYX.MODE_HEC_SUMMED && name.equals("HEC")))
- {
-
- double etaMax = eta0 + numEta * deltaEta;
- double etaMin = eta0;
- double r1, r2;
- if (name.equals("HEC"))
- {
- r1=rMax;
- r2=rMin;
- }
- else
- {
- if (name.indexOf("Inner") >= 0 || name.indexOf("Presampler") >= 0)
- r1 = zMin/Math.sinh(etaMin);
- else
- r1=rMax;
- r2 = zMin/Math.sinh(etaMax);
- }
-
- if (!globals.getUseOpenGL()) {
- int numPoints = 2 * (numPhi + 1);
- double[][] hv = new double[2][numPoints];
- for (int i = 0; i < numPhi + 1; i++) {
- hv[0][i] = r2 * Math.cos(phi0 + i * deltaPhi);
- hv[1][i] = r2 * Math.sin(phi0 + i * deltaPhi);
- hv[0][numPhi + 1 + i] = r1 * Math.cos(phi0 - i * deltaPhi);
- hv[1][numPhi + 1 + i] = r1 * Math.sin(phi0 - i * deltaPhi);
- }
- return new ACoord(hv);
- } else {
- return new ACoord(generateAnnulusTris(numPhi, phi0, r1, r2));
- }
- }
- else
- return ACoord.NO_DATA;
- }
-
- /**
- * Returns the rho-z geometry of the full calorimeter part.
- * @return ACoord polygons representing geometry
- */
- protected ACoord getRZUser() {
- double h[], v[];
- double etaMax = eta0 + numEta * deltaEta;
- double etaMin = eta0;
-
- // Calculate the polygon in the positive h and v.
- if (name.indexOf("HEC") >= 0) {
- h = new double[] {zMax, zMin, zMin, zMax};
- v = new double[] {rMax, rMax, rMin, rMin};
- } else {
- double r0 = zMax/Math.sinh(etaMin);
- double r1 = zMin/Math.sinh(etaMin);
- double r2 = zMin/Math.sinh(etaMax);
- double r3 = zMax/Math.sinh(etaMax);
-
- h = new double[] {zMax, zMin, zMin, zMax};
- v = new double[] {r0, r1, r2, r3};
- }
-
- // Clip the polygon.
- ACoord coord = clipper.clipPolygon(h, v, h.length);
-
- // Copy it to negative v.
- coord = new ACoord(coord, coord.mirrorV());
- // Copy it to negative h.
- coord = new ACoord(coord, coord.mirrorH());
-
- return coord;
- }
-
- /**
- * Returns the phi-rho geometry of the full calorimeter part.
- * @return ACoord polygons representing geometry
- */
- protected ACoord getFRUser() {
- return getYXUser().convertYXToFR();
- }
-
- /**
- * Returns the phi-z geometry of the full calorimeter part.
- * @return ACoord polygons representing geometry
- */
- protected ACoord getFZUser() {
- double[][][] hv = new double[2][2][];
- double phiMin = 0.;
- double phiMax = 360.;
- hv[0][0] = new double[] { zMax, zMin, zMin, zMax};
- hv[1][0] = new double[] {phiMax, phiMax, phiMin, phiMin};
- hv[0][1] = new double[] { -zMax, -zMin, -zMin, -zMax};
- hv[1][1] = new double[] {phiMax, phiMax, phiMin, phiMin};
- return new ACoord(hv);
- }
-
- /**
- * Returns the y-x geometry of a specific cell in this calorimeter part.
- * @param eta int eta index of cell
- * @param phi int phi index of cell
- * @return ACoord polygon representing cell geometry
- */
- public ACoord getYXCell(int eta, int phi)
- {
- int mode = parameterStore.get("YX", "Mode").getI();
- if(mode < AProjectionYX.MODE_LAR_ENDCAP_PRESAMPLER || mode > AProjectionYX.MODE_HEC_SUMMED)
- return ACoord.NO_DATA;
- else if((mode==AProjectionYX.MODE_LAR_ENDCAP_SUMMED && name.indexOf("LAr")>=0)
- || (mode==AProjectionYX.MODE_HEC_SUMMED && name.equals("HEC")))
- {
- //don't need to carry out calculation just needs return a blank ACoord
- double[][] hv = new double[2][];
- hv[0] = new double[] {0};
- hv[1] = new double[] {0};
- return new ACoord(hv);
- }
- else if((mode==AProjectionYX.MODE_LAR_ENDCAP_PRESAMPLER && (name.equals("LAr Endcap Presampler") || name.equals("LAr_EC_Presampler")))
- || (name.equals("LAr Outer Endcap") && sampling==mode-AProjectionYX.MODE_LAR_ENDCAP_PRESAMPLER)
- || (name.equals("LAr Inner Endcap") && sampling==mode-AProjectionYX.MODE_LAR_ENDCAP_PRESAMPLER-1)
- || (name.equals("HEC") && sampling==mode-AProjectionYX.MODE_HEC_1))
- {
- double[][] hv = new double[2][];
- double phiMin = phi0+phi*deltaPhi;
- double phiMax = phiMin+deltaPhi;
- double newrMax=0, newrMin=0;
- double etaMin = eta0+(eta-minEta)*deltaEta;
- double etaMax = etaMin+deltaEta;
- newrMax=zMin/Math.sinh(etaMin);
- newrMin=zMin/Math.sinh(etaMax);
- if (name.equals("HEC"))
- {
- if(newrMax>rMax)
- newrMax=rMax;
- if(newrMin<rMin)
- newrMin=rMin;
- }
- hv[0] = new double[] {newrMax*Math.cos(phiMin), newrMax*Math.cos(phiMax),
- newrMin*Math.cos(phiMax), newrMin*Math.cos(phiMin)};
- hv[1] = new double[] {newrMax*Math.sin(phiMin), newrMax*Math.sin(phiMax),
- newrMin*Math.sin(phiMax), newrMin*Math.sin(phiMin)};
- return new ACoord(hv);
- }
- else
- return ACoord.NO_DATA;
- }
-
- /**
- * Returns the rho-z geometry of a specific cell in this calorimeter part.
- * @param eta int eta index of cell
- * @param phi int phi index of cell
- * @param side int sign of the z coordinate of cell
- * @return ACoord polygon representing cell geometry
- */
- public ACoord getRZCell(int eta, int phi, int side) {
- double[][] hv = new double[2][];
- int sign = getRSign(phi);
-
- // This shouldn't be 0, but just to be on the safe side.
- if (side != 0) side /= Math.abs(side);
-
- double etaMin = eta0+(eta-minEta)*deltaEta;
- double etaMax = etaMin+deltaEta;
-
- if (name.indexOf("HEC") >= 0) {
- if (sampling == 0) {
- double rMin = (zMin+zMax)/2. / Math.sinh(etaMax);
- double rMax = (zMin+zMax)/2. / Math.sinh(etaMin);
-
- hv[0] = new double[] {zMax, zMin, zMin, zMax};
- hv[1] = new double[] {rMax, rMax, rMin, rMin};
- } else {
- double dz = (zMax-zMin);
- double z0 = zMin;
- double z1 = zMin+dz/2.;
- double z2 = zMax;
- double r0 = (zMin+dz/4.) / Math.sinh(etaMax);
- double r1 = (zMax-dz/4.) / Math.sinh(etaMax);
- double r2 = (zMin+dz/4.) / Math.sinh(etaMin);
- double r3 = (zMax-dz/4.) / Math.sinh(etaMin);
-
- hv[0] = new double[] {z2, z1, z1, z0, z0, z1, z1, z2};
- hv[1] = new double[] {r3, r3, r2, r2, r0, r0, r1, r1};
- }
- } else {
- hv[0] = new double[] {zMax, zMin, zMin, zMax};
- hv[1] = new double[] {zMax/Math.sinh(etaMin), zMin/Math.sinh(etaMin),
- zMin/Math.sinh(etaMax), zMax/Math.sinh(etaMax)};
- }
-
- // Clip the cell and send it to the right quadrant.
- ACoord coord = clipper.clipPolygon(hv[0], hv[1], hv[0].length);
- for (int i=0; i<coord.hv[0][0].length; i++) {
- coord.hv[0][0][i] *= side;
- coord.hv[1][0][i] *= sign;
- }
-
- return coord;
- }
-
- /**
- * Returns the phi-z geometry of a specific cell in this calorimeter part.
- * @param eta int eta index of cell
- * @param phi int phi index of cell
- * @param side int sign of the z coordinate of cell
- * @return ACoord
- */
- public ACoord getFZCell(int eta, int phi, int side) {
- double[][] hv = new double[2][];
- double phiMin = Math.toDegrees(phi0 + phi*deltaPhi);
- double phiMax = phiMin + Math.toDegrees(deltaPhi);
-
- side /= Math.abs(side);
-
- hv[0] = new double[] {side*zMax, side*zMin, side*zMin, side*zMax};
- hv[1] = new double[] { phiMax, phiMax, phiMin, phiMin};
-
- return new ACoord(hv);
- }
-
- /**
- * Returns the eta-phi geometry of a specific cell in this calorimeter part.
- * @param eta int eta index of cell
- * @param phi int phi index of cell
- * @param side int sign of the z coordinate of cell
- * @return ACoord polygon representing cell geometry
- */
- public ACoord getVPCell(int eta, int phi, int side) {
- double[][] hv = new double[2][];
- double etaMin = eta0+(eta-minEta)*deltaEta;
- double etaMax = etaMin+deltaEta;
- double phiMin = Math.toDegrees(phi0 + phi*deltaPhi);
- double phiMax = phiMin + Math.toDegrees(deltaPhi);
-
- side /= Math.abs(side);
-
- hv[0] = new double[] {side*etaMax, side*etaMin, side*etaMin, side*etaMax};
- hv[1] = new double[] { phiMax, phiMax, phiMin, phiMin};
-
- return new ACoord(hv);
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/geometry/AEndcapCryostatDetector.java b/graphics/AtlantisJava/src/atlantis/geometry/AEndcapCryostatDetector.java
deleted file mode 100755
index 8d1122eba4b..00000000000
--- a/graphics/AtlantisJava/src/atlantis/geometry/AEndcapCryostatDetector.java
+++ /dev/null
@@ -1,158 +0,0 @@
-package atlantis.geometry;
-
-import atlantis.graphics.ACoord;
-import atlantis.graphics.AClipper;
-import atlantis.projection.AProjectionYX;
-import atlantis.utils.AMath;
-
-/**
- * Class representing a detector part in the endcap cryostat section of ATLAS.
- */
-public class AEndcapCryostatDetector extends ACalorimeterDetector {
-
- /**
- * Constructs a new endcap calorimeter object
- * @param name String name of the object
- * @param color String name of the color used to draw this object
- * @param sampling int sampling of this calorimeter part
- * @param region int region of this calorimeter part
- * @param rMin double inner radius
- * @param rMax double outer radius
- * @param zMin double inner z
- * @param zMax double outer z
- * @param neta int number of cells in eta
- * @param nphi int number of cells in phi
- */
- public AEndcapCryostatDetector(String name, String color, int sampling, int region, double rMin,
- double rMax, double zMin, double zMax, int neta, int nphi) {
- super(name, color);
-
- this.sampling = sampling;
- this.region = region;
- this.rMin = rMin;
- this.rMax = rMax;
- this.zMin = zMin;
- this.zMax = zMax;
- this.numEta = neta;
- this.numPhi = nphi;
- this.deltaPhi = 2.*Math.PI / numPhi;
- this.phi0 = 0.0;
- this.eta0 = AMath.etaAbs(this.zMin, this.rMin);
-
- this.detEtaMin = AMath.etaAbs(this.zMin, this.rMax);
- this.detEtaMax = AMath.etaAbs(this.zMax, this.rMax);
-
- // This one is used for clipping the cell geometry in rho-z.
- this.clipper = new AClipper(zMin, zMax, rMin, rMax);
-
- // These arrays are used by the getDetectorIndex() method in ACalorimeterData.
- // They provide fast mapping of hits to detectors.
- if (this.name.equals("Minimum Bias Trigger Scintillators")) {
- mbts[this.sampling] = detectors.indexOf(this);
- } else {
- System.out.println("Unknown calorimeter object: '" + this.name + "'"
- + " some hits might not be displayed correctly.");
- }
- }
-
- /**
- * Returns the y-x geometry of the full calorimeter part.
- * @return ACoord polygons representing geometry
- */
- protected ACoord getYXUser() {
- int mode = parameterStore.get("YX", "Mode").getI();
- if (mode!=AProjectionYX.MODE_MBTS)
- return ACoord.NO_DATA;
- else
- {
- if (!globals.getUseOpenGL()) {
- int numPoints = 2 * (numPhi + 1);
- double[][] hv = new double[2][numPoints];
- for (int j = 0; j < numPhi + 1; j++) {
- hv[0][j] = rMin * Math.cos(Math.PI * 2 * j / numPhi);
- hv[1][j] = rMin * Math.sin(Math.PI * 2 * j / numPhi);
- }
- for (int j = 0; j < numPhi + 1; j++) {
- hv[0][j + numPhi + 1] = rMax * Math.cos(Math.PI * 2 * (numPhi - j) / numPhi);
- hv[1][j + numPhi + 1] = rMax * Math.sin(Math.PI * 2 * (numPhi - j) / numPhi);
- }
- return new ACoord(hv);
- } else {
- return new ACoord(generateAnnulusTris(numPhi, phi0, rMin, rMax));
- }
- }
- }
-
- /**
- * Returns the rho-z geometry of the full calorimeter part.
- * @return ACoord polygons representing geometry
- */
- protected ACoord getRZUser() {
- double h[], v[];
- // Calculate the polygon in the positive h and v.
- h = new double[] {zMax, zMin, zMin, zMax};
- v = new double[] {rMax, rMax, rMin, rMin};
- // Clip the polygon.
- ACoord coord = clipper.clipPolygon(h, v, h.length);
- // Copy it to negative v.
- coord = new ACoord(coord, coord.mirrorV());
- // Copy it to negative h.
- coord = new ACoord(coord, coord.mirrorH());
- return coord;
- }
-
- /**
- * Returns the phi-rho geometry of the full calorimeter part.
- * @return ACoord polygons representing geometry
- */
- protected ACoord getFRUser() {
- return getYXUser().convertYXToFR();
- }
-
- /**
- * Returns the y-x geometry of a specific cell in this calorimeter part.
- * @param eta int eta index of cell
- * @param phi int phi index of cell
- * @return ACoord polygon representing cell geometry
- */
- public ACoord getYXCell(int eta, int phi)
- {
- int mode = parameterStore.get("YX", "Mode").getI();
- if(mode!=AProjectionYX.MODE_MBTS)
- return ACoord.NO_DATA;
- else
- {
- double[][] hv = new double[2][];
- double phiMin = Math.PI*2*phi/numPhi;
- double phiMax = Math.PI*2*(1+phi)/numPhi;
- hv[0] = new double[] {rMax*Math.cos(phiMin), rMax*Math.cos(phiMax),
- rMin*Math.cos(phiMax), rMin*Math.cos(phiMin)};
- hv[1] = new double[] {rMax*Math.sin(phiMin), rMax*Math.sin(phiMax),
- rMin*Math.sin(phiMax), rMin*Math.sin(phiMin)};
- return new ACoord(hv);
- }
- }
-
- /**
- * Returns the rho-z geometry of a specific cell in this calorimeter part.
- * @param eta int eta index of cell
- * @param phi int phi index of cell
- * @param side int sign of the z coordinate of cell
- * @return ACoord polygon representing cell geometry
- */
- public ACoord getRZCell(int eta, int phi, int side) {
- double[][] hv = new double[2][];
- int sign = getRSign(phi);
- // This shouldn't be 0, but just to be on the safe side.
- if (side != 0) side /= Math.abs(side);
- hv[0] = new double[] {zMax, zMin, zMin, zMax};
- hv[1] = new double[] {rMax, rMax, rMin, rMin};
- // Clip the cell and send it to the right quadrant.
- ACoord coord = clipper.clipPolygon(hv[0], hv[1], hv[0].length);
- for (int i=0; i<coord.hv[0][0].length; i++) {
- coord.hv[0][0][i] *= side;
- coord.hv[1][0][i] *= sign;
- }
- return coord;
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/geometry/AEndcapSiliconDetector.java b/graphics/AtlantisJava/src/atlantis/geometry/AEndcapSiliconDetector.java
deleted file mode 100755
index e28c5f16869..00000000000
--- a/graphics/AtlantisJava/src/atlantis/geometry/AEndcapSiliconDetector.java
+++ /dev/null
@@ -1,220 +0,0 @@
-package atlantis.geometry;
-
-import atlantis.canvas.AWindow;
-import atlantis.data.AS3DData;
-import atlantis.graphics.ACoord;
-import atlantis.graphics.AGraphics;
-import atlantis.graphics.colormap.AColorMap;
-import atlantis.parameters.AParameter;
-import atlantis.projection.AProjection2D;
-import atlantis.projection.AProjectionFR;
-import atlantis.projection.AProjectionYX;
-import java.awt.Color;
-import java.util.ArrayList;
-import java.util.List;
-
-/**
- * Class representing a pixel/SCT endcap detector part.
- * Also implements methods to draw more detailed structure of the detector.
- *
- * @author Eric Jansen
- */
-public class AEndcapSiliconDetector extends ADetector {
-
- private static List detectors = null;
-
- protected int layer;
- protected double length;
- protected double width;
- protected double thickness;
- protected int numZ;
- protected int numPhi;
- protected double phi0;
- protected double zMin;
- protected double zMax;
-
- protected double deltaPhi;
- protected double deltaZ;
- protected double rMin;
- protected double rMax;
-
- public AEndcapSiliconDetector(String name, String color, int layer, double length, double width, double thickness,
- int numZ, int numPhi, double rMin, double rMax, double phi0, double zMin, double zMax) {
- super(name, " ", color);
-
- if (detectors == null) {
- detectors = new ArrayList();
- }
- detectors.add(this);
-
- this.layer = layer;
- this.length = length;
- this.width = width;
- this.thickness = thickness;
- this.numZ = numZ;
- this.numPhi = numPhi;
- this.rMin = rMin;
- this.rMax = rMax;
- this.phi0 = Math.toRadians(phi0);
- this.zMin = zMin;
- this.zMax = zMax;
-
- this.deltaPhi = 2.*Math.PI / this.numPhi;
- this.deltaZ = (this.zMax - this.zMin) / this.numZ;
- }
-
- /**
- * Empties the list of instances of this class.
- */
- public static void clear() {
- if (detectors != null) {
- detectors.clear();
- }
- }
-
- /**
- * This function draws the wafer/stave structure of the silicon detectors. It is called
- * from ADetectorSystem.draw().
- * @param window AWindow window to use
- * @param ag AGraphics graphics object to draw onto
- * @param projection AProjection2D current projection
- */
- public static void drawAdditionalItems(AWindow window, AGraphics ag, AProjection2D projection) {
- AParameter inDetDetail = parameterStore.getUnknown("Det", "SiliconDetail");
- if (inDetDetail != null && detectors != null && inDetDetail.getStatus()) {
- for (int i=0; i<detectors.size(); i++) {
- ACoord coord = ACoord.NO_DATA;
- AEndcapSiliconDetector detector = (AEndcapSiliconDetector) detectors.get(i);
- if (projection instanceof AProjectionYX) {
- coord = detector.getYXDetail();
- } else if (projection instanceof AProjectionFR) {
- coord = detector.getYXDetail().convertYXToFR().includePhiWrapAround("FR");
- }
-
- if (coord != ACoord.NO_DATA) {
- Color[] colorMap = AColorMap.getColors();
- ag.setColor(colorMap[parameterStore.get("Det", "SiliconDetail").getI()]);
-
- ACoord display = window.calculateDisplay(projection.nonLinearTransform(coord));
- for (int j=0; j<display.hv[0].length; j++) {
- ag.drawPolygon(display.hv[0][j], display.hv[1][j], display.hv[0][j].length);
- }
- }
- }
- }
- }
-
- /**
- * Determines if this element should be visible or not.
- * @return visibility
- */
- protected boolean isVisible() {
- int cut = parameterStore.get("CutsInDet", "SCT").getI();
-
- if (cut == AS3DData.CUT_INDET_SCT_ALL || cut == AS3DData.CUT_INDET_SCT_EC_NEG
- || cut == AS3DData.CUT_INDET_SCT_EC_POS) {
- return true;
- } else {
- return false;
- }
- }
-
- /**
- * Returns the detector outline in the y-x projection.
- * @return ACoord polygon representing the detector
- */
- protected ACoord getYXUser() {
- if (parameterStore.get("YX", "Mode").getI() != AProjectionYX.MODE_STANDARD) return ACoord.NO_DATA;
- if (!isVisible()) return ACoord.NO_DATA;
-
- if (!globals.getUseOpenGL()) {
- int numPoints = 2 * (numPhi + 1);
- double[][] hv = new double[2][numPoints];
-
- for (int i = 0; i < numPhi + 1; i++) {
- hv[0][i] = rMin * Math.cos(phi0 + (i + 0.5) * deltaPhi);
- hv[1][i] = rMin * Math.sin(phi0 + (i + 0.5) * deltaPhi);
-
- hv[0][numPhi + 1 + i] = rMax * Math.cos(phi0 - (i + 0.5) * deltaPhi);
- hv[1][numPhi + 1 + i] = rMax * Math.sin(phi0 - (i + 0.5) * deltaPhi);
- }
- return new ACoord(hv);
- } else {
- return new ACoord(generateAnnulusTris(numPhi, phi0, rMin, rMax));
- }
- }
-
- /**
- * Returns the detector outline in the rho-z projection.
- * @return ACoord polygon representing the detector
- */
- protected ACoord getRZUser() {
- double[][][] hv = new double[2][4][];
-
- hv[0][0] = new double[] { zMax, zMin, zMin, zMax};
- hv[1][0] = new double[] { rMax, rMax, rMin, rMin};
- hv[0][1] = new double[] { zMax, zMin, zMin, zMax};
- hv[1][1] = new double[] {-rMin, -rMin, -rMax, -rMax};
-
- hv[0][2] = new double[] {-zMax, -zMin, -zMin, -zMax};
- hv[1][2] = new double[] { rMax, rMax, rMin, rMin};
- hv[0][3] = new double[] {-zMax, -zMin, -zMin, -zMax};
- hv[1][3] = new double[] {-rMin, -rMin, -rMax, -rMax};
-
- return new ACoord(hv);
- }
-
- /**
- * Returns the detector outline in the phi-z projection.
- * @return ACoord polygon representing the detector
- */
- protected ACoord getFZUser() {
- if (!isVisible()) return ACoord.NO_DATA;
-
- double[][][] hv = new double[2][2][];
-
- hv[0][0] = new double[] {zMax, zMin, zMin, zMax};
- hv[1][0] = new double[] {360., 360., 0., 0.};
- hv[0][1] = new double[] {-zMax, -zMin, -zMin, -zMax};
- hv[1][1] = new double[] {360., 360., 0., 0.};
-
- return new ACoord(hv);
- }
-
- /**
- * Returns the detector outline in the phi-rho projection.
- * @return ACoord polygon representing the detector
- */
- protected ACoord getFRUser() {
- if (!isVisible()) return ACoord.NO_DATA;
-
- return getYXUser().convertYXToFR();
- }
-
- /**
- * Returns the wafer/stave structure in the y-x projection.
- * @return ACoord polygons representing the wafers/staves
- */
- protected ACoord getYXDetail() {
- if (parameterStore.get("YX", "Mode").getI() != AProjectionYX.MODE_STANDARD) return ACoord.NO_DATA;
- if (!isVisible()) return ACoord.NO_DATA;
-
- double[][][] hv = new double[2][numPhi][];
- for (int i=0; i<numPhi; i++) {
- hv[0][i] = new double[] {
- rMax*Math.sin(phi0+(i-0.5)*deltaPhi),
- rMax*Math.sin(phi0+(i+0.5)*deltaPhi),
- rMin*Math.sin(phi0+(i+0.5)*deltaPhi),
- rMin*Math.sin(phi0+(i-0.5)*deltaPhi)
- };
- hv[1][i] = new double[] {
- rMax*Math.cos(phi0+(i-0.5)*deltaPhi),
- rMax*Math.cos(phi0+(i+0.5)*deltaPhi),
- rMin*Math.cos(phi0+(i+0.5)*deltaPhi),
- rMin*Math.cos(phi0+(i-0.5)*deltaPhi)
- };
- }
-
- return new ACoord(hv);
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/geometry/AEndcapTRTDetector.java b/graphics/AtlantisJava/src/atlantis/geometry/AEndcapTRTDetector.java
deleted file mode 100755
index a23bfaf0d02..00000000000
--- a/graphics/AtlantisJava/src/atlantis/geometry/AEndcapTRTDetector.java
+++ /dev/null
@@ -1,173 +0,0 @@
-package atlantis.geometry;
-
-import atlantis.canvas.AWindow;
-import atlantis.graphics.ACoord;
-import atlantis.graphics.AGraphics;
-import atlantis.graphics.colormap.AColorMap;
-import atlantis.parameters.APar;
-import atlantis.parameters.AParameter;
-import atlantis.projection.AProjection2D;
-import atlantis.projection.AProjectionFZ;
-import atlantis.projection.AProjectionRZ;
-import java.awt.Color;
-import java.util.ArrayList;
-import java.util.List;
-
-/**
- * Class representing a TRT endcap detector part.
- * Also implements methods to draw more detailed structure of the detector.
- *
- * @author Eric Jansen
- */
-public class AEndcapTRTDetector extends ADetector {
-
- private static List detectors = null;
-
- protected int layer;
- protected int numPhi;
- protected double rMin;
- protected double rMax;
- protected double phi0;
- protected double zMin;
- protected double zMax;
- protected double deltaPhi;
-
- public AEndcapTRTDetector(String name, String color, int layer, int numPhi, double rMin, double rMax,
- double phi0, double zMin, double zMax) {
- super(name, " ", color);
-
- if (detectors == null) {
- detectors = new ArrayList();
- }
- detectors.add(this);
-
- this.layer = layer;
- this.numPhi = numPhi;
- this.rMin = rMin;
- this.rMax = rMax;
- this.phi0 = Math.toRadians(phi0);
- this.zMin = zMin;
- this.zMax = zMax;
-
- this.deltaPhi = 2.*Math.PI / numPhi;
- }
-
- /**
- * Empties the list of instances of this class.
- */
- public static void clear() {
- if (detectors != null) {
- detectors.clear();
- }
- }
-
- /**
- * This function draws the module structure of the TRT detector. It is called
- * from ADetectorSystem.draw().
- * @param window AWindow window to use
- * @param ag AGraphics graphics object to draw onto
- * @param projection AProjection2D current projection
- */
- public static void drawAdditionalItems(AWindow window, AGraphics ag, AProjection2D projection) {
- AParameter inDetDetail = parameterStore.getUnknown("Det", "TRTDetail");
- if (inDetDetail != null && detectors != null && inDetDetail.getStatus()) {
- for (int i=0; i<detectors.size(); i++) {
- ACoord coord = ACoord.NO_DATA;
- AEndcapTRTDetector detector = (AEndcapTRTDetector) detectors.get(i);
- if (projection instanceof AProjectionRZ) {
- coord = detector.getRZDetail();
- } else if (projection instanceof AProjectionFZ) {
- coord = detector.getFZDetail();
- }
-
- if (coord != ACoord.NO_DATA) {
- Color[] colorMap = AColorMap.getColors();
- ag.setColor(colorMap[parameterStore.get("Det", "TRTDetail").getI()]);
-
- ACoord display = window.calculateDisplay(projection.nonLinearTransform(coord));
- for (int j=0; j<display.hv[0].length; j++) {
- ag.drawPolygon(display.hv[0][j], display.hv[1][j], display.hv[0][j].length);
- }
- }
- }
- }
- }
-
- /**
- * Returns the detector outline in the y-x projection.
- * @return ACoord polygon representing the detector
- */
- protected ACoord getYXUser() {
- return ACoord.NO_DATA;
- }
-
- /**
- * Returns the detector outline in the rho-z projection.
- * @return ACoord polygon representing the detector
- */
- protected ACoord getRZUser() {
- double[][][] hv = new double[2][4][];
-
- hv[0][0] = new double[] { zMax, zMin, zMin, zMax};
- hv[1][0] = new double[] { rMax, rMax, rMin, rMin};
- hv[0][1] = new double[] { zMax, zMin, zMin, zMax};
- hv[1][1] = new double[] {-rMin, -rMin, -rMax, -rMax};
- hv[0][2] = new double[] {-zMax, -zMin, -zMin, -zMax};
- hv[1][2] = new double[] { rMax, rMax, rMin, rMin};
- hv[0][3] = new double[] {-zMax, -zMin, -zMin, -zMax};
- hv[1][3] = new double[] {-rMin, -rMin, -rMax, -rMax};
-
- return new ACoord(hv);
- }
-
- /**
- * Returns the detector outline in the phi-z projection.
- * @return ACoord polygon representing the detector
- */
- protected ACoord getFZUser() {
- double[][][] hv = new double[2][2][];
-
- hv[0][0] = new double[] {zMax, zMin, zMin, zMax};
- hv[1][0] = new double[] {360., 360., 0., 0.};
- hv[0][1] = new double[] {-zMax, -zMin, -zMin, -zMax};
- hv[1][1] = new double[] {360., 360., 0., 0.};
-
- return new ACoord(hv);
- }
-
- /**
- * Returns the detector outline in the phi-rho projection.
- * @return ACoord polygon representing the detector
- */
- protected ACoord getFRUser() {
- return ACoord.NO_DATA;
- }
-
- /**
- * Returns the module structure in the rho-z projection.
- * @return ACoord polygons representing the modules
- */
- protected ACoord getRZDetail() {
- return ACoord.NO_DATA;
- }
-
- /**
- * Returns the module structure in the phi-z projection.
- * @return ACoord polygons representing the modules
- */
- protected ACoord getFZDetail() {
- double[][][] hv = new double[2][2*numPhi][2];
- for (int i=0; i<numPhi; i++) {
- hv[0][i][0] = zMin;
- hv[1][i][0] = Math.toDegrees(phi0 + i*deltaPhi);
- hv[0][i][1] = zMax;
- hv[1][i][1] = Math.toDegrees(phi0 + i*deltaPhi);
- hv[0][numPhi+i][0] = -zMax;
- hv[1][numPhi+i][0] = Math.toDegrees(phi0 + i*deltaPhi);
- hv[0][numPhi+i][1] = -zMin;
- hv[1][numPhi+i][1] = Math.toDegrees(phi0 + i*deltaPhi);
- }
-
- return new ACoord(hv).includePhiWrapAround("FZ");
- }
-}
\ No newline at end of file
diff --git a/graphics/AtlantisJava/src/atlantis/geometry/AGapCalorimeterDetector.java b/graphics/AtlantisJava/src/atlantis/geometry/AGapCalorimeterDetector.java
deleted file mode 100755
index a27a9872377..00000000000
--- a/graphics/AtlantisJava/src/atlantis/geometry/AGapCalorimeterDetector.java
+++ /dev/null
@@ -1,179 +0,0 @@
-package atlantis.geometry;
-
-import atlantis.graphics.ACoord;
-import atlantis.parameters.AParameterUtilities;
-
-/**
- * Class representing a calorimeter in the gap region between TILE and extended TILE.
- * This is a fairly straightforward implementation of ACalorimeterDetector with only
- * one cell per object.
- *
- * @author Eric Jansen
- */
-public class AGapCalorimeterDetector extends ACalorimeterDetector {
-
- protected int eta;
-
- /**
- * Constructs a new gap calorimeter object (one cell in eta).
- * @param name String name of the object
- * @param color String name of the color used to draw this object
- * @param sampling int sampling of this calorimeter part
- * @param region int region of this calorimeter part
- * @param rMin double inner radius
- * @param rMax double outer radius
- * @param zMin double inner z
- * @param zMax double outer z
- * @param eta int eta index of this cell
- * @param phi0 double start of the first cell in phi
- * @param nphi int number of cells in phi
- */
- public AGapCalorimeterDetector(String name, String color, int sampling, int region,
- double rMin, double rMax, double zMin, double zMax,
- int eta, double phi0, int nphi) {
- super(name, color);
-
- // Just to be sure we take absolute values here.
- this.sampling = Math.abs(sampling);
- this.region = Math.abs(region);
- this.eta = Math.abs(eta);
-
- this.rMin = rMin;
- this.rMax = rMax;
- this.zMin = zMin;
- this.zMax = zMax;
- this.phi0 = Math.toRadians(phi0);
- this.numPhi = nphi;
- this.deltaPhi = 2.*Math.PI/numPhi;
-
- // These arrays are used by the getDetectorIndex() method in ACalorimeterData.
- // They provide fast mapping of hits to detectors.
- if (this.name.indexOf("ITC") >= 0 && this.sampling < tile_gap.length
- && this.eta < tile_gap[this.sampling].length) {
-
- tile_gap[this.sampling][this.eta] = detectors.indexOf(this);
- } else {
- System.out.println("Unknown calorimeter object: '" + this.name + "'"
- + " some hits might not be displayed correctly.");
- }
- }
-
- /**
- * Returns the eta value of the center (in eta) of a cell.
- * @param eta int eta index of the cell
- * @param side int sign of the z coordinate of the cell
- * @return double eta value
- */
- public double getEta(int eta, int side) {
- if (side < 0) {
- return -getEta(eta, -side);
- } else {
- return AParameterUtilities.eta((zMin+zMax)/2.f, (rMin+rMax)/2.f);
- }
- }
-
- /**
- * Returns the lowest eta value of a cell.
- * @param eta int eta index of the cell
- * @param side int sign of the z coordinate of the cell
- * @return double lowest eta value
- */
- public double getEtaMin(int eta, int side) {
- if (side < 0) {
- return -getEtaMax(eta, -side);
- } else {
- return AParameterUtilities.eta((zMin+zMax)/2.f, rMax);
- }
- }
-
- /**
- * Returns the highest eta value of a cell.
- * @param eta int eta index of the cell
- * @param side int sign of the z coordinate of the cell
- * @return double highest eta value
- */
- public double getEtaMax(int eta, int side) {
- if (side < 0) {
- return -getEtaMin(eta, -side);
- } else {
- return AParameterUtilities.eta((zMin+zMax)/2.f, rMin);
- }
- }
-
- /**
- * Returns the rho-z geometry of the full calorimeter part.
- * @return ACoord polygons representing geometry
- */
- protected ACoord getRZUser() {
- double[][][] hv;
- if (zMin < 0) {
- hv = new double[2][2][];
- hv[0][0] = new double[] { zMax, zMin, zMin, zMax};
- hv[1][0] = new double[] { rMax, rMax, rMin, rMin};
- hv[0][1] = new double[] { zMax, zMin, zMin, zMax};
- hv[1][1] = new double[] {-rMin, -rMin, -rMax, -rMax};
- } else {
- hv = new double[2][4][];
- hv[0][0] = new double[] { zMax, zMin, zMin, zMax};
- hv[1][0] = new double[] { rMax, rMax, rMin, rMin};
- hv[0][1] = new double[] { zMax, zMin, zMin, zMax};
- hv[1][1] = new double[] {-rMin, -rMin, -rMax, -rMax};
- hv[0][2] = new double[] {-zMin, -zMax, -zMax, -zMin};
- hv[1][2] = new double[] { rMax, rMax, rMin, rMin};
- hv[0][3] = new double[] {-zMin, -zMax, -zMax, -zMin};
- hv[1][3] = new double[] {-rMin, -rMin, -rMax, -rMax};
- }
- return new ACoord(hv);
- }
-
- /**
- * Returns the rho-z geometry of a specific cell in this calorimeter part.
- * @param eta int eta index of cell
- * @param phi int phi index of cell
- * @param side int sign of the z coordinate of cell
- * @return ACoord polygon representing cell geometry
- */
- public ACoord getRZCell(int eta, int phi, int side) {
- double[][] hv = new double[2][];
- int sign = getRSign(phi);
-
- // This shouldn't be 0, but just to be on the safe side.
- if (side != 0) {
- side /= Math.abs(side);
- }
-
- hv[0] = new double[] {zMax, zMin, zMin, zMax};
- hv[1] = new double[] {rMax, rMax, rMin, rMin};
-
- // Send it to the right quadrant.
- ACoord coord = new ACoord(hv);
- for (int i=0; i<coord.hv[0][0].length; i++) {
- coord.hv[0][0][i] *= side;
- coord.hv[1][0][i] *= sign;
- }
-
- return coord;
- }
-
- /**
- * Returns the eta-phi geometry of a specific cell in this calorimeter part.
- * @param eta int eta index of cell
- * @param phi int phi index of cell
- * @param side int sign of the z coordinate of cell
- * @return ACoord polygon representing cell geometry
- */
- public ACoord getVPCell(int eta, int phi, int side) {
- double[][] hv = new double[2][];
- double etaMin = AParameterUtilities.eta((zMin+zMax)/2.f, rMax);
- double etaMax = AParameterUtilities.eta((zMin+zMax)/2.f, rMin);
- double phiMin = Math.toDegrees(phi0 + phi*deltaPhi);
- double phiMax = phiMin + Math.toDegrees(deltaPhi);
-
- side /= Math.abs(side);
-
- hv[0] = new double[] {side*etaMax, side*etaMin, side*etaMin, side*etaMax};
- hv[1] = new double[] { phiMax, phiMax, phiMin, phiMin};
-
- return new ACoord(hv);
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/geometry/AGeneralDetectors.java b/graphics/AtlantisJava/src/atlantis/geometry/AGeneralDetectors.java
deleted file mode 100755
index bb939996da5..00000000000
--- a/graphics/AtlantisJava/src/atlantis/geometry/AGeneralDetectors.java
+++ /dev/null
@@ -1,71 +0,0 @@
-package atlantis.geometry;
-
-import atlantis.parameters.APar;
-import java.util.*;
-
-/**
- * Used to store all detectors which are not part of the muon system
- * these may be of different types.
- */
-
-public final class AGeneralDetectors extends ADetectors {
-
- public AGeneralDetectors(List detectors) {
- super(filterGeneralDetectors(detectors));
- }
-
- private static ADetector[] filterGeneralDetectors(List detectors) {
-
- List tempDetectors=new ArrayList(detectors.size());
- Iterator it=detectors.iterator();
-
- while(it.hasNext()) {
- Object o=it.next();
- if((o instanceof ADetector)&&!(o instanceof ABoxDetector)&&!(o instanceof ATrapezoidDetector)) tempDetectors.add(o);
- }
- return (ADetector[])tempDetectors.toArray(new ADetector[tempDetectors.size()]);
- }
-
- private void makeDrawListYX() {
- int mode=parameterStore.get("YX", "Mode").getI();
- if(mode==0) {
- int num=0;
- for(int i=0; i<numData; ++i)
- if(det[i].getName().indexOf("FCAL")<0)
- listdl[num++]=i;
- numDraw=num;
- }
- else if(mode>8)
- {
- int num=0;
- for(int i=0; i<numData; ++i)
- if((mode==9 && det[i].getName().equals("FCAL EM"))
- ||(mode==10 && det[i].getName().equals("FCAL HAD 1"))
- ||(mode==11 && det[i].getName().equals("FCAL HAD 2"))
- ||(mode==12 && (det[i].getName().equals("LAr Endcap Presampler"))||det[i].getName().equals("LAr_EC_Presampler"))
- ||(mode>=13 && mode<= 15 && (det[i].getName().equals("LAr Outer Endcap") || det[i].getName().equals("LAr Inner Endcap")))
- ||(mode>=16 && mode<= 19 && det[i].getName().equals("HEC"))
- ||(parameterStore.get("YX", "DrawFCAL").getStatus() && mode==17 && det[i].getName().equals("FCAL EM"))
- ||(parameterStore.get("YX", "DrawFCAL").getStatus() && mode==18 && det[i].getName().equals("FCAL HAD 1"))
- ||(parameterStore.get("YX", "DrawFCAL").getStatus() && mode==19 && det[i].getName().equals("FCAL HAD 2"))
- ||(mode==20 && (det[i].getName().indexOf("LAr")>=0 || det[i].getName().indexOf("Endcap")>=0 || det[i].getName().indexOf("EC")>=0))
- ||(mode==21 && det[i].getName().equals("HEC"))
- ||(mode==22)&& det[i].getName().equals("Minimum Bias Trigger Scintillators"))
- listdl[num++]=i;
- numDraw=num;
- } else
- numDraw=0;
- }
-
- protected void makeDrawList(String projection) {
- if (projection.equals("YX") || projection.equals("FR"))
- makeDrawListYX();
- else {
- if(parameterStore.get(projection, "Mode").getI()==0)
- constructDefaultDrawList();
- else
- numDraw=0;
- }
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/geometry/AGeometryFromXMLReader.java b/graphics/AtlantisJava/src/atlantis/geometry/AGeometryFromXMLReader.java
deleted file mode 100755
index 8b7eb48bf48..00000000000
--- a/graphics/AtlantisJava/src/atlantis/geometry/AGeometryFromXMLReader.java
+++ /dev/null
@@ -1,286 +0,0 @@
-package atlantis.geometry;
-
-import java.io.InputStream;
-import java.util.List;
-import java.util.ArrayList;
-
-import atlantis.output.AExceptionHandler;
-import atlantis.utils.xml.AXMLErrorHandler;
-import atlantis.utils.AUtilities;
-import org.xml.sax.helpers.*;
-
-import javax.xml.parsers.SAXParser;
-import javax.xml.parsers.SAXParserFactory;
-import org.xml.sax.Attributes;
-
-
-class AGeometryFromXMLReader extends DefaultHandler {
-
- private static final boolean VALIDATION=false;
- private SAXParser parser;
-
- private static List<ADetector> detectors;
-
- public AGeometryFromXMLReader() {
- try {
- SAXParserFactory factory=SAXParserFactory.newInstance();
-
- factory.setValidating(true);
- factory.setNamespaceAware(true);
- parser=factory.newSAXParser();
- if(VALIDATION)
- parser.getXMLReader().setErrorHandler(new AXMLErrorHandler());
- } catch(Exception e) {
- AExceptionHandler.processException("Cannot create AGeometryFromXMLReader", e);
- }
- }
-
- protected List<ADetector> readDetectorGeometryFromXML(String fileName)
- {
- detectors = new ArrayList<ADetector>(2500);
- try
- {
- InputStream isGeom = AUtilities.getFileAsStream(fileName);
- parser.parse(isGeom, this);
- }
- catch(Exception e)
- {
- String msg = "Error when reading geometry file:\n" + e.getMessage();
- AExceptionHandler.processException(msg, e);
- }
-
- return detectors;
- }
-
- static private double calculatePhi(String name, double phi0, int phiIndex) {
- String technology = name.substring(0, 3);
- if (technology.equals("TGC")) {
- if (name.charAt(6) == 'E' && name.charAt(5) != '4')
- return Math.toRadians(phi0) + (phiIndex - 1) * Math.PI / 24.;
- else
- return Math.toRadians(phi0) + (phiIndex - 1) * Math.PI / 12.;
- } else {
- return Math.toRadians(phi0) + (phiIndex - 1) * Math.PI / 4.;
- }
- }
-
- // ContentHandler Implementation
-
- public void startElement(String namespaceURI, String localName, String qName, Attributes atts) {
- if(localName.equals("ABox")||localName.equals("ATBx")) {
- String name=atts.getValue("n");
- double zi=Double.parseDouble(atts.getValue("zi"));
- double zo=Double.parseDouble(atts.getValue("zo"));
- double ri=Double.parseDouble(atts.getValue("ri"));
- double ro=Double.parseDouble(atts.getValue("ro"));
- double w=Double.parseDouble(atts.getValue("w"));
- double dPhi=Double.parseDouble(atts.getValue("dphi"));
- double rpci=Double.parseDouble(atts.getValue("RPCi"));
- double rpco=Double.parseDouble(atts.getValue("RPCo"));
- double s=Double.parseDouble(atts.getValue("sh"));
- int stationEta=Integer.parseInt(atts.getValue("eta"));
- String[] phis=atts.getValue("phi").split(" ");
-
- if(localName.equals("ABox")) {
- for(int i=0; i<phis.length; ++i)
- for(int zSide=-1; zSide<=1; zSide+=2) {
- int stationPhi = Integer.parseInt(phis[i]);
- double phi = calculatePhi(name, dPhi, stationPhi);
- detectors.add(new ABoxDetector(name, zSide*zi, zSide*zo, ri+rpci, ro-rpco, phi, s, w,
- zSide*stationEta, stationPhi));
- if(rpci>0.)
- detectors.add(new ABoxDetector("RPC"+name.substring(3)+"_I", zSide*zi, zSide*zo, ri,
- ri+rpci, phi, s, w, zSide*stationEta, stationPhi));
- if(rpco>0.)
- detectors.add(new ABoxDetector("RPC"+name.substring(3)+"_O", zSide*zi, zSide*zo,
- ro-rpco, ro, phi, s, w, zSide*stationEta, stationPhi));
- }
- } else if(localName.equals("ATBx")) {
- double zis=Double.parseDouble(atts.getValue("zis"));
- double zos=Double.parseDouble(atts.getValue("zos"));
- double ws=Double.parseDouble(atts.getValue("ws"));
- double or=Double.parseDouble(atts.getValue("or"));
- for(int i=0; i<phis.length; ++i)
- for(int zSide=-1; zSide<=1; zSide+=2) {
- int stationPhi = Integer.parseInt(phis[i]);
- double phi = calculatePhi(name, dPhi, stationPhi);
- detectors.add(new ATBxDetector(name, zSide*zi, zSide*zo, ri+rpci, ro-rpco, phi, s, w,
- zSide*zis, zSide*zos, ws, or, zSide*stationEta, stationPhi));
- if(rpci>0.)
- detectors.add(new ATBxDetector("RPC"+name.substring(3)+"_I", zSide*zi, zSide*zo, ri,
- ri+rpci, phi, s, w, zSide*zis, zSide*zos, ws, or, zSide*stationEta, stationPhi));
- if(rpco>0.)
- detectors.add(new ATBxDetector("RPC"+name.substring(3)+"_O", zSide*zi, zSide*zo,
- ro-rpco, ro, phi, s, w, zSide*zis, zSide*zos, ws, or, zSide*stationEta, stationPhi));
- }
- }
-
- } else if(localName.equals("ATrd")) {
- String name=atts.getValue("n");
- double zi=Double.parseDouble(atts.getValue("zi"));
- double zo=Double.parseDouble(atts.getValue("zo"));
- double ri=Double.parseDouble(atts.getValue("ri"));
- double ro=Double.parseDouble(atts.getValue("ro"));
-
- double wi=Double.parseDouble(atts.getValue("wi"));
- double wo=Double.parseDouble(atts.getValue("wo"));
- double dPhi=Double.parseDouble(atts.getValue("dphi"));
- double alpha=Double.parseDouble(atts.getValue("a"));
- int stationEta=Integer.parseInt(atts.getValue("eta"));
- String[] phis=atts.getValue("phi").split(" ");
-
- for(int i=0; i<phis.length; ++i) {
- for(int zSide = -1; zSide <= 1; zSide += 2) {
- int stationPhi = Integer.parseInt(phis[i]);
- double phi = calculatePhi(name, dPhi, stationPhi);
- detectors.add(new ATrapezoidDetector(name, zSide*zi, zSide*zo, ri, ro, phi, wi, wo,
- alpha, zSide*stationEta, stationPhi));
- }
- }
- } else if(localName.equals("ABarrelCalorimeter")) {
- String name = atts.getValue("n");
- String color = atts.getValue("c");
- int sampling = Integer.parseInt(atts.getValue("sampling"));
- int region = Integer.parseInt(atts.getValue("region"));
- double rMin = Double.parseDouble(atts.getValue("rMin"));
- double rMax = Double.parseDouble(atts.getValue("rMax"));
- double zMin = Double.parseDouble(atts.getValue("zMin"));
- double zMax = Double.parseDouble(atts.getValue("zMax"));
- double eta0 = Double.parseDouble(atts.getValue("eta0"));
- double deta = Double.parseDouble(atts.getValue("deta"));
- int neta = Integer.parseInt(atts.getValue("neta"));
- int meta = Integer.parseInt(atts.getValue("meta"));
- double phi0 = Double.parseDouble(atts.getValue("phi0"));
- int nphi = Integer.parseInt(atts.getValue("nphi"));
- detectors.add(new ABarrelCalorimeterDetector(name, color, sampling, region, rMin, rMax,
- zMin, zMax, eta0, deta, neta, meta, phi0, nphi));
- } else if(localName.equals("AEndcapCalorimeter")) {
- String name = atts.getValue("n");
- String color = atts.getValue("c");
- int sampling = Integer.parseInt(atts.getValue("sampling"));
- int region = Integer.parseInt(atts.getValue("region"));
- double rMin = Double.parseDouble(atts.getValue("rMin"));
- double rMax = Double.parseDouble(atts.getValue("rMax"));
- double zMin = Double.parseDouble(atts.getValue("zMin"));
- double zMax = Double.parseDouble(atts.getValue("zMax"));
- double eta0 = Double.parseDouble(atts.getValue("eta0"));
- double deta = Double.parseDouble(atts.getValue("deta"));
- int neta = Integer.parseInt(atts.getValue("neta"));
- int meta = Integer.parseInt(atts.getValue("meta"));
- double phi0 = Double.parseDouble(atts.getValue("phi0"));
- int nphi = Integer.parseInt(atts.getValue("nphi"));
- detectors.add(new AEndcapCalorimeterDetector(name, color, sampling, region, rMin, rMax,
- zMin, zMax, eta0, deta, neta, meta, phi0, nphi));
- } else if(localName.equals("AEndcapCryostat")) {
- String name = atts.getValue("n");
- String color = atts.getValue("c");
- int sampling = Integer.parseInt(atts.getValue("sampling"));
- int region = Integer.parseInt(atts.getValue("region"));
- double rMin = Double.parseDouble(atts.getValue("rMin"));
- double rMax = Double.parseDouble(atts.getValue("rMax"));
- double zMin = Double.parseDouble(atts.getValue("zMin"));
- double zMax = Double.parseDouble(atts.getValue("zMax"));
- int neta = Integer.parseInt(atts.getValue("neta"));
- int nphi = Integer.parseInt(atts.getValue("nphi"));
- detectors.add(new AEndcapCryostatDetector(name, color, sampling, region, rMin, rMax, zMin,
- zMax, neta, nphi));
- } else if(localName.equals("AGapCalorimeter")) {
- String name = atts.getValue("n");
- String color = atts.getValue("c");
- int sampling = Integer.parseInt(atts.getValue("sampling"));
- int region = Integer.parseInt(atts.getValue("region"));
- double rMin = Double.parseDouble(atts.getValue("rMin"));
- double rMax = Double.parseDouble(atts.getValue("rMax"));
- double zMin = Double.parseDouble(atts.getValue("zMin"));
- double zMax = Double.parseDouble(atts.getValue("zMax"));
- int eta = Integer.parseInt(atts.getValue("eta"));
- double phi0 = Double.parseDouble(atts.getValue("phi0"));
- int nphi = Integer.parseInt(atts.getValue("nphi"));
- detectors.add(new AGapCalorimeterDetector(name, color, sampling, region, rMin, rMax,
- zMin, zMax, eta, phi0, nphi));
- } else if(localName.equals("ABarrelSiliconDetector")) {
- String name = atts.getValue("n");
- String color = atts.getValue("c");
- int layer = Integer.parseInt(atts.getValue("layer"));
- double length = Double.parseDouble(atts.getValue("length"));
- double width = Double.parseDouble(atts.getValue("width"));
- double thickness = Double.parseDouble(atts.getValue("thickness"));
- int nphi = Integer.parseInt(atts.getValue("nphi"));
- int nz = Integer.parseInt(atts.getValue("nz"));
- double tilt = Double.parseDouble(atts.getValue("tilt"));
- double r0 = Double.parseDouble(atts.getValue("r0"));
- double phi0 = Double.parseDouble(atts.getValue("phi0"));
- double zMin = Double.parseDouble(atts.getValue("zMin"));
- double zMax = Double.parseDouble(atts.getValue("zMax"));
- detectors.add(new ABarrelSiliconDetector(name, color, layer, length, width, thickness, nz,
- nphi, tilt, r0, phi0, zMin, zMax));
- } else if(localName.equals("AEndcapSiliconDetector")) {
- String name = atts.getValue("n");
- String color = atts.getValue("c");
- int layer = Integer.parseInt(atts.getValue("layer"));
- double length = Double.parseDouble(atts.getValue("length"));
- double width = Double.parseDouble(atts.getValue("width"));
- double thickness = Double.parseDouble(atts.getValue("thickness"));
- int nphi = Integer.parseInt(atts.getValue("nphi"));
- int nz = Integer.parseInt(atts.getValue("nz"));
- double rMin = Double.parseDouble(atts.getValue("rMin"));
- double rMax = Double.parseDouble(atts.getValue("rMax"));
- double phi0 = Double.parseDouble(atts.getValue("phi0"));
- double zMin = Double.parseDouble(atts.getValue("zMin"));
- double zMax = Double.parseDouble(atts.getValue("zMax"));
- detectors.add(new AEndcapSiliconDetector(name, color, layer, length, width, thickness, nz,
- nphi, rMin, rMax, phi0, zMin, zMax));
- } else if(localName.equals("ABarrelTRTDetector")) {
- String name = atts.getValue("n");
- String color = atts.getValue("c");
- int layer = Integer.parseInt(atts.getValue("layer"));
- int nphi = Integer.parseInt(atts.getValue("nphi"));
- double rMin = Double.parseDouble(atts.getValue("rMin"));
- double rMax = Double.parseDouble(atts.getValue("rMax"));
- double phiIn = Double.parseDouble(atts.getValue("phiIn"));
- double phiOut = Double.parseDouble(atts.getValue("phiOut"));
- double zMin = Double.parseDouble(atts.getValue("zMin"));
- double zMax = Double.parseDouble(atts.getValue("zMax"));
- detectors.add(new ABarrelTRTDetector(name, color, layer, nphi, rMin, rMax, phiIn, phiOut, zMin, zMax));
- } else if(localName.equals("AEndcapTRTDetector")) {
- String name = atts.getValue("n");
- String color = atts.getValue("c");
- int layer = Integer.parseInt(atts.getValue("layer"));
- int nphi = Integer.parseInt(atts.getValue("nphi"));
- double rMin = Double.parseDouble(atts.getValue("rMin"));
- double rMax = Double.parseDouble(atts.getValue("rMax"));
- double phi0 = Double.parseDouble(atts.getValue("phi0"));
- double zMin = Double.parseDouble(atts.getValue("zMin"));
- double zMax = Double.parseDouble(atts.getValue("zMax"));
- detectors.add(new AEndcapTRTDetector(name, color, layer, nphi, rMin, rMax, phi0, zMin, zMax));
- } else if(localName.equals("ADisc")) {
- String name=atts.getValue("n");
- String projection=atts.getValue("p");
- String color=atts.getValue("c");
- double rInner=Double.parseDouble(atts.getValue("rIn"));
- double rOuter=Double.parseDouble(atts.getValue("rOut"));
- int nInner=Integer.parseInt(atts.getValue("nIn"));
- int nOuter=Integer.parseInt(atts.getValue("nOut"));
-
- detectors.add(new ADiscDetector(name, projection, color, rInner, rOuter, nInner, nOuter));
- } else if(localName.equals("ARectangle")) {
- String name=atts.getValue("n");
- String projection=atts.getValue("p");
- String color=atts.getValue("c");
- double xMin=Double.parseDouble(atts.getValue("xMin"));
- double xMax=Double.parseDouble(atts.getValue("xMax"));
- double yMin=Double.parseDouble(atts.getValue("yMin"));
- double yMax=Double.parseDouble(atts.getValue("yMax"));
- boolean xReflect=atts.getValue("xR").equals("YES");
- boolean yReflect=atts.getValue("yR").equals("YES");
-
- detectors.add(new ARectangleDetector(name, projection, color, xMin, xMax, yMin, yMax));
- if(xReflect) detectors.add(new ARectangleDetector(name, projection, color, -xMin, -xMax, yMin,
- yMax));
- if(yReflect) detectors.add(new ARectangleDetector(name, projection, color, xMin, xMax, -yMin,
- -yMax));
- if(xReflect&&yReflect) detectors.add(new ARectangleDetector(name, projection, color, -xMin,
- -xMax, -yMin, -yMax));
- }
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/geometry/ARectangleDetector.java b/graphics/AtlantisJava/src/atlantis/geometry/ARectangleDetector.java
deleted file mode 100755
index 3af8f2f9b90..00000000000
--- a/graphics/AtlantisJava/src/atlantis/geometry/ARectangleDetector.java
+++ /dev/null
@@ -1,49 +0,0 @@
-package atlantis.geometry;
-
-import atlantis.graphics.ACoord;
-import atlantis.utils.AMath;
-
-public class ARectangleDetector extends ADetector
-{
- double xMin;
- double xMax;
- double yMin;
- double yMax;
-
- ARectangleDetector(String name, String projection, String color, double xMin, double xMax, double yMin, double yMax)
- {
- super(name, projection, color);
- this.xMin = xMin;
- this.xMax = xMax;
- this.yMin = yMin;
- this.yMax = yMax;
- }
-
- protected ACoord getRZUser()
- {
- return getUser("RZ");
- }
-
- protected ACoord getFZUser()
- {
- return getUser("FZ");
- }
-
- protected ACoord getXZUser()
- {
- return getUser("XZ");
- }
-
- protected ACoord getYZUser()
- {
- return getUser("YZ");
- }
-
- protected ACoord getUser(String proj)
- {
- if (!projection.equals(proj))
- return ACoord.NO_DATA;
- return new ACoord(AMath.xBox((xMin + xMax) / 2., (xMax - xMin) / 2.), AMath.yBox((yMin + yMax) / 2., (yMax - yMin) / 2.));
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/geometry/ATBxDetector.java b/graphics/AtlantisJava/src/atlantis/geometry/ATBxDetector.java
deleted file mode 100755
index e4c3dc8204e..00000000000
--- a/graphics/AtlantisJava/src/atlantis/geometry/ATBxDetector.java
+++ /dev/null
@@ -1,81 +0,0 @@
-package atlantis.geometry;
-
-import atlantis.graphics.ACoord;
-import atlantis.utils.AMath;
-
-/**
- * Special t shape Box used for MDT chambers near the feet.
- * These are only different in th FZ projection
- */
-
-public class ATBxDetector extends ABoxDetector {
-
- double zis;
- double zos;
- double ws;
- double or;
-
- public ATBxDetector(String name, double zMin, double zMax, double rMin,
- double rMax, double phi, double excl, double size, double zis, double zos,
- double ws, double or, int etaIndex, int phiIndex) {
- super(name, zMin, zMax, rMin, rMax, phi, excl, size, etaIndex, phiIndex);
- this.zis=zis;
- this.zos=zos;
- this.ws=ws;
- this.or=or;
- }
-
- protected ACoord getFZUser() {
- double[][] hv=new double[2][8];
- double cosPhi=Math.cos(phi);
- double sinPhi=Math.sin(phi);
- double d=size/2.;
- double r=rMin;
- double x=r*cosPhi-excl*sinPhi;
- double y=r*sinPhi+excl*cosPhi;
- double dsinPhi=d*sinPhi;
- double dcosPhi=d*cosPhi;
- double phi1=Math.toDegrees(Math.atan2(y-dcosPhi, x+dsinPhi));
- double phi2=Math.toDegrees(Math.atan2(y+dcosPhi, x-dsinPhi));
-
- if(phi1<0.) phi1+=360.;
- if(phi2<0.) phi2+=360.;
- if(phi1-phi2>180.) phi1-=360.;
- if(phi2-phi1>180.) phi2-=360.;
- double phiLower=Math.min(phi1, phi2);
- double phiUpper=Math.max(phi1, phi2);
- double phiMid=phiLower+ws/size*(phiUpper-phiLower);
- hv[0][0]=zMin;
- hv[0][1]=zMin;
- hv[0][2]=zis;
- hv[0][3]=zis;
- hv[0][4]=zos;
- hv[0][5]=zos;
- hv[0][6]=zMax;
- hv[0][7]=zMax;
- if(or>90.) {
- phiMid=phiLower+ws/size*(phiUpper-phiLower);
- hv[1][0]=phiUpper;
- hv[1][1]=phiMid;
- hv[1][2]=phiMid;
- hv[1][3]=phiLower;
- hv[1][4]=phiLower;
- hv[1][5]=phiMid;
- hv[1][6]=phiMid;
- hv[1][7]=phiUpper;
- } else {
- phiMid=phiUpper-ws/size*(phiUpper-phiLower);
- hv[1][0]=phiLower;
- hv[1][1]=phiMid;
- hv[1][2]=phiMid;
- hv[1][3]=phiUpper;
- hv[1][4]=phiUpper;
- hv[1][5]=phiMid;
- hv[1][6]=phiMid;
- hv[1][7]=phiLower;
- }
-
- return new ACoord(hv);
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/geometry/ATrapezoidDetector.java b/graphics/AtlantisJava/src/atlantis/geometry/ATrapezoidDetector.java
deleted file mode 100755
index 7850795a05c..00000000000
--- a/graphics/AtlantisJava/src/atlantis/geometry/ATrapezoidDetector.java
+++ /dev/null
@@ -1,211 +0,0 @@
-package atlantis.geometry;
-
-
-import atlantis.utils.AMath;
-import atlantis.parameters.*;
-import atlantis.graphics.ACoord;
-
-/**
- * In ATLAS Trapezoids are TGC and MDT in the endcap.
- */
-
-public class ATrapezoidDetector extends ADetector {
-
- double zMin;
- double zMax;
- double rMin;
- double rMax;
- double phi;
- double sizeS;
- double sizeL;
- double alpha;
- int stationEta;
- int stationPhi;
- int sector;
-
- public ATrapezoidDetector(String name, double zMin, double zMax, double rMin,
- double rMax, double phi, double sizeS, double sizeL,
- double alpha, int stationEta, int stationPhi) {
- super(name, " ", name.substring(0, 3));
- this.zMin = zMin;
- this.zMax = zMax;
- this.rMin = rMin;
- this.rMax = rMax;
- this.phi = phi;
- this.sizeS = sizeS;
- this.sizeL = sizeL;
- this.alpha = alpha;
- this.stationEta = stationEta;
- this.stationPhi = stationPhi;
- this.sector = ( (int) ( (phi + Math.PI / 16) / (Math.PI / 8))) % 16;
- }
-
- protected boolean equalsYX(ADetector o) {
- if (o instanceof ATrapezoidDetector) {
- ATrapezoidDetector that = (ATrapezoidDetector) o;
- return this.rMin == that.rMin &&
- this.rMax == that.rMax &&
- this.phi == that.phi &&
- this.sizeS == that.sizeS &&
- this.sizeL == that.sizeL;
- } else
- return false;
- }
-
- protected boolean equalsRZ(ADetector o) {
- if (o instanceof ATrapezoidDetector) {
- ATrapezoidDetector that = (ATrapezoidDetector) o;
- return this.rMin == that.rMin &&
- this.rMax == that.rMax &&
- this.zMin == that.zMin &&
- this.zMax == that.zMax &&
- this.alpha == that.alpha;
- }
- else
- return false;
- }
-
- protected ACoord getRZUser() {
- double phiMid = Math.toRadians(parameterStore.get("RZ", "Phi").getD());
- double phiDiff = Math.abs(phi - phiMid);
- double sign = -1.;
- if (phiDiff < Math.PI / 2. || phiDiff > 3 * Math.PI / 2.)
- sign = +1.;
- return getXZRZUser(sign);
- }
-
- protected ACoord getXZUser() {
- AParameter p=parameterStore.get("XZ", "Phi");
-
- // display muon data when phi is in the middle of a sector
- if(p.getD() % 22.5 < 1e-2) {
- int sect=(int)Math.round((p.getD() % 360.) / 22.5);
- if (sector == sect) {
- return getXZRZUser(1.);
- }
- else if (sector == sect - 8 || sector == sect + 8) {
- return getXZRZUser( -1.);
- }
- }
- return ACoord.NO_DATA;
- }
-
- protected ACoord getXZRZUser(double sign) {
- if (alpha == 0.) {
- return new ACoord(
- AMath.xBox( (zMin + zMax) / 2., (zMax - zMin) / 2.),
- AMath.yBox(sign * (rMin + rMax) / 2., sign * (rMax - rMin) / 2.));
- }
- else {
- double[][] hv = new double[2][];
- double zMid = (zMin + zMax) / 2.;
- double rMid = (rMin + rMax) / 2.;
- double dRho = (rMax - rMin) / 2;
- double dZ = (zMax - zMin) / 2;
- double sinAlpha = Math.sin(Math.toRadians(alpha));
- double cosAlpha = Math.cos(Math.toRadians(alpha));
-
- if (zMid * rMid > 0.)
- sinAlpha *= -1.;
-
- hv[0] = new double[] {
- zMid - sinAlpha * dRho - cosAlpha * dZ,
- zMid - sinAlpha * dRho + cosAlpha * dZ,
- zMid + sinAlpha * dRho + cosAlpha * dZ,
- zMid + sinAlpha * dRho - cosAlpha * dZ};
- hv[1] = new double[] {
- sign * (rMid + cosAlpha * dRho - sinAlpha * dZ),
- sign * (rMid + cosAlpha * dRho + sinAlpha * dZ),
- sign * (rMid - cosAlpha * dRho + sinAlpha * dZ),
- sign * (rMid - cosAlpha * dRho - sinAlpha * dZ)};
- return new ACoord(hv);
- }
- }
-
- protected ACoord getFZUser() {
- double deltaPhi = Math.max(Math.atan2(sizeL / 2., rMax),
- Math.atan2(sizeS / 2., rMin));
-
- if (alpha == 0.) {
- return new ACoord(
- AMath.xBox( (zMin + zMax) / 2., (zMax - zMin) / 2.),
- AMath.yBox( Math.toDegrees(phi), Math.toDegrees(deltaPhi) ));
- }
- else {
- double[][] hv = new double[2][];
- double zMid = (zMin + zMax) / 2.;
- double rMid = (rMin + rMax) / 2.;
- double dRho = (rMax - rMin) / 2;
- double dZ = (zMax - zMin) / 2;
- double sinAlpha = Math.sin(Math.toRadians(alpha));
- double cosAlpha = Math.cos(Math.toRadians(alpha));
-
- if (zMid * rMid > 0.)
- sinAlpha *= -1.;
-
- hv[0] = new double[] {
- zMid - sinAlpha * dRho - cosAlpha * dZ,
- zMid - sinAlpha * dRho - cosAlpha * dZ,
- zMid + sinAlpha * dRho + cosAlpha * dZ,
- zMid + sinAlpha * dRho + cosAlpha * dZ};
- hv[1] = new double[] {
- Math.toDegrees(phi - deltaPhi),
- Math.toDegrees(phi + deltaPhi),
- Math.toDegrees(phi + deltaPhi),
- Math.toDegrees(phi - deltaPhi)};
- return new ACoord(hv);
- }
- }
-
- protected ACoord getYXUser() {
- return getYXUser(0);
- }
-
- protected ACoord getFRUser() {
- return convertYXToFR(getYXUser(1));
- }
-
- private ACoord getYXUser(int flag) {
- int[] split= {12, 1, 12, 1};
- int numPoints=4;
- boolean splitIt=parameterStore.get("YX", "FishEye").getStatus()||parameterStore.get("YX", "Clock").getStatus()
- ||flag==1;
-
- if(splitIt)
- numPoints=26;
- double[] temp=new double[4];
- double[][] hv=new double[2][numPoints];
- double cosPhi=Math.cos(phi);
- double sinPhi=Math.sin(phi);
- double d=sizeS/2.;
- double r=rMin;
- double x=r*cosPhi;
- double y=r*sinPhi;
- double dx=d*sinPhi;
- double dy=d*cosPhi;
-
- hv[0][0]=x+dx;
- hv[1][0]=y-dy;
- hv[0][1]=x-dx;
- hv[1][1]=y+dy;
- r=rMax;
- x=r*cosPhi;
- y=r*sinPhi;
- d=sizeL/2.;
- dx=d*sinPhi;
- dy=d*cosPhi;
-
- hv[0][3]=x+dx;
- hv[1][3]=y-dy;
- hv[0][2]=x-dx;
- hv[1][2]=y+dy;
- if(splitIt)
- for(int j=0; j<2; ++j) {
- for(int k=0; k<4; ++k)
- temp[k]=hv[j][k];
- AMath.splitArrayIntoPieces(temp, hv[j], split);
- }
- return new ACoord(hv);
- }
-}
-
diff --git a/graphics/AtlantisJava/src/atlantis/geometry/ATrapezoidDetectors.java b/graphics/AtlantisJava/src/atlantis/geometry/ATrapezoidDetectors.java
deleted file mode 100755
index 943c34722fa..00000000000
--- a/graphics/AtlantisJava/src/atlantis/geometry/ATrapezoidDetectors.java
+++ /dev/null
@@ -1,163 +0,0 @@
-package atlantis.geometry;
-
-// not quite correct for CSC (alpha!=0.) in YX and FR
-
-import atlantis.parameters.AParameter;
-import atlantis.parameters.APar;
-import atlantis.utils.AMath;
-import java.util.*;
-
-/**
- * see comments in ABoxDetectors
- */
-
-public final class ATrapezoidDetectors extends ADetectors {
-
- private int numRZTypes;
- private int[] typeRZ;
- private int numYXTypes;
- private int[] typeYX;
-
- private ATrapezoidDetector[] trapezoid;
-
- public ATrapezoidDetectors(List detectors) {
- super(filterTrapezoidDetectors(detectors));
- trapezoid= new ATrapezoidDetector[det.length];
- for(int i=0;i<trapezoid.length;++i)
- trapezoid[i]=(ATrapezoidDetector)det[i];
-
-
- typeYX=new int[numData];
- for(int i=0; i<numData; ++i)
- typeYX[i]=-1;
-
- numYXTypes=0;
- for(int i=0; i<numData; ++i)
- if(typeYX[i]==-1) {
- typeYX[i]=numYXTypes;
- for(int j=i+1; j<numData; ++j)
- if(typeYX[j]==-1&&det[i].equalsYX(det[j]))
- typeYX[j]=numYXTypes;
- numYXTypes++;
- }
-
- typeRZ=new int[numData];
- for(int i=0; i<numData; ++i)
- typeRZ[i]=-1;
-
- numRZTypes=0;
- for(int i=0; i<numData; ++i)
- if(typeRZ[i]==-1) {
- typeRZ[i]=numRZTypes;
- for(int j=i+1; j<numData; ++j)
- if(typeRZ[j]==-1&&det[i].equalsRZ(det[j]))
- typeRZ[j]=numRZTypes;
- numRZTypes++;
- }
- }
-
- private static ADetector[] filterTrapezoidDetectors(List detectors) {
-
- List tempDetectors=new ArrayList(detectors.size());
- Iterator it=detectors.iterator();
-
- while(it.hasNext()) {
- Object o=it.next();
- if(o instanceof ATrapezoidDetector) tempDetectors.add(o);
- }
- return (ADetector[])tempDetectors.toArray(new ADetector[tempDetectors.size()]);
- }
-
- private void makeDrawListYX() {
- int mode=parameterStore.get("YX", "Mode").getI();
-
- if(mode==0)
- numDraw=0;
- else {
- int num=0;
- for(int i=0; i<numData; ++i) {
- double z=trapezoid[i].zMin;
- String name=det[i].getName().substring(4, 6);
- if(z>0.)
- if((mode==1&&name.equals("T4"))||(mode==2&&name.equals("T1"))
- ||(mode==3&&name.equals("T2"))||(mode==4&&name.equals("T3"))
- ||(mode==5&&(name.equals("EI")||name.equals("CS")))||(mode==6&&name.equals("EE"))
- ||(mode==7&&name.equals("EM"))||(mode==8&&name.equals("EO")))
- listdl[num++]=i;
- numDraw=num;
- }
- }
- }
-
- private void makeDrawListXZ() {
- AParameter p=parameterStore.get("XZ", "Phi");
-
- // display muon data when phi is in the middle of a sector
- if(p.getD() % 22.5 < 1e-2) {
- int sect=(int)Math.round((p.getD() % 360.) / 22.5);
- int num=0;
- for(int i=0; i<numData; i++) {
- int s=trapezoid[i].sector;
-
- if(s==sect||s==sect-8||s==sect+8) {
- listdl[num++]=i;
- }
- }
- numDraw=num;
- } else {
- numDraw=0;
- }
- }
-
- private void makeDrawListRZ() {
- // first make the draw list
- // for each type find out if it has both +ve and negative sign
- int[] pos=new int[typeRZ.length];
- int[] neg=new int[typeRZ.length];
- double phiMid=Math.toRadians(parameterStore.get("RZ", "Phi").getD());
-
- for(int i=0; i<numRZTypes; ++i)
- neg[i]=pos[i]=-1;
-
- for(int i=0; i<numData; ++i) {
- double phiDiff=Math.abs(trapezoid[i].phi-phiMid);
-
- if(phiDiff<Math.PI/2.||phiDiff>3*Math.PI/2.)
- pos[typeRZ[i]]=i;
- else
- neg[typeRZ[i]]=i;
- }
-
- int num=0;
- for(int i=0; i<numRZTypes; ++i) {
- if(pos[i]!=-1)
- listdl[num++]=pos[i];
- if(neg[i]!=-1)
- listdl[num++]=neg[i];
- }
- numDraw=num;
- }
-
- private void makeDrawListFZ() {
- if(parameterStore.get("FZ", "Mode").getI()==0) {
- constructDefaultDrawList();
- } else {
- numDraw=0;
- }
- }
-
- protected void makeDrawList(String projection) {
- if (projection.equals("YX") || projection.equals("FR") )
- makeDrawListYX();
- else if (projection.equals("FZ"))
- makeDrawListFZ();
- else if (projection.equals("RZ"))
- makeDrawListRZ();
- else if (projection.equals("XZ"))
- makeDrawListXZ();
- else
- numDraw=0;
- }
-
-}
-
diff --git a/graphics/AtlantisJava/src/atlantis/geometry/package.html b/graphics/AtlantisJava/src/atlantis/geometry/package.html
deleted file mode 100644
index 8c66987e1f1..00000000000
--- a/graphics/AtlantisJava/src/atlantis/geometry/package.html
+++ /dev/null
@@ -1,8 +0,0 @@
-<html>
-<head></head>
-<body>
-<p>Classes handling the detector description - ADetectorSystem
-contains the information used to draw detector components on the
-screen.</p>
-</body>
-</html>
diff --git a/graphics/AtlantisJava/src/atlantis/globals/AGlobals.java b/graphics/AtlantisJava/src/atlantis/globals/AGlobals.java
deleted file mode 100644
index ce6bce2447e..00000000000
--- a/graphics/AtlantisJava/src/atlantis/globals/AGlobals.java
+++ /dev/null
@@ -1,202 +0,0 @@
-/**
- *
- */
-package atlantis.globals;
-
-import java.awt.Frame;
-import java.awt.GraphicsEnvironment;
-
-
-/**
- * Provides access to Atlantis global variables in a slightly less bad way than
- * using the main atlantis.Atlantis class.
- *
- * @author waugh
- *
- */
-public class AGlobals {
- /** The singleton instance. No point in lazy instantiation. */
- private static AGlobals globals = new AGlobals();
-
- /** Get the singleton instance */
- public static AGlobals instance() {return globals;}
-
- /** Prevent instantiation except through singleton accessor. */
- private AGlobals() {}
-
- /** Normally the directory that Atlantis was loaded from. */
- private String homeDirectory;
-
- /** The version of AtlantisJava from Svn. */
- private String version;
-
- /** Flag for displaying HLTAutoKey data. */
- private boolean showHLTAutoKeys = false;
-
- /** Flag for using simple output, used by Minerva. */
- private int SIMPLE_OUTPUT = 0;
-
- /** This is the URL that is used as default for "Read events from URL". */
- private String LIVE_POINT_1_EVENTS_URL;
-
- /** The path to the user's configuration file. */
- private String userConfigFile;
-
- /** Whether to use OpenGL. */
- private boolean useOpenGL;
-
- /** Whether we are in demo mode. */
- private boolean demoMode;
-
- /** Component representing the GUI, if any. */
- private Frame guiFrame;
-
- /**
- * Set the Atlantis home directory, normally the directory that Atlantis was loaded from.
- *
- * @param homeDirectory the Atlantis home directory
- */
- public void setHomeDirectory(String homeDirectory) {
- this.homeDirectory = homeDirectory;
- }
-
- /**
- * Get the Atlantis home directory, normally the directory that Atlantis was loaded from.
- *
- * @return the Atlantis home directory
- */
- public String getHomeDirectory() {
- return homeDirectory;
- }
-
- /**
- * Get AtlantisJava version.
- * @return the Svn version, set in Atlantis.main()
- */
- public String getVersion() {
- return version;
- }
-
- /**
- * Set AtlantisJava version, called from Atlantis.main().
- * @param version the version to set
- */
- public void setVersion(String version) {
- this.version = version;
- }
-
- /**
- * Whether to show data with storeGateKey containing "HLTAutoKey".
- *
- * @return true to show, false to ignore
- */
- public boolean showHLTAutoKeys() {
- return showHLTAutoKeys;
- }
-
- /**
- * Whether to show data with storeGateKey containing "HLTAutoKey".
- *
- * @param showHLTAutoKeys true to show, false to ignore
- */
- public void setHLTAutoKeys(boolean showHLTAutoKeys) {
- this.showHLTAutoKeys = showHLTAutoKeys;
- }
-
- /**
- * @return the sIMPLE_OUTPUT
- */
- public int getSimpleOutput() {
- return SIMPLE_OUTPUT;
- }
-
- /**
- * @param sIMPLE_OUTPUT the sIMPLE_OUTPUT to set
- */
- public void setSimpleOutput(int sIMPLE_OUTPUT) {
- SIMPLE_OUTPUT = sIMPLE_OUTPUT;
- }
-
- /**
- * @return the URL for the Point 1 live events server
- */
- public String getLivePoint1EventsURL() {
- return LIVE_POINT_1_EVENTS_URL;
- }
-
- /**
- * @param livePoint1EventsURL the URL for the Point 1 live events server
- */
- public void setLivePoint1EventsURL(String livePoint1EventsURL) {
- LIVE_POINT_1_EVENTS_URL = livePoint1EventsURL;
- }
-
- /**
- * @param userConfigFilePath the path to the user's configuration file
- */
- public void setUserConfigFile(String userConfigFilePath) {
- this.userConfigFile = userConfigFilePath;
- }
-
- /**
- * @return the path to the user's configuration file
- */
- public String getUserConfigFile() {
- return this.userConfigFile;
- }
-
- /**
- * @return true if we should be using OpenGL
- */
- public boolean getUseOpenGL() {
- return useOpenGL;
- }
-
- /**
- * @param useOpenGL true to use OpenGL, false otherwise
- */
- public void setUseOpenGL(boolean useOpenGL) {
- this.useOpenGL = useOpenGL;
- }
-
- /**
- * Check whether we are in headless mode
- * @return true if headless (no graphics available)
- */
- public static boolean isAtlantisHeadless() {
- return GraphicsEnvironment.isHeadless();
- }
-
- /**
- * Whether the demo mode loop is running.
- * @return true if in demo mode
- */
- public boolean isDemoMode() {
- return demoMode;
- }
-
- /**
- * Signal whether the demo loop is running.
- * @param demoMode true when starting loop, false when stopping
- */
- public void setDemoMode(boolean demoMode) {
- this.demoMode = demoMode;
- }
-
- /**
- * For use as parent of dialogues, avoiding dependency on AGUI class itself.
- * @return the GUI frame
- */
- public Frame getGuiFrame() {
- return guiFrame;
- }
-
- /**
- * Set the GUI frame, called from AGUI when the instance is created.
- * @param guiFrame the GUI frame
- */
- public void setGuiFrame(Frame guiFrame) {
- this.guiFrame = guiFrame;
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/globals/package.html b/graphics/AtlantisJava/src/atlantis/globals/package.html
deleted file mode 100644
index e763965d1af..00000000000
--- a/graphics/AtlantisJava/src/atlantis/globals/package.html
+++ /dev/null
@@ -1,13 +0,0 @@
-<html>
-<head></head>
-<body>
-<p>Provides access to Atlantis global variables.</p>
-<p>This has been introduced as part of a process of breaking unwanted
- dependencies between packages. This package can contain any required
- global state so that other packages (atlantis.data etc.) do not need
- to depend on the "atlantis" package that contains the main Atlantis
- class, and which unavoidably depends on the rest of the
- packages.</p>
-<p>With luck this will prove not to be necessary in the long term!</p>
-</body>
-</html>
diff --git a/graphics/AtlantisJava/src/atlantis/graphics/AAbstractGraphics2D.java b/graphics/AtlantisJava/src/atlantis/graphics/AAbstractGraphics2D.java
deleted file mode 100755
index ddfeba3edb9..00000000000
--- a/graphics/AtlantisJava/src/atlantis/graphics/AAbstractGraphics2D.java
+++ /dev/null
@@ -1,315 +0,0 @@
-package atlantis.graphics;
-
-import java.awt.*;
-import java.awt.font.*;
-import java.awt.geom.*;
-import java.awt.image.*;
-import java.awt.image.renderable.*;
-
-/**
- * This graphics is used when nothing should really be drawn on the screen
- */
-
-public abstract class AAbstractGraphics2D extends Graphics2D {
-
- public void transform(AffineTransform z) {
- if(true) throw new RuntimeException();
- }
-
- public void fill(Shape z) {
- if(true) throw new RuntimeException();
- }
-
- public void draw(Shape z) {
- if(true) throw new RuntimeException();
- }
-
- public void drawImage(BufferedImage a, BufferedImageOp b, int c, int z) {
- if(true) throw new RuntimeException();
- }
-
- public boolean drawImage(Image a, AffineTransform b, ImageObserver z) {
- if(true) throw new RuntimeException();
- return false;
- }
-
- public void drawRenderedImage(RenderedImage a, AffineTransform z) {
- if(true) throw new RuntimeException();
- }
-
- public void drawRenderableImage(RenderableImage a, AffineTransform z) {
- if(true) throw new RuntimeException();
- }
-
- public void drawString(java.text.AttributedCharacterIterator a, float b, float z) {
- if(true) throw new RuntimeException();
- }
-
- public void drawString(String a, int b, int z) {
- if(true) throw new RuntimeException();
- }
-
- public void drawString(String a, float b, float z) {
- if(true) throw new RuntimeException();
- }
-
- public void drawString(java.text.AttributedCharacterIterator a, int b, int z) {
- if(true) throw new RuntimeException();
- }
-
- public void drawGlyphVector(GlyphVector a, float b, float z) {
- if(true) throw new RuntimeException();
- }
-
- public boolean hit(Rectangle a, Shape b, boolean z) {
- if(true) throw new RuntimeException();
- return false;
- }
-
- public GraphicsConfiguration getDeviceConfiguration() {
- if(true) throw new RuntimeException();
- return null;
- }
-
- public void setComposite(Composite z) {
- if(true) throw new RuntimeException();
- }
-
- public void setPaint(Paint z) {
- if(true) throw new RuntimeException();
- }
-
- public void setStroke(Stroke z) {
- if(true) throw new RuntimeException();
- }
-
- public void setRenderingHint(RenderingHints.Key a, Object z) {
- if(true) throw new RuntimeException();
- }
-
- public Object getRenderingHint(RenderingHints.Key z) {
- if(true) throw new RuntimeException();
- return null;
- }
-
- public void setRenderingHints(java.util.Map z) {
- if(true) throw new RuntimeException();
- }
-
- public void addRenderingHints(java.util.Map z) {
- if(true) throw new RuntimeException();
- }
-
- public RenderingHints getRenderingHints() {
- if(true) throw new RuntimeException();
- return null;
- }
-
- public void translate(double a, double z) {
- if(true) throw new RuntimeException();
- }
-
- public void translate(int a, int z) {
- if(true) throw new RuntimeException();
- }
-
- public void rotate(double a, double b, double z) {
- if(true) throw new RuntimeException();
- }
-
- public void rotate(double z) {
- if(true) throw new RuntimeException();
- }
-
- public void scale(double a, double z) {
- if(true) throw new RuntimeException();
- }
-
- public void shear(double a, double z) {
- if(true) throw new RuntimeException();
- }
-
- public void setTransform(AffineTransform z) {
- if(true) throw new RuntimeException();
- }
-
- public AffineTransform getTransform() {
- if(true) throw new RuntimeException();
- return null;
- }
-
- public Paint getPaint() {
- if(true) throw new RuntimeException();
- return null;
- }
-
- public Composite getComposite() {
- if(true) throw new RuntimeException();
- return null;
- }
-
- public void setBackground(Color z) {
- if(true) throw new RuntimeException();
- }
-
- public Color getBackground() {
- if(true) throw new RuntimeException();
- return null;
- }
-
- public Stroke getStroke() {
- if(true) throw new RuntimeException();
- return null;
- }
-
- public void clip(Shape z) {
- if(true) throw new RuntimeException();
- }
-
- public FontRenderContext getFontRenderContext() {
- if(true) throw new RuntimeException();
- return null;
- }
-
- public void setColor(Color z) {
- if(true) throw new RuntimeException();
- }
-
- public Graphics create() {
- if(true) throw new RuntimeException();
- return null;
- }
-
- public boolean drawImage(Image a, int b, int c, int d, int e, int f, int g, int h, int i, ImageObserver z) {
- if(true) throw new RuntimeException();
- return false;
- }
-
- public boolean drawImage(Image a, int b, int c, ImageObserver z) {
- if(true) throw new RuntimeException();
- return false;
- }
-
- public boolean drawImage(Image a, int b, int c, Color d, ImageObserver z) {
- if(true) throw new RuntimeException();
- return false;
- }
-
- public boolean drawImage(Image a, int b, int c, int d, int e, Color f, ImageObserver z) {
- if(true) throw new RuntimeException();
- return false;
- }
-
- public boolean drawImage(Image a, int b, int c, int d, int e, ImageObserver z) {
- if(true) throw new RuntimeException();
- return false;
- }
-
- public boolean drawImage(Image a, int b, int c, int d, int e, int f, int g, int h, int i, Color j, ImageObserver z) {
- if(true) throw new RuntimeException();
- return false;
- }
-
- public Color getColor() {
- if(true) throw new RuntimeException();
- return null;
- }
-
- public void fillRect(int a, int b, int c, int z) {
- if(true) throw new RuntimeException();
- }
-
- public void setPaintMode() {
- if(true) throw new RuntimeException();
- }
-
- public void setXORMode(Color z) {
- if(true) throw new RuntimeException();
- }
-
- public Font getFont() {
- if(true) throw new RuntimeException();
- return null;
- }
-
- public void setFont(Font z) {
- if(true) throw new RuntimeException();
- }
-
- public FontMetrics getFontMetrics(Font z) {
- if(true) throw new RuntimeException();
- return null;
- }
-
- public Rectangle getClipBounds() {
- if(true) throw new RuntimeException();
- return null;
- }
-
- public void clipRect(int a, int b, int c, int z) {
- if(true) throw new RuntimeException();
- }
-
- public void setClip(int a, int b, int c, int z) {
- if(true) throw new RuntimeException();
- }
-
- public void setClip(Shape z) {
- if(true) throw new RuntimeException();
- }
-
- public Shape getClip() {
- if(true) throw new RuntimeException();
- return null;
- }
-
- public void copyArea(int a, int b, int c, int d, int e, int z) {
- if(true) throw new RuntimeException();
- }
-
- // public void drawLine(int a,int b,int c,int z) { if (true) throw new RuntimeException(); }
- public void clearRect(int a, int b, int c, int z) {
- if(true) throw new RuntimeException();
- }
-
- public void drawRoundRect(int a, int b, int c, int d, int e, int z) {
- if(true) throw new RuntimeException();
- }
-
- public void fillRoundRect(int a, int b, int c, int d, int e, int z) {
- if(true) throw new RuntimeException();
- }
-
- public void drawOval(int a, int b, int c, int z) {
- if(true) throw new RuntimeException();
- }
-
- public void fillOval(int a, int b, int c, int z) {
- if(true) throw new RuntimeException();
- }
-
- public void drawArc(int a, int b, int c, int d, int e, int z) {
- if(true) throw new RuntimeException();
- }
-
- public void fillArc(int a, int b, int c, int d, int e, int z) {
- if(true) throw new RuntimeException();
- }
-
- public void drawPolyline(int[] a, int[] b, int z) {
- if(true) throw new RuntimeException();
- }
-
- public void drawPolygon(int[] a, int[] b, int z) {
- if(true) throw new RuntimeException();
- }
-
- public void fillPolygon(int[] a, int[] b, int z) {
- if(true) throw new RuntimeException();
- }
-
- public void dispose() {
- if(true) throw new RuntimeException();
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/graphics/AClipper.java b/graphics/AtlantisJava/src/atlantis/graphics/AClipper.java
deleted file mode 100755
index c525102c702..00000000000
--- a/graphics/AtlantisJava/src/atlantis/graphics/AClipper.java
+++ /dev/null
@@ -1,226 +0,0 @@
-package atlantis.graphics;
-
-import atlantis.utils.AClipPolygon;
-import atlantis.utils.APolygon;
-import java.awt.Rectangle;
-
-
-/**
- * Implement uniform treatment of Clipping for screen,
- * postscript and picking.
- */
-
-public class AClipper {
- double[] upper;
- double[] lower;
- double[][] x;
- boolean[][] below;
- boolean[][] within;
- boolean[][] above;
- double hLower;
- double hUpper;
- double vLower;
- double vUpper;
-
- public static final int NONE_WITHIN=0;
- public static final int MAYBE_WITHIN=1;
- public static final int ALL_WITHIN=2;
-
- public AClipper(double hLower, double hUpper, double vLower, double vUpper) {
-
- x=new double[2][2];
- upper=new double[2];
- lower=new double[2];
- below=new boolean[2][2];
- within=new boolean[2][2];
- above=new boolean[2][2];
- upper[0]=hUpper;
- upper[1]=vUpper;
- lower[0]=hLower;
- lower[1]=vLower;
- this.hUpper=hUpper;
- this.hLower=hLower;
- this.vUpper=vUpper;
- this.vLower=vLower;
- }
-
- public AClipper(Rectangle clipBounds) {
- this(clipBounds.getX(), clipBounds.getX()+clipBounds.getWidth(), clipBounds.getY(),
- clipBounds.getY()+clipBounds.getHeight());
- }
-
- public boolean isPointWithin(double h0, double v0) {
- return hLower<=h0&&h0<=hUpper&&vLower<=v0&&v0<=vUpper;
- }
-
- public boolean isLineWithin(double h0, double v0, double h1, double v1) {
- int roughCheck=fastWithin(h0, v0, h1, v1);
-
- if(roughCheck==0) return false;
- x[0][0]=h0;
- x[1][0]=v0;
- x[0][1]=h1;
- x[1][1]=v1;
- if(roughCheck==2) return true;
-
- update(0);
- update(1);
-
- outer:
- while(!lineFullyInside()) {
- if(lineFullyOutside()) return false;
-
- for(int i=0; i<2; i++)
- for(int point=0; point<2; point++) {
- if(!within[i][point]) {
- if(below[i][point]) {
- x[1-i][point]+=((x[1-i][1-point]-x[1-i][point])/(x[i][1-point]-x[i][point]))
- *(lower[i]-x[i][point]);
- x[i][point]=lower[i];
- } else if(above[i][point]) {
- x[1-i][point]+=((x[1-i][1-point]-x[1-i][point])/(x[i][1-point]-x[i][point]))
- *(upper[i]-x[i][point]);
- x[i][point]=upper[i];
- }
- update(point);
- continue outer;
- }
- }
- }
- // don't allow non-zero length line to be given zero length
- // by th clipper
- if((x[0][0]==x[0][1])&&(x[1][0]==x[1][1]))
- return false;
- return true;
- }
-
- private void update(int p) {
- for(int i=0; i<2; i++) {
- below[i][p]=false;
- within[i][p]=false;
- above[i][p]=false;
- if(x[i][p]<lower[i])
- below[i][p]=true;
- else if(x[i][p]>upper[i])
- above[i][p]=true;
- else
- within[i][p]=true;
- }
- }
-
- public boolean lineFullyInside() {
- boolean inside=true;
-
- for(int i=0; i<2; i++)
- for(int j=0; j<2; j++)
- inside=inside&&within[i][j];
- return inside;
- }
-
- public boolean lineFullyOutside() {
- boolean outside=false;
-
- for(int i=0; i<2; i++) {
- outside=outside||(below[i][0]&&below[i][1]);
- outside=outside||(above[i][0]&&above[i][1]);
- }
- return outside;
- }
-
- public double[][] getHV() {
- return x;
- }
-
- public double getH0() {
- return x[0][0];
- }
-
- public double getV0() {
- return x[1][0];
- }
-
- public double getH1() {
- return x[0][1];
- }
-
- public double getV1() {
- return x[1][1];
- }
-
- public int fastWithin(double h0, double v0, double h1, double v1) {
- if(h0<hLower&&h1<hLower) return NONE_WITHIN;
- if(h0>hUpper&&h1>hUpper) return NONE_WITHIN;
- if(v0<vLower&&v1<vLower) return NONE_WITHIN;
- if(v0>vUpper&&v1>vUpper) return NONE_WITHIN;
- if(hLower<=h0&&h0<=hUpper&&hLower<=h1&&h1<=hUpper&&vLower<=v0&&v0<=vUpper&&vLower<=v1
- &&v1<=vUpper) return ALL_WITHIN;
- return MAYBE_WITHIN;
- }
-
- public int fastWithin(double[] h, double[] v, int numPoints) {
- if(numPoints==0) return NONE_WITHIN;
- boolean firstWithin=hLower<=h[0]&&h[0]<=hUpper&&vLower<=v[0]&&v[0]<=vUpper;
-
- if(firstWithin) {
- for(int i=1; i<numPoints; ++i)
- if(!(hLower<=h[i]&&h[i]<=hUpper&&vLower<=v[i]&&v[i]<=vUpper)) return MAYBE_WITHIN;
- return ALL_WITHIN;
- } else {
- if(h[0]<hLower) {
- int num=1;
-
- for(int i=1; i<numPoints; ++i)
- if(h[i]<hLower)
- num++;
- else
- break;
- if(num==numPoints) return NONE_WITHIN;
- }
- if(h[0]>hUpper) {
- int num=1;
-
- for(int i=1; i<numPoints; ++i)
- if(h[i]>hUpper)
- num++;
- else
- break;
- if(num==numPoints) return NONE_WITHIN;
- }
- if(v[0]<vLower) {
- int num=1;
-
- for(int i=1; i<numPoints; ++i)
- if(v[i]<vLower)
- num++;
- else
- break;
- if(num==numPoints) return NONE_WITHIN;
- }
- if(v[0]>vUpper) {
- int num=1;
-
- for(int i=1; i<numPoints; ++i)
- if(v[i]>vUpper)
- num++;
- else
- break;
- if(num==numPoints) return NONE_WITHIN;
- }
- return MAYBE_WITHIN;
- }
- }
-
- public ACoord clipPolygon(double[] h, double[] v, int numPoints) {
- double[] clipH=new double[] { lower[0], upper[0], upper[0], lower[0] };
- double[] clipV=new double[] { lower[1], lower[1], upper[1], upper[1] };
- AClipPolygon clipArea=new AClipPolygon(clipH, clipV);
- APolygon badPolygon=new APolygon(h, v);
-
- badPolygon.clip(clipArea);
- h=badPolygon.getX();
- v=badPolygon.getY();
- return new ACoord(h, v);
- }
-
-}
-
diff --git a/graphics/AtlantisJava/src/atlantis/graphics/ACoord.java b/graphics/AtlantisJava/src/atlantis/graphics/ACoord.java
deleted file mode 100755
index 71aa2156379..00000000000
--- a/graphics/AtlantisJava/src/atlantis/graphics/ACoord.java
+++ /dev/null
@@ -1,355 +0,0 @@
-package atlantis.graphics;
-
-import atlantis.parameters.APar;
-import atlantis.utils.*;
-
-/**
- * Used to store a collection of User or display 2D coordinates of hits or tracks
- * together with their indices in the corresponding AData
- * (used for picking, colors etc.). N.B. the storage model is different for
- * SYMBOLS/LINES(with two end points) than for POLYLINES/POLYGONS for
- * efficiency reasons. Transformations between user/display coordinaates are based
- * on ACoords.
- */
-public class ACoord {
-
- private static ALogger logger = ALogger.getLogger(ACoord.class);
-
- public double[][][] hv;
- public int[] index;
- protected int type=POLYGONS;
- public ADrawable source;
-
- final static public int SYMBOLS=1;
- final static public int LINES=2;
- final static public int POLYLINES=3;
- final static public int POLYGONS=4;
- final static public int DOTTED_POLYGONS=5; // for drawing missing ET in V-Plot
- final static public int SMOOTH_POLYLINES=6;
- final static public int TRANSPARENT_POLYGONS=7;
-
- final static public ACoord NO_DATA=new ACoord(new double[2][0][0], new int[0]);
- final static public ACoord NO_POLYGONS=new ACoord(new double[2][0][0], new int[0]);
- final static public ACoord NO_POLYLINES=new ACoord(new double[2][0][0], new int[0]);
- final static public ACoord[] NO_HISTOGRAMS=new ACoord[0];
-
- protected static APar parameterStore = APar.instance();
-
- public ACoord(double h, double v, int index) {
- this(h, v);
- this.index=new int[] {index};
- }
-
- public ACoord(double h, double v) {
- this.hv=new double[2][1][1];
- this.hv[0][0][0]=h;
- this.hv[1][0][0]=v;
- this.index=null;
- this.type=SYMBOLS;
- }
-
- public ACoord(double[] h, double[] v) {
- this.hv=new double[2][1][];
- this.hv[0][0]=h;
- this.hv[1][0]=v;
- this.index=new int[] {0};
- }
-
- private ACoord(double[][] hv, int[] index) {
- if(hv.length!=2) throw new IllegalArgumentException("hv.length="+hv.length);
- this.hv = new double[2][1][0];
- this.hv[0][0]=hv[0];
- this.hv[1][0]=hv[1];
- this.index=index;
- }
-
- private ACoord(double[][] hv, int[] index, ADrawable source) {
- this(hv, index);
- this.source=source;
- }
-
- public ACoord(double[][] hv) {
- if(hv.length!=2) throw new IllegalArgumentException("hv.length="+hv.length);
- this.hv = new double[2][1][];
- this.hv[0][0]=hv[0];
- this.hv[1][0]=hv[1];
- this.index=null;
- }
-
- public ACoord(double[][][] hv, int[] index) {
- if(hv.length!=2) throw new IllegalArgumentException("hv.length="+hv.length);
- this.hv=hv;
- this.index=index;
- }
-
- public ACoord(double[][][] hv, int[] index, ADrawable source) {
- this(hv, index);
- this.source=source;
- }
-
- public ACoord(double[][][] hv) {
- if(hv.length!=2) throw new IllegalArgumentException("hv.length="+hv.length);
- this.hv=hv;
- this.index=null;
- }
-
- private ACoord(ACoord a) {
- this.hv=new double[a.hv.length][][];
- for(int i=0; i<a.hv.length; i++) {
- this.hv[i]=new double[a.hv[i].length][];
- for(int j=0; j<a.hv[i].length; j++) {
- this.hv[i][j]=new double[a.hv[i][j].length];
- for(int k=0; k<a.hv[i][j].length; k++)
- this.hv[i][j][k]=a.hv[i][j][k];
- }
- }
- this.index=new int[a.index.length];
- for(int i=0; i<a.index.length; i++)
- this.index[i]=a.index[i];
- this.type=a.type;
- this.source=a.source;
- }
-
- public ACoord(double[][] hv, int[] index, ADrawable source, int type) {
- this(hv, index, source);
- this.type=type;
- }
-
- public ACoord(double[][][] hv, int[] index, ADrawable source, int type) {
- this(hv, index, source);
- this.type=type;
- }
-
- public ACoord(double[] h, double[] v, int[] index, ADrawable source) {
- if(h.length!=v.length)
- throw new IllegalArgumentException("h.length "+h.length+" !=v.length "+v.length);
- if(h.length!=index.length)
- throw new IllegalArgumentException("h.length "+h.length+" !=index.length "+index.length);
- this.hv=new double[2][1][];
- this.hv[0][0]=h;
- this.hv[1][0]=v;
- this.index=index;
- this.type=SYMBOLS;
- this.source=source;
- }
-
- public void print() {
- for(int j=0; j<hv[0].length; j++) {
- logger.debug(" index = "+index[j]);
- for(int i=0; i<2; i++) {
- if(i==0)
- logger.debug("h ");
- else
- logger.debug("v ");
- for(int k=0; k<hv[0][j].length; k++)
- logger.debug((float)hv[i][j][k]+"\t");
- }
- }
- }
-
- // careful this does not make an independent copy
- public ACoord(ACoord a, ACoord b) {
- this.hv=new double[2][a.hv[0].length+b.hv[0].length][];
- this.index=new int[a.hv[0].length+b.hv[0].length];
- this.type=a.type;
- this.source=a.source;
-
- for(int i=0; i<2; i++) {
- int num=0;
-
- for(int j=0; j<a.hv[i].length; j++) {
- this.hv[i][num]=a.hv[i][j];
- this.index[num]=a.index[j];
- num++;
- }
- for(int j=0; j<b.hv[i].length; j++) {
- this.hv[i][num]=b.hv[i][j];
- this.index[num]=b.index[j];
- num++;
- }
- }
- }
-
- public ACoord convertYXToFR() {
- if(type==SYMBOLS||type==LINES) {
- for(int j=0; j<hv[0][0].length; j++) {
- double phiLast=0.;
-
- for(int i=0; i<hv[0].length; i++) {
- double xx=hv[0][i][j];
- double yy=hv[1][i][j];
- double rho=Math.sqrt(xx*xx+yy*yy);
- double phi=Math.toDegrees(Math.atan2(yy, xx));
-
- if(phi<0.)
- phi+=360.;
- if(i>0) {
- if(phi-phiLast>180.) phi-=360.;
- if(phi-phiLast<-180.) phi+=360.;
- }
- hv[0][i][j]=rho;
- hv[1][i][j]=phi;
- phiLast=phi;
- }
- }
-
- } else {
- for(int i=0; i<hv[0].length; i++) {
- double phiLast=0.;
-
- for(int j=0; j<hv[0][i].length; j++) {
- double xx=hv[0][i][j];
- double yy=hv[1][i][j];
- double rho=Math.sqrt(xx*xx+yy*yy);
- double phi=Math.toDegrees(Math.atan2(yy, xx));
-
- if(phi<0.)
- phi+=360.;
- if(j>0) {
- if(phi-phiLast>180.) phi-=360.;
- if(phi-phiLast<-180.) phi+=360.;
- }
- hv[0][i][j]=rho;
- hv[1][i][j]=phi;
- phiLast=phi;
- }
- }
- }
- return this;
- }
-
- public ACoord includePhiWrapAround(String projectionName) {
- // assumes phi is always the v coordinaate
- int numFrames=parameterStore.get(projectionName, "FramesCount").getI();
- int initialFrame=parameterStore.get(projectionName, "InitialFrame").getI();
-
- if(type==SYMBOLS||type==LINES) {
- int numPoints=hv[1].length;
- int numInitialData=hv[1][0].length;
-
- double[][][] hvtemp=new double[2][numPoints][numFrames*numInitialData];
- int[] indextemp=new int[numFrames*numInitialData];
-
- int num=0;
-
- for(int f=initialFrame; f<initialFrame+numFrames; f++) {
- for(int i=0; i<numInitialData; i++) {
- if(index!=null) indextemp[num]=index[i];
- for(int j=0; j<numPoints; ++j) {
- hvtemp[0][j][num]=this.hv[0][j][i];
- hvtemp[1][j][num]=this.hv[1][j][i]+f*360.;
- }
- num++;
- }
- }
- hv=hvtemp;
- if (index!=null) index=indextemp;
- } else {
- int numInitialData=hv[1].length;
- double[][][] hvtemp=new double[2][numFrames*numInitialData][];
- int[] indextemp=new int[numFrames*numInitialData];
-
- int num=0;
-
- for(int f=initialFrame; f<initialFrame+numFrames; f++) {
- for(int i=0; i<numInitialData; i++) {
- int numPoints=hv[1][i].length;
-
- hvtemp[0][num]=new double[numPoints];
- hvtemp[1][num]=new double[numPoints];
- for(int j=0; j<numPoints; j++) {
- hvtemp[0][num][j]=this.hv[0][i][j];
- hvtemp[1][num][j]=this.hv[1][i][j]+f*360.;
- }
- if (index!=null) indextemp[num]=index[i];
- num++;
- }
- }
- hv=hvtemp;
- if (index!=null) index=indextemp;
- }
- return this;
- }
-
- /**
- * used in ATLAS context for the TRT
- * Force data to be drawn as symbols if
- * forceSymbols=true
- * or
- * all lines are smaller than minSize
- */
- public ACoord toSymbols(boolean forceSymbols, int minSize) {
- if(type==LINES) {
- double dmax2=0.;
-
- for(int i=0; i<hv[0][0].length; i++) {
- double dh=(hv[0][0][i]-hv[0][1][i]);
- double dv=(hv[1][0][i]-hv[1][1][i]);
- double d=dh*dh+dv*dv;
-
- if(d>dmax2) dmax2=d;
- }
- if(Math.sqrt(dmax2)<minSize||forceSymbols) {
- type=SYMBOLS;
- for(int i=0; i<hv[0][0].length; i++) {
- hv[0][0][i]=(hv[0][0][i]+hv[0][1][i])/2.;
- hv[1][0][i]=(hv[1][0][i]+hv[1][1][i])/2.;
- }
- }
- } else if(type==POLYLINES||type==POLYGONS||type==TRANSPARENT_POLYGONS) {
- double dmax2=0.;
-
- for(int j=0; j<hv[0].length; j++) {
- for(int i=0; i<hv[0][j].length; i++) {
- double dh=(hv[0][j][0]-hv[0][j][i]);
- double dv=(hv[1][j][0]-hv[1][j][i]);
- double d=dh*dh+dv*dv;
-
- if(d>dmax2) dmax2=d;
- }
- }
-
- if(Math.sqrt(dmax2)<minSize||forceSymbols) {
- type=SYMBOLS;
- double[][][] hvnew=new double[2][1][hv[0].length];
-
- for(int j=0; j<hv[0].length; j++) {
- double h=0.;
- double v=0.;
-
- for(int i=0; i<hv[0][j].length; i++) {
- h+=hv[0][j][i];
- v+=hv[1][j][i];
- }
- h/=hv[0][j].length;
- v/=hv[0][j].length;
- hvnew[0][0][j]=h;
- hvnew[1][0][j]=v;
- }
- hv=hvnew;
- }
- }
- return this;
- }
-
- public ACoord mirrorH () {
- ACoord coord = new ACoord(this);
- for(int i=0; i<coord.hv[0].length; i++) {
- for(int j=0; j<coord.hv[0][i].length; j++) {
- coord.hv[0][i][j] *= -1;
- }
- }
- return coord;
- }
-
- public ACoord mirrorV () {
- ACoord coord = new ACoord(this);
- for(int i=0; i<coord.hv[1].length; i++) {
- for(int j=0; j<coord.hv[1][i].length; j++) {
- coord.hv[1][i][j] *= -1;
- }
- }
- return coord;
- }
-}
-
diff --git a/graphics/AtlantisJava/src/atlantis/graphics/ACursorFactory.java b/graphics/AtlantisJava/src/atlantis/graphics/ACursorFactory.java
deleted file mode 100755
index 133abd8f8d4..00000000000
--- a/graphics/AtlantisJava/src/atlantis/graphics/ACursorFactory.java
+++ /dev/null
@@ -1,227 +0,0 @@
-package atlantis.graphics;
-
-
-import java.awt.Toolkit;
-import java.awt.Dimension;
-import java.awt.Cursor;
-import java.awt.Point;
-import java.awt.Image;
-import java.awt.dnd.DragSource;
-
-import atlantis.globals.AGlobals;
-import atlantis.utils.ALogger;
-import atlantis.utils.AUtilities;
-
-/**
- * Singleton class factory for producing cursors.
- * Due to difference in the default cursors provided by the different OSs,
- * all cursors are generated by Atlantis itself.
- */
-
-public class ACursorFactory {
-
- private static ALogger logger = ALogger.getLogger(ACursorFactory.class);
-
- /** singleton class, pointer to this instance */
- private static ACursorFactory instance;
-
- /** Cursor size string, either "64x64" or "32x32" */
- private String cursorSize;
-
- /** Cursor color string, either "bw" or "" */
- private String bAndW="";
-
- /**
- * @return true if if system supports custom cursors
- */
- public boolean getCustomCursors() { return customCursors; }
- private final boolean customCursors;
-
- /**
- * @return the default Cursor
- */
- public Cursor getDefaultCursor() { return defaultCursor; }
- private Cursor defaultCursor = null;
-
- /** Drag-and-drop valid cursor */
- private Cursor dragValidCursor=null;
- public Cursor getDragValidCursor() { return dragValidCursor; }
- /** Drag-and-drop invalid cursor */
- private Cursor dragInvalidCursor=null;
- public Cursor getDragInvalidCursor() { return dragValidCursor; }
-
- /** Zoom cursor */
- public Cursor getZoomCursor() { return zoomCursor; }
- private Cursor zoomCursor=null;
- /** Move cursor */
- public Cursor getMoveCursor() { return moveCursor; }
- private Cursor moveCursor=null;
- /** Rotate cursor */
- public Cursor getRotateCursor() { return rotateCursor; }
- private Cursor rotateCursor=null;
-
- /** Pick cursor */
- public Cursor getPickCursor() { return pickCursor; }
- private Cursor pickCursor=null;
- /** Rectangular selection cursor */
- public Cursor getRectSelectCursor() { return rectSelectCursor; }
- private Cursor rectSelectCursor=null;
-
- /** Syncro cursor */
- public Cursor getSyncCursor() { return syncCursor; }
- private Cursor syncCursor=null;
- /** FishEye cursor */
- public Cursor getFishEyeCursor() { return fishEyeCursor; }
- private Cursor fishEyeCursor=null;
-
- /** FishEye symbol also needed as a FishEye on/off indicator */
- public Image getFishEyeIndicator() { return fishEyeIndicator; }
- private Image fishEyeIndicator=null;
-
- /** ATLAS logo can be printed on canvas */
- public Image getAtlasLogo() { return atlasLogo; }
- private Image atlasLogo=null;
-
- /**
- * Public singleton instantiation accessor
- * @return the singleton instance
- */
- public static ACursorFactory getInstance() {
-
- //Check if we already have an instance
- if (instance == null) instance = new ACursorFactory();
-
- //Return the singleton instance
- return instance;
- }
-
-
- /** Constructor */
- private ACursorFactory(){
-
- logger.debug("Creating cursor and image factory ...");
- String FILE_SEPAR = System.getProperty("file.separator");
- String homeDirectory = AGlobals.instance().getHomeDirectory();
-
- //Provide images and indicators even in headless mode
- //Fisheye
- String path = homeDirectory + "img" + FILE_SEPAR +
- "cursor_fisheye_"+bAndW+"32x32.gif";
- fishEyeIndicator = AUtilities.getFileAsImageIcon(path).getImage();
-
- //Atlas logo
- path = homeDirectory + "img" + FILE_SEPAR +
- "atlas_logo_big.png";
- atlasLogo = AUtilities.getFileAsImageIcon(path).getImage();
-
-
- //Don't create any cursors in headless mode
- if (AGlobals.isAtlantisHeadless()){
- //Custom cursors not supported on this platform
- customCursors=false;
- return;
- }
-
- //Check for best cursor size on this system - trying largest
- Dimension bestCursorSize=Toolkit.getDefaultToolkit().getBestCursorSize(64,64);
-
- //Check if custom cursors are allowed
- if (bestCursorSize.width > 0){
-
- customCursors=true;
-
- //We only support 32x32 and 64x64 cursors. Check which one we are closer to
- if (bestCursorSize.width < 48) cursorSize="32x32";
- else cursorSize="64x64";
-
- //Check if we have enough colours for greyscale cursors
- if (Toolkit.getDefaultToolkit().getMaximumCursorColors() < 255)
- bAndW="bw_";
- else bAndW="";
-
- logger.info("Using "+bAndW+cursorSize+" cursors");
-
- //Now create the individual cursors
- Toolkit tools = Toolkit.getDefaultToolkit();
-
-
- //Drag and drop cursors -----------------------------------------------
-
- //Valid DnD
- path = homeDirectory + "img" + FILE_SEPAR +
- "cursor_DnD_valid_" + cursorSize+ ".gif";
- Image validDnDImg = AUtilities.getFileAsImageIcon(path).getImage();
-
- dragValidCursor=tools.createCustomCursor(validDnDImg, new Point(1, 1),"ValidDnD");
-
- //Invalid Dnd
- path = homeDirectory + "img" + FILE_SEPAR +
- "cursor_DnD_invalid_" + cursorSize + ".gif";
- Image invalidDnDImg = AUtilities.getFileAsImageIcon(path).getImage();
- dragInvalidCursor=tools.createCustomCursor(invalidDnDImg,new Point(9, 9),"InvalidDnD");
-
- //Zoom, move and rotate cursors -----------------------------------------------
- //Zoom
- path = homeDirectory + "img" + FILE_SEPAR +
- "cursor_zoom_"+bAndW+cursorSize+".gif";
- Image zoomImg = AUtilities.getFileAsImageIcon(path).getImage();
- zoomCursor=tools.createCustomCursor(zoomImg, new Point(9, 9),"Zoom");
-
- //Move
- path = homeDirectory + "img" + FILE_SEPAR +
- "cursor_move_" + cursorSize+".gif";
- Image moveImg = AUtilities.getFileAsImageIcon(path).getImage();
- moveCursor=tools.createCustomCursor(moveImg,new Point(10, 10),"Move");
-
- //Rotate
- path = homeDirectory + "img" + FILE_SEPAR +
- "cursor_rotate_"+bAndW+cursorSize+".gif";
- Image rotateImg = AUtilities.getFileAsImageIcon(path).getImage();
- rotateCursor=tools.createCustomCursor(rotateImg,new Point(11, 11),"Rotate");
-
- //Pick and RectSelect cursors -----------------------------------------------
- //Pick
- path = homeDirectory + "img" + FILE_SEPAR +
- "cursor_pick_"+cursorSize+".gif";
- Image pickImg = AUtilities.getFileAsImageIcon(path).getImage();
- pickCursor=tools.createCustomCursor(pickImg, new Point(6, 1),"Pick");
-
- //Rectangle select
- path = homeDirectory + "img" + FILE_SEPAR +
- "cursor_rectsel_"+cursorSize+".gif";
- Image rectSelectImg = AUtilities.getFileAsImageIcon(path).getImage();
- rectSelectCursor=tools.createCustomCursor(rectSelectImg,new Point(12, 12),"RectSelect");
-
- //Syncro and FishEye cursors -----------------------------------------------------
- //Sync
- path = homeDirectory + "img" + FILE_SEPAR +
- "cursor_sync_" + cursorSize + ".gif";
- Image syncImg = AUtilities.getFileAsImageIcon(path).getImage();
- syncCursor=tools.createCustomCursor(syncImg, new Point(10, 10),"Sync");
-
- //FishEye
- path = homeDirectory + "img" + FILE_SEPAR +
- "cursor_fisheye_"+bAndW+cursorSize+".gif";
- Image fishEyeImg = AUtilities.getFileAsImageIcon(path).getImage();
- fishEyeCursor=tools.createCustomCursor(fishEyeImg, new Point(1, 8),"FishEye");
-
- } else customCursors=false;
-
-
- //Now check for any cursors that have not been set yet
- //And set them to system defaults
- if (defaultCursor == null) defaultCursor = new Cursor(Cursor.DEFAULT_CURSOR);
-
- if (dragValidCursor == null) dragValidCursor = DragSource.DefaultMoveDrop;
- if (dragInvalidCursor == null) dragInvalidCursor = DragSource.DefaultMoveNoDrop;
-
- if (zoomCursor == null) zoomCursor = new Cursor(Cursor.DEFAULT_CURSOR);
- if (moveCursor == null) moveCursor = new Cursor(Cursor.MOVE_CURSOR);
- if (rotateCursor == null) rotateCursor = new Cursor(Cursor.DEFAULT_CURSOR);
-
- if (pickCursor == null) pickCursor = new Cursor(Cursor.HAND_CURSOR);
- if (rectSelectCursor == null) rectSelectCursor = new Cursor(Cursor.NW_RESIZE_CURSOR);
- if (syncCursor == null) syncCursor = new Cursor(Cursor.CROSSHAIR_CURSOR);
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/graphics/ADrawParameters.java b/graphics/AtlantisJava/src/atlantis/graphics/ADrawParameters.java
deleted file mode 100755
index 214b6e05b45..00000000000
--- a/graphics/AtlantisJava/src/atlantis/graphics/ADrawParameters.java
+++ /dev/null
@@ -1,98 +0,0 @@
-package atlantis.graphics;
-
-import atlantis.graphics.colormap.AColorMap;
-
-import java.awt.Color;
-
-/**
- * Contains graphics attributes of a collection of data
- */
-public class ADrawParameters {
-
- boolean draw;
- Color color;
- int size;
- int minSize=0;
- boolean forceSymbols=false;
- int lineWidth;
- int frameWidth;
- int symbol;
- int drawOrFill=AGraphics.DRAW;
-
- public ADrawParameters(boolean draw, int color, int size, int lineWidth, int frameWidth, int symbol) {
- Color[] colorMap=AColorMap.getColors();
-
- this.draw=draw;
- if(color!=-1)
- this.color=colorMap[color];
- else
- this.color=null;
- this.size=size;
- this.lineWidth=lineWidth;
- this.frameWidth=frameWidth;
- this.symbol=symbol;
- }
-
- public ADrawParameters(boolean draw, int color, int size, int lineWidth, int frameWidth, int symbol,
- boolean forceSymbols, int minSize, int drawOrFill) {
- Color[] colorMap=AColorMap.getColors();
-
- this.draw=draw;
- if(color!=-1)
- this.color=colorMap[color];
- else
- this.color=null;
- this.size=size;
- this.lineWidth=lineWidth;
- this.frameWidth=frameWidth;
- this.symbol=symbol;
- this.forceSymbols=forceSymbols;
- this.minSize=minSize;
- this.drawOrFill=drawOrFill;
- }
-
- public ADrawParameters(boolean draw, Color color, int size, int lineWidth, int frameWidth, int symbol, int drawOrFill) {
- this.draw=draw;
- this.color=color;
- this.size=size;
- this.lineWidth=lineWidth;
- this.frameWidth=frameWidth;
- this.symbol=symbol;
- this.drawOrFill=drawOrFill;
- }
-
- public void setColor(int color) {
- Color[] colorMap=AColorMap.getColors();
-
- this.color=colorMap[color];
- }
-
- public void setFrameWidth(int width) {
- this.frameWidth=width;
- }
-
- public void setSize(int size) {
- this.size=size;
- }
-
- public boolean toBeDrawn() {
- return draw;
- }
-
- public int getSize() {
- return size;
- }
-
- public int getMinSize() {
- return minSize;
- }
-
- public boolean getForceSymbols() {
- return forceSymbols;
- }
-
- public int getDrawOrFill() {
- return drawOrFill;
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/graphics/ADrawable.java b/graphics/AtlantisJava/src/atlantis/graphics/ADrawable.java
deleted file mode 100755
index bf36d13b60e..00000000000
--- a/graphics/AtlantisJava/src/atlantis/graphics/ADrawable.java
+++ /dev/null
@@ -1,24 +0,0 @@
-package atlantis.graphics;
-
-
-import atlantis.canvas.AWindow;
-import atlantis.projection.AProjection2D;
-
-
-public interface ADrawable {
- void draw(AWindow window, AGraphics ag, AProjection2D projection);
- int[] getColor(int[] dl);
- int[] getType(int[] dl);
- int getNumTypes();
-
- /**
- * The data are normally drawn in two layers
- * (layer=0 is for frames)
- * (layer=1 is the data)
- * The data may be of more than 1 type which are drawn in sequence
- * e.g. type=0 noise
- * type=1 others
- */
- ADrawParameters getDrawParameters(int layer, int type);
-}
-
diff --git a/graphics/AtlantisJava/src/atlantis/graphics/ADrawnGraphics2D.java b/graphics/AtlantisJava/src/atlantis/graphics/ADrawnGraphics2D.java
deleted file mode 100755
index 5cd633a5e93..00000000000
--- a/graphics/AtlantisJava/src/atlantis/graphics/ADrawnGraphics2D.java
+++ /dev/null
@@ -1,149 +0,0 @@
-package atlantis.graphics;
-
-import java.awt.Graphics;
-import java.awt.Rectangle;
-import java.awt.Shape;
-import java.awt.geom.PathIterator;
-import java.util.ArrayList;
-import java.util.HashMap;
-
-import atlantis.data.ACalorimeterData;
-import atlantis.event.AData;
-import atlantis.event.AEvent;
-import atlantis.event.AEventManager;
-import atlantis.data.AHistogram;
-import atlantis.list.AList;
-import atlantis.list.AListManager;
-import atlantis.utils.ALogger;
-
-/**
- * Simple graphics context simply decides whether something was drawn or not
- */
-
-public class ADrawnGraphics2D extends ATemplateGraphics2D
-{
- private static ALogger logger = ALogger.getLogger(ADrawnGraphics2D.class);
- private static AEventManager eventManager = AEventManager.instance();
-
- private static HashMap map;
- private static ArrayList histogramList;
-
- public ADrawnGraphics2D(Rectangle bounds)
- {
- super(bounds);
- map = new HashMap();
- histogramList = new ArrayList();
- AEvent event = eventManager.getCurrentEvent();
- if (event != null)
- {
- AData[] data = event.getData();
- for (int i = 0; i < data.length; ++i)
- {
- map.put(data[i], new boolean[data[i].getNumData()]);
- }
- }
- } // ADrawnGraphics2D() ----------------------------------------------------
-
- ADrawnGraphics2D(ADrawnGraphics2D a)
- {
- super(a);
- } // ADrawnGraphics2D() ----------------------------------------------------
-
- public static void updateLastDrawn()
- {
- AListManager.getInstance().clearLastDrawn();
- AEvent event = eventManager.getCurrentEvent();
- if (event != null)
- {
- AData[] data = event.getData();
- for (int i = 0; i < data.length; ++i)
- {
- boolean[] drawn = (boolean[]) map.get(data[i]);
- if (data[i] instanceof ACalorimeterData)
- {
- drawn = ((ACalorimeterData) data[i]).expandDrawn(drawn);
- }
- AListManager.getInstance().addLastDrawn(new AList(data[i], drawn));
- }
- for (int i = 0; i < histogramList.size(); ++i)
- {
- boolean[] drawn = (boolean[]) map.get(histogramList.get(i));
- AListManager.getInstance().addLastDrawn(new AList((AData)histogramList.get(i), drawn));
- }
- }
- } // updateLastDrawn() -----------------------------------------------------
-
- public Graphics create()
- {
- return new ADrawnGraphics2D(this);
- }
-
- public void drawLine(double h0, double v0, double h1, double v1)
- {
- if (AGraphics.currentData != null)
- {
- ((boolean[]) map.get(AGraphics.currentData))[AGraphics.currentIndex] = true;
- }
- }
-
- public void fillRect(int h, int v, int width, int height)
- {
- double dh = width / 2.;
- double dv = height / 2.;
- drawLine(h - dh, v - dv, h + dh, v - dv);
- drawLine(h + dh, v - dv, h + dh, v + dv);
- drawLine(h + dh, v + dv, h - dh, v + dv);
- drawLine(h - dh, v + dv, h - dh, v - dv);
- }
-
- public void draw(Shape s)
- {
- PathIterator path = s.getPathIterator(null);
- double[] coords = new double[6];
- double h0 = 0.;
- double v0 = 0.;
- double h1 = 0.;
- double v1 = 0.;
- while (!path.isDone())
- {
- int segType = path.currentSegment(coords);
-
- switch (segType)
- {
- case PathIterator.SEG_MOVETO:
- h0 = coords[0];
- v0 = coords[1];
- break;
-
- case PathIterator.SEG_LINETO:
- case PathIterator.SEG_CUBICTO:
- h1 = coords[0];
- v1 = coords[1];
- drawLine(h0, v0, h1, v1);
- h0 = h1;
- v0 = v1;
- break;
-
- case PathIterator.SEG_CLOSE:
- break;
-
- default:
- logger.error(" Error unknown segment type");
- break;
- }
- path.next();
- }
- }
-
- public void fill(Shape s)
- {
- draw(s);
- }
-
- public void addHistogramData(AHistogram data)
- {
- histogramList.add(data);
- map.put(data, new boolean[data.getNumData()]);
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/graphics/ADummyGraphics2D.java b/graphics/AtlantisJava/src/atlantis/graphics/ADummyGraphics2D.java
deleted file mode 100755
index 9c8cded5a0a..00000000000
--- a/graphics/AtlantisJava/src/atlantis/graphics/ADummyGraphics2D.java
+++ /dev/null
@@ -1,215 +0,0 @@
-package atlantis.graphics;
-
-import java.awt.*;
-import java.awt.image.*;
-import java.awt.image.renderable.*;
-import java.awt.geom.*;
-import java.awt.font.*;
-
-/**
- * This graphics is used when nothing should really be drawn on the screen
- */
-
-public class ADummyGraphics2D extends Graphics2D {
-
- private int x;
- private int y;
- private int width;
- private int height;
-
- public ADummyGraphics2D() {}
-
- public Rectangle getClipBounds() {
- return new Rectangle(x, y, width, height);
- }
-
- public void setClip(int x, int y, int width, int height) {
- this.x=x;
- this.y=y;
- this.width=width;
- this.height=height;
- }
-
- public void transform(AffineTransform z) {}
-
- public void fill(Shape z) {}
-
- public void draw(Shape z) {}
-
- public void drawImage(BufferedImage a, BufferedImageOp b, int c, int z) {}
-
- public boolean drawImage(Image a, AffineTransform b, ImageObserver z) {
- return false;
- }
-
- public void drawRenderedImage(RenderedImage a, AffineTransform z) {}
-
- public void drawRenderableImage(RenderableImage a, AffineTransform z) {}
-
- public void drawString(java.text.AttributedCharacterIterator a, float b, float z) {}
-
- public void drawString(String a, int b, int z) {}
-
- public void drawString(String a, float b, float z) {}
-
- public void drawString(java.text.AttributedCharacterIterator a, int b, int z) {}
-
- public void drawGlyphVector(GlyphVector a, float b, float z) {}
-
- public boolean hit(Rectangle a, Shape b, boolean z) {
- return false;
- }
-
- public GraphicsConfiguration getDeviceConfiguration() {
- return null;
- }
-
- public void setComposite(Composite z) {}
-
- public void setPaint(Paint z) {}
-
- public void setStroke(Stroke z) {}
-
- public void setRenderingHint(RenderingHints.Key a, Object z) {}
-
- public Object getRenderingHint(RenderingHints.Key z) {
- return null;
- }
-
- public void setRenderingHints(java.util.Map z) {}
-
- public void addRenderingHints(java.util.Map z) {}
-
- public RenderingHints getRenderingHints() {
- return null;
- }
-
- public void translate(double a, double z) {}
-
- public void translate(int a, int z) {}
-
- public void rotate(double a, double b, double z) {}
-
- public void rotate(double z) {}
-
- public void scale(double a, double z) {}
-
- public void shear(double a, double z) {}
-
- public void setTransform(AffineTransform z) {}
-
- public AffineTransform getTransform() {
- return null;
- }
-
- public Paint getPaint() {
- return null;
- }
-
- public Composite getComposite() {
- return null;
- }
-
- public void setBackground(Color z) {}
-
- public Color getBackground() {
- return null;
- }
-
- public Stroke getStroke() {
- return null;
- }
-
- public void clip(Shape z) {}
-
- public FontRenderContext getFontRenderContext() {
- return null;
- }
-
- public void setColor(Color z) {}
-
- public Graphics create() {
- return null;
- }
-
- public boolean drawImage(Image a, int b, int c, int d, int e, int f, int g, int h, int i, ImageObserver z) {
- return false;
- }
-
- public boolean drawImage(Image a, int b, int c, ImageObserver z) {
- return false;
- }
-
- public boolean drawImage(Image a, int b, int c, Color d, ImageObserver z) {
- return false;
- }
-
- public boolean drawImage(Image a, int b, int c, int d, int e, Color f, ImageObserver z) {
- return false;
- }
-
- public boolean drawImage(Image a, int b, int c, int d, int e, ImageObserver z) {
- return false;
- }
-
- public boolean drawImage(Image a, int b, int c, int d, int e, int f, int g, int h, int i, Color j, ImageObserver z) {
- return false;
- }
-
- public Color getColor() {
- return null;
- }
-
- public void fillRect(int a, int b, int c, int z) {}
-
- public void setPaintMode() {}
-
- public void setXORMode(Color z) {}
-
- public Font getFont() {
- return null;
- }
-
- public void setFont(Font z) {}
-
- public FontMetrics getFontMetrics(Font z) {
- return null;
- }
-
- // public Rectangle getClipBounds () { return null;}
- public void clipRect(int a, int b, int c, int z) {}
-
- // public void setClip(int a,int b,int c,int z) { }
- public void setClip(Shape z) {}
-
- public Shape getClip() {
- return null;
- }
-
- public void copyArea(int a, int b, int c, int d, int e, int z) {}
-
- public void drawLine(int a, int b, int c, int z) {}
-
- public void clearRect(int a, int b, int c, int z) {}
-
- public void drawRoundRect(int a, int b, int c, int d, int e, int z) {}
-
- public void fillRoundRect(int a, int b, int c, int d, int e, int z) {}
-
- public void drawOval(int a, int b, int c, int z) {}
-
- public void fillOval(int a, int b, int c, int z) {}
-
- public void drawArc(int a, int b, int c, int d, int e, int z) {}
-
- public void fillArc(int a, int b, int c, int d, int e, int z) {}
-
- public void drawPolyline(int[] a, int[] b, int z) {}
-
- public void drawPolygon(int[] a, int[] b, int z) {}
-
- public void fillPolygon(int[] a, int[] b, int z) {}
-
- public void dispose() {}
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/graphics/AGLPixelGraphics.java b/graphics/AtlantisJava/src/atlantis/graphics/AGLPixelGraphics.java
deleted file mode 100644
index 299aa5fd26b..00000000000
--- a/graphics/AtlantisJava/src/atlantis/graphics/AGLPixelGraphics.java
+++ /dev/null
@@ -1,47 +0,0 @@
-package atlantis.graphics;
-
-import atlantis.canvas.AGLGraphics;
-
-/*
- * This class subclasses APixelGraphics to allow some optimisations slightly
- * higher up the graphics chain in cases where OpenGL renders faster in
- * certain ways
- *
- * @author Adam Davison
- */
-
-public class AGLPixelGraphics extends APixelGraphics {
-
- protected AGLGraphics m_glg;
-
- public AGLPixelGraphics(AGLGraphics g) {
- super(g);
- m_glg = g;
- }
-
- @Override
- public void fillPolygon(double[] h, double[] v, int numPoints) {
- /*int type = getContainmentType(h, v, numPoints, POLYGON);
- if (type == FULLY_INSIDE || type == INTERSECTS) {
- if (type == INTERSECTS) {
- ACoord clipped = clipper.clipPolygon(h, v, numPoints);
- h = clipped.hv[0][0];
- v = clipped.hv[1][0];
- numPoints = h.length;
- }*/
- /*int[] hInt = new int[numPoints];
- int[] vInt = new int[numPoints];
- for (int i = 0; i < numPoints; ++i) {
- hInt[i] = (int) h[i];
- vInt[i] = (int) v[i];
- }*/
- updateColor();
- m_glg.fillPolygon(h, v, numPoints);
- //g.drawPolygon(hInt, vInt, numPoints);
- /*} else if (type == CONTAINS) {
- Rectangle bounds = g.getClipBounds();
- updateColor();
- g.fillRect((int) Math.rint(bounds.getX()), (int) Math.rint(bounds.getY()), (int) Math.rint(bounds.getWidth()), (int) Math.rint(bounds.getHeight()));
- }*/
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/graphics/AGraphics.java b/graphics/AtlantisJava/src/atlantis/graphics/AGraphics.java
deleted file mode 100755
index 225eb608a88..00000000000
--- a/graphics/AtlantisJava/src/atlantis/graphics/AGraphics.java
+++ /dev/null
@@ -1,407 +0,0 @@
-package atlantis.graphics;
-
-import atlantis.canvas.AGLGraphics;
-import java.awt.Color;
-import java.awt.AlphaComposite;
-import java.awt.Composite;
-import java.awt.Font;
-import java.awt.Graphics;
-import java.awt.Graphics2D;
-import java.awt.Rectangle;
-import java.awt.Shape;
-import java.awt.Image;
-import java.awt.Stroke;
-
-import atlantis.event.AData;
-import atlantis.geometry.ADetectors;
-import atlantis.graphics.colormap.AColorMap;
-import atlantis.parameters.APar;
-import atlantis.utils.APolygon;
-
-import org.sourceforge.jlibeps.epsgraphics.*;
-import org.apache.batik.svggen.SVGGraphics2D;
-
-/**
- * Normally all drawing should be done on an AGraphics. For special uses, e.g.
- * Braintest projections, standard Java Graphics may be used. To allow this,
- * projections are always given a graphics which they must convert to an
- * AGraphics with AGraphics.makeAGraphics. AGraphics provides picking of drawn
- * objects.
- */
-
-public abstract class AGraphics
-{
- protected Graphics2D g;
- AClipper clipper = null;
- Color currentColor;
- Color lastDrawnColor = null;
- Rectangle bounds;
- int lineWidth = 1;
- int size;
- int symbol;
- ADrawParameters lastDrawParameters = null;
-
- static AData currentData = null;
- static ADetectors currentDetector = null;
- static int currentIndex;
-
- public static final int SYMBOL_FILLED_BOX = 0;
- public static final int SYMBOL_HORIZONTAL_LINE = 1;
- public static final int SYMBOL_VERTICAL_LINE = 2;
- public static final int SYMBOL_PLUS = 3;
- public static final int SYMBOL_FILLED_CIRCLE = 4;
-
- public static final int DRAW = 0;
- public static final int FILL = 1;
-
- protected static final int NUM_LAYERS = 2;
-
- protected static final int FULLY_INSIDE = 0;
- protected static final int FULLY_OUTSIDE = 1;
- protected static final int CONTAINS = 2;
- protected static final int INTERSECTS = 3;
-
- protected static final int POLYGON = 0;
- protected static final int POLYLINE = 1;
-
- AGraphics(Graphics g)
- {
- this.g = (Graphics2D) g;
- if (g.getClipBounds() != null)
- clipper = new AClipper(g.getClipBounds());
- currentColor = g.getColor();
- }
-
- public Graphics2D getGraphics2D()
- {
- return g;
- }
-
- public static AGraphics makeAGraphics(Graphics g)
- {
- if (g instanceof EpsGraphics2D || g instanceof APickingGraphics2D ||
- g instanceof ADrawnGraphics2D || g instanceof SVGGraphics2D)
- {
- return new AVectorGraphics(g);
- }
- else if (g instanceof AGLGraphics)
- {
- return new AGLPixelGraphics((AGLGraphics)g);
- }
- else
- {
- return new APixelGraphics(g);
- }
- }
-
- public static void setCurrentDataAndIndex(AData current, int index)
- {
- currentData = current;
- currentIndex = index;
- }
-
- public static void setCurrentDetectorAndIndex(ADetectors current, int index)
- {
- currentDetector = current;
- currentIndex = index;
- }
-
- public static void clearCurrentDetectorAndIndex()
- {
- currentDetector = null;
- currentIndex = -1;
- }
-
- public static void clearCurrentDataAndIndex()
- {
- currentData = null;
- currentIndex = -1;
- }
-
- public void setFont(Font f)
- {
- g.setFont(f);
- }
-
- public void setStroke(Stroke s)
- {
- g.setStroke(s);
- }
-
- public void setColor(Color c)
- {
- currentColor = c;
- }
-
- public void updateColor()
- {
- if (currentColor != lastDrawnColor)
- {
- g.setColor(currentColor);
- lastDrawnColor = currentColor;
- }
- }
-
- public abstract void setLineWidth(int lineWidth);
-
- public void updateDrawParameters(ADrawParameters dp)
- {
- if (dp != lastDrawParameters)
- {
- setColor(dp.color);
- lineWidth = Math.max(dp.lineWidth, 1) + 2 * dp.frameWidth;
- setLineWidth(lineWidth);
- size = dp.size + 2 * dp.frameWidth;
- symbol = dp.symbol;
- lastDrawParameters = dp;
- }
- }
-
- public void drawString(String str, double x, double y)
- {
- g.drawString(str, (int) x, (int) y);
- }
-
- public void draw(Shape s)
- {
- g.draw(s);
- }
-
- public void drawPoint(AData detector, int index, double h, double v, int pixelsH, int pixelsV)
- {
- setCurrentDataAndIndex(detector, index);
- drawPoint(h, v, pixelsH, pixelsV);
- clearCurrentDataAndIndex();
- }
-
- public void drawPoint(double h, double v, int pixelsH, int pixelsV)
- {
- if (clipper.isPointWithin(h, v))
- fillRect(h, v, pixelsH, pixelsV);
- }
-
- public void drawSymbol(double h, double v)
- {
- if (clipper.isPointWithin(h, v))
- {
- if (symbol == SYMBOL_FILLED_BOX)
- {
- fillRect(h, v, size, size);
- }
- else if (symbol == SYMBOL_HORIZONTAL_LINE)
- {
- fillRect(h, v, size, lineWidth);
- }
- else if (symbol == SYMBOL_VERTICAL_LINE)
- {
- fillRect(h, v, lineWidth, size);
- }
- else if (symbol == SYMBOL_PLUS)
- {
- fillRect(h, v, size, lineWidth);
- fillRect(h, v, lineWidth, size);
- }
- else if (symbol == SYMBOL_FILLED_CIRCLE)
- {
- fillOval(h, v, size, size);
- }
- }
- }
-
- //Draw an image at postion x,y of this graphics context
- //Introduced for FishEye symbol showing FishEye status
- public void drawImage(Image img, int x, int y){
- //Draw the image on screen
- g.drawImage(img,x,y,null);
- }
-
-
- public void fillPolygon(AData detector, int index, double[] h, double[] v, int numPoints)
- {
- setCurrentDataAndIndex(detector, index);
- fillPolygon(h, v, numPoints);
- clearCurrentDataAndIndex();
- }
-
- public void fillRect(int h, int v, int width, int height)
- {
- updateColor();
- g.fillRect(h, v, width, height);
- }
-
- public void fillOval(int h, int v, int width, int height)
- {
- g.fillOval(h, v, width, height);
- }
-
- public abstract void drawPolyline(double[] h, double[] v, int numPoints);
-
- public abstract void drawDottedPolyline(double[] h, double[] v, int numPoints);
-
- public abstract void drawSmoothPolyline(double[] h0, double[] v0, int numPoints0);
-
- public abstract void drawLine(double h0, double v0, double h1, double v1);
-
- public abstract void drawPolygon(double[] h, double[] v, int numPoints);
-
- protected abstract void fillRect(double h, double v, int width, int height);
-
- protected abstract void fillOval(double h, double v, int width, int height);
-
- public void fillPolygon(ADetectors det, int index, double[] h, double[] v, int numPoints)
- {
- setCurrentDetectorAndIndex(det, index);
- fillPolygon(h, v, numPoints);
- clearCurrentDetectorAndIndex();
- }
-
- public void fillPolygon(double[] h, double[] v, int numPoints, float alpha)
- {
- Composite originalComposite = g.getComposite();
- int ACtype = AlphaComposite.SRC_OVER;
- g.setComposite(AlphaComposite.getInstance(ACtype, alpha));
- fillPolygon(h, v, numPoints);
- g.setComposite(originalComposite);
- }
-
- protected int getContainmentType(double[] h, double[] v, int numPoints, int shape)
- {
- int within = clipper.fastWithin(h, v, numPoints);
- if (within == AClipper.NONE_WITHIN)
- return FULLY_OUTSIDE;
- if (within == AClipper.ALL_WITHIN)
- return FULLY_INSIDE;
- for (int i = 0; i < numPoints - 1; ++i)
- if (clipper.isLineWithin(h[i], v[i], h[i + 1], v[i + 1]))
- return INTERSECTS;
- if (shape == POLYGON && numPoints > 1)
- if (clipper.isLineWithin(h[numPoints - 1], v[numPoints - 1], h[0], v[0]))
- return INTERSECTS;
- Rectangle bounds = g.getClipBounds();
- double xCentreClipped = bounds.getX() + bounds.getWidth() / 2.;
- double yCentreClipped = bounds.getY() + bounds.getHeight() / 2.;
- if (isPointInside(h, v, numPoints, xCentreClipped, yCentreClipped))
- return CONTAINS;
- return FULLY_OUTSIDE;
- }
-
- public abstract void fillPolygon(double[] h, double[] v, int numPoints);
-
- public void drawPolygon(APolygon p)
- {
- drawPolygon(p.getX(), p.getY(), p.nrNodes());
- }
-
- public static boolean isPointInside(double[] h, double[] v, int numPoints, double hP, double vP)
- {
- double[] a = new double[numPoints];
-
- for (int i = 0; i < numPoints; ++i)
- {
- a[i] = Math.atan2(v[i] - vP, h[i] - hP);
- }
- double[] d = new double[numPoints];
-
- for (int i = 0; i < numPoints; ++i)
- {
- if (i < numPoints - 1)
- d[i] = a[i + 1] - a[i];
- else
- d[i] = a[0] - a[i];
- if (d[i] > Math.PI)
- d[i] -= 2. * Math.PI;
- else if (d[i] < -Math.PI)
- d[i] += 2. * Math.PI;
- }
- double sum = 0.;
-
- for (int i = 0; i < numPoints; ++i)
- {
- sum += d[i];
- }
- if (Math.abs(sum) > Math.PI)
- return true;
- else
- return false;
- }
-
- public void draw(ACoord display)
- {
- ADrawable source = display.source;
-
- if (source == null)
- return;
- ADrawParameters adp = source.getDrawParameters(0, 0);
-
- if (adp.getForceSymbols() == true || adp.getMinSize() > 0)
- display.toSymbols(adp.getForceSymbols(), adp.getMinSize());
- Color[] colorMap = AColorMap.getColors();
- int[] index = display.index;
- int[] c = source.getColor(index);
- int[] t = source.getType(index);
- double[][] h = display.hv[0];
- double[][] v = display.hv[1];
-
- for (int layer = 0; layer < NUM_LAYERS; layer++)
- {
- for (int type = 0; type < source.getNumTypes(); type++)
- {
- ADrawParameters dp = source.getDrawParameters(layer, type);
- int drawType = dp.getDrawOrFill();
- updateDrawParameters(dp);
- if (dp.draw)
- {
- for (int j = 0; j < t.length; j++)
- {
- if (t[j] == type)
- {
- if (layer == NUM_LAYERS - 1)
- {
- setColor(colorMap[c[j]]);
- if (source instanceof AData)
- setCurrentDataAndIndex((AData) source, index[j]);
- }
- if (display.type == ACoord.SYMBOLS)
- drawSymbol(h[0][j], v[0][j]);
- else if (display.type == ACoord.POLYGONS && h[j].length == 1)
- drawSymbol(h[j][0], v[j][0]);
- else if (display.type == ACoord.LINES)
- drawLine(h[0][j], v[0][j], h[1][j], v[1][j]);
- else if (display.type == ACoord.POLYLINES)
- drawPolyline(h[j], v[j], h[j].length);
- else if (display.type == ACoord.SMOOTH_POLYLINES)
- drawSmoothPolyline(h[j], v[j], h[j].length);
- else if (display.type == ACoord.DOTTED_POLYGONS)
- drawDottedPolyline(h[j], v[j], h[j].length);
- else if (display.type == ACoord.POLYGONS)
- {
- if (drawType == DRAW)
- drawPolygon(h[j], v[j], h[j].length);
- else if (drawType == FILL)
- fillPolygon(h[j], v[j], h[j].length);
- }
- else if (display.type == ACoord.TRANSPARENT_POLYGONS)
- {
- if(g instanceof EpsGraphics2D){
- // setComposite is currently unsupported for EpsGraphics2D
- // for now just draw as an outline, so we can still see
- // jets and the underlying objects
- drawPolygon(h[j], v[j], h[j].length);
- }
- else {
- Composite originalComposite = g.getComposite();
- int ACtype = AlphaComposite.SRC_OVER;
- g.setComposite(AlphaComposite.getInstance(ACtype, (float)APar.instance().get("Jet","Alpha").getD()));
- fillPolygon(h[j], v[j], h[j].length);
- g.setComposite(originalComposite);
- }
- }
- clearCurrentDataAndIndex();
- }
- }
- }
- }
- }
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/graphics/AIcon.java b/graphics/AtlantisJava/src/atlantis/graphics/AIcon.java
deleted file mode 100644
index a2add88871f..00000000000
--- a/graphics/AtlantisJava/src/atlantis/graphics/AIcon.java
+++ /dev/null
@@ -1,28 +0,0 @@
-package atlantis.graphics;
-
-import java.awt.Frame;
-
-import javax.swing.ImageIcon;
-
-import atlantis.globals.AGlobals;
-import atlantis.utils.AUtilities;
-
-/**
- *
- * @author waugh
- *
- */
-public class AIcon {
- /** Set icon image for a frame to be the Atlantis icon. */
- public static void setIconImage(Frame f)
- {
- String path = AGlobals.instance().getHomeDirectory() + "img" +
- System.getProperty("file.separator") +
- "atlantis_icon.gif";
- ImageIcon ii = AUtilities.getFileAsImageIcon(path);
- f.setIconImage(ii.getImage());
-
- } // setIconImage() -----------------------------------------------------
-
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/graphics/ALegoDraw.java b/graphics/AtlantisJava/src/atlantis/graphics/ALegoDraw.java
deleted file mode 100755
index ab9137ea80a..00000000000
--- a/graphics/AtlantisJava/src/atlantis/graphics/ALegoDraw.java
+++ /dev/null
@@ -1,1150 +0,0 @@
-package atlantis.graphics;
-import java.awt.BasicStroke;
-
-import java.awt.Color;
-import java.awt.Font;
-import java.awt.Stroke;
-import java.awt.geom.Point2D;
-
-import atlantis.canvas.AWindow;
-import atlantis.event.AEvent;
-import atlantis.data.ALVL1ResultData;
-import atlantis.data.ATriggerInfoData;
-import atlantis.graphics.colormap.AColorMap;
-import atlantis.parameters.AEnumeratorParameter;
-import atlantis.parameters.APar;
-import atlantis.projection.AProjectionLegoPlot;
-import atlantis.utils.AMath;
-
-public class ALegoDraw
-{
-
- protected static APar parameterStore = APar.instance();
-
- private static int legendHeight=0;
- private static int lineHeight = 17;//seperation of lines
- //colors to use in legend
-
- //width of lines in lego grid
- private static float legoGridWidth = 1.6f;
- private static float legoTowersWidth = 1.0f;
-
- private static Color textColor=Color.white,
- backgroundColor=AColorMap.getColors()[parameterStore.get("Color", "BkgFill").getI()],
- borderColor=Color.lightGray;
-
- public static Color getBackgroundColor()
- {
- return backgroundColor;
- }
-
- public static void fillBackground(AWindow window, AGraphics ag)
- {
-
- backgroundColor = AColorMap.getColors()[parameterStore.get("Color", "BkgFill").getI()]; // inherit bkg colour from main background colour
-
- ag.setColor(backgroundColor);
- ag.fillRect(0, 0, window.getWidth(), window.getHeight());
- }
-
- public static void drawLegend(AWindow window, AGraphics ag, AEvent event, double met, double maxEt, double AODmaxEt)
- {
- //colors to use
- textColor=Color.black;
- if(backgroundColor.getBlue()+backgroundColor.getGreen()+backgroundColor.getRed() < 400)
- textColor=Color.white;
- //change the font size (reset at end)
- float originalFontSize= ag.g.getFont().getSize2D();
- float newFontSize= (float) 0.9*originalFontSize;
- ag.g.setFont(ag.g.getFont().deriveFont(newFontSize));
- //variables to locate where to write/draw
- legendHeight = lineHeight+2;//distance from top of legend
- int indent = window.getWidth()- 200;//distance from left of legend
- int pos = 90;//distance to start writing second half of line
- //loop over Lvl1resultdata collections
- String[] colLvl1=event.getActiveCollectionNames("LVL1Result");
- ALVL1ResultData lvl1ResultData[] = null;
- if(colLvl1.length>0)
- lvl1ResultData = new ALVL1ResultData[colLvl1.length];
- for(int i=0;i<colLvl1.length;i++)
- {
- lvl1ResultData[i] = (ALVL1ResultData) event.get(colLvl1[i]);
- }
- ATriggerInfoData triggerInfoData = event.getTriggerInfoData();
-
- //check window is large enough
- if(window.getWidth()<250 || window.getHeight()<250)
- {
- drawWindowTooSmall(window, ag, indent);
- //reset font size
- ag.g.setFont(ag.g.getFont().deriveFont(originalFontSize));
- return;
- }
-
- //draw main legend
- if(parameterStore.get("LegoPlot", "MainLegend").getStatus())
- drawLegendMain(window, ag, event, met, maxEt, AODmaxEt, lvl1ResultData, indent, pos);
- //draw lvl1 sumEt and missEt
- if(parameterStore.get("LegoPlot", "L1EtLegend").getStatus())
- drawLegendL1ET(ag, lvl1ResultData, triggerInfoData, indent);
- //draw the item list
- boolean drawLegend=false;
- if(!drawLegend && parameterStore.get("LegoPlot", "L1Items").getStatus())drawLegend=true;
- if(!drawLegend && parameterStore.get("LegoPlot", "L2Items").getStatus())drawLegend=true;
- if(!drawLegend && parameterStore.get("LegoPlot", "EFItems").getStatus())drawLegend=true;
- if(drawLegend)
- drawLegendItems(window, ag, lvl1ResultData, indent);
-
- //reset font size
- ag.g.setFont(ag.g.getFont().deriveFont(originalFontSize));
- }
-
- public static void drawWindowTooSmall(AWindow window, AGraphics ag, int indent)
- {
-
- //change indent to make legend smaller
- indent+=135;
- // create legend boarder with two concentric rectangles
- // outer rectangle:
- ag.setColor(borderColor);
- ag.fillRect(indent - 4, 5, 65, 3*lineHeight);
- // inner rectangle:
- ag.setColor(backgroundColor);
- ag.fillRect(indent - 4 + 2, 7, 65 - 4, 3*lineHeight-4);
- ag.setColor(textColor);
- ag.updateColor();
-
- ag.drawString("Window", indent + 6, legendHeight);
- legendHeight += lineHeight;
- ag.drawString("too small", indent + 6, legendHeight);
- legendHeight += lineHeight;
- ag.drawString("for legend", indent + 6, legendHeight);
- legendHeight += lineHeight;
- }
-
- public static void drawLegendMain(AWindow window, AGraphics ag, AEvent event, double met, double maxEt, double AODmaxEt, ALVL1ResultData lvl1ResultData[], int indent, int pos)
- {
-
- // create legend boarder with two concentric rectangles
- // outer rectangle:
- ag.setColor(borderColor);
- //ag.fillRect(/*indent - 4*/window.getWidth()/1.8, /*5*/window.getHeight()/3.0, (int)(1-(window.getWidth()/1.8)), (int)(1-(window.getHeight()/3.0)));
- ag.fillRect(indent - 4, 5, 200, 105);
-
- // inner rectangle:
- ag.setColor(backgroundColor);
- ag.fillRect(indent - 4 + 2, 7, 200 - 4, 105 - 4);
- //ag.fillRect(/*indent - 4*/window.getWidth()/1.8 +2, /*5*/window.getHeight()/3.0 +2, (int)(1-(window.getWidth()/1.8))+4, (int)(1-(window.getHeight()/3.0))+4);
-
- ag.setColor(textColor);
- ag.updateColor();
-
- //First item Missing ET (may remove met box from plot later)
- if(met!=0)
- drawLegendPartMain1(ag, event, met, indent, pos);
- else
- ag.drawString("No Missing Et", indent + 6, legendHeight);
- legendHeight += lineHeight;
- ag.setColor(textColor);
- ag.updateColor();
-
- //Second item colourby
- //make sure there are cells by checking the maximum energy
- //and that there have been colours added to the colourset
- //(can have maxE and no colours when scaling to AOD)
- if(maxEt!=0 && AProjectionLegoPlot.colorset.size()>0)
- drawLegendMain2(ag, indent, pos);
- else
- {
- ag.setColor(textColor);
- ag.updateColor();
- ag.drawString("No cells", indent + 6, legendHeight);
- }
- legendHeight += lineHeight;
- ag.setColor(textColor);
- ag.updateColor();
-
- //Third item maximum height of towers
- if(maxEt!=0 || AODmaxEt!=0)
- drawLegendMain3(ag, maxEt, AODmaxEt, indent, pos);
- else
- {
- ag.drawString("No towers", indent + 6, legendHeight);
- legendHeight += lineHeight;
- }
- legendHeight += lineHeight;
- ag.setColor(textColor);
- ag.updateColor();
-
- //Fourth item lvl1 result
- if (lvl1ResultData == null){
- ag.drawString("Trigger Decision N/A", indent+6, legendHeight);
- legendHeight+=lineHeight;//move by a line to keep same spacing
- }else if (lvl1ResultData.length>1){
- ag.drawString(">1 LVL1Result collections selected", indent+6, legendHeight);
- legendHeight+=lineHeight;
- ag.drawString("View on event properties or choose 1", indent+6, legendHeight);
- }else{
- drawLegendMain4(ag, lvl1ResultData[0], indent, pos);
- }
- legendHeight+=lineHeight;
- ag.setColor(textColor);
- ag.updateColor();
- }
-
- public static void drawLegendPartMain1(AGraphics ag, AEvent event, double met, int indent, int pos)
- {
- ag.setColor(AProjectionLegoPlot.defaultColorMap[parameterStore.get("ETMis", "Constant").getI()]);
- //draw dashed line
- ag.fillRect(indent + 6, 11, 5, 3);
- ag.fillRect(indent + 6 + 10, 11, 5, 3);
- ag.fillRect(indent + 6 + 20, 11, 5, 3);
- ag.fillRect(indent + 6 + 30, 11, 5, 3);
- ag.setColor(textColor);
- ag.updateColor();
- String[] names = event.getActiveCollectionNames("ETMis");
- if(names.length==1)
- ag.drawString("Missing ET= " + Math.round(met) + " GeV" , indent + 0.6*pos, legendHeight);
- else
- ag.drawString("Max Missing ET= " + Math.round(met) + " GeV" , indent + 0.6*pos, legendHeight);
- }
-
- public static void drawLegendMain2(AGraphics ag, int indent, int pos)
- {
- String modeName;
- if (AProjectionLegoPlot.mode == 0)
- {
- modeName="LAr";
- }
- else if (AProjectionLegoPlot.mode == 1)
- {
- modeName="LVL1TriggerTower";
- }
- else
- {
- modeName="LVL1JetElement";
- }
- AEnumeratorParameter param = (AEnumeratorParameter) parameterStore.get(modeName, "ColorFunction");
- String colorFunction = param.getText(param.getI());
- ag.drawString(colorFunction + " (1-" + AProjectionLegoPlot.colorset.size() + ")",indent + pos, legendHeight);
- int barwidth = 6, barheight = 6;
- if(AProjectionLegoPlot.getDrawEMHAD())
- {
- if(AProjectionLegoPlot.colorset.size()==2)
- {
- //for Em/had option should only have 2 colors
- ag.setColor(AProjectionLegoPlot.defaultColorMap[AProjectionLegoPlot.colorEM]);
- ag.fillRect(indent + barwidth * 2, 28, barwidth * 2, barheight);
- ag.setColor(AProjectionLegoPlot.defaultColorMap[AProjectionLegoPlot.colorHad]);
- ag.fillRect(indent + 2 * barwidth* 2, 28, barwidth * 2, barheight);
- }
- else
- {
- //if more colors then lists must be in use
- int c = 0;
- ++c;
- ag.setColor(AProjectionLegoPlot.defaultColorMap[AProjectionLegoPlot.colorEM]);
- ag.fillRect(indent + c * barwidth, 28, barwidth, barheight);
- ++c;
- ag.setColor(AProjectionLegoPlot.defaultColorMap[AProjectionLegoPlot.colorHad]);
- ag.fillRect(indent + c * barwidth, 28, barwidth, barheight);
- for (int i = 0; i <AProjectionLegoPlot.caloColorMap.length ; i++)
- {
- if (!AProjectionLegoPlot.colorset.contains(new Integer(i)))
- continue;
- if(i==AProjectionLegoPlot.colorEM || i==AProjectionLegoPlot.colorHad)
- continue;
- ++c;
- ag.setColor(AProjectionLegoPlot.caloColorMap[i]);
- ag.fillRect(indent + c * barwidth, 28, barwidth, barheight);
- }
- }
- }
- else
- {
- //if not Em/Had then loop over colors
- int c = 0;
- barwidth = 90/AProjectionLegoPlot.caloColorMap.length;
- for (int i = 0; i <AProjectionLegoPlot.caloColorMap.length ; i++)
- {
- if (!AProjectionLegoPlot.colorset.contains(new Integer(i)))
- continue;
- ++c;
- ag.setColor(AProjectionLegoPlot.caloColorMap[i]);
- ag.fillRect(indent + c * barwidth, 28, barwidth, barheight);
- }
- }
- }
-
- public static void drawLegendMain3(AGraphics ag, double maxEt, double AODmaxEt, int indent, int pos)
- {
- ag.drawString( "Height of tallest tower:", indent + 6, legendHeight);
- //next line has the values
- legendHeight += lineHeight;
- if (parameterStore.get("LegoPlot", "ETAxisHeight").getD() > 0.0)
- ag.drawString("User selection: " + Math.round(maxEt) + " GeV ", indent +6, legendHeight);
- else if (parameterStore.get("LegoPlot", "ScaleToAOD").getStatus())
- ag.drawString("Scale to AOD: " + Math.round(maxEt) + " GeV ", indent +6, legendHeight);
- else
- {
- if(maxEt!=0)
- {
- ag.drawString("Cells: " + Math.round(maxEt) + " GeV ", indent +6, legendHeight);
- if(AODmaxEt!=0)
- ag.drawString("AOD: " + Math.round(AODmaxEt) + " GeV ", indent + pos, legendHeight);
- }
- else
- ag.drawString("AOD: " + Math.round(AODmaxEt) + " GeV ", indent + 6, legendHeight);
- }
- }
-
- public static void drawLegendMain4(AGraphics ag, ALVL1ResultData lvl1ResultData, int indent, int pos)
- {
- ag.drawString("Trigger Decision:", indent +6, legendHeight);
- legendHeight+=lineHeight;
- String[] trigRes={"NA","NA","NA"};
- int[] temp=new int[3];
- temp[0]=lvl1ResultData.getPassedL1(0);
- temp[1]=lvl1ResultData.getPassedL2(0);
- temp[2]=lvl1ResultData.getPassedEF(0);
- for(int i=0;i<3;i++)
- {
- switch(temp[i])
- {
- case -1:
- trigRes[i]="N/C";
- break;
- case 0:
- trigRes[i]="failed";
- break;
- case 1:
- trigRes[i]="passed";
- break;
- default:
- trigRes[i]="NA";
- }
- }
- ag.drawString("L1:" + trigRes[0] +" L2:" + trigRes[1]+" EF:" + trigRes[2], indent +6, legendHeight);
- }
-
- public static void drawLegendL1ET(AGraphics ag, ALVL1ResultData lvl1ResultData[], ATriggerInfoData triggerInfoData, int indent)
- {
- // create legend boarder with two concentric rectangles
- // outer rectangle:
- ag.setColor(borderColor);
- ag.fillRect(indent - 4, legendHeight, 200, (int) (lineHeight*1.5));
- // inner rectangle:
- ag.setColor(backgroundColor);
- ag.fillRect(indent - 4 + 2, legendHeight + 2, 200 - 4, (int) (lineHeight*1.5 - 4));
- ag.setColor(textColor);
- ag.updateColor();
- legendHeight+=lineHeight;
- //if no trigger info and "All" Lvlresult selected display warning
- if(triggerInfoData==null && lvl1ResultData!=null && lvl1ResultData.length>1){
- ag.drawString(">1 LVL1Result collections selected", indent+6, legendHeight);
- legendHeight+=lineHeight;
- return;
- }
-
- float LVL1EtMiss=-1.0f,LVL1SumEt=-1.0f;
- if(triggerInfoData!=null)
- {
- LVL1EtMiss=triggerInfoData.getEnergyEtMiss(0);
- LVL1SumEt=triggerInfoData.getEnergySumEt(0);
- }
- else if(lvl1ResultData!=null && lvl1ResultData.length==1)
- {
- LVL1EtMiss=lvl1ResultData[0].getEnergyEtMiss(0);
- LVL1SumEt=lvl1ResultData[0].getEnergySumEt(0);
- }
- String LVL1EtMissOutput,LVL1SumEtOutput;
- if(LVL1EtMiss>0)
- LVL1EtMissOutput=""+LVL1EtMiss;
- else
- LVL1EtMissOutput="N/A";
- if(LVL1SumEt>0)
- LVL1SumEtOutput=""+LVL1SumEt;
- else
- LVL1SumEtOutput="N/A";
-
- ag.drawString("L1-EtMiss: "+LVL1EtMissOutput+" L1-SumEt: "+LVL1SumEtOutput, indent , legendHeight);
- legendHeight+=lineHeight;
- }
-
- public static void drawLegendItems(AWindow window, AGraphics ag, ALVL1ResultData lvl1ResultData[], int indent)
- {
- // ag.setStroke(new BasicStroke(legoTowersWidth)); returning to original line width
-
- if(lvl1ResultData!=null && lvl1ResultData.length>1){
- //create legend boarder with two concentric rectangles
- //outer rectangle:
- ag.setColor(borderColor);
- ag.fillRect(indent - 4, legendHeight, 200, (int) (lineHeight*5.5));
- // inner rectangle:
- ag.setColor(backgroundColor);
- ag.fillRect(indent - 4 + 2, legendHeight + 2, 200 - 4, (int) (lineHeight*5.5 - 4));
- ag.setColor(textColor);
- ag.updateColor();
- legendHeight+=lineHeight;
- ag.drawString(">1 LVL1Result collections selected", indent+6, legendHeight);
- legendHeight+=lineHeight;
- ag.drawString("Either select 1 LVL1Result collection", indent+6, legendHeight);
- legendHeight+=lineHeight;
- ag.drawString("from: Calo->LVL1Result", indent+6, legendHeight);
- legendHeight+=lineHeight;
- ag.drawString("or to see all items select:", indent+6, legendHeight);
- legendHeight+=lineHeight;
- ag.drawString("file->Event Properties", indent+6, legendHeight);
- legendHeight+=lineHeight;
- return;
- }
-
- //output message to say no lvl1result
- if(lvl1ResultData==null){
- ag.setColor(borderColor);
- ag.updateColor();
- ag.fillRect(window.getWidth() -200 - 4, legendHeight+4, 200, (int) Math.round(1.5*lineHeight));
- ag.setColor(backgroundColor);
- ag.updateColor();
- ag.fillRect(window.getWidth() -200 - 4 + 2, legendHeight +4+ 2, 200 - 4, (int) Math.round(1.5*lineHeight)-4);
- ag.setColor(textColor);
- ag.updateColor();
- legendHeight+=lineHeight;
- ag.drawString("No LVL1Result collection in event", window.getWidth() - 200 + 2, legendHeight+4);
- return;
- }
-
- int origlineHeight =lineHeight;//save lineheight to be reset at end of function
- lineHeight*=0.8;//for item list bunch together
- int startrowHeight =legendHeight;
-
- //now output items in columns in new legend box
-
- //lists to draw
- int dolist1 = parameterStore.get("LegoPlot", "L1Items").getStatus()?1:0;
- int dolist2 = parameterStore.get("LegoPlot", "L2Items").getStatus()?1:0;
- int dolist3 = parameterStore.get("LegoPlot", "EFItems").getStatus()?1:0;
-
- //number of items per column and number of columns
- int maxItems=(int) Math.round(((0.8*window.getHeight()-legendHeight)/lineHeight )-0.5);
- int columnWidth= 72;
- int maxColumns=(int) Math.floor((0.9*window.getWidth())/columnWidth);
-
- // store items and headers
- String[][] items=new String[3][];
- if(dolist1>0) items[0]=newList("---L1 items---", lvl1ResultData[0].getCtpItemListSplit(0,true));
- if(dolist2>0) items[1]=newList("---L2 items---", lvl1ResultData[0].getitemListL2Split(0,true));
- if(dolist3>0) items[2]=newList("---EF items---", lvl1ResultData[0].getitemListEFSplit(0,true));
-
- //number of columns for each list
- int[] num=new int[3];
- num[0]= (dolist1==0)? 0 : (int) Math.ceil(items[0].length/((double)maxItems));
- num[1]= (dolist2==0)? 0 : (int) Math.ceil(items[1].length/((double)maxItems));
- num[2]= (dolist3==0)? 0 : (int) Math.ceil(items[2].length/((double)maxItems));
-
- boolean doWarning=false;//for printing see event properties message
- //calculate total number of columns
- if(num[0]+num[1]+num[2]>maxColumns){
- //too many in list so each can just have the average
- int av = (int) Math.floor(maxColumns/((double)(dolist1+dolist2+dolist3)));
- if(dolist1>0) num[0]=av;
- if(dolist2>0) num[1]=av;
- if(dolist3>0) num[2]=av;
- doWarning=true;
- }
- int noOfColumns=num[0]+num[1]+num[2];
-
- //now store each column into an array [column][row]
- String[][] list=new String[noOfColumns][maxItems];
- int list_counter=0;
- //loop over each list
- for(int i=0; i<3; i++){
- //loop over items in a list
- int item_counter=0;
- //only loop over columns can display for each list
- for(int j=0; j<num[i]; j++){
- //loop over all items for a column
- for(int k=0; k<maxItems; k++){
- if(item_counter<items[i].length)
- list[list_counter][k]=items[i][item_counter];
- else
- list[list_counter][k]="";
- item_counter++;
- }
- //next column
- list_counter++;
- }
- }
-
- // makes outer and inner borders of table:
- ag.setColor(borderColor);
- ag.fillRect(window.getWidth() -noOfColumns*columnWidth - 4, legendHeight, (int)(noOfColumns*columnWidth), (int) Math.round((maxItems+0.5)*lineHeight));
-
- //draw columns
- for(int i=0; i<noOfColumns; i++){
- //draw column to draw onto
- legendHeight=startrowHeight;
- ag.setColor(backgroundColor);
- ag.updateColor();
- ag.fillRect(window.getWidth() -(noOfColumns-i)*columnWidth - 4 + 2, legendHeight + 2, columnWidth - 4, (int) Math.round((maxItems+0.5)*lineHeight)-4);
- ag.setColor(textColor);
- ag.updateColor();
- //draw item
- for(int j=0; j<maxItems; j++){
- legendHeight+=lineHeight;
- ag.drawString(list[i][j], window.getWidth() - (noOfColumns-i)*columnWidth + 2, legendHeight);
- }
- }
-
- //output warning if too many items
- if(doWarning){
- legendHeight+=lineHeight;
- //draw under columns
- ag.setColor(borderColor);
- ag.updateColor();
- ag.fillRect(window.getWidth() -90 - 4, legendHeight+4, 90, (int) Math.round(2.5*lineHeight));
- ag.setColor(backgroundColor);
- ag.updateColor();
- ag.fillRect(window.getWidth() -90 - 4 + 2, legendHeight +4+ 2, 90 - 4, (int) Math.round(2.5*lineHeight)-4);
- ag.setColor(textColor);
- ag.updateColor();
- legendHeight+=lineHeight;
- ag.drawString(" more items in", window.getWidth() - 90 + 2, legendHeight+4);
- legendHeight+=lineHeight;
- ag.drawString("event properties", window.getWidth() - 90 + 2, legendHeight+4);
- }
- lineHeight=origlineHeight;//reset line height
- }
-
- static String[] newList(String first, String[] rest){
- int counter = 2;//1 for title 1 for N/A if needed
- if(rest!=null) counter+=rest.length-1;//now don't need N/A
-
- String[] editedList=new String[counter];
- editedList[0]=first;
- if(rest!=null){
- System.arraycopy(rest, 0, editedList, 1, rest.length);
- }else{
- editedList[1]="N/A";
- }
-
- return editedList;
- }
-
- static void drawline(AWindow window, AGraphics ag, Point2D.Double from, Point2D.Double to)
- {
- from=window.calculateDisplay(from);
- to=window.calculateDisplay(to);
- ag.drawLine( from.x,from.y,to.x,to.y);
- }
-
- static void drawline(AWindow window, AGraphics ag, double fromX, double fromY, double toX, double toY)
- {
- Point2D.Double from= new Point2D.Double(fromX,fromY);
- Point2D.Double to= new Point2D.Double(toX,toY);
- drawline(window, ag, from, to);
- }
-
- //converts from energy into eta coords
- static void drawline(AWindow window, AGraphics ag, double fromX, double fromY, double toX, double toY, int etAxisMaximum)
- {
- fromY=-5-(1-AProjectionLegoPlot.getyz(window.getIndex()))*50*(fromY/etAxisMaximum)*0.9;
- toY=-5-(1-AProjectionLegoPlot.getyz(window.getIndex()))*50*(toY/etAxisMaximum)*0.9;
- Point2D.Double from= new Point2D.Double(fromX,fromY);
- Point2D.Double to= new Point2D.Double(toX,toY);
- drawline(window, ag, from, to);
- }
-
- static void drawstring(AWindow window, AGraphics ag, String str, double hereX, double hereY)
- {
- Point2D.Double here= new Point2D.Double(hereX,hereY);
- here=window.calculateDisplay(here);
- ag.drawString(str, here.x,here.y);
- }
-
- //converts from energy into eta coords
- static void drawstring(AWindow window, AGraphics ag, String str, double hereX, double hereY, int etAxisMaximum)
- {
- hereY=-5-(1-AProjectionLegoPlot.getyz(window.getIndex()))*50*(hereY/etAxisMaximum)*0.9;
- Point2D.Double here= new Point2D.Double(hereX,hereY);
- here=window.calculateDisplay(here);
- ag.drawString(str, here.x,here.y);
- }
-
- public static void drawGrid(AWindow window, AGraphics ag, double maxEt)
- {
- ag.setStroke(new BasicStroke(legoGridWidth)); //setting grid line width
- int width = window.getSize().width;
- int dpi = 72;
- // Set a scaling font size with window width (sqrt prevents text from going too small in the small window)
- int newFontSize = (int) Math.round(35.0 * Math.sqrt(width) / (double) dpi);
-
- //change the font size (reset at end)
- float originalFontSize= ag.g.getFont().getSize2D();
- Font f = new Font("SansSerif", Font.PLAIN, newFontSize);
- ag.setFont(f);
-
- // Draw the scale and labels on Et axis
- ag.setColor(Color.darkGray);
- if(backgroundColor.getBlue()+backgroundColor.getGreen()+backgroundColor.getRed() < 400)
- ag.setColor(Color.lightGray);
- ag.updateColor();
- int etAxisMaximum=(int) maxEt;//convert to int for use later on
- int etAxisScale = 10;//seperation of ticks in ET
- if (AProjectionLegoPlot.defaultScale ==1 )
- {
- etAxisScale=1;
- }
- else if (maxEt > 10.0)
- {
- //set scale to 0.1 of nearest hundred to maximum
- etAxisScale = 10 * ((int) Math.ceil(maxEt / 100.0));
- }
- else if (maxEt == 10.0)
- {
- etAxisScale = 5;
- }
- else if (maxEt < 10.0)
- {
- etAxisScale = 2;
- }
- double lowPhi=-360*AProjectionLegoPlot.getxz(window.getIndex());
- //lowPhi = 1;
- int ticksizex = 10;
- double ticksizey = 0.5;
- //Draw Et axis
- drawline(window,ag,lowPhi,0.0,lowPhi,etAxisMaximum, etAxisMaximum);
- //Draw the ticks
- for(int s = etAxisMaximum-etAxisScale; s >= 0.0; s-=etAxisScale)
- {
- drawline(window,ag,lowPhi, s,lowPhi + ticksizex,s, etAxisMaximum);
- if (AProjectionLegoPlot.defaultScale ==1 )
- drawstring(window,ag,"10^" + Integer.toString( s + AProjectionLegoPlot.minimumofLogScale ),lowPhi + 2*ticksizex,s,etAxisMaximum);
- else
- drawstring(window,ag,Integer.toString( s ),lowPhi + 2*ticksizex,s,etAxisMaximum);
- }
- // Draw the title on Et axis
- drawline(window,ag,lowPhi, etAxisMaximum,lowPhi + ticksizex,etAxisMaximum, etAxisMaximum);
- if (AProjectionLegoPlot.defaultScale ==1)
- drawstring(window,ag,"10^" + Integer.toString( etAxisMaximum + AProjectionLegoPlot.minimumofLogScale) + " ET (GeV)",lowPhi + 2*ticksizex,etAxisMaximum,etAxisMaximum);
- else if(AProjectionLegoPlot.defaultScale ==2)
- drawstring(window,ag,Integer.toString( etAxisMaximum ) + " ET (GeV)^1/2",lowPhi + 2*ticksizex,etAxisMaximum,etAxisMaximum);
- else
- drawstring(window,ag,Integer.toString( etAxisMaximum ) + " ET (GeV)",lowPhi + 2*ticksizex,etAxisMaximum,etAxisMaximum);
-
- // Draw a grid
- int t = -1;
- for (double p = 0.; p <= 1.; p += 1. / 8.)
- {
- // parallel to the right side
- drawline(window, ag, 360*p+lowPhi, -5.0, 360*p, 5.0);
- if (++t % 2 == 0)
- {
- // a tick
- drawline(window,ag,360*p,5.0,360*p,5.0+ticksizey);
- String str = new Integer(((int) (360. * p))).toString();
- drawstring(window,ag,str,360*p-7.0,5.0+2.0*Math.sqrt(ticksizey));
- }
- }
- //Draw the title on phi axis
- drawstring(window,ag,AMath.PHI,0.6*360,5.0+3.0*Math.sqrt(ticksizey));
-
- for (double e = 0.; e <= 1.; e += 1. / 10.)
- {
- // parallel to the bottom
- drawline(window, ag, lowPhi*(1-e), 10.0*e-5.0, 360.0+lowPhi*(1-e), 10.0*e-5.0);
- // a tick
- drawline(window, ag, lowPhi*(1-e), 10.0*e-5.0, lowPhi*(1-e), 10.0*e-5.0+ticksizey);
- String str = new Integer((int)Math.round(e*10)-5).toString();
- if (AProjectionLegoPlot.reverse)
- str = new Integer((int)Math.round(-e*10)+5).toString();
- drawstring(window,ag,str,lowPhi*(1-e)-20, 10.0*e-5.0+3.0*Math.sqrt(ticksizey));
- }
- //Draw the title on eta axis
- drawstring(window,ag,AMath.ETA,0.5*lowPhi-30,+5.0*Math.sqrt(ticksizey));
-
- //reset font size
- ag.g.setFont(ag.g.getFont().deriveFont(originalFontSize));
- }
-
- public static void drawJet(double et, double eta, double phi, Color color, AWindow window, AGraphics ag, double radius)
- {
- ag.setStroke(new BasicStroke(legoTowersWidth)); //Setting Lego Towers Width
- double x = (phi*360)/ AMath.TWO_PI;//x is phi converted from rad to deg
- int numPoints = 128;//points around circumference of circle
- double[][] hj = new double[2][numPoints];
- double[][] vj = new double[2][numPoints];
- int phiwrap = 0;
- double old_jetx = -1;
- int[] pj = new int[2];
- pj[0] = pj[1] = 0;
- for (int p = 0; p < numPoints; p++)
- {
- //add on fraction of diameter of circle in phi
- double jetx = x + radius*36 * Math.cos(AMath.TWO_PI * p / (numPoints - 1));
- if (jetx < 0)
- jetx += 360;
- if(jetx >= 360)
- jetx -= 360;
- if(old_jetx > 0)
- {
- double jetx_diff = Math.abs(jetx - old_jetx);
- if(jetx_diff > 360 / 2)
- phiwrap = (phiwrap + 1) % 2;
- }
- // remember the last jetx, to see if we've wrapped around next time
- old_jetx = jetx;
- double y = eta;
- if (AProjectionLegoPlot.reverse)
- y = -y;
- //add on fraction of diameter of circle in eta
- double jety = y + radius * Math.sin(AMath.TWO_PI * p / (numPoints - 1));
- jetx=AProjectionLegoPlot.adjustPhi(window,jetx,jety);//move phi value due to slant of eta axis
- Point2D.Double[] corners=window.getUserCorners();
- if(jetx < corners[0].x || jetx > corners[1].x || jety < corners[1].y || jety > corners[2].y)
- continue;//exits loop if not in limits of drawn plot
- hj[phiwrap][pj[phiwrap]] = jetx;
- vj[phiwrap][pj[phiwrap]] = jety;
- ++pj[phiwrap];
- }
-
- Point2D.Double p= new Point2D.Double(0,0);
- for(int i=0; i<pj[0]; i++)
- {
- p = window.calculateDisplay(hj[0][i],vj[0][i]);
- hj[0][i]=p.x;
- vj[0][i]=p.y;
- }
- p.x=0; p.y=0;
- for(int i=0; i<pj[1]; i++)
- {
- p = window.calculateDisplay(hj[1][i],vj[1][i]);
- hj[1][i]=p.x;
- vj[1][i]=p.y;
- }
- Stroke origStroke = ag.getGraphics2D().getStroke();
- boolean drawFrames = AColorMap.drawFrames();
- //if drawing frames this part draws the frame otherwise draws the fill
- ag.setStroke(new BasicStroke(3));
- if(drawFrames)
- ag.setColor(AProjectionLegoPlot.defaultColorMap[AColorMap.BK]);
- else
- ag.setColor(color);
-
- if (pj[0] > 2)
- {
- ag.drawPolygon(hj[0], vj[0], pj[0]);
- }
- if (pj[1] > 2)
- {
- ag.drawPolygon(hj[1], vj[1], pj[1]);
- }
-
- //this part will draw the fill color inside the frame if is not black otherwise already drawn
- if(drawFrames && !color.equals(AProjectionLegoPlot.defaultColorMap[AColorMap.BK]))
- {
- ag.setStroke(new BasicStroke(1));
- ag.setColor(color);
-
- if (pj[0] > 2)
- {
- ag.drawPolygon(hj[0], vj[0], pj[0]);
- }
- if (pj[1] > 2)
- {
- ag.drawPolygon(hj[1], vj[1], pj[1]);
- }
- }
-
- //reset stroke
- ag.setStroke(origStroke);
- }
-
- public static void drawJetText(double et, double eta, double phi, Color color, AWindow window, AGraphics ag, double radius)
- {
- double x = (phi*360)/ AMath.TWO_PI;//x is phi converted from rad to deg
- int numPoints = 128;//points around circumference of circle
- double[][] hj = new double[2][numPoints];
- double[][] vj = new double[2][numPoints];
- int phiwrap = 0;
- double old_jetx = -1;
- int[] pj = new int[2];
- pj[0] = pj[1] = 0;
- for (int p = 0; p < numPoints; p++)
- {
- //add on fraction of diameter of circle in phi
- double jetx = x + radius*36 * Math.cos(AMath.TWO_PI * p / (numPoints - 1));
- if (jetx < 0)
- jetx += 360;
- if(jetx >= 360)
- jetx -= 360;
- if(old_jetx > 0)
- {
- double jetx_diff = Math.abs(jetx - old_jetx);
- if(jetx_diff > 360 / 2)
- phiwrap = (phiwrap + 1) % 2;
- }
- // remember the last jetx, to see if we've wrapped around next time
- old_jetx = jetx;
- double y = eta;
- if (AProjectionLegoPlot.reverse)
- y = -y;
- //add on fraction of diameter of circle in eta
- double jety = y + radius * Math.sin(AMath.TWO_PI * p / (numPoints - 1));
- jetx=AProjectionLegoPlot.adjustPhi(window,jetx,jety);//move phi value due to slant of eta axis
- Point2D.Double[] corners=window.getUserCorners();
- if(jetx < corners[0].x || jetx > corners[1].x || jety < corners[1].y || jety > corners[2].y)
- continue;//exits loop if not in limits of drawn plot
- hj[phiwrap][pj[phiwrap]] = jetx;
- vj[phiwrap][pj[phiwrap]] = jety;
- ++pj[phiwrap];
- }
-
- Point2D.Double p= new Point2D.Double(0,0);
- for(int i=0; i<pj[0]; i++)
- {
- p = window.calculateDisplay(hj[0][i],vj[0][i]);
- hj[0][i]=p.x;
- vj[0][i]=p.y;
- }
-
- //draw the jet et as text
- String s = Double.toString(et);
- int dot = s.indexOf('.');
- String ss = s.substring(0, dot+0);
- float originalFontSize= ag.g.getFont().getSize2D();
- float newFontSize= (float) 25.;
- ag.g.setFont(ag.g.getFont().deriveFont(newFontSize));
- ag.g.setColor(color);
- ag.drawString(" "+ss, hj[0][0], vj[0][0]);
- ag.g.setFont(ag.g.getFont().deriveFont(originalFontSize));
- }
-
- public static void drawMissEt(AWindow window, AGraphics ag, int phi, double pt, Color color, double maxEt)
- {
- //color
- ag.setColor(color);
-
- drawBox(window, ag, phi, 0, AProjectionLegoPlot.DRAW_MET, 0, pt, maxEt, 0.5);
-
- double phibinsize=360.0/AProjectionLegoPlot.nPhiCells;
- double[] h = new double[4];
- double[] v = new double[4];
- double etaChange = 0.5;
- for(double etaStart=-5.0; etaStart<5.0; etaStart+=2*etaChange)
- {
- v[0] = etaStart;
- h[0] = AProjectionLegoPlot.adjustPhi(window,phi*phibinsize,v[0]);
- v[1] = v[0]+etaChange;
- h[1] = AProjectionLegoPlot.adjustPhi(window,phi*phibinsize,v[1]);
- v[2] = v[1];
- h[2] = h[1] + phibinsize;
- v[3] = v[0];
- h[3] = h[0] + phibinsize;
- //convert to window coords
- Point2D.Double p= new Point2D.Double(0,0);
- for(int i=0; i<4; i++)
- {
- p = window.calculateDisplay(h[i],v[i]);
- h[i]=p.x;
- v[i]=p.y;
- }
- //draw
- ag.fillPolygon(h, v, 4);
- }
- }
-
- public static void drawBox(AWindow window, AGraphics ag, int phi, int eta, int colouring, double et1, double et2, double maxEt, double boxsize)
- {
- Color drawingColor;
- //if colouring < 0 ->AOD object, otherwise its cells
- switch(colouring){
- case AProjectionLegoPlot.DRAW_MET:
- drawingColor=AProjectionLegoPlot.defaultColorMap[parameterStore.get("ETMis", "Constant").getI()];
- break;
- case AProjectionLegoPlot.DRAW_MUON:
- drawingColor=AProjectionLegoPlot.defaultColorMap[parameterStore.get("Muon", "Constant").getI()];
- break;
- case AProjectionLegoPlot.DRAW_ELECTRON:
- drawingColor=AProjectionLegoPlot.defaultColorMap[parameterStore.get("Electron", "Constant").getI()];
- break;
- case AProjectionLegoPlot.DRAW_PHOTON:
- drawingColor=AProjectionLegoPlot.defaultColorMap[parameterStore.get("Photon", "Constant").getI()];
- break;
- case AProjectionLegoPlot.DRAW_CLUSTER:
- drawingColor=AProjectionLegoPlot.defaultColorMap[parameterStore.get("Cluster", "Constant").getI()];
- break;
- case AProjectionLegoPlot.DRAW_COMPOSITEPARTICLE:
- drawingColor=AProjectionLegoPlot.defaultColorMap[parameterStore.get("CompositeParticle", "Constant").getI()];
- break;
- case AProjectionLegoPlot.DRAW_BJET:
- drawingColor=AProjectionLegoPlot.defaultColorMap[parameterStore.get("BJet", "Constant").getI()];
- break;
- case AProjectionLegoPlot.DRAW_TAUJET:
- drawingColor=AProjectionLegoPlot.defaultColorMap[parameterStore.get("TauJet", "Constant").getI()];
- break;
- case AProjectionLegoPlot.DRAW_JET:
- drawingColor=AProjectionLegoPlot.defaultColorMap[parameterStore.get("Jet", "Constant").getI()];
- break;
- default: drawingColor=AProjectionLegoPlot.caloColorMap[colouring];
- }
-
- int object = -colouring;//should be positive for "objects" and negative for calo cells
-
- //now check transparency option
- //result is transparent if colouring is < 0
- switch(parameterStore.get("LegoPlot", "TowerOutlines").getI()){
- //AOD: colouring is already correct
- case 0: break;
- //cells: reverse so now AOD solid
- case 1: colouring*=-1; break;
- //both
- case 2: colouring=-1; break;
- //neither
- case 3: colouring=1; break;
- }
- double phibinsize=360.0/AProjectionLegoPlot.nPhiCells;
- double etabinsize=10.0/AProjectionLegoPlot.nEtaCells;
- double x = phi*phibinsize;//x is real phi position
- double y = eta*etabinsize-5;//y is real eta position
- if (object>0) {phibinsize=360./64.; etabinsize=10./100.;}
- double x1 = AProjectionLegoPlot.adjustPhi(window,x, y);//x1 is real phi position
- double x2 = AProjectionLegoPlot.adjustPhi(window,x, y-etabinsize);//shifted x due to eta bin size
- double[][] h = new double[3][4];
- double[][] v = new double[3][4];
- //adjust the values of the energies
- et1=(1-AProjectionLegoPlot.getyz(window.getIndex()))*50*(et1/maxEt)*0.9;
- et2=et1+(1-AProjectionLegoPlot.getyz(window.getIndex()))*50*(et2/maxEt)*0.9;
-
- double phishift = boxsize * (phibinsize/2); //to center towers with recpt eta-phi coordinates x1 and x2
- double etashift = boxsize * ((etabinsize)/2);
-
- //front
- h[0][0] = x1 - phishift;
- v[0][0] = y-et1 - etashift; // (bottom front)
- h[0][1] = x1 - phishift;
- v[0][1] = y-et2 - etashift;
- h[0][2] = x1 + phishift;
- v[0][2] = y-et2 - etashift;
- h[0][3] = x1 + phishift;
- v[0][3] = y-et1 - etashift;
- //top
- h[1][0] = x2 - phishift;
- v[1][0] = y-et2- etashift-etashift; //SHIFT to make top squared
- h[1][1] = x1 - phishift;
- v[1][1] = y-et2 - etashift;
- h[1][2] = x1 + phishift;
- v[1][2] = y-et2 - etashift;
- h[1][3] = x2 + phishift;
- v[1][3] = y-et2- etashift-etashift; //SHIFT to make top squared
- //side
- h[2][0] = x2 - (phishift);
- v[2][0] = y-(et2)- etashift -etashift; // top back SHIFT to make top squared
- h[2][1] = x1 - phishift;
- v[2][1] = y-et2 - etashift; // top front
- h[2][2] = x1 - phishift;
- v[2][2] = y-(et1) - etashift; // bottom front
- h[2][3] = x2 - (phishift);
- v[2][3] = y-et1 -(etashift); // bottom back
-
-
- //convert to window coords
- Point2D.Double p= new Point2D.Double(0,0);
- for(int i=0; i<4; i++)
- {
- p = window.calculateDisplay(h[0][i],v[0][i]);
- h[0][i]=p.x;
- v[0][i]=p.y;
- p.x=0; p.y=0;
- p = window.calculateDisplay(h[1][i],v[1][i]);
- h[1][i]=p.x;
- v[1][i]=p.y;
- p.x=0; p.y=0;
- p = window.calculateDisplay(h[2][i],v[2][i]);
- h[2][i]=p.x;
- v[2][i]=p.y;
- }
-
- //draw sides
- ag.setColor(drawingColor);
- if (colouring>=0)
- ag.fillPolygon(h[2], v[2], 4);
- else if(colouring == AProjectionLegoPlot.DRAW_JET){
- ag.fillPolygon(h[2], v[2], 4, (float)APar.instance().get("Jet","AlphaJets").getD()); //f specifies transparency fraction
- }
- else
- ag.fillPolygon(h[2], v[2], 4, 0.8f); //f specifies transparency fraction
-
- //colour front
- ag.setColor(drawingColor);
- //draw front
- if (colouring>=0)
- ag.fillPolygon(h[0], v[0], 4);
- else if(colouring == AProjectionLegoPlot.DRAW_JET){
- ag.fillPolygon(h[0], v[0], 4, (float)APar.instance().get("Jet","AlphaJets").getD()); //f specifies transparency fraction
- }
- else
- ag.fillPolygon(h[0], v[0], 4, 0.8f); //f specifies transparency fraction
-
- //colour top
- Color ddc = drawingColor.darker().darker();
- ag.setColor(new Color(ddc.getRed(),ddc.getGreen(),ddc.getBlue()));
- //draw top
- if (colouring>=0)
- ag.fillPolygon(h[1], v[1], 4);
- else if(colouring == AProjectionLegoPlot.DRAW_JET){
- ag.fillPolygon(h[1], v[1], 4, (float)APar.instance().get("Jet","AlphaJets").getD()); //f specifies transparency fraction
- }
- else
- ag.fillPolygon(h[1], v[1], 4, 0.8f); //f specifies transparency fraction
-
- }
-
- //draw box method that can be used when not all the towers of certain object have assigned the same colour - the parameter color specifies the i color component
- public static void drawBox(AWindow window, AGraphics ag, int phi, int eta, int colouring, Color color, double et1, double et2, double maxEt, double boxsize)
- {
- Color drawingColor;
- switch(colouring){
- case AProjectionLegoPlot.DRAW_MET:
- drawingColor= color;
- break;
- case AProjectionLegoPlot.DRAW_MUON:
- drawingColor= color;
- break;
- case AProjectionLegoPlot.DRAW_ELECTRON:
- drawingColor= color;
- break;
- case AProjectionLegoPlot.DRAW_PHOTON:
- drawingColor= color;
- break;
- case AProjectionLegoPlot.DRAW_CLUSTER:
- drawingColor= color;
- break;
- case AProjectionLegoPlot.DRAW_COMPOSITEPARTICLE:
- drawingColor= color;
- break;
- case AProjectionLegoPlot.DRAW_BJET:
- drawingColor= color;
- break;
- case AProjectionLegoPlot.DRAW_TAUJET:
- drawingColor= color;
- break;
- case AProjectionLegoPlot.DRAW_JET:
- drawingColor= color;
- break;
- default: drawingColor=AProjectionLegoPlot.caloColorMap[colouring];
- }
-
- int object = -colouring;//should be positive for "objects" and negative for calo cells
-
- //now check transparency option
- //result is transparent if colouring is < 0
- switch(parameterStore.get("LegoPlot", "TowerOutlines").getI()){
- //AOD: colouring is already correct
- case 0: break;
- //cells: reverse so now AOD solid
- case 1: colouring*=-1; break;
- //both
- case 2: colouring=-1; break;
- //neither
- case 3: colouring=1; break;
- }
- double phibinsize=360.0/AProjectionLegoPlot.nPhiCells;
- double etabinsize=10.0/AProjectionLegoPlot.nEtaCells;
- double x = phi*phibinsize;//x is real phi position
- double y = eta*etabinsize-5;//y is real eta position
- if (object>0) {phibinsize=360./64.; etabinsize=10./100.;}
- double x1 = AProjectionLegoPlot.adjustPhi(window,x, y);//x1 is real phi position
- double x2 = AProjectionLegoPlot.adjustPhi(window,x, y-etabinsize);//shifted x due to eta bin size
- double[][] h = new double[3][4];
- double[][] v = new double[3][4];
- //adjust the values of the energies
- et1=(1-AProjectionLegoPlot.getyz(window.getIndex()))*50*(et1/maxEt)*0.9;
- et2=et1+(1-AProjectionLegoPlot.getyz(window.getIndex()))*50*(et2/maxEt)*0.9;
-
- double phishift = boxsize * (phibinsize/2); //to center towers with recpt eta-phi coordinates x1 and x2
- double etashift = boxsize * ((etabinsize)/2);
-
- //front
- h[0][0] = x1 - phishift;
- v[0][0] = y-et1 - etashift; // (bottom front)
- h[0][1] = x1 - phishift;
- v[0][1] = y-et2 - etashift;
- h[0][2] = x1 + phishift;
- v[0][2] = y-et2 - etashift;
- h[0][3] = x1 + phishift;
- v[0][3] = y-et1 - etashift;
- //top
- h[1][0] = x2 - phishift;
- v[1][0] = y-et2- etashift-etashift; //SHIFT to make top squared
- h[1][1] = x1 - phishift;
- v[1][1] = y-et2 - etashift;
- h[1][2] = x1 + phishift;
- v[1][2] = y-et2 - etashift;
- h[1][3] = x2 + phishift;
- v[1][3] = y-et2- etashift-etashift; //SHIFT to make top squared
- //side
- h[2][0] = x2 - (phishift);
- v[2][0] = y-(et2)- etashift -etashift; // top back SHIFT to make top squared
- h[2][1] = x1 - phishift;
- v[2][1] = y-et2 - etashift; // top front
- h[2][2] = x1 - phishift;
- v[2][2] = y-(et1) - etashift; // bottom front
- h[2][3] = x2 - (phishift);
- v[2][3] = y-et1 -(etashift); // bottom back
-
- //convert to window coords
- Point2D.Double p= new Point2D.Double(0,0);
- for(int i=0; i<4; i++)
- {
- p = window.calculateDisplay(h[0][i],v[0][i]);
- h[0][i]=p.x;
- v[0][i]=p.y;
- p.x=0; p.y=0;
- p = window.calculateDisplay(h[1][i],v[1][i]);
- h[1][i]=p.x;
- v[1][i]=p.y;
- p.x=0; p.y=0;
- p = window.calculateDisplay(h[2][i],v[2][i]);
- h[2][i]=p.x;
- v[2][i]=p.y;
- }
-
- //draw sides
- ag.setColor(drawingColor);
- if (colouring>=0)
- ag.fillPolygon(h[2], v[2], 4);
- else if(colouring == AProjectionLegoPlot.DRAW_JET){
- ag.fillPolygon(h[2], v[2], 4, (float)APar.instance().get("Jet","AlphaJets").getD());
- }else if (colouring == AProjectionLegoPlot.DRAW_BJET) {
- ag.fillPolygon(h[2], v[2], 4, 0.4f);
- }else
- ag.fillPolygon(h[2], v[2], 4, 0.8f); //f specifies transparency fraction
-
- //colour front
- ag.setColor(drawingColor);
- //draw front
- if (colouring>=0)
- ag.fillPolygon(h[0], v[0], 4);
- else if(colouring == AProjectionLegoPlot.DRAW_JET){
- ag.fillPolygon(h[0], v[0], 4, (float)APar.instance().get("Jet","AlphaJets").getD());
- }else if(colouring == AProjectionLegoPlot.DRAW_BJET) {
- ag.fillPolygon(h[0], v[0], 4, 0.4f);
- }else
- ag.fillPolygon(h[0], v[0], 4, 0.8f); //f specifies transparency fraction
-
- //colour top
- Color ddc = drawingColor.darker().darker();
- ag.setColor(new Color(ddc.getRed(),ddc.getGreen(),ddc.getBlue()));
- //draw top
- if (colouring>=0)
- ag.fillPolygon(h[1], v[1], 4);
- else if(colouring == AProjectionLegoPlot.DRAW_JET){
- ag.fillPolygon(h[1], v[1], 4, (float)APar.instance().get("Jet","AlphaJets").getD()); //f specifies transparency fraction
- }else if(colouring == AProjectionLegoPlot.DRAW_BJET) {
- ag.fillPolygon(h[1], v[1], 4, 0.4f); //f specifies transparency fraction
- }
- else
- ag.fillPolygon(h[1], v[1], 4, 0.8f); //f specifies transparency fraction
- }
-}
\ No newline at end of file
diff --git a/graphics/AtlantisJava/src/atlantis/graphics/APickingGraphics2D.java b/graphics/AtlantisJava/src/atlantis/graphics/APickingGraphics2D.java
deleted file mode 100755
index 9757b84ccdd..00000000000
--- a/graphics/AtlantisJava/src/atlantis/graphics/APickingGraphics2D.java
+++ /dev/null
@@ -1,432 +0,0 @@
-package atlantis.graphics;
-
-import java.awt.Graphics;
-import java.awt.Point;
-import java.awt.Rectangle;
-import java.awt.Shape;
-import java.awt.event.ActionEvent;
-import java.awt.event.ActionListener;
-import java.awt.geom.PathIterator;
-import java.util.ArrayList;
-
-import javax.swing.JPopupMenu;
-
-import atlantis.canvas.ACanvas;
-import atlantis.canvas.AWindow;
-import atlantis.event.AData;
-import atlantis.data.ATrackData;
-import atlantis.data.ATrackResidualData;
-import atlantis.list.AList;
-import atlantis.output.ALogInterface;
-import atlantis.output.AOutput;
-import atlantis.projection.AProjectionTrackResidual;
-import atlantis.projection.AProjectionsManager;
-import atlantis.utils.ALogger;
-
-/**
- * A very limited PostScript graphics context for output of Atlantis functions
- * Any call to a none implemented will throw an exception
- */
-
-public class APickingGraphics2D extends ATemplateGraphics2D
-{
- private static ALogger logger = ALogger.getLogger(APickingGraphics2D.class);
-
- public final static int PICK_HITS_AND_TRACKS = 0;
- public final static int PICK_DETECTORS = 1;
- public final static int MOVE = 2;
- public final static int PICK_RESIDUAL = 3;
-
- public static int mode;
-
- static AData pickedData = null;
- static ATrackResidualData pickedResidual = null;
- static ArrayList pickedDetectors;
- static int pickedIndex;
-
- public static Point pickedPoint;
- static double minDist;
- public static double pickedH;
- public static double pickedV;
-
- private static JPopupMenu residualPopupMenu;
- private static final String SHOW_RESIDUALS_X = "Show Residual X";
- private static final String SHOW_PULLS_X = "Show Pull X";
-
- static
- {
- residualPopupMenu = new JPopupMenu();
- ActionListener residualPopupActionListener =
- new APickingGraphics2D.ResidualPopupMenuActionListener();
- residualPopupMenu.add(SHOW_RESIDUALS_X).addActionListener(residualPopupActionListener);
- residualPopupMenu.add(SHOW_PULLS_X).addActionListener(residualPopupActionListener);
- }
-
- static class ResidualPopupMenuActionListener implements ActionListener
- {
- public void actionPerformed(ActionEvent e)
- {
- String action = e.getActionCommand();
-
- // Use window "B" to show track residual
- String residualWindowName = "B";
- if(ACanvas.getCanvas().isValidWindowName(residualWindowName))
- {
- AWindow residualWindow = ACanvas.getCanvas().getWindow(residualWindowName);
- AProjectionTrackResidual residualProj =
- (AProjectionTrackResidual) AProjectionsManager.getProjection("TrackResidual");
- if (action.equals(SHOW_RESIDUALS_X))
- residualProj.setResidualType(ATrackResidualData.RESIDUAL_X);
- else if (action.equals(SHOW_PULLS_X))
- residualProj.setResidualType(ATrackResidualData.PULL_X);
-
- // when this action is activated, the pickedData must be a track
- ATrackData trackData = (ATrackData) pickedData;
- residualProj.setResidual(trackData.getTrackResidual(pickedIndex));
- ACanvas.getCanvas().moveToFrontWindow(residualWindowName);
- residualWindow.setProjection(residualProj);
- }
- else
- AOutput.append("\nWindow " + residualWindowName + " is not available in current layout"
- + "\n", ALogInterface.WARNING);
- }
- }
-
- public APickingGraphics2D(Rectangle bounds, int m, Point p)
- {
- super(bounds);
- mode = m;
- pickedPoint = p;
- minDist = 10000000.;
- if (mode != MOVE)
- {
- pickedData = null;
- pickedIndex = -1;
- }
- if (pickedDetectors == null)
- {
- pickedDetectors = new ArrayList();
- }
- else
- {
- pickedDetectors.clear();
- }
- }
-
- APickingGraphics2D(APickingGraphics2D a)
- {
- super(a);
- }
-
- public Graphics create()
- {
- return new APickingGraphics2D(this);
- }
-
- public void drawLine(double h0, double v0, double h1, double v1)
- {
- if (mode == PICK_DETECTORS)
- return;
- if (AGraphics.currentData == null)
- return;
- if (mode == MOVE &&
- !(AGraphics.currentData == pickedData && AGraphics.currentIndex == pickedIndex))
- return;
- double hPicked = pickedPoint.getX();
- double vPicked = pickedPoint.getY();
- // treat first two endpoints
- double delH = h0 - hPicked;
- double delV = v0 - vPicked;
- double dist = delH * delH + delV * delV;
-
- if (dist < minDist)
- {
- minDist = dist;
- setPicked(h0, v0);
- }
- delH = h1 - hPicked;
- delV = v1 - vPicked;
- dist = delH * delH + delV * delV;
- if (dist < minDist)
- {
- minDist = dist;
- setPicked(h1, v1);
- }
- // now treat point within line being closest
- double h10 = h1 - h0;
- double v10 = v1 - v0;
- double hp0 = hPicked - h0;
- double vp0 = vPicked - v0;
- double size = h10 * h10 + v10 * v10;
-
- if (size > 0.0)
- {
- double u = (h10 * hp0 + v10 * vp0) / size;
-
- if (u > 0. && u < 1.)
- {
- double hClosest = h0 + u * h10;
- double vClosest = v0 + u * v10;
-
- delH = hClosest - hPicked;
- delV = vClosest - vPicked;
- dist = delH * delH + delV * delV;
- if (dist < minDist)
- {
- minDist = dist;
- setPicked(hClosest, vClosest);
- }
- }
- }
- }
-
- public void fillRect(int h, int v, int width, int height)
- {
- if (mode == PICK_DETECTORS && AGraphics.currentDetector != null)
- {
- // Collect the different detector names.
- String info = AGraphics.currentDetector.getInfo(AGraphics.currentIndex);
- if (!pickedDetectors.contains(info))
- {
- pickedDetectors.add(info);
- }
- }
- double dh = width / 2.;
- double dv = height / 2.;
- drawLine(h - dh, v - dv, h + dh, v - dv);
- drawLine(h + dh, v - dv, h + dh, v + dv);
- drawLine(h + dh, v + dv, h - dh, v + dv);
- drawLine(h - dh, v + dv, h - dh, v - dv);
- }
-
- public void draw(Shape s)
- {
- PathIterator path = s.getPathIterator(null);
- double[] coords = new double[6];
- double h0 = 0.;
- double v0 = 0.;
- double h1 = 0.;
- double v1 = 0.;
- double hInit = 0.;
- double vInit = 0.;
- while (!path.isDone())
- {
- int segType = path.currentSegment(coords);
-
- switch (segType)
- {
- case PathIterator.SEG_MOVETO:
- h0 = coords[0];
- v0 = coords[1];
- hInit = h0;
- vInit = v0;
- break;
-
- case PathIterator.SEG_LINETO:
- case PathIterator.SEG_CUBICTO:
- h1 = coords[0];
- v1 = coords[1];
- drawLine(h0, v0, h1, v1);
- h0 = h1;
- v0 = v1;
- break;
-
- case PathIterator.SEG_CLOSE:
- drawLine(h0, v0, hInit, vInit);
- break;
-
- default:
- logger.error(" Error unknown segment type");
- break;
- }
- path.next();
- }
- }
-
- public void fill(Shape s)
- {
- if (mode == PICK_DETECTORS && AGraphics.currentDetector != null)
- {
- double[][] hv = getPolygon(s);
- if (AGraphics.isPointInside(hv[0], hv[1], hv[0].length, pickedPoint.getX(), pickedPoint.getY()))
- {
- // Collect the different detector names.
- String info = AGraphics.currentDetector.getInfo(AGraphics.currentIndex);
- if (!pickedDetectors.contains(info))
- {
- pickedDetectors.add(info);
- }
- }
- }
- else
- {
- draw(s);
- }
- }
-
- public double[][] getPolygon(Shape s)
- {
- double[] coords = new double[6];
-
- int numPoints = 0;
- PathIterator path = s.getPathIterator(null);
- while (!path.isDone())
- {
- int segType = path.currentSegment(coords);
- switch (segType)
- {
- case PathIterator.SEG_MOVETO:
- numPoints++;
- break;
-
- case PathIterator.SEG_LINETO:
- case PathIterator.SEG_CUBICTO:
- numPoints++;
- break;
-
- case PathIterator.SEG_CLOSE:
- // numPoints++;
- break;
-
- default:
- break;
- }
- path.next();
- }
- double[][] hv = new double[2][numPoints];
- numPoints = 0;
- path = s.getPathIterator(null);
- while (!path.isDone())
- {
- int segType = path.currentSegment(coords);
-
- switch (segType)
- {
- case PathIterator.SEG_MOVETO:
- hv[0][numPoints] = coords[0];
- hv[1][numPoints] = coords[1];
- numPoints++;
- break;
-
- case PathIterator.SEG_LINETO:
- case PathIterator.SEG_CUBICTO:
- hv[0][numPoints] = coords[0];
- hv[1][numPoints] = coords[1];
- numPoints++;
- break;
-
- case PathIterator.SEG_CLOSE:
- // drawLine(h0,v0,hInit,vInit);
- break;
-
- default:
- logger.error(" Error unknown segment type");
- break;
- }
- path.next();
- }
- return hv;
- }
-
- private static void setPicked(double h, double v)
- {
- pickedData = AGraphics.currentData;
- pickedIndex = AGraphics.currentIndex;
- pickedH = h;
- pickedV = v;
- }
-
- public static AData getPickedData()
- {
- return pickedData;
-
- } // getPickedData()
-
- public static ATrackResidualData getPickedResidual()
- {
- return pickedResidual;
- }
-
- public static int getPickedH()
- {
- return (int) Math.rint(pickedH);
- }
-
- public static int getPickedV()
- {
- return (int) Math.rint(pickedV);
- }
-
- public static AList getPickedHit()
- {
- if (pickedData != null)
- return new AList(pickedData, pickedIndex);
- else
- return null;
- }
-
- public static Integer getPickedHitIndex()
- {
- if (pickedData != null)
- {
- return new Integer(pickedIndex);
- }
- else
- {
- return null;
- }
- }
-
- public static void setPicked(AData data, int index)
- {
- pickedData = data;
- pickedIndex = index;
- }
-
- public static void setPicked(ATrackResidualData data)
- {
- pickedResidual = data;
- }
-
- public static void printPicked()
- {
- if(mode == APickingGraphics2D.PICK_RESIDUAL)
- {
- AOutput.alwaysAppend("\n\n" + pickedResidual.getHitInfo(), ALogInterface.PICK);
- mode = APickingGraphics2D.PICK_HITS_AND_TRACKS;
- }
- else
- {
- if (pickedData != null)
- {
- AOutput.alwaysAppend("\n\n" + pickedData.getHitInfo(pickedIndex), ALogInterface.PICK);
- }
- else if (pickedDetectors != null && pickedDetectors.size() > 0)
- {
- AOutput.alwaysAppend("\n\nYou are inside:\n", ALogInterface.PICK);
- for (int i = 0; i < pickedDetectors.size(); i++)
- {
- AOutput.alwaysAppend(" " + pickedDetectors.get(i) + "\n", ALogInterface.PICK);
- }
- }
- }
- }
-
- /**
- * Method is called after pick+n (navigate = show data associations)
- */
- public static void navigatePicked()
- {
- if(pickedData != null)
- {
- String navigateInfo = pickedData.navigate(pickedIndex);
- AOutput.alwaysAppend("\n" + navigateInfo + "\n", ALogInterface.PICK);
- }
- }
-
- public static void showTrackResiduals(AWindow window, int x, int y)
- {
- APickingGraphics2D.residualPopupMenu.show(window, x, y);
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/graphics/APixelGraphics.java b/graphics/AtlantisJava/src/atlantis/graphics/APixelGraphics.java
deleted file mode 100755
index 44a5136d93c..00000000000
--- a/graphics/AtlantisJava/src/atlantis/graphics/APixelGraphics.java
+++ /dev/null
@@ -1,304 +0,0 @@
-package atlantis.graphics;
-
-import java.awt.Graphics;
-import java.awt.Rectangle;
-import java.awt.geom.GeneralPath;
-
-/**
- * This graphics is used for drawing on the screen and making pixel based
- * images. In the end all drawing is done in pixels(integers). Picking is
- * implemented here. Provide high quality pixel based drawing of thin frames
- * around lines and areas, in the method draw.
- */
-// When drawing borders could speed things up by only drawing what is needed
-public class APixelGraphics extends AGraphics
-{
- APixelGraphics(Graphics g)
- {
- super(g);
- }
-
- public void setLineWidth(int lineWidth)
- {}
-
- public void drawLine(double h0, double v0, double h1, double v1)
- {
- if (clipper.isLineWithin(h0, v0, h1, v1))
- {
- double[][] hvClipped = clipper.getHV();
- double h0Clipped = hvClipped[0][0];
- double v0Clipped = hvClipped[1][0];
- double h1Clipped = hvClipped[0][1];
- double v1Clipped = hvClipped[1][1];
- if (lineWidth == 1)
- {
- updateColor();
- g.drawLine((int) h0Clipped, (int) v0Clipped, (int) h1Clipped, (int) v1Clipped);
- }
- else
- {
- drawThickLine(h0Clipped, v0Clipped, h1Clipped, v1Clipped);
- }
- }
-
- } // drawLine()
-
- private void drawThickLine(double h0, double v0, double h1, double v1)
- {
- // Drawing thick line this way is quicker than using setLine width
- // correct for Postscipt
- // pretty good for pixel device (assume java line drawing is Bresenhams
- // or similar)
- double h = Math.abs(h1 - h0);
- double v = Math.abs(v1 - v0);
-
- for (int i = 0; i < lineWidth; ++i)
- {
- // 101/50 to avoid rounding toward 0 problem
- int d = i + (101 - lineWidth) / 2 - 50;
-
- int h0new = (int) h0;
- int v0new = (int) v0;
- int h1new = (int) h1;
- int v1new = (int) v1;
-
- if (h > v)
- {
- v0new += d;
- v1new += d;
- }
- else
- {
- h0new += d;
- h1new += d;
- }
-
- // Caution!!!
- // When point (h0, v0) or (h1, v1) is close to the border of the
- // drawing area, after +/- d, the (h0new, v0new) or (h1new, v1new)
- // might beyond the valid value range, which will cause an
- // IndexArrayOutOfBound error thrown from g.drawLine method.
- if(clipper.isLineWithin(h0new, v0new, h1new, v1new))
- {
- updateColor();
- h0new = (int) clipper.getH0();
- v0new = (int) clipper.getV0();
- h1new = (int) clipper.getH1();
- v1new = (int) clipper.getV1();
- g.drawLine(h0new, v0new, h1new, v1new);
- }
- }
- }
-
- public void drawSmoothLine(double h0, double v0, double ch0, double cv0,
- double ch1, double cv1, double h1, double v1)
- {
- GeneralPath curve = new GeneralPath();
- for (int i=0; i<lineWidth; ++i) {
- // 101/50 to avoid rounding toward 0 problem
- int d = i + (101 - lineWidth) / 2 - 50;
- float dh, dv;
-
- if (Math.abs(h1 - h0) > Math.abs(v1 - v0)) {
- dh = 0;
- dv = d;
- } else {
- dh = d;
- dv = 0;
- }
-
- curve.moveTo((float)h0+dh, (float)v0+dv);
- curve.curveTo((float)ch0+dh, (float)cv0+dv, (float)ch1+dh, (float)cv1+dv, (float)h1+dh, (float)v1+dv);
- }
- updateColor();
- g.draw(curve);
- }
-
- protected void fillRect(double h, double v, int width, int height)
- {
- updateColor();
- g.fillRect((int) (h - width / 2.), (int) (v - height / 2.), width, height);
- }
-
- @Override
- protected void fillOval(double h, double v, int width, int height) {
-
- g.fillOval((int) (h - width / 2.), (int) (v - height / 2.), width, height);
- g.drawOval((int) (h - width / 2.), (int) (v - height / 2.), width, height);
- }
-
- public void drawPolygon(double[] h, double[] v, int numPoints)
- {
- int type = getContainmentType(h, v, numPoints, POLYGON);
-
- if (type == FULLY_INSIDE || type == INTERSECTS)
- {
- for (int i = 0; i < numPoints - 1; ++i)
- {
- drawLine(h[i], v[i], h[i + 1], v[i + 1]);
- }
- if (numPoints > 1)
- {
- drawLine(h[numPoints - 1], v[numPoints - 1], h[0], v[0]);
- }
- }
- } // drawPolygon()
-
- public void drawPolyline(double[] h, double[] v, int numPoints)
- {
- int type = getContainmentType(h, v, numPoints, POLYLINE);
- if (type == FULLY_INSIDE || type == INTERSECTS)
- {
- // Some code here to simplify polylines by only drawing segments
- // at least 1 pixel long, speeds up the ellipses for recvertices
- // quite a lot since they're often very small but have thousands
- // of line segments - AD
- double lasth = 0.0;
- double lastv = 0.0;
-
- for (int i = 0; i < numPoints - 1; ++i) {
- if (i == 0) {
- // Always draw something
- lasth = h[1];
- lastv = v[1];
- drawLine(h[0], v[0], h[1], v[1]);
- }
-
- double diffh = h[i+1] - lasth;
- double diffv = v[i+1] - lastv;
-
- if ((diffh*diffh + diffv*diffv) > 1.0) {
- drawLine(lasth, lastv, h[i + 1], v[i + 1]);
- lasth = h[i+1];
- lastv = v[i+1];
- }
- }
- }
- } // drawPolyline()
-
- public void drawDottedPolyline(double[] h, double[] v, int numPoints)
- {
- int type = getContainmentType(h, v, numPoints, POLYLINE);
- if (type == FULLY_INSIDE || type == INTERSECTS)
- {
- for (int i = 0; i < numPoints - 1; i += 2)
- drawLine(h[i], v[i], h[i + 1], v[i + 1]);
- }
- } // drawDottedPolyline()
-
- public void drawSmoothPolyline(double[] h0, double[] v0, int numPoints0) {
-
- // For curves having less than 3 points and for picking use the normal polyline.
- if (numPoints0 < 3 || g instanceof APickingGraphics2D) {
- drawPolyline(h0, v0, numPoints0);
- return;
- }
-
- int type = getContainmentType(h0, v0, numPoints0, POLYLINE);
- if (type == FULLY_INSIDE || type == INTERSECTS) {
-
- int numPoints = 3 * numPoints0 - 2;
-
- // Add the control points to the array, at 1/3 and 2/3
- // between the already existing points.
- float[] h = new float[numPoints];
- float[] v = new float[numPoints];
- for (int i=0; i<numPoints; i++) {
-
- switch (i%3) {
- case 0:
- // One of the fixed points.
- h[i] = (float)h0[i/3];
- v[i] = (float)v0[i/3];
- break;
- case 1:
- // First control point.
- h[i] = (float)(2./3. * h0[i/3] + 1./3. * h0[i/3+1]);
- v[i] = (float)(2./3. * v0[i/3] + 1./3. * v0[i/3+1]);
- break;
- case 2:
- // Second control point.
- h[i] = (float)(1./3. * h0[i/3] + 2./3. * h0[i/3+1]);
- v[i] = (float)(1./3. * v0[i/3] + 2./3. * v0[i/3+1]);
- break;
- }
- }
-
- // Now we have a normal polyline (straight line segments between fixed points),
- // but as a cubic Bezier curve. All we need to do to make it smooth is to move
- // the control points away from the curve, in such a way that [control point 2] -
- // [fixed point] - [control point 1] is a straight line for every fixed point.
- // We do this by averaging the angles of the line segments on either side of a
- // fixed point.
- for (int i=3; i<numPoints-2; i+=3) {
- double lenLeft = Math.sqrt(Math.pow(h[i]-h[i-1], 2) + Math.pow(v[i]-v[i-1], 2));
- double lenRight = Math.sqrt(Math.pow(h[i+1]-h[i], 2) + Math.pow(v[i+1]-v[i], 2));
-
- // Without length we cannot define an angle, so skip the point.
- if (lenLeft < 1e-6 || lenRight < 1e-6) continue;
-
- double phiLeft = Math.atan2(v[i]-v[i-1], h[i]-h[i-1]);
- double phiRight = Math.atan2(v[i+1]-v[i], h[i+1]-h[i]);
-
- if (phiLeft-phiRight > Math.PI) {
- phiRight += 2.*Math.PI;
- } else if (phiRight-phiLeft > Math.PI) {
- phiLeft += 2.*Math.PI;
- }
-
- if (Math.abs(phiLeft-phiRight) > Math.PI/2.) {
- // The line turns more than 90 degrees, this is wrong. Move the control points
- // back in so they are the same as the point on the line. This disables the smooth
- // curve locally, reverting to a normal connect-the-dots polyline.
- h[i-1] = h[i+1] = h[i];
- v[i-1] = v[i+1] = v[i];
- } else {
- // Calculate the desired angle for the tangent by weighting the angle on each side,
- // the weight is inverse proportional to the distance to the next point.
- double phi = (lenRight*phiLeft + lenLeft*phiRight) / (lenLeft+lenRight);
-
- h[i-1] = h[i] - (float)(lenLeft*Math.cos(phi));
- v[i-1] = v[i] - (float)(lenLeft*Math.sin(phi));
- h[i+1] = h[i] + (float)(lenRight*Math.cos(phi));
- v[i+1] = v[i] + (float)(lenRight*Math.sin(phi));
- }
- }
-
- for (int i=0; i<numPoints-1; i+=3) {
- drawSmoothLine(h[i], v[i], h[i+1], v[i+1], h[i+2], v[i+2], h[i+3], v[i+3]);
- }
- }
- }
-
- public void fillPolygon(double[] h, double[] v, int numPoints)
- {
- int type = getContainmentType(h, v, numPoints, POLYGON);
- if (type == FULLY_INSIDE || type == INTERSECTS)
- {
- if (type == INTERSECTS)
- {
- ACoord clipped = clipper.clipPolygon(h, v, numPoints);
- h = clipped.hv[0][0];
- v = clipped.hv[1][0];
- numPoints = h.length;
- }
- int[] hInt = new int[numPoints];
- int[] vInt = new int[numPoints];
- for (int i = 0; i < numPoints; ++i)
- {
- hInt[i] = (int) h[i];
- vInt[i] = (int) v[i];
- }
- updateColor();
- g.fillPolygon(hInt, vInt, numPoints);
- drawPolygon(h, v, numPoints);
- }
- else if (type == CONTAINS)
- {
- Rectangle bounds = g.getClipBounds();
- updateColor();
- g.fillRect((int) Math.rint(bounds.getX()), (int) Math.rint(bounds.getY()), (int) Math.rint(bounds.getWidth()), (int) Math.rint(bounds.getHeight()));
- }
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/graphics/ATemplateGraphics2D.java b/graphics/AtlantisJava/src/atlantis/graphics/ATemplateGraphics2D.java
deleted file mode 100755
index 12dcf005ccc..00000000000
--- a/graphics/AtlantisJava/src/atlantis/graphics/ATemplateGraphics2D.java
+++ /dev/null
@@ -1,47 +0,0 @@
-package atlantis.graphics;
-
-import java.awt.*;
-
-/**
- * A very limited template graphics which implements the default behaviour
- * of the clip region.
- */
-
-public abstract class ATemplateGraphics2D extends ADummyGraphics2D {
-
- private Rectangle currentClip;
- private Rectangle imageBounds;
-
- public ATemplateGraphics2D(Rectangle bounds) {
- currentClip=new Rectangle(bounds);
- imageBounds=new Rectangle(bounds);
- }
-
- protected ATemplateGraphics2D(ATemplateGraphics2D parent) {
- currentClip=new Rectangle(parent.currentClip);
- imageBounds=new Rectangle(parent.imageBounds);
- }
-
- public abstract Graphics create();
-
- public Rectangle getClipBounds() {
- return new Rectangle(currentClip);
- }
-
- public void setClip(int x, int y, int width, int height) {
- currentClip=new Rectangle(x, y, width, height);
- }
-
- public void clipRect(int x, int y, int width, int height) {
- currentClip=currentClip.intersection(new Rectangle(x, y, width, height));
- }
-
- public void translate(int x, int y) {
- translate((double)x, (double)y);
- }
-
- public void translate(double x, double y) {
- currentClip.setLocation((int)Math.round(currentClip.x-x), (int)Math.round(currentClip.y-y));
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/graphics/AVectorGraphics.java b/graphics/AtlantisJava/src/atlantis/graphics/AVectorGraphics.java
deleted file mode 100755
index 058f8c075aa..00000000000
--- a/graphics/AtlantisJava/src/atlantis/graphics/AVectorGraphics.java
+++ /dev/null
@@ -1,309 +0,0 @@
-package atlantis.graphics;
-
-import java.awt.*;
-import java.awt.geom.Ellipse2D;
-import java.awt.geom.GeneralPath;
-
-/**
- * Used when drawing to postscript
- */
-public class AVectorGraphics extends AGraphics {
-
- private GeneralPath path=new GeneralPath();
-
- AVectorGraphics(Graphics g) {
- super(g);
- }
-
- public void setLineWidth(int lineWidth) {
- setStroke(new BasicStroke(lineWidth));
- }
-
- public void drawLine(int h0, int v0, int h1, int v1) {
- drawLine((double)h0, (double)v0, (double)h1, (double)v1);
- }
-
- public void drawLine(double h0, double v0, double h1, double v1) {
- if(clipper.isLineWithin(h0, v0, h1, v1)) {
- double[][] hvClipped=clipper.getHV();
- double h0Clipped=hvClipped[0][0];
- double v0Clipped=hvClipped[1][0];
- double h1Clipped=hvClipped[0][1];
- double v1Clipped=hvClipped[1][1];
-
- path.reset();
- path.moveTo((float)h0Clipped, (float)v0Clipped);
- path.lineTo((float)h1Clipped, (float)v1Clipped);
- updateColor();
- g.draw(path);
- }
- }
-
- protected void fillRect(double h, double v, int width, int height) {
- path.reset();
- float h0=(float)h;
- float v0=(float)v;
- float dh=(float)(width/2.);
- float dv=(float)(height/2.);
-
- path.moveTo(h0-dh, v0-dv);
- path.lineTo(h0+dh, v0-dv);
- path.lineTo(h0+dh, v0+dv);
- path.lineTo(h0-dh, v0+dv);
- path.closePath();
- updateColor();
- g.fill(path);
- }
-
- protected void fillOval(double h, double v, int width, int height) {
-
- Ellipse2D oval = new Ellipse2D.Float((float)(h-width/2.), (float)(v-height/2.), width, height);
- updateColor();
- g.fill(oval);
- }
-
- public void drawPolygon(double[] h, double[] v, int numPoints) {
-
- int type=getContainmentType(h, v, numPoints, POLYGON);
- if(type==FULLY_INSIDE||type==INTERSECTS) {
- if(type==INTERSECTS) {
- ACoord clipped=clipper.clipPolygon(h, v, numPoints);
- h=clipped.hv[0][0];
- v=clipped.hv[1][0];
- numPoints=h.length;
- }
-
- path.reset();
- for(int i=0; i<numPoints; ++i) {
- if(i==0)
- path.moveTo((float)h[i], (float)v[i]);
- else
- path.lineTo((float)h[i], (float)v[i]);
- }
- if(numPoints>0) {
- path.closePath();
- updateColor();
- g.draw(path);
- }
- }
- }
-
- public void drawPolyline(double[] h, double[] v, int numPoints) {
- int type=getContainmentType(h, v, numPoints, POLYLINE);
- if(type==FULLY_INSIDE||type==INTERSECTS) {
- int start=0;
- int end=numPoints-1;
-
- if(type==INTERSECTS) {
- // clip polylines if there is only one interval
- for(int i=0; i<numPoints-1; i++) {
- if(clipper.isLineWithin(h[i], v[i], h[i+1], v[i+1])) {
- start=i;
- break;
- }
- }
- for(int i=numPoints-1; i>start; i--) {
- if(clipper.isLineWithin(h[i], v[i], h[i-1], v[i-1])) {
- end=i;
- break;
- }
- }
- for(int i=start; i<end; i++) {
- if(!clipper.isLineWithin(h[i], v[i], h[i+1], v[i+1])) {
- start=0;
- end=numPoints-1;
- break;
- }
- }
- }
-
- /*
- if (type == INTERSECTS) {
- ACoord clipped = clipper.clipPolygon(h, v, numPoints);
- h = clipped.hv[0][0];
- v = clipped.hv[1][0];
- numPoints = h.length;
- }
- */
-
- path.reset();
- for(int i=start; i<=end; ++i) {
- if(i==start)
- path.moveTo((float)h[i], (float)v[i]);
- else
- path.lineTo((float)h[i], (float)v[i]);
- }
- if(end-start>0) {
- updateColor();
- g.draw(path);
- }
- }
- }
-
- // very similar with drawPolyline, but draw a dotted instead
- public void drawDottedPolyline(double[] h, double[] v, int numPoints) {
- int type=getContainmentType(h, v, numPoints, POLYLINE);
- if(type==FULLY_INSIDE||type==INTERSECTS) {
- int start=0;
- int end=numPoints-1;
-
- if(type==INTERSECTS) {
- // clip polylines if there is only one interval
- for(int i=0; i<numPoints-1; i++) {
- if(clipper.isLineWithin(h[i], v[i], h[i+1], v[i+1])) {
- start=i;
- break;
- }
- }
- for(int i=numPoints-1; i>start; i--) {
- if(clipper.isLineWithin(h[i], v[i], h[i-1], v[i-1])) {
- end=i;
- break;
- }
- }
- for(int i=start; i<end; i++) {
- if(!clipper.isLineWithin(h[i], v[i], h[i+1], v[i+1])) {
- start=0;
- end=numPoints-1;
- break;
- }
- }
- }
-
- path.reset();
- boolean drawFlag = false;
- for(int i=start; i<=end; ++i) {
- if(drawFlag)
- path.lineTo((float)h[i], (float)v[i]);
- else
- path.moveTo((float)h[i], (float)v[i]);
- drawFlag = !drawFlag;
- }
- if(end-start>0) {
- updateColor();
- g.draw(path);
- }
- }
-
- }
-
- public void drawSmoothPolyline(double[] h0, double[] v0, int numPoints0) {
-
- // For curves having less than 3 points and for picking use the normal polyline.
- if (numPoints0 < 3 || g instanceof APickingGraphics2D) {
- drawPolyline(h0, v0, numPoints0);
- return;
- }
-
- int type = getContainmentType(h0, v0, numPoints0, POLYLINE);
- if (type == FULLY_INSIDE || type == INTERSECTS) {
-
- GeneralPath curve = new GeneralPath();
- int numPoints = 3 * numPoints0 - 2;
-
- // Add the control points to the array, at 1/3 and 2/3
- // between the already existing points.
- float[] h = new float[numPoints];
- float[] v = new float[numPoints];
- for (int i=0; i<numPoints; i++) {
-
- switch (i%3) {
- case 0:
- // One of the fixed points.
- h[i] = (float)h0[i/3];
- v[i] = (float)v0[i/3];
- break;
- case 1:
- // First control point.
- h[i] = (float)(2./3. * h0[i/3] + 1./3. * h0[i/3+1]);
- v[i] = (float)(2./3. * v0[i/3] + 1./3. * v0[i/3+1]);
- break;
- case 2:
- // Second control point.
- h[i] = (float)(1./3. * h0[i/3] + 2./3. * h0[i/3+1]);
- v[i] = (float)(1./3. * v0[i/3] + 2./3. * v0[i/3+1]);
- break;
- }
- }
-
- // Now we have a normal polyline (straight line segments between fixed points),
- // but as a cubic Bezier curve. All we need to do to make it smooth is to move
- // the control points away from the curve, in such a way that [control point 2] -
- // [fixed point] - [control point 1] is a straight line for every fixed point.
- // We do this by averaging the angles of the line segments on either side of a
- // fixed point.
- for (int i=3; i<numPoints-2; i+=3) {
- double lenLeft = Math.sqrt(Math.pow(h[i]-h[i-1], 2) + Math.pow(v[i]-v[i-1], 2));
- double lenRight = Math.sqrt(Math.pow(h[i+1]-h[i], 2) + Math.pow(v[i+1]-v[i], 2));
-
- // Without length we cannot define an angle, so skip the point.
- if (lenLeft < 1e-6 || lenRight < 1e-6) continue;
-
- double phiLeft = Math.atan2(v[i]-v[i-1], h[i]-h[i-1]);
- double phiRight = Math.atan2(v[i+1]-v[i], h[i+1]-h[i]);
-
- if (phiLeft-phiRight > Math.PI) {
- phiRight += 2.*Math.PI;
- } else if (phiRight-phiLeft > Math.PI) {
- phiLeft += 2.*Math.PI;
- }
-
- if (Math.abs(phiLeft-phiRight) > Math.PI/2.) {
- // The line turns more than 90 degrees, this is wrong. Move the control points
- // back in so they are the same as the point on the line. This disables the smooth
- // curve locally, reverting to a normal connect-the-dots polyline.
- h[i-1] = h[i+1] = h[i];
- v[i-1] = v[i+1] = v[i];
- } else {
- // Calculate the desired angle for the tangent by weighting the angle on each side,
- // the weight is inverse proportional to the distance to the next point.
- double phi = (lenRight*phiLeft + lenLeft*phiRight) / (lenLeft+lenRight);
-
- h[i-1] = h[i] - (float)(lenLeft*Math.cos(phi));
- v[i-1] = v[i] - (float)(lenLeft*Math.sin(phi));
- h[i+1] = h[i] + (float)(lenRight*Math.cos(phi));
- v[i+1] = v[i] + (float)(lenRight*Math.sin(phi));
- }
- }
-
- curve.moveTo(h[0], v[0]);
- for (int i=3; i<numPoints; i+=3) {
- curve.curveTo(h[i-2], v[i-2], h[i-1], v[i-1], h[i], v[i]);
- }
-
- updateColor();
- g.draw(curve);
- }
- }
-
- public void fillPolygon(double[] h, double[] v, int numPoints) {
- int type=getContainmentType(h, v, numPoints, POLYGON);
- if(type==FULLY_INSIDE||type==INTERSECTS) {
- if(type==INTERSECTS) {
- ACoord clipped=clipper.clipPolygon(h, v, numPoints);
- h=clipped.hv[0][0];
- v=clipped.hv[1][0];
- numPoints=h.length;
- }
- path.reset();
-
- for(int i=0; i<numPoints; ++i)
- if(i==0)
- path.moveTo((float)h[i], (float)v[i]);
- else
- path.lineTo((float)h[i], (float)v[i]);
- if(numPoints>0) {
- path.closePath();
- updateColor();
- g.fill(path);
- g.draw(path);
- }
- } else if(type==CONTAINS) {
- Rectangle bounds=g.getClipBounds();
- updateColor();
- g.fillRect((int)Math.rint(bounds.getX()), (int)Math.rint(bounds.getY()),
- (int)Math.rint(bounds.getWidth()), (int)Math.rint(bounds.getHeight()));
- }
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/graphics/colormap/AColorMap.java b/graphics/AtlantisJava/src/atlantis/graphics/colormap/AColorMap.java
deleted file mode 100755
index 423a613163a..00000000000
--- a/graphics/AtlantisJava/src/atlantis/graphics/colormap/AColorMap.java
+++ /dev/null
@@ -1,365 +0,0 @@
-package atlantis.graphics.colormap;
-
-import java.io.File;
-import java.io.InputStream;
-import java.awt.Color;
-import javax.xml.parsers.DocumentBuilder;
-import javax.xml.parsers.DocumentBuilderFactory;
-
-import org.w3c.dom.Node;
-import org.w3c.dom.NodeList;
-import org.w3c.dom.NamedNodeMap;
-
-import atlantis.globals.AGlobals;
-import atlantis.output.AExceptionHandler;
-import atlantis.output.ALogInterface;
-import atlantis.output.AOutput;
-import atlantis.parameters.APar;
-import atlantis.utils.AUtilities;
-import atlantis.utils.ALogger;
-import atlantis.utils.xml.AXMLErrorHandler;
-
-
-public final class AColorMap
-{
- private static ALogger logger = ALogger.getLogger(AColorMap.class);
-
- private static final boolean VALIDATION = true;
- final public static int NO_COLOR = -1;
- final public static int INVISIBLE = -2;
- static final public int BG = 8; //background
- static final public int WH = 0; //white
- static final public int GY = 14; //grey
- static final public int RD = 20; //red
- static final public int GN = 21; //green
- static final public int BL = 22; //blue
- static final public int YE = 23; //yellow
- static final public int MA = 24; //magenta
- static final public int CY = 25; //cyan
- static final public int BK = 26; //black
- static final public int OR = 27; //orange
- static final public int CB = 28; //cornflower blue
- private static final String[] mapNames = {"Default(1)", "Default(2)", "M4+M5", "GrayDet",
- "Original", "Gray", "B/W", "HitCol", "GrayHitCol"};
- private static final String[] mapNamesPS = {"default1","default2","m4m5", "graydet",
- "original", "gray", "bw", "hitcol", "grayhitcol"};
- private static MappedColor[][] maps;
- private static int numColors;
- private static int numMaps;
-
- // Color map indices.
- public static final int COLOR_MAP_DEFAULT1 = 0;
- public static final int COLOR_MAP_DEFAULT2 = 1;
- public static final int COLOR_MAP_M4M5 = 2;
- public static final int COLOR_MAP_GRAYDET = 3;
- public static final int COLOR_MAP_ORIGINAL = 4;
- public static final int COLOR_MAP_GRAY = 5;
- public static final int COLOR_MAP_BW = 6;
- public static final int COLOR_MAP_HITCOL = 7;
- public static final int COLOR_MAP_GRAY_HITCOL = 8;
-
- //color map used if wrong value in config file
- static int currentMap = COLOR_MAP_DEFAULT1;
-
-
- public static void readColorMap(String name)
- {
- String fileName = null;
- String FILE_SEPAR = System.getProperty("file.separator");
-
- if(name != null && new File(name).canRead())
- {
- // color map file specified as command line argument
- fileName = name;
- }
- else
- {
- if(name != null)
- {
- logger.warn("Can't read color map file: " + name);
- }
- // color map file wasn't specified as command line argument
- fileName = ".Atlantis-colormap.xml"; // default name
- String fileNameFull = System.getProperty("user.home") + FILE_SEPAR + fileName;
- if(new File(fileNameFull).canRead())
- {
- // use existing user's color map file
- fileName = fileNameFull;
- }
- else
- {
- // use default color map file from Atlantis distribution
- fileName = AGlobals.instance().getHomeDirectory() + "configuration" +
- FILE_SEPAR + "colormap.xml";
- }
- }
-
- logger.info("Using color map file: " + fileName);
- try
- {
- InputStream isColorMap = AUtilities.getFileAsStream(fileName);
- DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance();
- factory.setValidating(VALIDATION);
- DocumentBuilder parser = factory.newDocumentBuilder();
- parser.setErrorHandler(new AXMLErrorHandler());
- Node colormap = parser.parse(isColorMap).getDocumentElement();
- NamedNodeMap cm = colormap.getAttributes();
- numMaps = Integer.parseInt(cm.getNamedItem("numMaps").getNodeValue().
- trim());
- numColors = Integer.parseInt(cm.getNamedItem("numColors").
- getNodeValue().trim());
- maps = new MappedColor[numMaps][numColors];
- NodeList list = colormap.getChildNodes();
- int count = list.getLength();
- for(int i = 0; i < count; i++)
- {
- Node mapping = list.item(i);
- if(mapping.getNodeType() == Node.ELEMENT_NODE)
- {
- NamedNodeMap atts = mapping.getAttributes();
- try
- {
- int map = Integer.parseInt(atts.getNamedItem("map").
- getNodeValue().trim());
- int index = Integer.parseInt(atts.getNamedItem("index").
- getNodeValue().trim());
- int r = Integer.parseInt(atts.getNamedItem("r").
- getNodeValue().trim());
- int g = Integer.parseInt(atts.getNamedItem("g").
- getNodeValue().trim());
- int b = Integer.parseInt(atts.getNamedItem("b").
- getNodeValue().trim());
- if(map < maps.length)
- {
- if(index < maps[map].length)
- {
- maps[map][index] = new MappedColor(r, g, b,
- index);
- }
- }
- }
- catch(NumberFormatException e)
- {
- AExceptionHandler.processException("Colour map error:\n" +
- mapping, e);
- }
- } // if
- } // for
- }
- catch(Exception e)
- {
- AExceptionHandler.processException("Error while reading colour map:\n" +
- fileName, e);
- }
- for(int i = 0; i < maps.length; i++)
- {
- for(int j = 0; j < maps[i].length; j++)
- {
- if(maps[i][j] == null)
- {
- AOutput.append("\nColorMap (" + i + "," + j +
- ") is not present",
- ALogInterface.BAD_COMMAND);
- }
- }
- }
-
- } // readColorMap() -----------------------------------------------------
-
-
-
- public static int getNumMaps()
- {
- return numMaps;
- }
-
-
- public static int getNumColors()
- {
- return numColors;
- }
-
-
- /**
- * Returns color map in the XML format.
- * [Former method writeColorMap() was writing the XML data directly into
- * the file.]
- * @return String
- */
- public static String getColorMapXML()
- {
- StringBuffer buffer = new StringBuffer();
- // color map DTD
- buffer.append(
- "<?xml version=\"1.0\"?>\n" +
- "<!DOCTYPE colormap [\n" +
- " <!ELEMENT colormap (Mapping*)>" +
- " <!ATTLIST colormap\n" +
- " numMaps CDATA #REQUIRED\n" +
- " numColors CDATA #REQUIRED>\n" +
- " <!ELEMENT Mapping EMPTY>\n" +
- " <!ATTLIST Mapping\n" +
- " map CDATA #REQUIRED\n" +
- " index CDATA #REQUIRED\n" +
- " r CDATA #REQUIRED\n" +
- " g CDATA #REQUIRED\n" +
- " b CDATA #REQUIRED>\n" +
- "]>\n\n\n");
- buffer.append("<colormap numMaps=\"" + maps.length +
- "\" numColors=\"" + maps[0].length + "\" >\n");
- for(int i = 0; i < maps.length; i++)
- {
- for(int j = 0; j < maps[i].length; j++)
- {
- int r = maps[i][j].getRed();
- int g = maps[i][j].getGreen();
- int b = maps[i][j].getBlue();
- buffer.append(" <Mapping map=\"" + i + "\" index=\"" + j +
- "\" r=\"" + r + "\" g=\"" + g + "\" b=\"" +
- b + "\"/>\n");
- }
- }
- buffer.append("</colormap>\n");
- return buffer.toString();
-
- } // getColorMapXML() ---------------------------------------------------
-
-
-
- public static String getPSPrologColorMap()
- {
- StringBuffer s = new StringBuffer();
- String newLine = System.getProperty("line.separator");
- s.append(newLine);
- for(int i = 0; i < maps.length; ++i)
- {
- s.append("/" + mapNamesPS[i] + "ColorMap" + newLine);
- s.append("<<" + newLine);
- for(int j = 0; j < maps[i].length; ++j)
- s.append(" /C" + j + " [" +
- String.format("%.3f",maps[i][j].getRed() / 255.) + " "
- + String.format("%.3f",maps[i][j].getGreen() / 255.) + " " +
- String.format("%.3f",maps[i][j].getBlue() / 255.)
- + "]" + newLine);
- s.append(">> def" + newLine);
- s.append(newLine);
- }
- return s.toString();
-
- } // getPSPrologColorMap() ----------------------------------------------
-
-
-
- public static Color[] getColors(int map)
- {
- Color[] col = new Color[maps[map].length];
- for(int i = 0; i < col.length; ++i)
- col[i] = (Color) maps[map][i];
- return col;
- }
-
- //From hot (red), index 255, to cold (blue), index 0
- public static Color[] getShades(int num)
- {
- assert (num>=2);
- Color[] col = new Color[num];
- col[0]=new Color(170,170,170);//grey for "other"
- for(int i = 1; i < num-1; ++i)
- col[i] = new Color(((255*i)/num),80,255-((255*i)/num));
- return col;
- }
-
- public static Color[] getColors()
- {
- return getColors(currentMap);
- }
-
-
- public static void setColorMap(int map)
- {
- if(map >= 0 && map < maps.length)
- {
- currentMap = map;
- APar parameterStore = APar.instance();
- parameterStore.get("Prefs","ColorMap").setI(map);
- }
- }
-
-
- public static void setColorMap(String mapName)
- {
- for(int i = 0; i < mapNames.length; i++)
- if(mapNames[i].equals(mapName))
- setColorMap(i);
- }
-
-
- public static int getColorMap()
- {
- return currentMap;
- }
-
- public static boolean drawFrames()
- {
- if(currentMap==COLOR_MAP_GRAY || currentMap==COLOR_MAP_BW)
- return true;
- else
- return false;
- }
-
- public static String getPSColorMapName()
- {
- return mapNamesPS[getColorMap()];
-
- } // getPSColorMapName() ------------------------------------------------
-
-
- public MappedColor getMappedColor(int colorIndex)
- {
- if(colorIndex < 0 && colorIndex >= maps[currentMap].length)
- {
- return null;
- }
- else
- {
- return maps[currentMap][colorIndex];
- }
- }
-
-
- public Color getColor(int colorIndex)
- {
- if(colorIndex < 0 && colorIndex >= maps[currentMap].length)
- {
- return null;
- }
- else
- {
- return(Color) maps[currentMap][colorIndex];
- }
- }
-
-
- public static String getTag(int colorIndex)
- {
- if(colorIndex < 0 && colorIndex >= maps[0].length)
- {
- return null;
- }
- else
- {
- return "C" + colorIndex;
- }
- }
-
-
- public static String[] getMapNames()
- {
- return(String[]) mapNames.clone();
- }
-
- public static MappedColor[][] getMaps() {
- return maps;
- }
-
-} // class AColorMap ========================================================
diff --git a/graphics/AtlantisJava/src/atlantis/graphics/colormap/MappedColor.java b/graphics/AtlantisJava/src/atlantis/graphics/colormap/MappedColor.java
deleted file mode 100755
index 53ace099fe8..00000000000
--- a/graphics/AtlantisJava/src/atlantis/graphics/colormap/MappedColor.java
+++ /dev/null
@@ -1,93 +0,0 @@
-// Copyright 2000, CERN, Geneva, Switzerland and University of Santa Cruz, California, U.S.A.
-package atlantis.graphics.colormap;
-
-
-import java.awt.Color;
-
-
-/**
- *
- * @author Charles Loomis
- **/
-public class MappedColor extends java.awt.Color {
-
- /**
- * Index of the color in the color map. */
- protected int colorIndex;
-
- /**
- * Value of the brightness/darkness of this color. Larger values
- * indicate darker colors and vice versa. */
- protected int brightness;
-
- /**
- * Constructor takes the RGB color components and the color index. */
- public MappedColor(int r, int g, int b,
- int colorIndex) {
-
- // Call the Color constructor.
- super(r, g, b);
-
- // Set the color index and brightness.
- this.colorIndex=colorIndex;
- brightness=0;
- }
-
- /**
- * Constructor takes the RGB color components, the color index,
- * and the brightness. */
- public MappedColor(int r, int g, int b,
- int colorIndex,
- int brightness) {
-
- // Call the Color constructor.
- super(r, g, b);
-
- // Set the color index and brightness.
- this.colorIndex=colorIndex;
- this.brightness=brightness;
- }
-
- /**
- * Make a brightened color based on this color. */
- public Color brighter() {
-
- int r=getRed()*10/7;
- int g=getGreen()*10/7;
- int b=getBlue()*10/7;
-
- r=Math.max(0, Math.min(255, r));
- g=Math.max(0, Math.min(255, g));
- b=Math.max(0, Math.min(255, b));
-
- return (Color)new MappedColor(r, g, b, colorIndex, brightness-1);
- }
-
- /**
- * Make a darkened color based on this color. */
- public Color darker() {
-
- int r=getRed()*7/10;
- int g=getGreen()*7/10;
- int b=getBlue()*7/10;
-
- r=Math.max(0, Math.min(255, r));
- g=Math.max(0, Math.min(255, g));
- b=Math.max(0, Math.min(255, b));
-
- return (Color)new MappedColor(r, g, b, colorIndex, brightness-1);
- }
-
- /**
- * Get the brightness of this color. */
- public int getBrightness() {
- return brightness;
- }
-
- /**
- * Get the tag associated with this color. */
- public String getColorTag() {
- return AColorMap.getTag(colorIndex);
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/graphics/dnd/ACallBack.java b/graphics/AtlantisJava/src/atlantis/graphics/dnd/ACallBack.java
deleted file mode 100755
index 5cc4ec0a64c..00000000000
--- a/graphics/AtlantisJava/src/atlantis/graphics/dnd/ACallBack.java
+++ /dev/null
@@ -1,9 +0,0 @@
-package atlantis.graphics.dnd;
-
-
-/**
- * Used in the Drag and Drop operations.
- */
-public interface ACallBack {
- void callBack(Object from);
-}
diff --git a/graphics/AtlantisJava/src/atlantis/graphics/dnd/ADnDButton.java b/graphics/AtlantisJava/src/atlantis/graphics/dnd/ADnDButton.java
deleted file mode 100755
index f637b28172b..00000000000
--- a/graphics/AtlantisJava/src/atlantis/graphics/dnd/ADnDButton.java
+++ /dev/null
@@ -1,88 +0,0 @@
-package atlantis.graphics.dnd;
-
-import java.awt.Point;
-import java.awt.Graphics;
-import javax.swing.JButton;
-import java.awt.image.BufferedImage;
-import java.awt.dnd.DragSourceDropEvent;
-import java.awt.dnd.DragSourceListener;
-import java.awt.dnd.DnDConstants;
-import java.awt.dnd.DragGestureListener;
-import java.awt.dnd.DragGestureEvent;
-import java.awt.dnd.DragSource;
-import java.awt.dnd.DragSourceDragEvent;
-import java.awt.dnd.DragSourceEvent;
-import java.util.Vector;
-
-/**
- * A button wich has Drag and Drop support ( see java.awt.dnd.*)
- * Used by the rubberbands.
- */
-
-public class ADnDButton extends JButton
- implements DragSourceListener, DragGestureListener, ACallBack {
-
- private DragSource dragSource;
- private Vector dragListeners;
-
- public ADnDButton(String name) {
- super(name);
- setName(name);
-
- dragSource=DragSource.getDefaultDragSource();
- dragSource.createDefaultDragGestureRecognizer(this, DnDConstants.ACTION_MOVE, this);
-
- dragListeners=new Vector();
- }
-
- // implementation of DragSourceListener
-
- // This method is invoked to signify that the Drag and Drop operation is complete.
- public void dragDropEnd(DragSourceDropEvent dsde) {}
-
- // Called as the hotspot enters a platform dependent drop site.
- public void dragEnter(DragSourceDragEvent dsde) {
- dsde.getDragSourceContext().setCursor(ADnDLabel.DROP_VALID);
- }
-
- // Called as the hotspot exits a platform dependent drop site.
- public void dragExit(DragSourceEvent dse) {
- dse.getDragSourceContext().setCursor(ADnDLabel.DROP_INVALID);
- }
-
- // Called as the hotspot moves over a platform dependent drop site.
- public void dragOver(DragSourceDragEvent dsde) {
- dsde.getDragSourceContext().setCursor(ADnDLabel.DROP_VALID);
- }
-
- // Called when the user has modified the drop gesture.
- public void dropActionChanged(DragSourceDragEvent dsde) {}
-
- // implementation of DragGestureListener
-
- public void dragGestureRecognized(DragGestureEvent dge) {
- BufferedImage resizeCursorImage=new BufferedImage(64, 64, BufferedImage.TYPE_4BYTE_ABGR);
-
- Graphics g=resizeCursorImage.getGraphics();
-
- g.drawLine(0, 0, 64, 64);
- g.dispose();
-
- // return Toolkit.getDefaultToolkit().createCustomCursor(resizeCursorImage, center, "resize")
-
-
- AObjectTransferable cbt=new AObjectTransferable(this);
-
- dragSource.startDrag(dge, ADnDLabel.DROP_INVALID, resizeCursorImage, new Point(0, 0), cbt, this);
- }
-
- public void callBack(Object to) {
- for(int i=0; i<dragListeners.size(); i++)
- ((ADragListener)dragListeners.get(i)).dragPerformed(this, to, -1);
- }
-
- public void addDragListener(ADragListener l) {
- dragListeners.addElement(l);
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/graphics/dnd/ADnDLabel.java b/graphics/AtlantisJava/src/atlantis/graphics/dnd/ADnDLabel.java
deleted file mode 100755
index 2b1873f5563..00000000000
--- a/graphics/AtlantisJava/src/atlantis/graphics/dnd/ADnDLabel.java
+++ /dev/null
@@ -1,184 +0,0 @@
-package atlantis.graphics.dnd;
-
-import java.awt.Color;
-import java.awt.Cursor;
-import java.awt.Dimension;
-import java.awt.datatransfer.DataFlavor;
-import java.awt.datatransfer.Transferable;
-import java.awt.dnd.DnDConstants;
-import java.awt.dnd.DragGestureEvent;
-import java.awt.dnd.DragGestureListener;
-import java.awt.dnd.DragSource;
-import java.awt.dnd.DragSourceDragEvent;
-import java.awt.dnd.DragSourceDropEvent;
-import java.awt.dnd.DragSourceEvent;
-import java.awt.dnd.DragSourceListener;
-import java.awt.dnd.DropTarget;
-import java.awt.dnd.DropTargetDragEvent;
-import java.awt.dnd.DropTargetDropEvent;
-import java.awt.dnd.DropTargetEvent;
-import java.awt.dnd.DropTargetListener;
-import java.util.Vector;
-
-import javax.swing.JLabel;
-
-import atlantis.graphics.ACursorFactory;
-import atlantis.output.ALogInterface;
-import atlantis.output.AOutput;
-
-/**
- * A label which has Drag and Drop support.
- * Used in the Window Control.
- */
-public class ADnDLabel extends JLabel
-implements DropTargetListener, DragSourceListener, DragGestureListener {
-
- private DragSource dragSource=null;
- private Vector dragListeners;
- private boolean dragHighlight;
- private String[] page;
-
- public JLabel getLabel() {
- return this;
- }
-
- public static final Cursor DROP_VALID;
- public static final Cursor DROP_INVALID;
-
- static {
- /* if(Toolkit.getDefaultToolkit().getBestCursorSize(64, 64).equals(new Dimension(64, 64))) {
- DROP_VALID=Toolkit.getDefaultToolkit().createCustomCursor(Toolkit.getDefaultToolkit().getImage(Atlantis.getHomeDirectory()
- +"img"+Atlantis.fileSep+"cursor_DnD_valid_64x64.gif"),
- new Point(1, 1), "ValidDnD");
- DROP_INVALID=Toolkit.getDefaultToolkit().createCustomCursor(Toolkit.getDefaultToolkit().getImage(Atlantis.getHomeDirectory()
- +"img"+Atlantis.fileSep+"cursor_DnD_invalid_64x64.gif"),
- new Point(9, 9), "InvalidDnD");
- } else {
- DROP_VALID=DragSource.DefaultMoveDrop;
- DROP_INVALID=DragSource.DefaultMoveNoDrop;
- } */
- DROP_VALID = ACursorFactory.getInstance().getDragValidCursor();
- DROP_INVALID = ACursorFactory.getInstance().getDragInvalidCursor();
- }
-
- public ADnDLabel(String name, boolean dragHighlight) {
- super(name, JLabel.CENTER);
- setName(name);
- setOpaque(true);
- page=null;
- this.dragHighlight=dragHighlight;
-
- dragSource=new DragSource();
- dragSource.createDefaultDragGestureRecognizer(this, DnDConstants.ACTION_MOVE, this);
- this.setDropTarget(new DropTarget(this, this));
- dragListeners=new Vector();
- }
-
- public ADnDLabel(String name, String[] wnames, boolean dragHighlight) {
- super(name, JLabel.CENTER);
- setName(name);
- setOpaque(true);
- page=wnames;
- this.dragHighlight=dragHighlight;
-
- dragSource=new DragSource();
- dragSource.createDefaultDragGestureRecognizer(this, DnDConstants.ACTION_MOVE, this);
- this.setDropTarget(new DropTarget(this, this));
- dragListeners=new Vector();
- }
-
- public Dimension getPreferredSize() {
- return new Dimension(15, 15);
- }
-
- // implementation of DropTargetListener
-
- private Color old;
-
- // Called when a drag operation has encountered the DropTarget.
- public void dragEnter(DropTargetDragEvent dtde) {
- dtde.acceptDrag(DnDConstants.ACTION_MOVE);
- if(dragHighlight) {
- old=getBackground();
- setBackground(new Color(150, 150, 150));
- }
- }
-
- // The drag operation has departed the DropTarget without dropping.
- public void dragExit(DropTargetEvent dte) {
- if(dragHighlight)
- setBackground(old);
- }
-
- // Called when a drag operation is ongoing on the DropTarget.
- public void dragOver(DropTargetDragEvent dtde) {
- }
-
- // The drag operation has terminated with a drop on this DropTarget.
- public void drop(DropTargetDropEvent dtde) {
- try {
- Transferable transferable=dtde.getTransferable();
- DataFlavor javaObjectDataFlavor=new DataFlavor(DataFlavor.javaJVMLocalObjectMimeType);
-
- if(transferable.isDataFlavorSupported(javaObjectDataFlavor)) {
- dtde.acceptDrop(DnDConstants.ACTION_MOVE);
- Object object=transferable.getTransferData(javaObjectDataFlavor);
-
- if(object instanceof ACallBack)
- ((ACallBack)object).callBack(this);
- else
- fireDragEvent(object);
- dtde.getDropTargetContext().dropComplete(true);
- } else
- AOutput.append("Cannot accept drop\n", ALogInterface.BAD_COMMAND);
- } catch(Exception e) {
- e.printStackTrace();
- dtde.rejectDrop();
- }
- }
-
- private void fireDragEvent(Object from) {
- for(int i=0; i<dragListeners.size(); i++)
- ((ADragListener)dragListeners.get(i)).dragPerformed(from, this, -1);
- }
-
- // Called if the user has modified the current drop gesture.
- public void dropActionChanged(DropTargetDragEvent dtde) {}
-
- // implementation of DragSourceListener
-
- // This method is invoked to signify that the Drag and Drop operation is complete.
- public void dragDropEnd(DragSourceDropEvent dsde) {}
-
- // Called as the hotspot enters a platform dependent drop site.
- public void dragEnter(DragSourceDragEvent dsde) {
- dsde.getDragSourceContext().setCursor(DROP_VALID);
- }
-
- // Called as the hotspot exits a platform dependent drop site.
- public void dragExit(DragSourceEvent dse) {
- dse.getDragSourceContext().setCursor(DROP_INVALID);
- }
-
- // Called as the hotspot moves over a platform dependent drop site.
- public void dragOver(DragSourceDragEvent dsde) {
- dsde.getDragSourceContext().setCursor(DROP_VALID);
- }
-
- // Called when the user has modified the drop gesture.
- public void dropActionChanged(DragSourceDragEvent dsde) {}
-
- // implementation of DragGestureListener
- public void dragGestureRecognized(DragGestureEvent dge) {
- dragSource.startDrag(dge, DROP_VALID, new AObjectTransferable(this), this);
- }
-
- public void addDragListener(ADragListener l) {
- dragListeners.addElement(l);
- }
-
- public String[] returnPageName()
- {
- return page;
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/graphics/dnd/ADragListener.java b/graphics/AtlantisJava/src/atlantis/graphics/dnd/ADragListener.java
deleted file mode 100755
index 429b9a0af14..00000000000
--- a/graphics/AtlantisJava/src/atlantis/graphics/dnd/ADragListener.java
+++ /dev/null
@@ -1,9 +0,0 @@
-package atlantis.graphics.dnd;
-
-
-/**
- * The listener to drag operations. It is suported by ADnDLabel and ADnDButton.
- */
-public interface ADragListener {
- void dragPerformed(Object from, Object to, int action);
-}
diff --git a/graphics/AtlantisJava/src/atlantis/graphics/dnd/AObjectTransferable.java b/graphics/AtlantisJava/src/atlantis/graphics/dnd/AObjectTransferable.java
deleted file mode 100755
index d823077f674..00000000000
--- a/graphics/AtlantisJava/src/atlantis/graphics/dnd/AObjectTransferable.java
+++ /dev/null
@@ -1,62 +0,0 @@
-package atlantis.graphics.dnd;
-
-
-import java.awt.datatransfer.DataFlavor;
-import java.awt.datatransfer.Transferable;
-
-
-/**
- * Used by Drag and Drop
- * A implementation of a transferable which
- * transfers an Java object (really an pointer to it).
- */
-public class AObjectTransferable implements Transferable {
- private Object object;
-
- /**
- * Creates the Transferable which will transfer the specified object.
- * @param object The object to be transferred
- */
- public AObjectTransferable(Object object) {
- this.object=object;
- }
-
- /**
- * Returns the transferred for a specific DataFlavor.
- * @param flavor The DataFlavor for which to get the transferred object.
- * @return The transferred object.
- */
- public Object getTransferData(DataFlavor flavor) {
- return object;
- }
-
- /**
- * Returns an array of DataFlavor objects indicating the flavors the
- * data can be provided in.
- * @return The set of available flavors.
- */
- public DataFlavor[] getTransferDataFlavors() {
- DataFlavor df=null;
-
- try {
- df=new DataFlavor(DataFlavor.javaJVMLocalObjectMimeType);
- } catch(ClassNotFoundException e) {
- throw new Error("Cannot create DataFlavor.javaJVMLocalObjectMimeType "+e.getMessage());
- }
- return new DataFlavor[] {df};
- }
-
- /**
- * Returns whether or not the specified data flavor is
- * supported by this transferable.
- * @param flavor The data flavor that needs to be checked
- * @return True if the flavor is supported. False Otherwise.
- */
- public boolean isDataFlavorSupported(DataFlavor flavor) {
- if(flavor.getHumanPresentableName().equals(DataFlavor.javaJVMLocalObjectMimeType))
- return true;
- else
- return false;
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/graphics/encoders/AImageEncoder.java b/graphics/AtlantisJava/src/atlantis/graphics/encoders/AImageEncoder.java
deleted file mode 100644
index a27b4f07d8b..00000000000
--- a/graphics/AtlantisJava/src/atlantis/graphics/encoders/AImageEncoder.java
+++ /dev/null
@@ -1,167 +0,0 @@
-package atlantis.graphics.encoders;
-
-import atlantis.canvas.ACanvas;
-import atlantis.utils.ALogger;
-
-import java.awt.Dimension;
-import java.awt.Graphics2D;
-import java.awt.Image;
-import java.awt.RenderingHints;
-import java.awt.image.BufferedImage;
-import java.io.IOException;
-import java.io.File;
-import java.io.FileOutputStream;
-import java.io.BufferedOutputStream;
-
-import org.apache.batik.dom.svg.SVGDOMImplementation;
-import org.apache.batik.svggen.SVGGraphics2D;
-
-import org.sourceforge.jlibeps.epsgraphics.*;
-import org.w3c.dom.*;
-import org.w3c.dom.svg.SVGDocument;
-
-/**
- * Takes the image drawn on the canvas and encodes it in the given format
- * @author sboeser
- */
-public class AImageEncoder {
-
- //The logger
- private final static ALogger logger = ALogger.getLogger(AImageEncoder.class);
-
- /**
- * Grabs canvas and encodes the data in PNG format.
- * @param imageWidth resulting image width
- * @param imageHeight resulting image height
- * @return byte[]
- */
- public byte[] getPNGData(int imageWidth, int imageHeight){
-
- // Draw image
- Image image = new BufferedImage(imageWidth, imageHeight, BufferedImage.TYPE_INT_ARGB);
- ACanvas.getCanvas().drawScaledCanvas(image.getGraphics(), imageWidth, imageHeight, "png");
-
- // Encode as PNG.
- PngEncoder encoder = new PngEncoder(image, true, PngEncoder.FILTER_NONE, 9);
- byte[] data = encoder.pngEncode();
- return data;
-
- }
-
- /**
- * Get a scaled version of the PNG image - mostly used to create thumbnails
- * NOTE: in contrast to getPNGData, this will first create the image with given
- * width and height and then scale everything (including window
- * borders, title bar, etc...)
- * @param width image width before scaling
- * @param height image height before scaling
- * @param scale the scale factor
- * @return the PNG data
- */
- public byte[] getScaledPNGData(int width, int height, double scale){
-
- // Draw a temporary full-size image
- Image inputImage = new BufferedImage(width, height, BufferedImage.TYPE_INT_ARGB);
- ACanvas.getCanvas().drawScaledCanvas(inputImage.getGraphics(), width, height, "png");
-
- //Calculate target height keeping aspect ratio
- int targetHeight = (int)(scale*height);
- int targetWidth = (int)(scale*width);
-
-
- /**
- * Now rescale the image in steps - do not use Image.getScaledInstance,
- * which is outdated and way to slow!
- */
-
- while (inputImage.getWidth(null) != targetWidth){
-
- //Resize by no more than a factor of two in one step
- if (inputImage.getWidth(null)/targetWidth > 2. ){
- width = (int)(inputImage.getWidth(null)/2.);
- height = (int)(inputImage.getHeight(null)/2.);
- } else {
- width = targetWidth;
- height = targetHeight;
- }
-
- //log for debugging
- logger.debug("Rescaling image from "+inputImage.getWidth(null)+"x"+inputImage.getHeight(null)+
- " to "+width+"x"+height);
-
- //Now redraw that to the scaled image
- BufferedImage scaledImage = new BufferedImage(width, height, BufferedImage.TYPE_INT_ARGB);
- Graphics2D scaledGraphics = scaledImage.createGraphics();
- scaledGraphics.setRenderingHint(RenderingHints.KEY_INTERPOLATION,RenderingHints.VALUE_INTERPOLATION_BICUBIC);
- scaledGraphics.drawImage(inputImage, 0, 0, width, height, null);
- scaledGraphics.dispose();
-
- //Provide the scaled image as new input in case we need to rescale once more
- inputImage = scaledImage;
- }
-
- // Encode as PNG.
- PngEncoder encoder = new PngEncoder(inputImage, true, PngEncoder.FILTER_NONE, 9);
- byte[] data = encoder.pngEncode();
- return data;
-
- }
-
-
- /**
- * Grab canvas, encode the information as EPS and save to a file
- * @param imageWidth image width
- * @param imageHeight image height
- * @param saveFile save file
- */
-
- public void saveEPS(int imageWidth, int imageHeight, File saveFile) throws IOException{
-
- //Create the output stream
- FileOutputStream fos = new FileOutputStream(saveFile);
- BufferedOutputStream bos = new BufferedOutputStream(fos);
-
- // Create a new postscript graphics object
- EpsGraphics2D g = new EpsGraphics2D("Atlantis",bos,0,0,imageWidth,imageHeight);
- // Draw text as shapes
- g.setAccurateTextMode(true);
- // Draw into the postscript graphics
- ACanvas.getCanvas().drawScaledCanvas(g, imageWidth, imageHeight, "eps");
- g.flush();
- g.close();
- fos.close();
- bos.close();
-
- }
-
- /**
- * Grab canvas, encode the information as SVG and save to a file
- * @param imageWidth image width
- * @param imageHeight image height
- * @param saveFile save file
- */
-
- public void saveSVG(int imageWidth, int imageHeight, File saveFile) throws IOException{
-
- // Document Object Model to define our SVG Document
- DOMImplementation domImpl =
- SVGDOMImplementation.getDOMImplementation();
-
- // We need to write the SVG into a Document
- String svgNS = SVGDOMImplementation.SVG_NAMESPACE_URI;
- SVGDocument doc = (SVGDocument) domImpl.createDocument(svgNS, "svg", null);
-
- // Construct an SVGGraphics2D from our Document
- SVGGraphics2D g = new SVGGraphics2D(doc);
-
- g.setSVGCanvasSize(new Dimension(imageWidth, imageHeight));
-
- // Paint the scaled Canvas onto our SVG Graphics2D
- ACanvas.getCanvas().drawScaledCanvas(g, imageWidth, imageHeight, "svg");
-
- // Stream the output into our chosen file
- g.stream(saveFile.getAbsolutePath());
-
-
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/graphics/encoders/PngEncoder.java b/graphics/AtlantisJava/src/atlantis/graphics/encoders/PngEncoder.java
deleted file mode 100755
index a9c7b5aa61b..00000000000
--- a/graphics/AtlantisJava/src/atlantis/graphics/encoders/PngEncoder.java
+++ /dev/null
@@ -1,582 +0,0 @@
-package atlantis.graphics.encoders;
-
-// package com.keypoint;
-
-
-import java.awt.*;
-import java.awt.image.*;
-import java.util.zip.*;
-import java.io.*;
-
-/**
- * PngEncoder takes a Java Image object and creates a byte string which can be saved as a PNG file.
- * The Image is presumed to use the DirectColorModel.
- *
- * Thanks to Jay Denny at KeyPoint Software
- * http://www.keypoint.com/
- * who let me develop this code on company time.
- *
- * You may contact me with (probably very-much-needed) improvements,
- * comments, and bug fixes at:
- *
- * david@catcode.com
- *
- * This library is free software; you can redistribute it and/or
- * modify it under the terms of the GNU Lesser General Public
- * License as published by the Free Software Foundation; either
- * version 2.1 of the License, or (at your option) any later version.
- *
- * This library is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
- * Lesser General Public License for more details.
- *
- * You should have received a copy of the GNU Lesser General Public
- * License along with this library; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
- * A copy of the GNU LGPL may be found at
- * http://www.gnu.org/copyleft/lesser.html,
- *
- * @author J. David Eisenberg
- * @version 1.4, 31 March 2000
- *
- * Added ImageObserver so that getHeight, getWidth calls work properly.
- *
- * @author M.Donszelmann
- */
-public class PngEncoder extends Object implements ImageObserver {
-
- /** Constant specifying that alpha channel should be encoded. */
- public static final boolean ENCODE_ALPHA=true;
-
- /** Constant specifying that alpha channel should not be encoded. */
- public static final boolean NO_ALPHA=false;
-
- /** Constants for filters */
- public static final int FILTER_NONE=0;
- public static final int FILTER_SUB=1;
- public static final int FILTER_UP=2;
- public static final int FILTER_LAST=2;
-
- protected byte[] pngBytes;
- protected byte[] priorRow;
- protected byte[] leftBytes;
- protected Image image;
- protected int width, height;
- protected int bytePos, maxPos;
- protected int hdrPos, dataPos, endPos;
- protected CRC32 crc=new CRC32();
- protected long crcValue;
- protected boolean encodeAlpha;
- protected int filter;
- protected int bytesPerPixel;
- protected int compressionLevel;
-
- public PngEncoder() {
- this(null, false, FILTER_NONE, 0);
- }
-
- /**
- * Class constructor specifying Image to encode, with no alpha channel encoding.
- *
- * @param image A Java Image object which uses the DirectColorModel
- * @see java.awt.Image
- */
- public PngEncoder(Image image) {
- this(image, false, FILTER_NONE, 0);
- }
-
- /**
- * Class constructor specifying Image to encode, and whether to encode alpha.
- *
- * @param image A Java Image object which uses the DirectColorModel
- * @param encodeAlpha Encode the alpha channel? false=no; true=yes
- * @see java.awt.Image
- */
- public PngEncoder(Image image, boolean encodeAlpha) {
- this(image, encodeAlpha, FILTER_NONE, 0);
- }
-
- /**
- * Class constructor specifying Image to encode, whether to encode alpha, and filter to use.
- *
- * @param image A Java Image object which uses the DirectColorModel
- * @param encodeAlpha Encode the alpha channel? false=no; true=yes
- * @param whichFilter 0=none, 1=sub, 2=up
- * @see java.awt.Image
- */
- public PngEncoder(Image image, boolean encodeAlpha, int whichFilter) {
- this(image, encodeAlpha, whichFilter, 0);
- }
-
- /**
- * Class constructor specifying Image source to encode, whether to encode alpha, filter to use, and compression level.
- *
- * @param image A Java Image object
- * @param encodeAlpha Encode the alpha channel? false=no; true=yes
- * @param whichFilter 0=none, 1=sub, 2=up
- * @param compLevel 0..9
- * @see java.awt.Image
- */
- public PngEncoder(Image image, boolean encodeAlpha, int whichFilter,
- int compLevel) {
- this.image=image;
- this.encodeAlpha=encodeAlpha;
- setFilter(whichFilter);
- if(compLevel>=0&&compLevel<=9) {
- this.compressionLevel=compLevel;
- }
- }
-
- /**
- * Set the image to be encoded
- *
- * @param image A Java Image object which uses the DirectColorModel
- * @see java.awt.Image
- */
- public void setImage(Image image) {
- this.image=image;
- pngBytes=null;
- }
-
- /** method to wait for image */
- private int imageStatus;
-
- public boolean imageUpdate(Image image, int flags, int x, int y, int width, int height) {
- imageStatus=flags;
- if(((flags&ALLBITS)==ALLBITS)||((flags&(ABORT|ERROR))!=0)) {
- return false;
- }
- return true;
- }
-
- /**
- * Creates an array of bytes that is the PNG equivalent of the current image, specifying whether to encode alpha or not.
- *
- * @param encodeAlpha boolean false=no alpha, true=encode alpha
- * @return an array of bytes, or null if there was a problem
- */
- public byte[] pngEncode(boolean encodeAlpha) {
- byte[] pngIdBytes= { -119, 80, 78, 71, 13, 10, 26, 10 };
-
- if(image==null) {
- return null;
- }
-
- imageStatus=0;
- boolean status=Toolkit.getDefaultToolkit().prepareImage(image, -1, -1, this);
-
- if(!status) {
- while(((imageStatus&(ALLBITS))==0)&&((imageStatus&(ABORT|ERROR))==0)) {
- try {
- Thread.sleep(100);
- } catch(Exception e) {}
- }
- // FIXED: moved this inside the "if (!status)" area
- if((imageStatus&(ALLBITS))==0) {
- return null;
- }
- }
-
- width=image.getWidth(null);
- height=image.getHeight(null);
-
- /*
- * start with an array that is big enough to hold all the pixels
- * (plus filter bytes), and an extra 200 bytes for header info
- */
- pngBytes=new byte[((width+1)*height*3)+200];
-
- /*
- * keep track of largest byte written to the array
- */
- maxPos=0;
-
- bytePos=writeBytes(pngIdBytes, 0);
- hdrPos=bytePos;
- writeHeader();
- dataPos=bytePos;
- if(writeImageData()) {
- writeEnd();
- pngBytes=resizeByteArray(pngBytes, maxPos);
- } else {
- pngBytes=null;
- }
- return pngBytes;
- }
-
- /**
- * Creates an array of bytes that is the PNG equivalent of the current image.
- * Alpha encoding is determined by its setting in the constructor.
- *
- * @return an array of bytes, or null if there was a problem
- */
- public byte[] pngEncode() {
- return pngEncode(encodeAlpha);
- }
-
- /**
- * Set the alpha encoding on or off.
- *
- * @param encodeAlpha false=no, true=yes
- */
- public void setEncodeAlpha(boolean encodeAlpha) {
- this.encodeAlpha=encodeAlpha;
- }
-
- /**
- * Retrieve alpha encoding status.
- *
- * @return boolean false=no, true=yes
- */
- public boolean getEncodeAlpha() {
- return encodeAlpha;
- }
-
- /**
- * Set the filter to use
- *
- * @param whichFilter from constant list
- */
- public void setFilter(int whichFilter) {
- this.filter=FILTER_NONE;
- if(whichFilter<=FILTER_LAST) {
- this.filter=whichFilter;
- }
- }
-
- /**
- * Retrieve filtering scheme
- *
- * @return int (see constant list)
- */
- public int getFilter() {
- return filter;
- }
-
- /**
- * Set the compression level to use
- *
- * @param level 0 through 9
- */
- public void setCompressionLevel(int level) {
- if(level>=0&&level<=9) {
- this.compressionLevel=level;
- }
- }
-
- /**
- * Retrieve compression level
- *
- * @return int in range 0-9
- */
- public int getCompressionLevel() {
- return compressionLevel;
- }
-
- /**
- * Increase or decrease the length of a byte array.
- *
- * @param array The original array.
- * @param newLength The length you wish the new array to have.
- * @return Array of newly desired length. If shorter than the
- * original, the trailing elements are truncated.
- */
- protected byte[] resizeByteArray(byte[] array, int newLength) {
- byte[] newArray=new byte[newLength];
- int oldLength=array.length;
-
- System.arraycopy(array, 0, newArray, 0, Math.min(oldLength, newLength));
- return newArray;
- }
-
- /**
- * Write an array of bytes into the pngBytes array.
- * Note: This routine has the side effect of updating
- * maxPos, the largest element written in the array.
- * The array is resized by 1000 bytes or the length
- * of the data to be written, whichever is larger.
- *
- * @param data The data to be written into pngBytes.
- * @param offset The starting point to write to.
- * @return The next place to be written to in the pngBytes array.
- */
- protected int writeBytes(byte[] data, int offset) {
- maxPos=Math.max(maxPos, offset+data.length);
- if(data.length+offset>pngBytes.length) {
- pngBytes=resizeByteArray(pngBytes, pngBytes.length+Math.max(1000, data.length));
- }
- System.arraycopy(data, 0, pngBytes, offset, data.length);
- return offset+data.length;
- }
-
- /**
- * Write an array of bytes into the pngBytes array, specifying number of bytes to write.
- * Note: This routine has the side effect of updating
- * maxPos, the largest element written in the array.
- * The array is resized by 1000 bytes or the length
- * of the data to be written, whichever is larger.
- *
- * @param data The data to be written into pngBytes.
- * @param nBytes The number of bytes to be written.
- * @param offset The starting point to write to.
- * @return The next place to be written to in the pngBytes array.
- */
- protected int writeBytes(byte[] data, int nBytes, int offset) {
- maxPos=Math.max(maxPos, offset+nBytes);
- if(nBytes+offset>pngBytes.length) {
- pngBytes=resizeByteArray(pngBytes, pngBytes.length+Math.max(1000, nBytes));
- }
- System.arraycopy(data, 0, pngBytes, offset, nBytes);
- return offset+nBytes;
- }
-
- /**
- * Write a two-byte integer into the pngBytes array at a given position.
- *
- * @param n The integer to be written into pngBytes.
- * @param offset The starting point to write to.
- * @return The next place to be written to in the pngBytes array.
- */
- protected int writeInt2(int n, int offset) {
- byte[] temp= { (byte)((n>>8)&0xff), (byte)(n&0xff) };
- return writeBytes(temp, offset);
- }
-
- /**
- * Write a four-byte integer into the pngBytes array at a given position.
- *
- * @param n The integer to be written into pngBytes.
- * @param offset The starting point to write to.
- * @return The next place to be written to in the pngBytes array.
- */
- protected int writeInt4(int n, int offset) {
- byte[] temp= { (byte)((n>>24)&0xff), (byte)((n>>16)&0xff), (byte)((n>>8)&0xff), (byte)(n&0xff) };
- return writeBytes(temp, offset);
- }
-
- /**
- * Write a single byte into the pngBytes array at a given position.
- *
- * @param b The integer to be written into pngBytes.
- * @param offset The starting point to write to.
- * @return The next place to be written to in the pngBytes array.
- */
- protected int writeByte(int b, int offset) {
- byte[] temp= { (byte)b };
- return writeBytes(temp, offset);
- }
-
- /**
- * Write a string into the pngBytes array at a given position.
- * This uses the getBytes method, so the encoding used will
- * be its default.
- *
- * @param s The string to be written into pngBytes.
- * @param offset The starting point to write to.
- * @return The next place to be written to in the pngBytes array.
- * @see java.lang.String#getBytes()
- */
- protected int writeString(String s, int offset) {
- return writeBytes(s.getBytes(), offset);
- }
-
- /**
- * Write a PNG "IHDR" chunk into the pngBytes array.
- */
- protected void writeHeader() {
- int startPos;
-
- startPos=bytePos=writeInt4(13, bytePos);
- bytePos=writeString("IHDR", bytePos);
- width=image.getWidth(null);
- height=image.getHeight(null);
- bytePos=writeInt4(width, bytePos);
- bytePos=writeInt4(height, bytePos);
- bytePos=writeByte(8, bytePos); // bit depth
- bytePos=writeByte((encodeAlpha)?6:2, bytePos); // direct model
- bytePos=writeByte(0, bytePos); // compression method
- bytePos=writeByte(0, bytePos); // filter method
- bytePos=writeByte(0, bytePos); // no interlace
- crc.reset();
- crc.update(pngBytes, startPos, bytePos-startPos);
- crcValue=crc.getValue();
- bytePos=writeInt4((int)crcValue, bytePos);
- }
-
- /**
- * Perform "sub" filtering on the given row.
- * Uses temporary array leftBytes to store the original values
- * of the previous pixels. The array is 16 bytes long, which
- * will easily hold two-byte samples plus two-byte alpha.
- *
- * @param pixels The array holding the scan lines being built
- * @param startPos Starting position within pixels of bytes to be filtered.
- * @param width Width of a scanline in pixels.
- */
- protected void filterSub(byte[] pixels, int startPos, int width) {
- int i;
- int offset=bytesPerPixel;
- int actualStart=startPos+offset;
- int nBytes=width*bytesPerPixel;
- int leftInsert=offset;
- int leftExtract=0;
-
- for(i=actualStart; i<startPos+nBytes; i++) {
- leftBytes[leftInsert]=pixels[i];
- pixels[i]=(byte)((pixels[i]-leftBytes[leftExtract])%256);
- leftInsert=(leftInsert+1)%0x0f;
- leftExtract=(leftExtract+1)%0x0f;
- }
- }
-
- /**
- * Perform "up" filtering on the given row.
- * Side effect: refills the prior row with current row
- *
- * @param pixels The array holding the scan lines being built
- * @param startPos Starting position within pixels of bytes to be filtered.
- * @param width Width of a scanline in pixels.
- */
- protected void filterUp(byte[] pixels, int startPos, int width) {
- int i, nBytes;
- byte current_byte;
-
- nBytes=width*bytesPerPixel;
-
- for(i=0; i<nBytes; i++) {
- current_byte=pixels[startPos+i];
- pixels[startPos+i]=(byte)((pixels[startPos+i]-priorRow[i])%256);
- priorRow[i]=current_byte;
- }
- }
-
- /**
- * Write the image data into the pngBytes array.
- * This will write one or more PNG "IDAT" chunks. In order
- * to conserve memory, this method grabs as many rows as will
- * fit into 32K bytes, or the whole image; whichever is less.
- *
- *
- * @return true if no errors; false if error grabbing pixels
- */
- protected boolean writeImageData() {
- int rowsLeft=height; // number of rows remaining to write
- int startRow=0; // starting row to process this time through
- int nRows; // how many rows to grab at a time
-
- byte[] scanLines; // the scan lines to be compressed
- int scanPos; // where we are in the scan lines
- int startPos; // where this line's actual pixels start (used for filtering)
-
- byte[] compressedLines; // the resultant compressed lines
- int nCompressed; // how big is the compressed area?
-
- PixelGrabber pg;
-
- bytesPerPixel=(encodeAlpha)?4:3;
-
- Deflater scrunch=new Deflater(compressionLevel);
- ByteArrayOutputStream outBytes=new ByteArrayOutputStream(1024);
-
- DeflaterOutputStream compBytes=new DeflaterOutputStream(outBytes, scrunch);
- try {
- while(rowsLeft>0) {
- nRows=Math.min(32767/(width*(bytesPerPixel+1)), rowsLeft);
- // nRows = rowsLeft;
- int[] pixels=new int[width*nRows];
-
- pg=new PixelGrabber(image, 0, startRow, width, nRows, pixels, 0, width);
- try {
- pg.grabPixels();
- } catch(Exception e) {
- System.err.println("interrupted waiting for pixels!");
- return false;
- }
- if((pg.getStatus()&ImageObserver.ABORT)!=0) {
- System.err.println("image fetch aborted or errored");
- return false;
- }
-
- /*
- * Create a data chunk. scanLines adds "nRows" for
- * the filter bytes.
- */
- scanLines=new byte[width*nRows*bytesPerPixel+nRows];
-
- if(filter==FILTER_SUB) {
- leftBytes=new byte[16];
- }
- if(filter==FILTER_UP) {
- priorRow=new byte[width*bytesPerPixel];
- }
-
- scanPos=0;
- startPos=1;
- for(int i=0; i<width*nRows; i++) {
- if(i%width==0) {
- scanLines[scanPos++]=(byte)filter;
- startPos=scanPos;
- }
- scanLines[scanPos++]=(byte)((pixels[i]>>16)&0xff);
- scanLines[scanPos++]=(byte)((pixels[i]>>8)&0xff);
- scanLines[scanPos++]=(byte)((pixels[i])&0xff);
- if(encodeAlpha) {
- scanLines[scanPos++]=(byte)((pixels[i]>>24)&0xff);
- }
- if((i%width==width-1)&&(filter!=FILTER_NONE)) {
- if(filter==FILTER_SUB) {
- filterSub(scanLines, startPos, width);
- }
- if(filter==FILTER_UP) {
- filterUp(scanLines, startPos, width);
- }
- }
- }
-
- /*
- * Write these lines to the output area
- */
- compBytes.write(scanLines, 0, scanPos);
-
- startRow+=nRows;
- rowsLeft-=nRows;
- }
- compBytes.close();
-
- /*
- * Write the compressed bytes
- */
- compressedLines=outBytes.toByteArray();
- nCompressed=compressedLines.length;
-
- crc.reset();
- bytePos=writeInt4(nCompressed, bytePos);
- bytePos=writeString("IDAT", bytePos);
- crc.update("IDAT".getBytes());
- bytePos=writeBytes(compressedLines, nCompressed, bytePos);
- crc.update(compressedLines, 0, nCompressed);
-
- crcValue=crc.getValue();
- bytePos=writeInt4((int)crcValue, bytePos);
- scrunch.finish();
- return true;
- } catch(IOException e) {
- System.err.println(e.toString());
- return false;
- }
- }
-
- /**
- * Write a PNG "IEND" chunk into the pngBytes array.
- */
- protected void writeEnd() {
- bytePos=writeInt4(0, bytePos);
- bytePos=writeString("IEND", bytePos);
- crc.reset();
- crc.update("IEND".getBytes());
- crcValue=crc.getValue();
- bytePos=writeInt4((int)crcValue, bytePos);
- }
-}
-
diff --git a/graphics/AtlantisJava/src/atlantis/graphics/layout/AFlowLayout.java b/graphics/AtlantisJava/src/atlantis/graphics/layout/AFlowLayout.java
deleted file mode 100755
index 1d391e05e84..00000000000
--- a/graphics/AtlantisJava/src/atlantis/graphics/layout/AFlowLayout.java
+++ /dev/null
@@ -1,115 +0,0 @@
-package atlantis.graphics.layout;
-
-import java.awt.Container;
-import java.awt.Insets;
-import java.awt.LayoutManager;
-import java.awt.Component;
-import java.awt.Dimension;
-
-/**
- * This Layout manager aranges the components in a flow like awt.FlowLayout.
- * The difference is that this layout resizes the container to the minimum
- * size after every layout operation, and therefore ensures that all components
- * it laysout are visible. Nothing to do with the layout of the Atlantis canvas.
- */
-
-public class AFlowLayout implements LayoutManager {
- private int hgap;
- private int vgap;
-
- public AFlowLayout(int hgap, int vgap) {
- this.hgap=hgap;
- this.vgap=vgap;
- }
-
- public void addLayoutComponent(String name, Component comp) {}
-
- public void removeLayoutComponent(Component comp) {}
-
- public Dimension minimumLayoutSize(Container target) {
- return preferredLayoutSize(target);
- }
-
- public Dimension preferredLayoutSize(Container target) {
- Insets insets=target.getInsets();
- Dimension D=target.getSize();
- int W=D.width-insets.left-insets.right;
- int L=hgap;
- int y=vgap;
- int w, h, hmax=0;
-
- for(int i=0; i<target.getComponentCount(); i++) {
- Dimension d=target.getComponent(i).getPreferredSize();
-
- w=d.width;
- h=d.height;
-
- if(L+w+hgap<W) {
- L+=w+hgap;
- if(h>hmax) hmax=h;
- } else {
- L=hgap+w+hgap;
- y+=hmax+vgap;
- hmax=0;
- if(h>hmax) hmax=h;
- }
- }
- if(target.getComponentCount()>0)
- y+=hmax+vgap;
-
- return new Dimension(W, y);
- }
-
- public void layoutContainer(Container target) {
- Insets insets=target.getInsets();
- Dimension D=target.getSize();
- int W=D.width-insets.left-insets.right;
- int L=hgap;
- int y=vgap;
- int from=0;
- int to=0;
- int w, h, hmax=0;
-
- for(int i=0; i<target.getComponentCount(); i++) {
- Dimension d=target.getComponent(i).getPreferredSize();
-
- w=d.width;
- h=d.height;
-
- if(L+w+hgap<W) {
- L+=w+hgap;
- to=i;
- if(h>hmax) hmax=h;
- } else {
- layout(target, hgap+insets.left+(W/2-L/2), y, from, to);
- L=hgap+w+hgap;
- from=i;
- to=i;
- y+=hmax+vgap;
- hmax=0;
- if(h>hmax) hmax=h;
- }
- }
-
- if(target.getComponentCount()>0)
- layout(target, hgap+insets.left+(W/2-L/2), y, from, to);
-
- /*
- if (y + hmax + vgap != D.height)
- SwingUtilities.invokeLater(new ARunAnotherLayout(target));
- */
- }
-
- public void layout(Container target, int x, int y, int from, int to) {
- int xi=x;
-
- for(int i=from; i<=to; i++) {
- Component comp=target.getComponent(i);
- Dimension d=comp.getPreferredSize();
-
- comp.setBounds(xi, y, d.width, d.height);
- xi+=d.width+hgap;
- }
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/graphics/layout/AGridLayout.java b/graphics/AtlantisJava/src/atlantis/graphics/layout/AGridLayout.java
deleted file mode 100755
index 034287a49e1..00000000000
--- a/graphics/AtlantisJava/src/atlantis/graphics/layout/AGridLayout.java
+++ /dev/null
@@ -1,214 +0,0 @@
-package atlantis.graphics.layout;
-
-import java.awt.Component;
-import java.awt.Container;
-import java.awt.Dimension;
-import java.awt.LayoutManager2;
-import java.awt.Rectangle;
-
-import javax.swing.JComponent;
-import javax.swing.SwingUtilities;
-
-import atlantis.canvas.ACanvas;
-
-/**
- * This layout manager is a simplification of the
- * <code>ConstrainedGridLayout</code> layout manager written by Charles A.
- * Loomis. This layout manager hase two modes of operation: 1) CONSTRAINED -
- * cell size is calculated by dividing the container size acording to aspect
- * ratio. 2) PREFERRED - cell size is given at creation time
- *
- * @author Dumitru Petrusca.
- */
-public class AGridLayout implements LayoutManager2
-{
- private Dimension gridSize;
- private int cellSize;
- private Dimension initialSize;
-
- public final static int CONSTRAINED = 0;
- public final static int PREFERRED = 1;
- private int layoutType;
- private boolean secondLayout;
-
- final public static String GRID_SIZE_ERROR = "Grid size must have width and height > 0.";
-
- final public static String ASPECT_RATIO_ERROR = "Aspect ratio must have width and height > 0.";
-
- final public static String CONSTRAINT_ERROR = "Constraint must be a Rectangle with positive width and height.";
-
- final public static String AGRID_LAYOUT_CONSTRAINT = "ConstrainedGridLayout.RectangularConstraint";
-
- /**
- * Creates a new GridLayout of type CONSTRAINNED.
- */
- public AGridLayout(Dimension gridSize, Dimension initialSize)
- {
- layoutType = CONSTRAINED;
- setGridSize(gridSize);
- secondLayout = true;
- this.initialSize = initialSize;
- }
-
- /**
- * Creates a new GridLayout of type PREFERRED
- */
- public AGridLayout(Dimension gridSize, int cellSize)
- {
- layoutType = PREFERRED;
- setGridSize(gridSize);
- this.cellSize = cellSize;
- secondLayout = false;
- initialSize = null;
- }
-
- private void setGridSize(Dimension gridSize)
- {
- // Check that all of the dimensions given are reasonable.
- if (gridSize.width <= 0 || gridSize.height <= 0 || gridSize.width > 100 || gridSize.height > 100)
- throw new IllegalArgumentException(GRID_SIZE_ERROR);
-
- // Copy the information into the layout manager.
- this.gridSize = new Dimension(0, 0);
- this.gridSize.setSize(gridSize);
- }
-
- public Dimension getGridSize()
- {
- return new Dimension(gridSize);
- }
-
- /**
- * Set (or reset) the constraints for the given component.
- */
- public void setConstraints(Component comp, Rectangle constraints)
- {
- if (comp instanceof JComponent)
- {
- Rectangle copy = new Rectangle(constraints);
- JComponent jc = (JComponent) comp;
-
- jc.putClientProperty(AGRID_LAYOUT_CONSTRAINT, copy);
- }
- }
-
- /**
- * Get the constraints being used for the given component.
- */
- public Rectangle getConstraints(Component comp)
- {
- Rectangle r = null;
-
- if (comp instanceof JComponent)
- {
- JComponent jc = (JComponent) comp;
- Object constraint = jc.getClientProperty(AGRID_LAYOUT_CONSTRAINT);
-
- if (constraint instanceof Rectangle)
- r = (Rectangle) constraint;
- }
-
- return (r != null) ? new Rectangle(r) : null;
- }
-
- // implementation of LayoutMamager interface
-
- public void addLayoutComponent(String name, Component comp)
- {}
-
- public void removeLayoutComponent(Component comp)
- {}
-
- public Dimension preferredLayoutSize(Container parent)
- {
- if (layoutType == CONSTRAINED)
- {
- Dimension d = parent.getSize();
- if (initialSize != null)
- {
- d = new Dimension(initialSize);
- initialSize = null;
- }
-
- int hCellSize = d.width / gridSize.width;
- int vCellSize = d.height / gridSize.height;
- if(ACanvas.getCanvas().getCurrentLayout().getName().equals("FULL SCREEN"))
- {
- return new Dimension(gridSize.width * hCellSize, gridSize.height * vCellSize);
- }
- cellSize = Math.min(hCellSize, vCellSize);
- }
-
- return new Dimension(gridSize.width * cellSize, gridSize.height * cellSize);
- }
-
- public Dimension minimumLayoutSize(Container parent)
- {
- return preferredLayoutSize(parent);
- }
-
- public void layoutContainer(Container parent)
- {
- Dimension d = parent.getSize();
- int hCellSize = d.width / gridSize.width;
- int vCellSize = d.height / gridSize.height;
- int compCount = parent.getComponentCount();
-
- for (int i = 0; i < compCount; i++)
- {
- Component comp = parent.getComponent(i);
- Rectangle r = getConstraints(comp);
-
- if (r != null)
- {
- if(ACanvas.getCanvas().getCurrentLayout().getName().equals("FULL SCREEN"))
- comp.setBounds(r.x * hCellSize, r.y * vCellSize, r.width * hCellSize, r.height * vCellSize);
- else
- comp.setBounds(r.x * cellSize, r.y * cellSize, r.width * cellSize, r.height * cellSize);
- }
- }
-
- if (secondLayout)
- SwingUtilities.invokeLater(new ARunAnotherLayout(parent));
- }
-
- // implementation of LayoutMamager2 interface
-
- /**
- * Adds the specified component to the layout, using the specified
- * constraint object.
- */
- public void addLayoutComponent(Component comp, Object constraints)
- {
- if (constraints instanceof Rectangle)
- {
- Rectangle r = (Rectangle) constraints;
-
- if (r.width <= 0 || r.height <= 0)
- throw new IllegalArgumentException(CONSTRAINT_ERROR);
-
- setConstraints(comp, r);
- }
- else if (constraints != null)
- throw new IllegalArgumentException(CONSTRAINT_ERROR);
- }
-
- public Dimension maximumLayoutSize(Container target)
- {
- return new Dimension(Integer.MAX_VALUE, Integer.MAX_VALUE);
- }
-
- public float getLayoutAlignmentX(Container target)
- {
- return 0.5f;
- }
-
- public float getLayoutAlignmentY(Container target)
- {
- return 0.5f;
- }
-
- public void invalidateLayout(Container target)
- {}
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/graphics/layout/ARunAnotherLayout.java b/graphics/AtlantisJava/src/atlantis/graphics/layout/ARunAnotherLayout.java
deleted file mode 100755
index ce1330374e3..00000000000
--- a/graphics/AtlantisJava/src/atlantis/graphics/layout/ARunAnotherLayout.java
+++ /dev/null
@@ -1,26 +0,0 @@
-package atlantis.graphics.layout;
-
-
-import java.awt.Container;
-import java.awt.Window;
-import javax.swing.SwingUtilities;
-
-
-/**
- * Used by the Layout Managers to invoke another layout operation.
- * Needed to resize the canvas preserving aspect ratio.
- */
-
-public class ARunAnotherLayout implements Runnable {
- private Container parent;
-
- public ARunAnotherLayout(Container parent) {
- this.parent=parent;
- }
-
- public void run() {
- Window window=SwingUtilities.getWindowAncestor(parent);
-
- if(window!=null) window.pack();
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/graphics/package.html b/graphics/AtlantisJava/src/atlantis/graphics/package.html
deleted file mode 100644
index 0d498ed4259..00000000000
--- a/graphics/AtlantisJava/src/atlantis/graphics/package.html
+++ /dev/null
@@ -1,6 +0,0 @@
-<html>
-<head></head>
-<body>
-<p>2D graphical classes, graphical primitives.</p>
-</body>
-</html>
diff --git a/graphics/AtlantisJava/src/atlantis/gui/AAboutDialog.java b/graphics/AtlantisJava/src/atlantis/gui/AAboutDialog.java
deleted file mode 100755
index 62546b20970..00000000000
--- a/graphics/AtlantisJava/src/atlantis/gui/AAboutDialog.java
+++ /dev/null
@@ -1,214 +0,0 @@
-package atlantis.gui;
-
-import java.awt.BorderLayout;
-import java.awt.GridLayout;
-import java.awt.Font;
-import java.awt.Color;
-import java.awt.event.ActionListener;
-import java.awt.event.ActionEvent;
-
-import javax.swing.JPanel;
-import javax.swing.JButton;
-import javax.swing.JLabel;
-import javax.swing.JTextPane;
-import javax.swing.BorderFactory;
-import javax.swing.JFrame;
-
-import atlantis.globals.AGlobals;
-import atlantis.graphics.AIcon;
-import atlantis.utils.AUtilities;
-
-
-/**
- *
- * About information dialog (Help -> About)
- *
- * @author Zdenek Maxa, Mark Stockton
- */
-public class AAboutDialog extends JFrame
-{
-
- private static JPanel a_panel1 = null;
- private static JPanel a_panel2 = null;
- private static JPanel a_panel3 = null;
- private static JPanel a_panel4 = null;
- private static JPanel a_textPanel = null;
- private static JLabel a_label1 = null;
- private static JTextPane a_label2 = null;
- private static JLabel a_label3 = null;
- private static JTextPane a_label4 = null;
-
- private static JPanel m_panel1 = null;
- private static JPanel m_panel2 = null;
- private static JPanel m_panel3 = null;
- private static JPanel m_panel4 = null;
- private static JPanel m_textPanel = null;
- private static JLabel m_label1 = null;
- private static JTextPane m_label2 = null;
- private static JTextPane m_label3 = null;
- private static JTextPane m_label4 = null;
-
- private static JPanel c_panel1 = null;
-
- private static JPanel mainPanel = null;
-
-
- private static JButton closeButton = null;
-
- private static AAboutDialog instance = null;
-
- private static final AGlobals globals = AGlobals.instance();
-
-
- private AAboutDialog(String title)
- {
- super(title);
- try
- {
- createGUI();
- pack();
- }
- catch(Exception ex)
- {
- ex.printStackTrace();
- }
-
- AIcon.setIconImage(this);
-
- } // AAboutDialog() -----------------------------------------------------
-
-
-
- private void createGUI()
- {
- // top panel - atlantis
- a_panel1 = new JPanel();
- a_panel1.setLayout(new GridLayout(1,2));
-
- // top left text panel (4 lines of text)
- a_panel2 = new JPanel();
- a_label2 = new JTextPane();
- Font font = new Font(a_panel2.getFont().getName(),
- Font.BOLD,
- a_panel2.getFont().getSize() + 6);
- a_label2.setFont(font);
- a_label2.setEditable(false);
- a_label2.setBackground(a_panel2.getBackground());
- a_label2.setText(AGlobals.instance().getVersion());
- a_panel2.add(a_label2);
-
- a_panel3 = new JPanel();
- a_label3 = new JLabel("Event display for ATLAS");
- a_panel3.add(a_label3);
-
- a_panel4 = new JPanel();
- a_label4 = new JTextPane();
- a_label4.setBackground(a_panel4.getBackground());
- a_label4.setForeground(Color.blue);
- a_label4.setText("http://www.cern.ch/atlantis" + "\n" +
- "hn-atlas-AtlantisDisplay@cern.ch");
- a_label4.setEditable(false);
- a_panel4.add(a_label4);
-
- a_textPanel = new JPanel();
- a_textPanel.setLayout(new GridLayout(3,1));
- a_textPanel.add(a_panel2);
- a_textPanel.add(a_panel3);
- a_textPanel.add(a_panel4);
-
- a_panel1.add(a_textPanel);
-
- String FILE_SEPAR = System.getProperty("file.separator");
- String homeDirectory = AGlobals.instance().getHomeDirectory();
-
- // top right atlantis image
- String path = homeDirectory + "img" + FILE_SEPAR +
- "atlantis_log.gif";
- a_label1 = new JLabel(AUtilities.getFileAsImageIcon(path));
- a_panel1.add(a_label1);
-
- // middle panel - minerva
- m_panel1 = new JPanel();
- m_panel1.setLayout(new GridLayout(1,2));
-
- // middle left minerva image
- path = homeDirectory + "img" + FILE_SEPAR +
- "minerva_log.gif";
- m_label1 = new JLabel(AUtilities.getFileAsImageIcon(path));
- m_panel1.add(m_label1);
-
- // middle right text panel
- m_panel2 = new JPanel();
- m_label2 = new JTextPane();
- m_label2.setFont(font);
- m_label2.setEditable(false);
- m_label2.setBackground(m_panel2.getBackground());
- m_label2.setText("MINERVA");
- m_panel2.add(m_label2);
-
- m_panel3 = new JPanel();
- m_label3 = new JTextPane();
- m_label3.setBackground(m_panel3.getBackground());
- m_label3.setEditable(false);
- m_label3.setText(" Masterclass INvolving Event \n Recognition Visualised with Atlantis");
- m_panel3.add(m_label3);
-
- m_panel4 = new JPanel();
- m_label4 = new JTextPane();
- m_label4.setBackground(m_panel4.getBackground());
- m_label4.setForeground(Color.blue);
- m_label4.setText("http://www.cern.ch/atlas-minerva");
- m_label4.setEditable(false);
- m_panel4.add(m_label4);
-
- m_textPanel = new JPanel();
- m_textPanel.setLayout(new GridLayout(3,1));
- m_textPanel.add(m_panel2);
- m_textPanel.add(m_panel3);
- m_textPanel.add(m_panel4);
-
- m_panel1.add(m_textPanel);
-
- // bottom panel - close button
- c_panel1 = new JPanel(new BorderLayout());
- closeButton = new JButton("Close");
- closeButton.addActionListener(new ActionListener()
- {
- public void actionPerformed(ActionEvent e)
- {
- AAboutDialog.getInstance().dispose();
- }
- });
- c_panel1.add(closeButton, BorderLayout.EAST);
- c_panel1.setBorder(BorderFactory.createEmptyBorder(15, 0, 15, 15));
-
-
- // main panel
- mainPanel = new JPanel();
- mainPanel.setLayout(new BorderLayout());
- mainPanel.add(a_panel1, BorderLayout.NORTH);
- mainPanel.add(m_panel1, BorderLayout.CENTER);
- mainPanel.add(c_panel1, BorderLayout.SOUTH);
-
- this.getContentPane().add(mainPanel, BorderLayout.CENTER);
-
- this.setResizable(false);
-
- this.setLocation(globals.getGuiFrame().getLocation());
-
- } // createGUI() --------------------------------------------------------
-
-
- public static AAboutDialog getInstance()
- {
- if(instance == null)
- {
- instance = new AAboutDialog("About Atlantis");
- }
- return instance;
-
- } // getInstance() ------------------------------------------------------
-
-
-
-} // class AAboutDialog =====================================================
diff --git a/graphics/AtlantisJava/src/atlantis/gui/ACheckBox.java b/graphics/AtlantisJava/src/atlantis/gui/ACheckBox.java
deleted file mode 100755
index f4af0033a9f..00000000000
--- a/graphics/AtlantisJava/src/atlantis/gui/ACheckBox.java
+++ /dev/null
@@ -1,33 +0,0 @@
-package atlantis.gui;
-
-import java.awt.event.ActionListener;
-import javax.swing.JCheckBox;
-
-/**
- * This class does not generate an ActionEvent
- * when the setSelected() method is called.
- */
-public class ACheckBox extends JCheckBox {
- ActionListener listener;
-
- public ACheckBox(String text) {
- super(text);
- }
-
- public ACheckBox() {
- super();
- }
-
- public void addActionListener(ActionListener l) {
- if(listener==null) {
- super.addActionListener(listener);
- listener=l;
- }
- }
-
- public void setSelected(boolean b) {
- if(listener!=null) super.removeActionListener(listener);
- super.setSelected(b);
- if(listener!=null) super.addActionListener(listener);
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/gui/ACheckNode.java b/graphics/AtlantisJava/src/atlantis/gui/ACheckNode.java
deleted file mode 100755
index e2bac2cf8a3..00000000000
--- a/graphics/AtlantisJava/src/atlantis/gui/ACheckNode.java
+++ /dev/null
@@ -1,86 +0,0 @@
-package atlantis.gui;
-
-import java.util.Iterator;
-import atlantis.parameters.AParameter;
-import atlantis.parameters.AStatusParameter;
-import atlantis.parameters.ACommandProcessor;
-import hep.wired.util.DefaultTristateTreeNode;
-import hep.wired.util.TristateCheckBox;
-
-/**
- *
- * @author Qiang
- */
-
-public class ACheckNode extends DefaultTristateTreeNode {
-
- public static final byte SINGLE_SELECTION = 0;
-
- public static final byte MULTI_SELECTION = 1;
-
- private byte selectionMode;
-
- private AParameter parameter;
-
- public ACheckNode(Object userObject, boolean selectionValue, byte selectionMode, AParameter parameter) {
- super(userObject, selectionValue, true);
- setSelectionMode(selectionMode);
- this.parameter = parameter;
- }
-
- public void setSelectionMode(byte selectionMode) {
- this.selectionMode = selectionMode;
- }
-
- public byte getSelectionMode() {
- return this.selectionMode;
- }
-
- public AParameter getParameter(){
- return this.parameter;
- }
-
- public void updateState(){
- if(children!=null){
- int checkedNumber = 0;
- for(Iterator it=children.iterator(); it.hasNext();){
- ACheckNode aChildNode = (ACheckNode)it.next();
- aChildNode.updateState();
- if(aChildNode.isSelected())
- checkedNumber++;
- }
- if(checkedNumber==0)
- this.setSelected(false);
- else
- this.setSelected(true);
- } else{
- ACheckBox cellComponent = (ACheckBox)getUserObject();
- cellComponent.setSelected(getParameter().getStatus());
- setSelected(cellComponent.isSelected());
- }
- }
-
- public void getClicked(boolean selectionFlag, boolean statusChange) {
- setSelected(selectionFlag);
- if((parameter instanceof AStatusParameter) && statusChange){
- // a leaf node is found here
- AStatusParameter theStatusParameter = (AStatusParameter)parameter;
- ACommandProcessor.receive(theStatusParameter.getName());
- theStatusParameter.apply();
- } else{
- // parameter is either AStatusRootParameter or AStatusGroupParameter
- if((selectionMode==MULTI_SELECTION) && (children!=null)){
- ((TristateCheckBox)this.getUserObject()).setSelected(selectionFlag);
- for(Iterator it=children.iterator(); it.hasNext();){
- ACheckNode aChildNode = (ACheckNode)it.next();
- // either AStatusGrooupParameter node or AStatusParameter node
- aChildNode.getClicked(selectionFlag, !(aChildNode.isSelected()==selectionFlag));
- }
- }
- }
- if(parent!=null){
- ((ACheckNode)parent).updateState();
- }
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/gui/AClosingConfirmationDialog.java b/graphics/AtlantisJava/src/atlantis/gui/AClosingConfirmationDialog.java
deleted file mode 100755
index 3872b0960e5..00000000000
--- a/graphics/AtlantisJava/src/atlantis/gui/AClosingConfirmationDialog.java
+++ /dev/null
@@ -1,63 +0,0 @@
-package atlantis.gui;
-
-import java.awt.Frame;
-import java.awt.event.WindowAdapter;
-import java.awt.event.WindowEvent;
-import javax.swing.JOptionPane;
-
-import atlantis.config.ADefaultValues;
-import atlantis.utils.ALogger;
-
-/**
- *
- * Atlantis application closing confirmation dialog.
- * All Atlantis closing actions can be added here and this
- * class shall be used for closing the application.
- *
- */
-public class AClosingConfirmationDialog extends WindowAdapter
-{
- private static ALogger logger = ALogger.getLogger(AClosingConfirmationDialog.class);
-
- private Frame adaptee;
-
-
- public AClosingConfirmationDialog(Frame adaptee)
- {
- this.adaptee = adaptee;
-
- } // AClosingConfirmationDialog() ---------------------------------------
-
-
-
- public void windowClosing(WindowEvent e)
- {
- exitApp();
-
- } // windowClosing() ----------------------------------------------------
-
-
-
- public void exitApp()
- {
-
- String msg = "Do you really want to quit Atlantis?";
- int i = JOptionPane.showConfirmDialog(adaptee, msg, "Exit Atlantis",
- JOptionPane.YES_NO_OPTION, JOptionPane.QUESTION_MESSAGE, null);
- if(i == JOptionPane.YES_OPTION)
- {
- logger.debug("Shutting down, going to save runtime values...");
- ADefaultValues.saveRuntimeValues();
- logger.warn("Shutting down, calling System.exit(0)");
- System.exit(0);
- }
- else
- {
- return;
- }
-
- } // exitApp() ----------------------------------------------------------
-
-
-
-} // class AClosingConfirmationDialog =======================================
diff --git a/graphics/AtlantisJava/src/atlantis/gui/AColorComboBoxRenderer.java b/graphics/AtlantisJava/src/atlantis/gui/AColorComboBoxRenderer.java
deleted file mode 100755
index d0eed9427aa..00000000000
--- a/graphics/AtlantisJava/src/atlantis/gui/AColorComboBoxRenderer.java
+++ /dev/null
@@ -1,126 +0,0 @@
-package atlantis.gui;
-
-import java.awt.Color;
-import java.awt.Component;
-import java.awt.Dimension;
-import java.awt.Graphics;
-import javax.swing.Icon;
-import javax.swing.JLabel;
-import javax.swing.ToolTipManager;
-import javax.swing.BorderFactory;
-import javax.swing.JList;
-import javax.swing.ListCellRenderer;
-import javax.swing.border.Border;
-
-import atlantis.graphics.colormap.AColorMap;
-
-/**
- * The class used as a renderer when displaying the colors in the UI.
- */
-public class AColorComboBoxRenderer extends JLabel
- implements ListCellRenderer {
-
- private ColorIcon icon=new ColorIcon();
- private Border selectedBorder;
- private Border deselectedBorder=BorderFactory.createEmptyBorder(2, 2, 2, 2);
-
- public Component getListCellRendererComponent(
- JList list, Object value, int index,
- boolean isSelected, boolean cellHasFocus) {
-
- int colorIndex=((Integer)value).intValue();
- Color[] colorMap=AColorMap.getColors();
- Color color=colorMap[colorIndex];
-
- icon.setColor(color);
- setIcon(icon);
- setText(""+((Integer)value).intValue());
-
- if(isSelected) {
- selectedBorder=BorderFactory.createLineBorder(list.getSelectionBackground(), 2);
-
- setBorder(selectedBorder);
-
- ToolTipManager.sharedInstance().setInitialDelay(1);
- ToolTipManager.sharedInstance().setReshowDelay(1);
-
- String message;
-
- if(color.equals(Color.black))
- message="Black: ";
- else if(color.equals(Color.blue))
- message="Blue: ";
- else if(color.equals(Color.cyan))
- message="Cyan: ";
- else if(color.equals(Color.darkGray))
- message="DarkGray: ";
- else if(color.equals(Color.gray))
- message="Gray: ";
- else if(color.equals(Color.green))
- message="Green: ";
- else if(color.equals(Color.lightGray))
- message="LightGray: ";
- else if(color.equals(Color.magenta))
- message="Magenta: ";
- else if(color.equals(Color.orange))
- message="Orange: ";
- else if(color.equals(Color.pink))
- message="Pink: ";
- else if(color.equals(Color.red))
- message="Red: ";
- else if(color.equals(Color.white))
- message="White: ";
- else if(color.equals(Color.yellow))
- message="Yellow: ";
- else
- message="";
-
- list.setToolTipText(message+color.getRed()+", "+color.getGreen()+", "+color.getBlue());
- } else setBorder(deselectedBorder);
-
- return this;
- }
-
- private static class ColorIcon implements Icon {
- private int w, h;
- private Color color;
-
- public ColorIcon() {
- this(Color.gray, 50, 15);
- }
-
- public ColorIcon(Dimension d) {
- this.w=d.width;
- this.h=d.height;
- }
-
- public ColorIcon(Color color, int w, int h) {
- this.color=color;
- this.w=w;
- this.h=h;
- }
-
- public void paintIcon(Component c, Graphics g, int x, int y) {
- g.setColor(Color.black);
- g.drawRect(x, y, w-1, h-1);
- g.setColor(color);
- g.fillRect(x+1, y+1, w-2, h-2);
- }
-
- public Color getColor() {
- return color;
- }
-
- public void setColor(Color color) {
- this.color=color;
- }
-
- public int getIconWidth() {
- return w;
- }
-
- public int getIconHeight() {
- return h;
- }
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/gui/AColorHelpDialog.java b/graphics/AtlantisJava/src/atlantis/gui/AColorHelpDialog.java
deleted file mode 100755
index 695a2814bd3..00000000000
--- a/graphics/AtlantisJava/src/atlantis/gui/AColorHelpDialog.java
+++ /dev/null
@@ -1,260 +0,0 @@
-package atlantis.gui;
-
-import java.awt.Color;
-import java.awt.GridLayout;
-import java.awt.Toolkit;
-import java.awt.event.WindowEvent;
-import java.awt.event.WindowListener;
-
-import javax.swing.JFrame;
-import javax.swing.JTextField;
-
-import atlantis.event.AEvent;
-import atlantis.event.AEventManager;
-import atlantis.globals.AGlobals;
-import atlantis.graphics.AIcon;
-import atlantis.graphics.colormap.AColorMap;
-import atlantis.parameters.APar;
-
-/**
- * The help dialog displays the current color of objects
- *
- * @author Mark Stockton
- */
-public class AColorHelpDialog extends JFrame implements WindowListener
-{
- private static JTextField[] textField;
- public static Color[] colorMap = AColorMap.getColors();
- private static AColorHelpDialog instance = null;
-
- private static APar parameterStore = APar.instance();
- private static AEventManager eventManager = AEventManager.instance();
-
- public static AColorHelpDialog getInstance()
- {
- if (AGlobals.isAtlantisHeadless()) {
- return null;
- }
- if (instance == null)
- instance = new AColorHelpDialog();
- return instance;
- }
-
- public void update()
- {
- if(!this.isVisible())
- return;
- getContentPane().removeAll();
- validate();
-
- String[] dataObjectsToDisplay={"RVx", "TRT", "SiCluster", "SiClusterRDO", "S3D", "PixelCluster", "PixelRDO", "TrigS3D",
- "MDT", "CSC", "RPC", "TGC",
- "EmTauROI", "JetROI", "MuonROI", "LVL1TriggerTower", "LVL1JetElement",
- "STr", "SNP", "SMTr", "SVx"};
- String[] dataObjectsWithCollectionsToDisplay={"InDetTrack", "InDetSegment", "Cluster", "MuonTrack",
- "MuonSegment", "Jet", "ETMis", "BJet","Electron","Muon","Photon","TauJet","CompositeParticle"};
- String[] geometryObjectsToDisplay={"PIXFill", "SILFill", "TRTFill", "SolFill", "ECALFill",
- "HCALFill", "RPCFill", "TGCFill", "MDTFill", "CSCFill", "BkgFill"};
-
- int numObjects = Math.max(dataObjectsWithCollectionsToDisplay.length,dataObjectsToDisplay.length);
- int numOfColumns = 4;
- getContentPane().setLayout(new GridLayout(numObjects+1,numOfColumns));
- textField = new JTextField[(numObjects+1)*4];
- AEvent event = eventManager.getCurrentEvent();
-
- //table column titles
- fillTextField(0, Color.white, Color.black, " Geometry color");
- fillTextField(1, Color.white, Color.black, " Color of objects without collections");
- fillTextField(2, Color.white, Color.black, " Color of objects with collections");
- fillTextField(3, Color.white, Color.black, " Object Collection");
-
- //loop over objects
- for(int j=0; j<numObjects; j++)
- {
- int i=4*j + 4;
- //display geometry color
- if(j<geometryObjectsToDisplay.length)
- {
- String source = "Det";
- if(geometryObjectsToDisplay[j].equals("BkgFill"))
- source = "Color";
- Color backgroundColor=colorMap[parameterStore.get(source, geometryObjectsToDisplay[j]).getI()];
- //display screen name
- String text=parameterStore.get(source, geometryObjectsToDisplay[j]).getScreenName();
- fillTextField(i, backgroundColor, text);
- }else{
- fillTextField(i);//nothing to display
- }
-
- i++;
- //display object without collection color
- if(j<dataObjectsToDisplay.length){
- fillTextField(i,dataObjectsToDisplay[j]);
- }else{
- fillTextField(i);//nothing to display
- }
-
- i++;
- //display object with collection color
- if(j<dataObjectsWithCollectionsToDisplay.length){
- fillTextField(i,dataObjectsWithCollectionsToDisplay[j]);
- }else{
- fillTextField(i);//nothing to display
- }
-
- //display object collection
- i++;
- if(j<dataObjectsWithCollectionsToDisplay.length){
- //get collections
- String[] collections=event.getActiveCollectionNames(dataObjectsWithCollectionsToDisplay[j]);
- String text;
- //check is on/has collectons/not all selected
- if(!parameterStore.get("Data", dataObjectsWithCollectionsToDisplay[j]).getStatus() ||
- collections==null || collections.length==0)
- text = "n/a";
- else if(collections.length>1)
- text = ">1 selected";
- else
- {
- text = collections[0].substring(dataObjectsWithCollectionsToDisplay[j].length());
- }
- fillTextField(i, Color.white, Color.black, text);
-
- }else{
- fillTextField(i);//nothing to display
- }
- }
-
- invalidate();
- pack();
- }
-
- /**
- * Fills the text field with chosen colours and text
- * foreground colour and text can be null to just fill background
- *
- * @param index - textfield index
- * @param background - background colour
- * @param foreground - foreground color
- * @param text - text to display
- */
- private void fillTextField(int index, Color background, Color foreground, String text)
- {
- if(textField[index]==null)
- textField[index]=new JTextField();
- textField[index].setEditable(false);
- textField[index].setBackground(background);
- if(foreground!=null)
- textField[index].setForeground(foreground);
- if(text!=null)
- textField[index].setText(text);
- getContentPane().add(textField[index]);
- }
-
- /**
- * Will fill a blank text field
- *
- * @param index - textfield index
- */
- private void fillTextField(int index)
- {
- //nothing to display so set color to be the
- //same as the outline color of the text boxes
- fillTextField(index, (new Color(184,207,229)), null, null);
- }
-
- /**
- * Automatically decides the forground text colour
- * depending on the background color
- *
- * @param index - textfield index
- * @param background - background colour
- * @param text - text to display
- */
- private void fillTextField(int index, Color background, String text)
- {
- //find out if too dark for black text
- if( background.getBlue()==background.getRed()
- && background.getBlue()==background.getGreen()
- && background.getBlue()<=128)
- fillTextField(index, background, Color.white, text);
- else
- fillTextField(index, background, Color.black, text);
- }
-
- /**
- * Get information from object for background
- * colour and objedct name + status gives the text
- *
- * @param index - textfield index
- * @param object - name of object
- */
- private void fillTextField(int index, String object)
- {
- //if color by constant or has no colour option (e.g. vertex)
- if(parameterStore.get(object, "ColorFunction")==null
- || parameterStore.get(object, "ColorFunction").getI()==0)
- {
- Color backgroundColor=colorMap[parameterStore.get(object, "Constant").getI()];
- String text = object;
- if(!parameterStore.get("Data", object).getStatus())
- text += " - data type not active";
- fillTextField(index, backgroundColor, text);
- }
- else
- {
- String text = object;
- if(parameterStore.get("Data", object).getStatus())
- text += " is not being colored constant";
- else
- text += " - data type not active";
- fillTextField(index, Color.white, Color.black, text);
- }
- }
-
- private AColorHelpDialog()
- {
- this.setTitle("Current window Geometry and Object colors and Object Collection");
- AIcon.setIconImage(this);
- setDefaultCloseOperation(DISPOSE_ON_CLOSE);
-
- this.update();
- this.setResizable(false);
- addWindowListener(this);
-
- // set the initial location
- int screenWidth = Math.round((float) Toolkit.getDefaultToolkit().getScreenSize().getWidth());
- int screenHeight = Math.round((float) Toolkit.getDefaultToolkit().getScreenSize().getHeight());
- this.setLocation((int) Math.max(0, 0.1*screenWidth), (int) Math.max(0, 0.1*screenHeight));
- }
-
- public void dispose()
- {
- instance = null;
- super.dispose();
- }
-
- public void windowOpened(WindowEvent e)
- {
- this.update();
- }
-
- public void windowClosing(WindowEvent e)
- {}
-
- public void windowClosed(WindowEvent e)
- {}
-
- public void windowIconified(WindowEvent e)
- {}
-
- public void windowDeiconified(WindowEvent e)
- {}
-
- public void windowActivated(WindowEvent e)
- {}
-
- public void windowDeactivated(WindowEvent e)
- {}
-
-}
\ No newline at end of file
diff --git a/graphics/AtlantisJava/src/atlantis/gui/AColorMapDialog.java b/graphics/AtlantisJava/src/atlantis/gui/AColorMapDialog.java
deleted file mode 100755
index e0b91297e22..00000000000
--- a/graphics/AtlantisJava/src/atlantis/gui/AColorMapDialog.java
+++ /dev/null
@@ -1,109 +0,0 @@
-package atlantis.gui;
-
-import java.awt.BorderLayout;
-import java.awt.Frame;
-import java.awt.GridLayout;
-import java.awt.Toolkit;
-import java.awt.event.ActionEvent;
-import java.awt.event.ActionListener;
-
-import javax.swing.BorderFactory;
-import javax.swing.ButtonGroup;
-import javax.swing.JButton;
-import javax.swing.JDialog;
-import javax.swing.JPanel;
-import javax.swing.JRadioButton;
-
-import atlantis.canvas.ACanvas;
-import atlantis.globals.AGlobals;
-import atlantis.graphics.colormap.AColorMap;
-
-/**
- * This dialog is displayed when the user wants to change the current color set.
- */
-public class AColorMapDialog extends JDialog implements ActionListener
-{
- private JPanel choosePanel;
- private JPanel buttonsPanel;
- private JButton okButton, cancelButton;
- private JRadioButton selected;
-
- private static final AGlobals globals = AGlobals.instance();
-
- public AColorMapDialog()
- {
- super(globals.getGuiFrame(), "Select Map Dialog", true);
- setDefaultCloseOperation(DISPOSE_ON_CLOSE);
- setResizable(false);
-
- choosePanel = new JPanel();
- choosePanel.setBorder(BorderFactory.createTitledBorder(" Select Color Map "));
-
- ButtonGroup group = new ButtonGroup();
-
- choosePanel.setLayout(new GridLayout(5, 1));
- for (int i = 0; i < AColorMap.getMapNames().length - 2; i++)
- { // quick fix to not select hitcolor CT
- JRadioButton r = new JRadioButton(AColorMap.getMapNames()[i]);
-
- r.addActionListener(this);
- if (AColorMap.getColorMap() == i)
- {
- selected = r;
- r.setSelected(true);
- }
- else
- r.setSelected(false);
- group.add(r);
- choosePanel.add(r);
- }
- getContentPane().setLayout(new BorderLayout());
- getContentPane().add(choosePanel, BorderLayout.CENTER);
-
- okButton = new JButton("OK");
- okButton.addActionListener(new ActionListener()
- {
- public void actionPerformed(ActionEvent e)
- {
- AColorMap.setColorMap(selected.getText());
- ACanvas.getCanvas().repaintAllFromScratch();
- dispose();
- }
- });
-
- cancelButton = new JButton("Cancel");
- cancelButton.addActionListener(new ActionListener()
- {
- public void actionPerformed(ActionEvent e)
- {
- dispose();
- }
- });
-
- buttonsPanel = new JPanel();
- buttonsPanel.add(okButton);
- buttonsPanel.add(cancelButton);
- getContentPane().add(buttonsPanel, BorderLayout.SOUTH);
- pack();
-
- // set the initial location
- Frame owner = globals.getGuiFrame();
- int guiWidth = owner.getWidth();
- int guiHeight = owner.getHeight();
- int guiX = owner.getX();
- int dialogWidth = (int) this.getPreferredSize().getWidth();
- int dialogHeight = (int) this.getPreferredSize().getHeight();
- int screenWidth = Math.round((float) Toolkit.getDefaultToolkit().getScreenSize().getWidth());
- if(guiX+guiWidth+(dialogWidth-guiWidth)/2>screenWidth)
- this.setLocation(Math.max(0, screenWidth - dialogWidth), Math.max(0, (guiHeight - dialogHeight) / 3));
- else
- this.setLocation(Math.max(0, guiX + (guiWidth - dialogWidth) / 2), Math.max(0, (guiHeight - dialogHeight) / 3));
- setVisible(true);
- }
-
- public void actionPerformed(ActionEvent e)
- {
- selected = (JRadioButton) e.getSource();
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/gui/AColorMapEditor.java b/graphics/AtlantisJava/src/atlantis/gui/AColorMapEditor.java
deleted file mode 100755
index 1c534d12967..00000000000
--- a/graphics/AtlantisJava/src/atlantis/gui/AColorMapEditor.java
+++ /dev/null
@@ -1,281 +0,0 @@
-package atlantis.gui;
-
-import java.awt.BorderLayout;
-import java.awt.Color;
-import java.awt.Font;
-import java.awt.Frame;
-import java.awt.GridLayout;
-import java.awt.Toolkit;
-import java.awt.event.ActionEvent;
-import java.awt.event.ActionListener;
-import java.awt.event.MouseAdapter;
-import java.awt.event.MouseEvent;
-import java.awt.event.MouseListener;
-
-import javax.swing.BorderFactory;
-import javax.swing.JButton;
-import javax.swing.JColorChooser;
-import javax.swing.JComponent;
-import javax.swing.JDialog;
-import javax.swing.JLabel;
-import javax.swing.JPanel;
-import javax.swing.SwingUtilities;
-
-import atlantis.canvas.ACanvas;
-import atlantis.globals.AGlobals;
-import atlantis.graphics.colormap.AColorMap;
-import atlantis.graphics.colormap.MappedColor;
-import atlantis.graphics.layout.AFlowLayout;
-import atlantis.graphics.dnd.ADnDLabel;
-import atlantis.graphics.dnd.ADragListener;
-import atlantis.utils.AUtilities;
-
-/**
- * The dialog allows the user to edit the colors maps (at runtime).
- */
-public class AColorMapEditor extends JDialog implements ADragListener
-{
- private static AColorMapEditor instance;
- private ADnDLabel[][] labels = new ADnDLabel[AColorMap.getNumMaps()][AColorMap.getNumColors()];
- private int colorMap;
- private int index;
- private MappedColor previousColor;
- private ADnDLabel source;
-
- private JPanel colorPanel, buttonsPanel;
- private JButton okButton, applyButton, cancelButton;
-
- private static final AGlobals globals = AGlobals.instance();
-
- private AColorMapEditor()
- {
- super(globals.getGuiFrame(), "Color Map Editor", false);
- setDefaultCloseOperation(DISPOSE_ON_CLOSE);
- setResizable(false);
- colorPanel = new JPanel();
- colorPanel.setLayout(new GridLayout(AColorMap.getNumColors() + 1, AColorMap.getNumMaps() + 1, 0, 0));
-
- // creating the names row
- JLabel padding = new JLabel("");
- colorPanel.add(padding);
- for (int i = 0; i < AColorMap.getNumMaps(); i++)
- {
- JLabel label = new JLabel(" " + AColorMap.getMapNames()[i] + " ", JLabel.CENTER);
- label.setFont(new Font("Dialog", Font.BOLD, 14));
- colorPanel.add(label);
- }
-
- // creating the color table
- Color[] col;
- MouseListener labelMouseListener = new LabelMouseListener();
-
- for (int j = 0; j < AColorMap.getNumColors(); j++)
- {
- JLabel label = new JLabel("" + j, JLabel.CENTER);
- label.setFont(new Font("Dialog", Font.BOLD, 14));
- colorPanel.add(label);
- for (int i = 0; i < AColorMap.getNumMaps(); i++)
- {
- col = AColorMap.getColors(i);
- labels[i][j] = new ADnDLabel("text", false);
- labels[i][j].addDragListener(this);
- labels[i][j].setOpaque(true);
- labels[i][j].setBackground(col[j]);
- labels[i][j].setForeground(col[j]);
- labels[i][j].setToolTipText(col[j].getRed() + ", " + col[j].getGreen() + ", " + col[j].getBlue());
- setLineBorder(labels[i][j]);
- labels[i][j].addMouseListener(labelMouseListener);
- colorPanel.add(labels[i][j]);
- }
- }
-
- buttonsPanel = new JPanel();
- buttonsPanel.setLayout(new AFlowLayout(10, 10));
-
- okButton = new JButton("OK");
- okButton.addActionListener(new ActionListener()
- {
- public void actionPerformed(ActionEvent e)
- {
- applyColors();
- dispose();
- instance = null;
- }
- });
- buttonsPanel.add(okButton);
-
- applyButton = new JButton("Apply");
- applyButton.addActionListener(new ActionListener()
- {
- public void actionPerformed(ActionEvent e)
- {
- applyColors();
- }
- });
- buttonsPanel.add(applyButton);
-
- cancelButton = new JButton("Cancel");
- cancelButton.addActionListener(new ActionListener()
- {
- public void actionPerformed(ActionEvent e)
- {
- dispose();
- instance = null;
- }
- });
- buttonsPanel.add(cancelButton);
-
- getContentPane().setLayout(new BorderLayout());
- getContentPane().add(colorPanel, BorderLayout.CENTER);
- getContentPane().add(buttonsPanel, BorderLayout.SOUTH);
- pack();
-
- // set the initial location
- Frame owner = globals.getGuiFrame();
- int guiWidth = owner.getWidth();
- int guiHeight = owner.getHeight();
- int guiX = owner.getX();
- int dialogWidth = (int) this.getPreferredSize().getWidth();
- int dialogHeight = (int) this.getPreferredSize().getHeight();
- int screenWidth = Math.round((float) Toolkit.getDefaultToolkit().getScreenSize().getWidth());
- if(guiX+guiWidth+(dialogWidth-guiWidth)/2>screenWidth)
- this.setLocation(Math.max(0, screenWidth - dialogWidth), Math.max(0, (guiHeight - dialogHeight) / 3));
- else
- this.setLocation(Math.max(0, guiX + (guiWidth - dialogWidth) / 2), Math.max(0, (guiHeight - dialogHeight) / 3));
- setVisible(true);
- }
-
- public static AColorMapEditor getInstance()
- {
- if (instance == null)
- {
- instance = new AColorMapEditor();
- }
- return instance;
- }
-
- public void updateColors()
- {
- if (instance != null)
- {
- MappedColor[][] maps = AColorMap.getMaps();
- for (int i = 0; i < maps.length; i++)
- for (int j = 0; j < maps[i].length; j++)
- {
- Color c = maps[i][j];
-
- labels[i][j].setBackground(c);
- labels[i][j].setForeground(c);
- labels[i][j].setToolTipText(c.getRed() + ", " + c.getGreen() + ", " + c.getBlue());
- }
- repaint();
- }
- }
-
- public void dragPerformed(Object from, Object to, int action)
- {
- ADnDLabel fromLabel = (ADnDLabel) from;
- ADnDLabel toLabel = (ADnDLabel) to;
-
- toLabel.setBackground(fromLabel.getBackground());
- }
-
- class LabelMouseListener extends MouseAdapter
- {
- public void mouseClicked(MouseEvent e)
- {
- if (SwingUtilities.isLeftMouseButton(e))
- {
- source = (ADnDLabel) e.getSource();
- Color color = JColorChooser.showDialog(instance, "Color Map Editor - Chooser", source.getBackground());
- if (color != null)
- {
- source.setBackground(color);
- source.setForeground(color);
- setLineBorder(source);
- source.setToolTipText(color.getRed() + ", " + color.getGreen() + ", " + color.getBlue());
- }
- }
- }
-
- public void mousePressed(MouseEvent e)
- {
- source = (ADnDLabel) e.getSource();
- getPosition();
-
- if (AUtilities.isRightMouseButton(e))
- {
- if (index < 8)
- for (int j = 8; j < AColorMap.getNumColors(); j++)
- labels[colorMap][j].setBackground(labels[colorMap][index].getBackground());
- else
- for (int j = 0; j < 8; j++)
- labels[colorMap][j].setForeground(labels[colorMap][index].getForeground());
-
- }
- else if (SwingUtilities.isMiddleMouseButton(e))
- {
- MappedColor[][] maps = AColorMap.getMaps();
- previousColor = maps[colorMap][index];
- MappedColor c = maps[colorMap][index];
-
- if (c.getGreen() > 128)
- maps[colorMap][index] = maps[colorMap][AColorMap.BK];
- else
- maps[colorMap][index] = maps[colorMap][AColorMap.WH];
- ACanvas.getCanvas().repaintAllFromScratch();
- }
- }
-
- public void mouseReleased(MouseEvent e)
- {
- if (AUtilities.isRightMouseButton(e))
- {
- if (index < 8)
- for (int j = 8; j < AColorMap.getNumColors(); j++)
- labels[colorMap][j].setBackground(labels[colorMap][j].getForeground());
- else
- for (int j = 0; j < 8; j++)
- labels[colorMap][j].setForeground(labels[colorMap][j].getBackground());
- }
- else if (SwingUtilities.isMiddleMouseButton(e))
- {
- MappedColor[][] maps = AColorMap.getMaps();
- maps[colorMap][index] = previousColor;
- ACanvas.getCanvas().repaintAllFromScratch();
- }
- }
- }
-
- private void setLineBorder(JComponent comp)
- {
- comp.setBorder(BorderFactory.createLineBorder(new Color(207, 207, 207), 3));
- }
-
- private void getPosition()
- {
- for (int i = 0; i < AColorMap.getNumMaps(); i++)
- for (int j = 0; j < AColorMap.getNumColors(); j++)
- if (labels[i][j] == source)
- {
- colorMap = i;
- index = j;
- break;
- }
- }
-
- private void applyColors()
- {
- MappedColor[][] maps = AColorMap.getMaps();
- for (int i = 0; i < maps.length; i++)
- for (int j = 0; j < maps[i].length; j++)
- {
- Color c = labels[i][j].getBackground();
-
- maps[i][j] = new MappedColor(c.getRed(), c.getGreen(), c.getBlue(), j);
- }
- AGUI.getGUI().repaintTable();
- ACanvas.getCanvas().repaintAllFromScratch();
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/gui/AComboBox.java b/graphics/AtlantisJava/src/atlantis/gui/AComboBox.java
deleted file mode 100755
index d91a35879b6..00000000000
--- a/graphics/AtlantisJava/src/atlantis/gui/AComboBox.java
+++ /dev/null
@@ -1,51 +0,0 @@
-package atlantis.gui;
-
-
-import java.awt.event.ItemListener;
-import javax.swing.JComboBox;
-
-
-/**
- * This class does not generate an ItemEvent
- * when the setSelectedItem() method is called.
- */
-
-public class AComboBox extends JComboBox {
- private ItemListener listener;
-
- /**
- * Just calls the superclass constructor.
- */
- public AComboBox() {
- super();
- }
-
- /**
- * Set the GUIItemListener to be informed of ItemEvents.
- * Only one listener is allowed.
- * @param aListener
- */
- public void setGUIItemListener(ItemListener aListener) {
- // Remove any existing listeners.
- for (ItemListener listener : this.getItemListeners()) this.removeItemListener(listener);
- super.addItemListener(aListener);
- listener=aListener;
- }
-
- /**
- * Check whether the GUIItemListener has already been set.
- * @return true if this AComboBox has a GUIItemListener
- */
- public boolean hasGUIItemListener() {return (listener!=null);}
-
- /**
- * Set the selected item without telling any item listeners.
- * @param item
- */
- public void setGUISelectedItem(Object item) {
- if(listener!=null) super.removeItemListener(listener);
- super.setSelectedItem(item);
- if(listener!=null) super.addItemListener(listener);
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/gui/AConfigWriter.java b/graphics/AtlantisJava/src/atlantis/gui/AConfigWriter.java
deleted file mode 100755
index a903e939ef4..00000000000
--- a/graphics/AtlantisJava/src/atlantis/gui/AConfigWriter.java
+++ /dev/null
@@ -1,417 +0,0 @@
-package atlantis.gui;
-
-import java.awt.geom.Point2D;
-import java.io.BufferedReader;
-import java.io.InputStreamReader;
-import java.io.FileReader;
-import java.io.IOException;
-import java.io.InputStream;
-import java.util.Vector;
-
-import javax.swing.JOptionPane;
-
-import atlantis.canvas.ACanvas;
-import atlantis.canvas.AWindow;
-import atlantis.parameters.APar;
-import atlantis.parameters.AParameter;
-import atlantis.parameters.AParametersGroup;
-import atlantis.utils.AAtlantisException;
-import atlantis.utils.ALogger;
-import atlantis.utils.AUtilities;
-
-/**
- *
- * <ul><li>Reads the configuration file (given file name) and makes the corrections
- * according to the actual configuration which might have been changed by the
- * user.</li>
- * <li>Reads parameters differences (values from the parameters store).</li>
- * <li>Reads canvas / window configuration.</li>
- * <li>Creates XML config files from three above parts.</li></ul>
- *
- * <p>Writes out the current status. This is not a robust piece of code and make
- * break if the format of config.xml is changed by hand.
- * This class should throw an exception if there is a problem.
- * </p>
- *
- * @author Gary Taylor, Zdenek Maxa
- */
-public class AConfigWriter
-{
-
- private static ALogger logger = ALogger.getLogger(AConfigWriter.class);
-
- protected static APar parameterStore = APar.instance();
-
- private AConfigWriter()
- {
- }
-
- /**
- * Main method from the class
- * @param sourceFile String
- * @return String
- */
- public static String getConfiguration(String sourceFile)
- {
- logger.trace("Trying to read the distribution configuration ...");
- String config = null;
- StringBuffer output = new StringBuffer("");
-
- config = readConfiguration(sourceFile);
-
- if(config != null)
- {
- logger.debug("Loading source configuration successful.");
- output.append(config);
- output.append(getParametersDifferences());
- output.append(getWindowCorners());
- output.append("\n</AtlantisConfiguration>\n");
- return output.toString();
- }
- else
- {
- logger.error("Loading source configuration failed.");
- return null;
- }
- } // getConfiguration() -------------------------------------------------
-
-
-
- private static String getParametersDifferences()
- {
- StringBuffer output = new StringBuffer("");
-
- output.append("\n\n");
- output.append("\t<ParameterDifferences>\n");
-
- AParametersGroup[][] group = parameterStore.getUIGroups();
- for(int i = 0; i < group.length; i++)
- {
- for(int j = 0; j < group[i].length; j++)
- {
- Vector v = group[i][j].getParameters(999);
- for(int k = 0; k < v.size(); ++k)
- {
- output.append(((AParameter)v.elementAt(k)).getDifferences(group[i][j].getGroupName()));
- }
- }
- }
- output.append("\t</ParameterDifferences>\n\n");
-
- return output.toString();
-
- } // getParametersDifferences() -----------------------------------------
-
-
-
- private static String getWindowCorners()
- {
- StringBuffer output = new StringBuffer("");
-
- output.append("\n\n");
- output.append("\t<WindowCorners>\n");
-
- String[] windowNames = ACanvas.getCanvas().getKnownWindowNames();
-
- for(int i = 0; i < windowNames.length; i++)
- {
- Point2D.Double[] corners =
- ACanvas.getCanvas().getWindow(windowNames[i]).getUserCorners();
- if(corners != null)
- {
- output.append("\t\t<CORNERS windowName=\"" +
- windowNames[i] + "\"");
- for(int j = 0; j < corners.length; ++j)
- {
- output.append(" x" + j + "=\"" + corners[j].getX() + "\"");
- output.append(" y" + j + "=\"" + corners[j].getY() + "\"");
- }
- output.append("/>\n");
- }
- }
-
- output.append("\t</WindowCorners>\n\n\n");
-
- return output.toString();
- } // getWindowCorners() -------------------------------------------------
-
-
- // Read one logic line from xml file
- // contain <....> or <..../>
- private static String readLogicLine(BufferedReader reader) throws IOException
- {
- String startLine = reader.readLine();
- if(startLine == null)
- return null;
-
- StringBuffer logicLine = new StringBuffer(startLine);
-
- while(logicLine.indexOf("<") >= 0 && logicLine.indexOf(">") < 0)
- {
- logicLine.append("\n");
- logicLine.append(reader.readLine());
- }
- return logicLine.toString();
- }
-
-
- private static String readConfiguration(String fileName)
- {
- String groupName = "";
- String parameterName = "";
- AParameter aParam = null;
- BufferedReader curr = null;
- String str;
- StringBuffer buffer = new StringBuffer(""); // working buffer
- StringBuffer output = new StringBuffer(""); // final result
- boolean inComment = false;
-
- try
- {
- logger.debug("Trying to open configuration file: " + fileName);
- InputStream fis = AUtilities.getFileAsStream(fileName);
- InputStreamReader isr = new InputStreamReader(fis);
- curr = new BufferedReader(isr, 10000);
-
- while((str = readLogicLine(curr)) != null)
- {
- buffer = new StringBuffer(str);
- // in a comment ?
- if(buffer.indexOf("<!--") >= 0)
- {
- inComment = true;
- }
- if(buffer.indexOf("-->") >= 0)
- {
- inComment = false;
- }
- if(!inComment)
- {
- // nearly finished writing
- if(buffer.indexOf("</Parameters>") >= 0)
- {
- output.append(buffer);
- output.append("\n");
- break;
- }
-
- // modification in the initialisation
- if(buffer.indexOf("<Canvas") >= 0) {
- buffer = replace(buffer, "startupLayout", ACanvas.getCanvas().getCurrentLayout().getName());
- String ar = Double.toString(ACanvas.getCanvas().getAspectRatio());
- buffer = replace(buffer, "aspectRatio", ar);
- }
-
- if(buffer.indexOf("<UsedWindow") >= 0)
- {
- String name = get(buffer, "name");
- if(name != null)
- {
- AWindow w = ACanvas.getCanvas().getWindow(name);
- if(w != null)
- {
- if(w.getProjection() != null)
- {
- buffer = replace(buffer, "projection", w.getProjection().getName());
- }
- buffer = replace(buffer, "group", w.getGroupName());
- }
- }
- }
-
- if(buffer.indexOf("<Layout") >= 0)
- {
- String name = get(buffer, "name");
- if(name != null && name.equals(ACanvas.getCanvas().getCurrentLayout().getName()))
- {
- buffer = replace(buffer, "startupWindow", ACanvas.getCanvas().getCurrentWindowName());
- buffer = replace(buffer, "startup", ACanvas.getCanvas().getStartupString());
- }
- }
-
- // new group encountered
- if(buffer.indexOf("<Group") >= 0)
- {
- groupName = get(buffer, "name");
- }
-
- // new parameter encountered
- aParam = null;
- if(buffer.indexOf(" fn=\"") >= 0 &&
- buffer.indexOf("<StatusRoot") < 0 &&
- buffer.indexOf("<StatusGroup") < 0)
- {
- parameterName = removeSpaces(get(buffer, "fn"));
- aParam = parameterStore.getUnknown(groupName, parameterName);
- }
- if(aParam != null)
- {
- // replacing status
- if(buffer.indexOf(" st=\"") >= 0)
- {
- String status = "OFF";
- if(aParam.getStatus())
- {
- status = "ON";
- }
- buffer = replace(buffer, "st", status);
- }
-
- // replacing value
- if(buffer.indexOf(" va=\"") >= 0)
- {
- String value = aParam.getValue();
-
- if(parameterName.equals("Area/Energy"))
- {
- value = "0.0";
- }
- // for instance Track Collections listbox should
- // always remain:
- // sn="Track Collections" va="0" pv="none=0"
- // current 'value' mustn't be put there
- else if(parameterName.endsWith("Collections"))
- {
- value = "0";
- }
- buffer = replace(buffer, "va", value);
-
- }
-
- // replacing operator
- if(buffer.indexOf(" dop=\"") >= 0)
- {
- String dop = aParam.getOperator();
- if(dop.equals("<"))
- {
- dop = "<";
- }
- if(dop.equals("<="))
- {
- dop = "≤";
- }
- if(dop.equals(">"))
- {
- dop = ">";
- }
- if(dop.equals(">="))
- {
- dop = "≥";
- }
- buffer = replace(buffer, "dop", dop);
- }
-
- // replacing scope
- if(buffer.indexOf(" scope=\"") >= 0)
- {
- if(aParam.getScope() == AParameter.GLOBAL)
- {
- buffer = replace(buffer, "scope", "GLOBAL");
- }
- else if(aParam.getScope() == AParameter.LOCAL)
- {
- buffer = replace(buffer, "scope", "LOCAL");
- }
- }
- else if(buffer.indexOf(" fn=\"") > 0)
- {
- // in a parameter - adding scope if needed
- if(aParam.getScope() != parameterStore.getGroup(groupName).getScope())
- {
- int index = buffer.indexOf("/>");
- if(index > 0)
- {
- if(aParam.getScope() == AParameter.GLOBAL)
- {
- buffer.insert(index,
- " scope=\"GLOBAL\"");
- }
- else
- {
- buffer.insert(index,
- " scope=\"LOCAL\"");
- }
- }
- }
- }
- } // aParam != null
- } // !inComment
- output.append(buffer);
- output.append("\n");
- } // while
- curr.close();
- } // try
- catch(IOException ex)
- {
- String m = "I/O error occured when reading the source " +
- "configuration file: " + fileName;
- logger.error(m);
- logger.debug(m, ex);
- output = null;
- }
- catch(AAtlantisException ae)
- {
- //throw ae;
- }
-
-
- return (output != null) ? output.toString() : null;
-
- } // readConfiguration() ------------------------------------------------
-
-
-
- /**
- * Removing spaces from the parameter name
- * @param name String
- * @return String
- */
- private static String removeSpaces(String name)
- {
- StringBuffer strBuffer = new StringBuffer(name);
- int i = 0;
- while(i < strBuffer.length())
- {
- if(Character.isWhitespace(strBuffer.charAt(i)))
- {
- strBuffer.deleteCharAt(i);
- }
- else
- {
- i++;
- }
- }
- return new String(strBuffer);
- } // removeSpaces() -----------------------------------------------------
-
-
- private static StringBuffer replace(StringBuffer s, String variable, String text)
- {
- int name = s.indexOf(variable + "=\"");
- if(name >= 0)
- {
- int start = s.indexOf("\"", name);
- int stop = s.indexOf("\"", start + 1);
- s.delete(start + 1, stop);
- s.insert(start + 1, text);
- }
-
- return s;
- } // replace() ----------------------------------------------------------
-
-
- private static String get(StringBuffer s, String variable)
- {
- // insert a space before the variable name to prevent from the variable
- // name is a substring of another variable name
- int name = s.indexOf(" " + variable + "=\"");
- if(name >= 0)
- {
- int start = s.indexOf("\"", name);
- int stop = s.indexOf("\"", start + 1);
- return s.substring(start + 1, stop);
- }
- return null;
- } // get() --------------------------------------------------------------
-
-} // class AConfigWriter ====================================================
diff --git a/graphics/AtlantisJava/src/atlantis/gui/AControlButton.java b/graphics/AtlantisJava/src/atlantis/gui/AControlButton.java
deleted file mode 100755
index 007cd042757..00000000000
--- a/graphics/AtlantisJava/src/atlantis/gui/AControlButton.java
+++ /dev/null
@@ -1,84 +0,0 @@
-package atlantis.gui;
-
-import java.awt.event.MouseAdapter;
-import java.awt.event.MouseEvent;
-import java.awt.event.ActionEvent;
-import java.awt.event.ActionListener;
-import javax.swing.Timer;
-import javax.swing.JButton;
-
-/**
- * This class is not used at the moment.
- * Was used to control animation.
- */
-public class AControlButton extends JButton {
-
- public static final int STANDARD_ACTION=0;
- public static final int ACCELERATED_ACTION=1;
-
- private ActionListener controlListener;
- private ActionEvent standardAction, acceleratedAction;
- private long ticks;
- private Timer timer;
- private int initialDelay;
- private int tickLength;
- private int accelerationLimit;
- private boolean ignoreClick=false;
-
- public AControlButton(String text, int initialDelay, int tickLength, int accelerationLimit) {
- super(text);
- this.initialDelay=initialDelay;
- this.tickLength=tickLength;
- this.accelerationLimit=accelerationLimit;
- initialize();
- }
-
- private void initialize() {
- standardAction=new ActionEvent(this, 0, "", STANDARD_ACTION);
- acceleratedAction=new ActionEvent(this, 0, "", ACCELERATED_ACTION);
-
- timer=new Timer(tickLength, new ActionListener() {
- public void actionPerformed(ActionEvent e) {
- ticks++;
- fireControlActionPerformed();
- ignoreClick=true;
- }
- });
- timer.setInitialDelay(initialDelay);
-
- addMouseListener(new MouseAdapter() {
- public void mousePressed(MouseEvent e) {
- ticks=0;
- timer.restart();
- }
-
- public void mouseReleased(MouseEvent e) {
- timer.stop();
- }
-
- public void mouseClicked(MouseEvent e) {
- if(ignoreClick)
- ignoreClick=false;
- else
- fireControlActionPerformed();
- }
- });
-
- }
-
- private void fireControlActionPerformed() {
- if(controlListener!=null) {
- if(ticks>accelerationLimit)
- controlListener.actionPerformed(acceleratedAction);
- else
- controlListener.actionPerformed(standardAction);
- }
- }
-
- public void addControlActionListener(ActionListener controlListener) {
- if(this.controlListener!=null)
- throw new Error("AControlButton supports only 1 listener");
- this.controlListener=controlListener;
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/gui/ACrashReporter.java b/graphics/AtlantisJava/src/atlantis/gui/ACrashReporter.java
deleted file mode 100644
index d47949481a8..00000000000
--- a/graphics/AtlantisJava/src/atlantis/gui/ACrashReporter.java
+++ /dev/null
@@ -1,232 +0,0 @@
-// NOTE: revert to previous version once support for Java 1.5 is dropped
-
-package atlantis.gui;
-
-import atlantis.event.AEvent;
-import atlantis.event.AEventManager;
-import atlantis.globals.AGlobals;
-import java.awt.Desktop;
-
-import java.io.File;
-import java.io.FileOutputStream;
-import java.io.OutputStream;
-import java.lang.Thread.UncaughtExceptionHandler;
-import java.net.URI;
-import java.net.URLEncoder;
-import javax.swing.JFileChooser;
-import javax.swing.JOptionPane;
-
-/**
- * This class handles any unhandled exception (program crash). It asks the user for
- * permission to submit a crash report by e-mail and pre-formats the message. It then
- * fires the default system mail client with this message to allow the user to add
- * additional commands and send it.
- *
- * @author Eric Jansen
- */
-public class ACrashReporter implements UncaughtExceptionHandler {
-
- // Dialog asking for permission to report the crash
- private static final String title = "An uncaught exception occured";
- private static final String msg =
- "An uncaught exception occured!\n\n"
- + "Please help us prevent this in the future by reporting this incident.\n"
- + "If you click yes, Atlantis will try to open your mail client and create\n"
- + "a preformatted crash report for you. You can review the information\n"
- + "and add additional comments before it is sent.\n\n"
- + "Do you want to report this crash?";
-
- // Address that receives crash reports, chopped up in case spiders go through this code
- private static final String address = "atlas-atlantis-developers" + "@" + "cern" + "." + "ch";
-
- // Tag for easy filtering, prefix for the mail subject
- private static final String tag = "[crash-report] ";
-
- // System properties included in the report
- private static final String[] properties = {
- "java.version", "java.vendor", "java.vm.specification.version",
- "java.vm.specification.vendor", "java.vm.specification.name", "java.vm.version",
- "java.vm.vendor", "java.vm.name", "java.specification.version", "java.specification.vendor",
- "java.specification.name", "os.name", "os.arch", "os.version"};
-
- /** Flag indicating whether CrashReporter has already been shown */
- private static boolean shownCrashReporter = false;
-
- /**
- * Exception handler for uncaught exceptions in Atlantis. The only way to
- * "handle" such an exception is to tell the developers that they failed.
- * So that is what we will do.
- * @param t thread
- * @param e uncaught exception
- */
- public void uncaughtException(Thread t, Throwable e) {
- // Ensure this only happens once
- if (shownCrashReporter) return;
- shownCrashReporter = true;
-
- int confirm = JOptionPane.showConfirmDialog(null, msg, title,
- JOptionPane.YES_NO_OPTION, JOptionPane.WARNING_MESSAGE, null);
-
- if (confirm == JOptionPane.YES_OPTION) {
- String report = "### Please explain briefly what you did when the problem occured (optional)\n\n";
-
- report += "\n### Exception information\n\n";
- report += getExceptionInformation(e);
-
- report += "\n### General information\n\n";
- report += getGeneralInformation();
-
- report += "\n### Event information\n\n";
- report += getEventInformation();
-
- // If possible, we open the mail client and create a new message
- if (Desktop.isDesktopSupported()) {
- Desktop desktop = Desktop.getDesktop();
-
- if (desktop.isSupported(Desktop.Action.MAIL)) {
- String subject = getSubject(e);
- try {
- URI uri = new URI("mailto:" + address + "?SUBJECT="
- + encode(subject) + "&BODY=" + encode(report));
- desktop.mail(uri);
- } catch (Throwable ex) {
- // Something went wrong, save report to file instead
- saveToFile(report);
- }
- } else {
- // No mail support, save report to file instead
- saveToFile(report);
- }
- } else {
- // No desktop support, save report to file instead
- saveToFile(report);
- }
- }
- }
-
- /**
- * Provides mail encoding of a string (URLEncoding but with %20 for space)
- * @param s string to encode
- * @return encoded string
- */
- private static String encode(String s) {
- try {
- return URLEncoder.encode(s, "utf-8").replaceAll("\\+", "%20");
- } catch (Throwable ex) {
- return s;
- }
- }
-
- /**
- * This provides is the backup option if starting the mail client doesn't
- * work. The report will be saved to a local file and we ask the user to
- * send it.
- * @param report crash report contents
- */
- private void saveToFile(String report) {
- String directory = AGlobals.instance().getHomeDirectory();
- JFileChooser chooser = new JFileChooser(directory);
- chooser.setDialogTitle("Save crash report");
- chooser.setSelectedFile(new File("crash-report.txt"));
-
- // Remind people where this report should go at the top of the file
- report = "### Atlantis crash report, please send to " + address + "\n\n"
- + report;
-
- // Continue asking until the user chooses a valid file or cancels
- while (chooser.showSaveDialog(null) == JFileChooser.APPROVE_OPTION) {
- File file = chooser.getSelectedFile();
- try {
- OutputStream out = new FileOutputStream(file.getAbsolutePath());
- out.write(report.getBytes());
- out.close();
-
- JOptionPane.showMessageDialog(null, "The crash report has been saved successfully.\n"
- + "Please send the file to " + address);
- return;
- } catch (Throwable ex) {
- JOptionPane.showMessageDialog(null, "Cannot write file: " + ex.toString());
- }
- }
- }
-
- /**
- * Takes the exception and finds the most helpful mail subject, in general
- * the exact location of the crash should be helpful when dealing with a
- * lot of reports.
- * @param e uncaught exception
- * @return subject string
- */
- private static String getSubject(Throwable e) {
- StackTraceElement[] st = e.getStackTrace();
- if (st.length > 0) {
- return tag + st[0].toString();
- } else {
- return tag + e.toString();
- }
- }
-
- /**
- * Formats general information about the system, Java and Atlantis
- * @return information string
- */
- private static String getGeneralInformation() {
- StringBuilder s = new StringBuilder();
- s.append("Atlantis version = " + AGlobals.instance().getVersion() + "\n");
-
- for (String property : properties) {
- String value = System.getProperty(property);
- if (value == null) {
- value = "(not set)";
- }
- s.append(property + " = " + value + "\n");
- }
-
- return s.toString();
- }
-
- /**
- * Formats stack trace and exception information
- * @param e unhandled exception
- * @return information string
- */
- private static String getExceptionInformation(Throwable e) {
- StringBuilder s = new StringBuilder();
- String pad = "";
-
- s.append(e.toString() + "\n\n");
-
- StackTraceElement[] st = e.getStackTrace();
- for (StackTraceElement traceline : st) {
- s.append(pad + traceline + "\n");
- pad = " ";
- }
-
- return s.toString();
- }
-
- /**
- * Formats event information, such as source, file, run/event and datatypes
- * @return information string
- */
- private static String getEventInformation() {
- StringBuilder s = new StringBuilder();
- AEventManager eventManager = AEventManager.instance();
- AEvent event = eventManager.getCurrentEvent();
- if (event == null) {
- return "(no current event)";
- }
-
- s.append("Source = " + event.getSourceName() + "\n");
- s.append("Run = " + event.getRunNumber() + "\n");
- s.append("Event = " + event.getEventNumber() + "\n");
-
- s.append("\nData types present:\n");
- String[][] info = event.getInfo();
- for (String[] item : info) {
- s.append(" " + item[0] + " (" + item[1] + ")\n");
- }
-
- return s.toString();
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/gui/ADefaultCellAttribute.java b/graphics/AtlantisJava/src/atlantis/gui/ADefaultCellAttribute.java
deleted file mode 100755
index 1a17ebd0ef9..00000000000
--- a/graphics/AtlantisJava/src/atlantis/gui/ADefaultCellAttribute.java
+++ /dev/null
@@ -1,129 +0,0 @@
-package atlantis.gui;
-
-import java.awt.Dimension;
-
-public class ADefaultCellAttribute
-{
- public static final int ROW = 0;
- public static final int COLUMN = 1;
-
- //
- // !!!! CAUTION !!!!!
- // these values must be synchronized to Table data
- //
- protected int rowSize;
- protected int columnSize;
- protected int[][][] span;
-
- public ADefaultCellAttribute()
- {
- this(1, 1);
- }
-
- public ADefaultCellAttribute(int numRows, int numColumns)
- {
- setSize(new Dimension(numColumns, numRows));
- }
-
- protected void initValue()
- {
- for (int i = 0; i < span.length; i++)
- {
- for (int j = 0; j < span[i].length; j++)
- {
- span[i][j][COLUMN] = 1;
- span[i][j][ROW] = 1;
- }
- }
- }
-
- public int[] getSpan(int row, int column)
- {
- if (isOutOfBounds(row, column))
- {
- int[] ret_code = { 1, 1 };
- return ret_code;
- }
- return span[row][column];
- }
-
- public boolean isVisible(int row, int column)
- {
- if (isOutOfBounds(row, column))
- return false;
- if ((span[row][column][COLUMN] < 1)
- || (span[row][column][ROW] < 1))
- return false;
- return true;
- }
-
- public void combine(int[] rows, int[] columns)
- {
- if (isOutOfBounds(rows, columns))
- return;
- int rowSpan = rows.length;
- int columnSpan = columns.length;
- int startRow = rows[0];
- int startColumn = columns[0];
- for (int i = 0; i < rowSpan; i++)
- {
- for (int j = 0; j < columnSpan; j++)
- {
- if ((span[startRow + i][startColumn + j][COLUMN] != 1)
- || (span[startRow + i][startColumn + j][ROW] != 1))
- {
- return;
- }
- }
- }
- for (int i = 0, ii = 0; i < rowSpan; i++, ii--)
- {
- for (int j = 0, jj = 0; j < columnSpan; j++, jj--)
- {
- span[startRow + i][startColumn + j][COLUMN] = jj;
- span[startRow + i][startColumn + j][ROW] = ii;
- }
- }
- span[startRow][startColumn][COLUMN] = columnSpan;
- span[startRow][startColumn][ROW] = rowSpan;
- }
-
- public Dimension getSize()
- {
- return new Dimension(rowSize, columnSize);
- }
-
- public void setSize(Dimension size)
- {
- columnSize = size.width;
- rowSize = size.height;
- span = new int[rowSize][columnSize][2]; // 2: COLUMN,ROW
- initValue();
- }
-
- protected boolean isOutOfBounds(int row, int column)
- {
- if ((row < 0) || (rowSize <= row) || (column < 0)
- || (columnSize <= column))
- {
- return true;
- }
- return false;
- }
-
- protected boolean isOutOfBounds(int[] rows, int[] columns)
- {
- for (int i = 0; i < rows.length; i++)
- {
- if ((rows[i] < 0) || (rowSize <= rows[i]))
- return true;
- }
- for (int i = 0; i < columns.length; i++)
- {
- if ((columns[i] < 0) || (columnSize <= columns[i]))
- return true;
- }
- return false;
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/gui/ADemoDialog.java b/graphics/AtlantisJava/src/atlantis/gui/ADemoDialog.java
deleted file mode 100755
index be69b6c21e2..00000000000
--- a/graphics/AtlantisJava/src/atlantis/gui/ADemoDialog.java
+++ /dev/null
@@ -1,434 +0,0 @@
-package atlantis.gui;
-
-import java.awt.Color;
-import java.awt.Dimension;
-import java.awt.Frame;
-import java.awt.GridBagConstraints;
-import java.awt.GridBagLayout;
-import java.awt.GridLayout;
-import java.awt.Toolkit;
-import java.awt.Component;
-import java.awt.event.ActionEvent;
-import java.awt.event.ActionListener;
-
-import javax.swing.BorderFactory;
-import javax.swing.JButton;
-import javax.swing.JFrame;
-import javax.swing.JLabel;
-import javax.swing.JOptionPane;
-import javax.swing.JPanel;
-import javax.swing.JSeparator;
-import javax.swing.JSpinner;
-import javax.swing.JTextField;
-import javax.swing.SpinnerNumberModel;
-import javax.swing.SwingConstants;
-import javax.swing.WindowConstants;
-import javax.swing.border.Border;
-
-import java.util.Arrays;
-import java.util.Vector;
-
-import atlantis.globals.AGlobals;
-import atlantis.graphics.AIcon;
-import atlantis.projection.AProjectionsManager;
-import atlantis.parameters.ACommandProcessor;
-import atlantis.utils.ALogger;
-
-
-
-
-
-/**
- * A Dialog in which user can set parameters for demo mode, as well as start and
- * stop the demo mode. This class holds and controls the demo loop thread.
- * This is a singleton, but there is no point why it needs to be.
- *
- * @author Sebastian Boeser (with traces from Qiang Lu)
- */
-public class ADemoDialog extends JFrame implements ActionListener
-{
- //Get a logger
- private final static ALogger logger = ALogger.getLogger(ADemoDialog.class);
-
- //Some GUI elements
- private JSpinner timerSpinner;
- private SpinnerNumberModel timerSpinnerModel;
- private static final Integer TIMER_MIN = new Integer(1);
- private static final Integer TIMER_MAX = new Integer(120);
- private static final Integer TIMER_INIT = new Integer(3);
-
- //The text label showing the projection sequence
- private JTextField sequenceTextField = null;
- //And the panel housing these
- private JPanel projControlPanel=null;
-
- //The action buttons
- private JButton startButton = null;
- private JButton stopButton = null;
- private JButton closeButton = null;
-
-
- //The thread that is runing the loop
- private ADemoLoop demo = null;
-
- private static final AGlobals globals = AGlobals.instance();
-
- //The singleton instance
- private static ADemoDialog instance = null;
-
- /**
- * Public access-instantiation accessor
- * @return the singleton instance
- */
- public static ADemoDialog getInstance(){
- //Create instance if needed
- if (instance == null) instance = new ADemoDialog();
- //and return it
- return instance;
- }
-
- /**
- * Private Constructor
- */
- private ADemoDialog() {
- super("Demo");
- createGUI();
- pack();
- }
-
- // initialize the GUI
- private void createGUI()
- {
- JPanel timerControlPanel = createTimeControlPanel();
- projControlPanel = createProjControlPanel();
- JPanel buttonControlPanel = createButtonControlPanel();
-
- JPanel contentPane = new JPanel(new GridBagLayout());
- contentPane.setOpaque(true);
- GridBagConstraints c = new GridBagConstraints();
- c.weightx = 1;
- c.weighty = 1;
- c.gridwidth = GridBagConstraints.REMAINDER;
- c.fill=GridBagConstraints.HORIZONTAL;
- c.anchor = GridBagConstraints.CENTER;
- contentPane.add(timerControlPanel, c);
- contentPane.add(projControlPanel, c);
- contentPane.add(buttonControlPanel, c);
- this.setResizable(false);
- this.setContentPane(contentPane);
- this.setDefaultCloseOperation(WindowConstants.DISPOSE_ON_CLOSE);
- this.setAlwaysOnTop(true);
-
- // set the initial location
- Frame gui = globals.getGuiFrame();
- int guiWidth = gui.getWidth();
- int guiHeight = gui.getHeight();
- int guiX = gui.getX();
- int dialogWidth = (int) this.getPreferredSize().getWidth();
- int dialogHeight = (int) this.getPreferredSize().getHeight();
- int screenWidth = Math.round((float) Toolkit.getDefaultToolkit().getScreenSize().getWidth());
- if(guiX + guiWidth + (dialogWidth - guiWidth) / 2 > screenWidth)
- this.setLocation(Math.max(0, screenWidth - dialogWidth),
- Math.max(0, (guiHeight - dialogHeight) / 3));
- else
- this.setLocation(Math.max(0, guiX + (guiWidth - dialogWidth) / 2),
- Math.max(0, (guiHeight - dialogHeight) / 3));
- AIcon.setIconImage(this);
- }
-
- private JPanel createTimeControlPanel()
- {
-
- JPanel aPanel = new JPanel(new GridBagLayout());
- GridBagConstraints c = new GridBagConstraints();
- aPanel.setOpaque(true);
- //aPanel.setPreferredSize(new Dimension(FRAME_WIDTH, PANEL_HEIGHT));
- aPanel.setBorder(BorderFactory.createEmptyBorder(5,5,5,5));
-
- //Add timer label
- JLabel timerLabel= new JLabel("Interval");
- c.gridwidth = 1;
- c.fill = GridBagConstraints.HORIZONTAL;
- c.weightx=1;
- c.gridx=0;
- aPanel.add(timerLabel,c);
- //Add timer spinner
- timerSpinner = new JSpinner();
- timerSpinner.setEnabled(true);
- timerSpinnerModel = new SpinnerNumberModel(TIMER_INIT, TIMER_MIN,
- TIMER_MAX, new Integer(1));
- timerSpinner.setModel(timerSpinnerModel);
- c.gridwidth = 1;
- c.weightx=1;
- c.fill = GridBagConstraints.HORIZONTAL;
- c.gridx=1;
- aPanel.add(timerSpinner,c);
- //Add units label
- c.weightx = 0.5;
- c.gridwidth = GridBagConstraints.REMAINDER;
- c.gridx=2;
- aPanel.add(new JLabel(" sec"),c);
-
-
- //Add the labels for th selected projections
- c.gridx=GridBagConstraints.RELATIVE;
- c.weightx=1;
- c.gridwidth=1;
- aPanel.add(new JLabel("Sequence:"), c);
-
- //Now generate the sequence label and make it span the remaining columns
- sequenceTextField = new JTextField();
- c.gridwidth=GridBagConstraints.REMAINDER;
- c.fill=GridBagConstraints.HORIZONTAL;
- aPanel.add(sequenceTextField,c);
-
- return aPanel;
- }
-
- private JPanel createProjControlPanel()
- {
-
- JPanel aPanel = new JPanel(new GridLayout(3,4));
- aPanel.setOpaque(true);
- Border outerBorder = BorderFactory.createEmptyBorder(5, 5, 5, 5);
- Border innerBorder = BorderFactory.createTitledBorder(BorderFactory.createLineBorder(Color.GRAY),
- "Add Projection / Action");
- aPanel.setBorder(BorderFactory.createCompoundBorder(outerBorder, innerBorder));
-
- //Create the list of check boxes
- for (String projName : AProjectionsManager.getKnownProjectionNames()){
-
- //Check wether this projection name should be used in the demo dialog
- if (AProjectionsManager.useProjectionInDemoMode(projName)){
-
- //Create the respective button with the screen name of the projection
- String projScreenName = AProjectionsManager.getProjection(projName).getScreenName();
- JButton projButton = new JButton(projScreenName);
- //Store the name of the projection as the name of the JCheckBox
- //Where we can retrieve it once the demo dialog is started
- projButton.setName(projName);
- projButton.setFocusPainted(false);
-
- //Add ourselves as action listener of this button
- projButton.addActionListener(this);
- aPanel.add(projButton);
- }
- }
- //Also add a "next event" button
- JButton nextEvtBut = new JButton("Next event");
- nextEvtBut.setName("NE");
- nextEvtBut.addActionListener(this);
- aPanel.add(nextEvtBut);
-
- return aPanel;
- }
-
- private JPanel createButtonControlPanel()
- {
- //final int PANEL_HEIGHT = 40;
- Dimension buttonDimension = new Dimension(100,25);
-
- JPanel aPanel = new JPanel(new GridBagLayout());
- aPanel.setOpaque(true);
- //aPanel.setPreferredSize(new Dimension(FRAME_WIDTH, PANEL_HEIGHT));
- aPanel.setBorder(BorderFactory.createEmptyBorder(5,5,10,5));
-
- GridBagConstraints c = new GridBagConstraints();
- startButton = new JButton("Start");
- //startButton.setFocusPainted(false);
- startButton.setEnabled(true);
- startButton.setPreferredSize(buttonDimension);
- startButton.addActionListener(this);
- c.weightx = 1;
- c.weighty = 1;
- c.anchor = GridBagConstraints.CENTER;
- aPanel.add(startButton, c);
- stopButton = new JButton("Stop");
- stopButton.setFocusPainted(false);
- stopButton.setEnabled(false);
- stopButton.setPreferredSize(buttonDimension);
- stopButton.addActionListener(this);
- aPanel.add(stopButton, c);
- JSeparator aSeparator = new JSeparator(SwingConstants.VERTICAL);
- //aSeparator.setPreferredSize(new Dimension(5, PANEL_HEIGHT));
- aPanel.add(aSeparator, c);
- closeButton = new JButton("Close");
- closeButton.setFocusPainted(false);
- closeButton.setEnabled(true);
- closeButton.setPreferredSize(buttonDimension);
- closeButton.addActionListener(this);
- c.gridwidth = GridBagConstraints.REMAINDER;
- aPanel.add(closeButton, c);
-
- return aPanel;
- }
-
- /**
- * @return true if demo thread is running, otherwise false
- */
- boolean isRunning(){
- //no thread -> false
- if (demo == null) return false;
- //otherwise use thread status
- return demo.isRunning();
- }
-
-
- // return interval in millisecond
- int getTimerInterval()
- {
- return 1000 * timerSpinnerModel.getNumber().intValue();
- }
-
- public void setTimerInterval(Integer intervalInSec)
- {
- try {
- timerSpinnerModel.setValue(intervalInSec);
- } catch (IllegalArgumentException iae){
- //Just ignore in case of illegal argument
- }
- }
-
-
- /**
- * Set the sequence of projections
- * @param projNames colon seperated list of projection names
- */
- public void setSequence(String projNames){
- //store this in our text entry
- sequenceTextField.setText(projNames);
- }
-
- /**
- * Set the default sequence
- */
- public void setDefaultSequence(){
- //Create default sequence
- StringBuilder sequence = new StringBuilder();
- //Add all default projections
- for (String projName : AProjectionsManager.getKnownProjectionNames()){
- if (AProjectionsManager.defaultProjectionInDemoMode(projName))
- sequence.append(projName+":");
- }
- //End sequence with next event
- sequence.append("NE");
- //And set this in the text field
- sequenceTextField.setText(sequence.toString());
- }
-
- /**
- * @return a vector with the names of the projections
- */
- private Vector<String> getSequence()
- {
- return new Vector<String>(Arrays.asList(sequenceTextField.getText().split(":")));
- }
-
- /**
- * Validate whether the given sequence is valid
- * @return the number of selected projections
- */
- private boolean validateSequence()
- {
- //Get the projections sequence
- Vector<String> sequence = getSequence();
-
- //Check on number of projections
- if(sequence.size() < 1){
- JOptionPane.showMessageDialog(this,
- "No projection/event is selected, please select at least select one",
- "Warning", JOptionPane.WARNING_MESSAGE);
- return false;
- }
-
- //Now check each item of the sequence for validity
- for (String projName : sequence){
- //The "new event" action is an exception here
- if (projName.equals("NE")) continue;
- //check wether this is a known and allowed projection
- if ((! Arrays.asList(AProjectionsManager.getKnownProjectionNames()).contains(projName)) ||
- (! AProjectionsManager.useProjectionInDemoMode(projName)))
- {
- JOptionPane.showMessageDialog(this,
- "Not a valid projection name: '"+projName+"'",
- "Warning", JOptionPane.WARNING_MESSAGE);
- return false;
- }
-
- }
-
- //Seems all okay
- return true;
- }
-
-
-
- /**
- * Start the demo thread
- */
- public void startDemo()
- {
-
- //First make sure some projections have been selected
- if (!validateSequence()) return;
-
- //Set single full window mode
- ACommandProcessor.receive("WW");
-
- //Start the demo, setting "stopOnNoMoreEvents" to false
- //TODO: make stopOnNoMoreEvents a checkbox in the Dialog
- demo = new ADemoLoop(getTimerInterval(),getSequence(),false);
- demo.startDemoLoop();
- //Now disable all GUI elements
- timerSpinner.setEnabled(false);
- sequenceTextField.setEnabled(false);
- for (Component comp: projControlPanel.getComponents()) comp.setEnabled(false);
- startButton.setEnabled(false);
- stopButton.setEnabled(true);
- closeButton.setEnabled(false);
- //Do not allowe the user to close the window, so he doesn't loose access
- this.setDefaultCloseOperation(WindowConstants.DO_NOTHING_ON_CLOSE);
- }
-
- /**
- * Stop the demo thread
- */
- synchronized void stopDemo()
- {
- //exit the demo
- demo.stopDemoLoop();
- //Now reenable all GUI elements
- timerSpinner.setEnabled(true);
- sequenceTextField.setEnabled(true);
- for (Component comp: projControlPanel.getComponents()) comp.setEnabled(true);
- stopButton.setEnabled(false);
- startButton.setEnabled(true);
- closeButton.setEnabled(true);
-
- this.setDefaultCloseOperation(WindowConstants.DISPOSE_ON_CLOSE);
- }
-
- /**
- * Implementation of the Action listener
- * - gets called for every button that is pressed
- * @param e the action event
- */
- public void actionPerformed(ActionEvent e) {
- //Check for action buttons first
- if (e.getSource() == startButton ) startDemo();
- else if (e.getSource() == stopButton) stopDemo();
- else if (e.getSource() == closeButton ) dispose();
- //this should be one of the projection buttons
- else {
- //get the projectio name to append
- String projName = ((JButton)e.getSource()).getName();
- //get the existing sequence
- String sequence = sequenceTextField.getText();
- //append new projection
- sequence += ((sequence.length()!=0) ? ":" : "") + projName;
- //Set this as new sequence
- sequenceTextField.setText(sequence);
- }
-
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/gui/ADemoFileChooser.java b/graphics/AtlantisJava/src/atlantis/gui/ADemoFileChooser.java
deleted file mode 100755
index c9768ef7aab..00000000000
--- a/graphics/AtlantisJava/src/atlantis/gui/ADemoFileChooser.java
+++ /dev/null
@@ -1,41 +0,0 @@
-package atlantis.gui;
-
-import java.awt.Component;
-import java.io.File;
-
-import atlantis.config.ADefaultValues;
-
-/**
-* A dialog which appears when a user asks to read a new event.
-*
-* @author Qiang Lu
-*/
-public class ADemoFileChooser extends AXMLFileChooser
-{
- private File fileSelected;
-
- public ADemoFileChooser(String path, Component parent)
- {
- super(path, parent);
- }
-
- public boolean processSelectedFile(File file)
- {
- if (file.canRead())
- {
- // save last visited location
- ADefaultValues.set("LastEventFilesSourceDir", file.getParent() +
- System.getProperty("file.separator"));
-
- fileSelected = file;
- return true;
- }
- return false;
- }
-
- public File getFileSelected()
- {
- return fileSelected;
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/gui/ADemoLoop.java b/graphics/AtlantisJava/src/atlantis/gui/ADemoLoop.java
deleted file mode 100755
index 85f387a9708..00000000000
--- a/graphics/AtlantisJava/src/atlantis/gui/ADemoLoop.java
+++ /dev/null
@@ -1,200 +0,0 @@
-package atlantis.gui;
-
-import java.awt.Frame;
-import java.awt.event.ActionEvent;
-import java.util.ArrayList;
-
-import atlantis.canvas.ACanvas;
-import atlantis.event.AEventManager;
-import atlantis.event.AEventSource.InvalidEventSourceException;
-import atlantis.event.AEventSource.NoMoreEventsException;
-import atlantis.event.AEventSource.ReadEventException;
-import atlantis.globals.AGlobals;
-import atlantis.projection.AProjection;
-import atlantis.projection.AProjection2D;
-import atlantis.projection.AProjectionsManager;
-import atlantis.parameters.ACommandProcessor;
-import atlantis.utils.ALogger;
-import java.awt.event.ActionListener;
-import java.util.Iterator;
-import java.util.Vector;
-import javax.swing.JOptionPane;
-
-import javax.swing.Timer;
-
-/**
- * A class to automatically loop over different projections given in a
- * colon-seperated list. The special projection name "NE" stands for next event.
- * This is also used in headless mode to generate an event loop. The stopOnNoMoreEvents
- * allows to control wether the loop ends if no more events can be obtained.
- *
- * NOTE: The previous implementation of this was using java.awt.Thread - we are
- * far from providing the standards of a thread-safe application.
- *
- * @author Sebastian Boeser
- */
-public class ADemoLoop extends Timer implements ActionListener
-{
- //The logger
- private static ALogger logger = ALogger.getLogger(ADemoLoop.class);
-
- //whether to stop the loop if there are no more events
- private boolean stopOnNoMoreEvents = false;
-
- //A list of projections to show
- private final ArrayList<String> projectionList = new ArrayList<String>();
-
- //An iterator that loops through the list above
- private Iterator<String> projIter = null;
-
- private static final AGlobals globals = AGlobals.instance();
-
- /**
- * Fully specified Constructor
- * @param sleepTime time to sleep inbetween projections in milliseconds
- * @param projectionList list of projections to loop through
- * @param stopOnNoMoreEvents wether to stop loop if there are no more events
- */
- public ADemoLoop(int sleepTime, Vector<String> projectionList, boolean stopOnNoMoreEvents){
-
- //Initialize the timer
- super(sleepTime,null);
- addActionListener(this);
-
- //Initialize the timer to start immediately only on first event
- setInitialDelay(0);
-
- //Store the list of projections
- for (String projName : projectionList)
- this.projectionList.add(projName);
-
- //Set the stop on no more events flag
- this.stopOnNoMoreEvents = stopOnNoMoreEvents;
-
- }
-
-
- /***
- * prepare the demo loop and start the timer thread
- */
- public void startDemoLoop(){
- AGlobals.instance().setDemoMode(true);
-
- //be verbose
- logger.trace("Starting demo loop with interval "+Integer.toString(getDelay())+
- " ms and projections "+projectionList.toString());
-
- //Generate the list iterator to point to the start of the list
- projIter = projectionList.listIterator(0);
-
- //Finally start the loop
- start();
- }
-
- /**
- * stop the demo loop
- */
- public void stopDemoLoop(){
- stop();
- globals.setDemoMode(true);
- }
-
- /**
- * This gets fired by the timer every time after it returns from sleep
- * @param event the action event
- */
- public void actionPerformed(ActionEvent event) {
-
- //If we have reached the end, start from beginning
- if (! projIter.hasNext()) projIter = projectionList.listIterator(0);
-
- //proceed to next element in list
- String projName = projIter.next();
-
- //add debugging output
- logger.trace("Next in demo loop: "+projName);
-
- //Check if this is a next event tag
- if (projName.equals("NE")) {
- //Change the event or stop loop if this did not succeed
- if (!changeEvent()) {
- //stop the loop
- stop();
- //notify everyone that we are done (so the application can finish)
- synchronized(this) { notifyAll(); }
- }
-
- //Immediatly go to the next projection if this is not just a nextEvent again
- Iterator<String> nextProjIter = projIter;
- if (nextProjIter.hasNext() && (!nextProjIter.next().equals("NE"))) restart();
- //be verbose
- logger.trace("Timer is"+(isRunning()?" running":" stopped")+" with "+getDelay()+" ms delay");
- }
- //else just change the projection
- else changeProjection(projName);
-
- }
-
-
- /**
- * Change the current projection to the one given by projName
- * and select that as active projeciton in the GUI
- * @param projName the name of the projection
- */
- private void changeProjection(String projName)
- {
- //First get the projection object
- AProjection p = AProjectionsManager.getProjection(projName);
- //And set the projection
- ACanvas.getCanvas().getCurrentWindow().setProjection(p);
- //Make sure aspect ratio is always okay
- if(projName.equals("YX")||projName.equals("RZ")||projName.equals("XZ")||projName.equals("YZ"))
- ((AProjection2D) p).setAspectRatio1(ACanvas.getCanvas().getCurrentWindow());
- //Finally Change the current GUI selection by signaling the command processor
- ACommandProcessor.receive(projName + ".");
- }
-
- /**
- * Switch to the next event
- * @return if the return value is true, the loop will be continued, otherwise not
- */
- private boolean changeEvent(){
- Frame gui = globals.getGuiFrame();
- //try reading the next event
- try{
- //Then get next event
- AEventManager eventManager = AEventManager.instance();
- eventManager.nextEvent();
- return true;
- } catch (NoMoreEventsException ex) {
- //Just wait for next event
- logger.info("No next event for demo - "+((stopOnNoMoreEvents)?"stopping loop":"keeping same"));
- //return wether loop shall be stopped due to this or not.
- return (!stopOnNoMoreEvents);
- } catch (InvalidEventSourceException ex) {
- //log warning
- logger.warn("Invalid event source for demo - "
- +((stopOnNoMoreEvents)?"stopping loop":"will try again")
- +"\n"+ex.getCauseMessages());
- //quit here in headless mode
- if (AGlobals.isAtlantisHeadless()) return (!stopOnNoMoreEvents);
- //Otherwise give a user warning
- JOptionPane.showMessageDialog(gui,
- "Invalid event source for demo - stopping loop",
- "Warning", JOptionPane.WARNING_MESSAGE);
- //Always quit the loop if not in headless mode
- return false;
- } catch (ReadEventException ex) {
- //log warning
- logger.warn("Received invalid event - stopping loop:\n"+ex.getCauseMessages());
- //and tell user unless we are in headless
- if (AGlobals.isAtlantisHeadless()) return false;
- //in headless mode, don't show a dialog
- JOptionPane.showMessageDialog(gui,
- "Received invalid event for demo - stopping loop",
- "Warning", JOptionPane.WARNING_MESSAGE);
- return false;
- }
- }
-}
-
diff --git a/graphics/AtlantisJava/src/atlantis/gui/AEventLoopDialog.java b/graphics/AtlantisJava/src/atlantis/gui/AEventLoopDialog.java
deleted file mode 100755
index 152bc9f5c2c..00000000000
--- a/graphics/AtlantisJava/src/atlantis/gui/AEventLoopDialog.java
+++ /dev/null
@@ -1,346 +0,0 @@
-package atlantis.gui;
-
-import java.util.Date;
-
-import java.awt.Color;
-import java.awt.Frame;
-import java.awt.event.WindowListener;
-import java.awt.event.WindowEvent;
-import java.awt.event.ActionListener;
-import java.awt.event.ActionEvent;
-import java.awt.BorderLayout;
-import java.awt.Dimension;
-
-import java.text.SimpleDateFormat;
-
-import javax.swing.event.ChangeEvent;
-import javax.swing.event.ChangeListener;
-import javax.swing.border.Border;
-import javax.swing.BorderFactory;
-import javax.swing.JButton;
-import javax.swing.JFrame;
-import javax.swing.JLabel;
-import javax.swing.JPanel;
-import javax.swing.JSpinner;
-import javax.swing.SpinnerNumberModel;
-import javax.swing.Timer;
-
-import atlantis.event.AEventManager;
-import atlantis.event.AEventSource.NoMoreEventsException;
-import atlantis.event.AEventSource.InvalidEventSourceException;
-import atlantis.event.AEventSource.ReadEventException;
-import atlantis.globals.AGlobals;
-import atlantis.graphics.AIcon;
-import atlantis.output.ALogInterface;
-import atlantis.utils.ALogger;
-
-
-/**
- * Read events in a loop using a given timer intervall
- * This is a singleton class using the getInstance pattern.
- *
- * @author Sebastian Boeser
- */
-public class AEventLoopDialog extends JFrame
- implements WindowListener, ActionListener, ChangeListener
-{
- // the logger
- private static ALogger logger = ALogger.getLogger(AEventLoopDialog.class);
-
- private static final AGlobals globals = AGlobals.instance();
-
- //create singleton instance
- private static AEventLoopDialog instance;
-
- // some GUI attributes
- private static final String TITLE = "Event loop";
- private static final Integer SPINNER_INIT = new Integer(4);
- private static final Integer SPINNER_MIN = new Integer(1);
- private static final Integer SPINNER_MAX = new Integer(120);
- private static final Integer SPINNER_STEP = new Integer(2);
-
- // We don't need more than one button
- private static JButton button = null;
-
- //The update time in seconds
- private static JSpinner updateIntervalSpinner = null;
- //A logging pane
- private static ALogPane log = null;
-
- // The update timer
- private static final Timer timer = new Timer(SPINNER_INIT*1000,null);
-
-
- private AEventLoopDialog()
- {
- //Create dialog with title
- super(TITLE);
-
- //Construct GUI
- createGUI();
-
- } // AReadEventFromServerDialog() ---------------------------------------
-
- /**
- * @return the singleton instance
- */
- public static AEventLoopDialog getInstance(){
- if (instance == null) instance = new AEventLoopDialog();
- return instance;
- } // getInstance() ------------------------------------------------------
-
-
- /**
- * Non-static set functions so user is forced to obtain an instance first
- * @param UpdateInterval the update intervall
- */
- public void setUpdateInterval(int UpdateInterval) {
- try {
- updateIntervalSpinner.setValue(UpdateInterval);
- } catch (IllegalArgumentException iae){
- //Just ignore in case of an invalid argument
- }
- }
-
- /**
- * Design of the dialog - panels, buttons, etc
- */
- private void createGUI() {
-
- //Definde default component gap
- final int defaultGap = 5;
- final Border defaultBorder = BorderFactory.createEmptyBorder(5, 10, 5, 10);
-
- /**
- * Looping panel
- */
- //Create a spinner for the update time
- SpinnerNumberModel numberModel = new SpinnerNumberModel(SPINNER_INIT, SPINNER_MIN, SPINNER_MAX, SPINNER_STEP);
- updateIntervalSpinner = new JSpinner(numberModel);
- updateIntervalSpinner.addChangeListener(this);
-
- // looping panel
- JPanel loopingPanel = new JPanel();
- loopingPanel.setLayout(new BorderLayout(defaultGap, 0));
- loopingPanel.setBorder(defaultBorder);
- loopingPanel.add(updateIntervalSpinner, BorderLayout.CENTER);
- loopingPanel.add(new JLabel("[secs]"), BorderLayout.EAST);
-
-
- /**
- * Main action buttons
- */
- // action button panel
- JPanel buttonsPanel = new JPanel();
- buttonsPanel.setLayout(new BorderLayout(0, 0));
- buttonsPanel.setBorder(defaultBorder);
- button = new JButton("Start");
- //Set a preferred size so it doesn't change if we change its label
- button.setPreferredSize(new Dimension(100,25));
- buttonsPanel.add(button, BorderLayout.CENTER);
- //React when button is pressed
- button.addActionListener(this);
-
- //the top row panel
- JPanel topRowPanel = new JPanel();
- topRowPanel.setLayout(new BorderLayout(defaultGap, 0));
- topRowPanel.add(loopingPanel, BorderLayout.CENTER);
- topRowPanel.add(buttonsPanel, BorderLayout.EAST);
-
-
-
- /**
- * Logging panel
- */
- // the logging panel at the bottom
- JPanel logPanel = new JPanel();
- logPanel.setLayout(new BorderLayout(0, 0));
- logPanel.setBorder(defaultBorder);
- //Add a logpane to it
- log = new ALogPane();
- log.setEnabled(true);
- log.setBorder(BorderFactory.createLineBorder(Color.black));
- log.setRequestFocusEnabled(false);
- log.setPreferredSize(new Dimension(350, 200));
- logPanel.add(log, BorderLayout.CENTER);
-
-
- // main panel
- JPanel mainPanel = new JPanel();
- mainPanel.setLayout(new BorderLayout(0, 0));
- // logPanel must be CENTER to be resisable vertically (otherwise,
- // it keeps its size), hence upper part must be extra panel for
- // NORTH position to accommodate topRowPanel and loopingPanel
- JPanel upperMainPanel = new JPanel();
- upperMainPanel.setLayout(new BorderLayout(0, 0));
- upperMainPanel.add(topRowPanel, BorderLayout.NORTH);
- mainPanel.add(upperMainPanel, BorderLayout.NORTH);
- mainPanel.add(logPanel, BorderLayout.CENTER);
-
- // Finally add this MainPanel
- getContentPane().add(mainPanel, BorderLayout.CENTER);
-
- //arrange all GUI items
- pack();
-
- //Set location to top left GUI corner so it does not hide Canvas
- setLocation(globals.getGuiFrame().getLocation());
-
- //give it a nice icon when minimized
- AIcon.setIconImage(this);
-
-
- /**
- * end of dialog design, set listeners and handlers
- */ //add ourselfs as state listeners to catch closing
- addWindowListener(this);
-
- //also set ourselfs as action handler for the timer
- timer.addActionListener(this);
- //And have the timer start immediately on the first event
- timer.setInitialDelay(0);
-
-
-
- } // createGUI() --------------------------------------------------------
-
- /**
- * State change events are only generated by the updateIntervalSpinner
- * @param e the Change event
- */
- public void stateChanged(ChangeEvent e) {
- //Set timer delay to new value
- timer.setDelay((Integer)updateIntervalSpinner.getValue()*1000);
- }
-
- /**
- * Stop event loop when closing the window
- * @param e the Window event
- */
- public void windowClosing(WindowEvent e){
-
- //Make sure the timer is not running anymore
- if (timer.isRunning()) stopEventLoop();
-
- } // closeActionsAndDispose() ------------------------------------------
-
- /**
- * Small helper to print a message with timestamp to the log
- * @param msg the message
- */
- private void timeStampedLog(String msg){
-
- //Record the time of the incident
- SimpleDateFormat dateForm = new SimpleDateFormat("yyyy-MM-dd HH:mm:ss");
- log.append("\n"+dateForm.format(new Date())+" ",ALogInterface.NORMAL_BOLD);
- log.append(msg);
- }
-
-
- /**
- * Try to read the next event from the server, handle all exceptions
- */
- private void getNextEvent() {
-
- //try reading the next event
- try{
- //tell the user
- timeStampedLog("Reading next event...");
- //Then get next event
- AEventManager.instance().nextEvent();
- } catch (NoMoreEventsException ex) {
- //Just wait for next event
- log.append("\n -- No next event available");
- logger.info("No next event available:\n"+ex.getCauseMessages());
- } catch (InvalidEventSourceException ex) {
- //Do not break loop on invalid event source -- good for ACR
- log.append("\n -- Invalid event source");
- logger.warn("Invalid event source:\n"+ex.getCauseMessages());
- } catch (ReadEventException ex) {
- //Don't break loop on invalid events
- log.append("\n -- Received invalid event");
- logger.warn("Received invalid event:\n"+ex.getCauseMessages());
- }
- }
-
- /**
- * Stop the event loop, reenabling all GUI elements
- */
- private void stopEventLoop(){
-
- //Stop the timer loop
- timer.stop();
-
- //Reset button label and states
- button.setText("Start");
- updateIntervalSpinner.setEnabled(true);
-
- //tell the user
- timeStampedLog("Stopped event loop...");
- }
-
- /**
- * Start the event loop, disable all GUI elements - is public to facilitate
- * automated start of event loop (e.g with command-line options)
- */
- public void startEventLoop(){
-
- //tell the user
- timeStampedLog("Starting event loop...");
-
- //enable/disable buttons
- updateIntervalSpinner.setEnabled(false);
- button.setText("Stop");
-
- //Stop the timer loop
- timer.start();
-
- }
-
- /**
- * Called every time the button is hit or we get a callback from the timer
- * @param e the action event
- */
- public void actionPerformed(ActionEvent e) {
-
- //Check if we got called from the timer loop
- if (e.getSource() == timer){
- //If so just read next event and return
- getNextEvent();
- return;
- }
-
- //Being called because button was hit.
- //Check if event loop is running - stop it
- if (timer.isRunning()) {
- stopEventLoop();
- } else {
- startEventLoop();
- }
- }
-
-
- /**
- * Show the dialog
- */
- public void showDialog() {
-
- // clear the iconified bit (no matter whether or not it is iconified)
- setExtendedState(getExtendedState() & ~Frame.ICONIFIED);
- setVisible(true);
-
- } // show() ----------------------------------------------------
-
-
- /**
- * Empty default implementation of WindowListeners
- * @param e
- */
- public void windowOpened(WindowEvent e) {}
- public void windowClosed(WindowEvent e) {}
- public void windowIconified(WindowEvent e) {}
- public void windowDeiconified(WindowEvent e) {}
- public void windowActivated(WindowEvent e) {}
- public void windowDeactivated(WindowEvent e) {}
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/gui/AEventPropertiesDialog.java b/graphics/AtlantisJava/src/atlantis/gui/AEventPropertiesDialog.java
deleted file mode 100755
index 8b7a7a33278..00000000000
--- a/graphics/AtlantisJava/src/atlantis/gui/AEventPropertiesDialog.java
+++ /dev/null
@@ -1,721 +0,0 @@
-package atlantis.gui;
-
-import java.awt.BorderLayout;
-import java.awt.Font;
-import java.awt.Frame;
-import java.awt.Toolkit;
-import java.awt.event.ActionEvent;
-import java.awt.event.ActionListener;
-import java.io.IOException;
-import java.io.InputStream;
-import java.io.StringReader;
-import java.util.List;
-import java.util.Vector;
-
-import javax.swing.JButton;
-import javax.swing.JFrame;
-import javax.swing.JOptionPane;
-import javax.swing.JPanel;
-import javax.swing.JTabbedPane;
-import javax.swing.JTable;
-import javax.swing.JScrollPane;
-
-import com.Ostermiller.util.CSVParser;
-
-import atlantis.data.ACalorimeterData;
-import atlantis.event.AEvent;
-import atlantis.event.AEventManager;
-import atlantis.data.ALVL1ResultData;
-import atlantis.event.ANewEventListener;
-import atlantis.globals.AGlobals;
-import atlantis.graphics.AIcon;
-import atlantis.graphics.layout.AFlowLayout;
-import atlantis.data.ATriggerInfoData;
-import atlantis.utils.AAtlantisException;
-import atlantis.utils.ALogger;
-import atlantis.utils.AUtilities;
-
-/**
- * The dialog which is used to display the current event properties.
- */
-public class AEventPropertiesDialog extends JFrame implements ANewEventListener
-{
- private static ALogger logger = ALogger.getLogger(AEventPropertiesDialog.class);
- private static AEventManager eventManager = AEventManager.instance();
-
- private JTable table, propertiesTable, level1Table, level2Table,
- eventFilterTable, trigInfoItemsTable, trigInfoStreamTable,
- userSelectedTable, mbtsTable;
- private JPanel buttonsPanel;
- private JTabbedPane tabbedPane;
- private JButton okButton;
- private JButton refreshButton;
- private static AEventPropertiesDialog instance = null;
- protected static String[] USER_ITEMS = null;
- private static final String LOOKUP_FILENAME = "epusti.csv";
- private static final AGlobals globals = AGlobals.instance();
- private static final String LOOKUP_FILE =
- globals.getHomeDirectory() + "configuration" +
- System.getProperty("file.separator") +
- LOOKUP_FILENAME;
-
- public static boolean isInUse()
- {
- if(instance ==null || !instance.isVisible())
- return false;
- else
- return true;
- }
-
- public static AEventPropertiesDialog getInstance()
- {
- if (instance == null)
- instance = new AEventPropertiesDialog();
- return instance;
- }
-
- public AEventPropertiesDialog()
- {
- Frame gui = globals.getGuiFrame();
- eventManager.addNewEventListener(this);
- this.setTitle("Event Properties Dialog");
- AIcon.setIconImage(this);
- // setResizable(false);
-
- // From Java 1.5 we can tell the window to be always on top
- this.setAlwaysOnTop(true);
-
- // check whether there is any event data are present
- if (eventManager.getCurrentEvent() == null)
- {
- JOptionPane.showMessageDialog(gui,
- "Current event is null\n" + "(no event data currently present)",
- "Event null", JOptionPane.WARNING_MESSAGE);
- return;
- }
-
- try
- {
- readFromLookupFile();
- }
- catch(AAtlantisException ex)
- {
- logger.warn(": reading " + LOOKUP_FILE +
- " failed, user trigger items will not " +
- "be available, reason: " + ex.getMessage(), ex);
- }
-
- fillTabbedPane(0);
- addButtonPane();
- setDefaultCloseOperation(DISPOSE_ON_CLOSE);
- pack();
-
- // set the initial location
- int guiWidth = gui.getWidth();
- int guiHeight = gui.getHeight();
- int guiX = gui.getX();
- int dialogWidth = (int) this.getPreferredSize().getWidth();
- int dialogHeight = (int) this.getPreferredSize().getHeight();
- int screenWidth = Math.round((float) Toolkit.getDefaultToolkit()
- .getScreenSize().getWidth());
- if (guiX + guiWidth + (dialogWidth - guiWidth) / 2 > screenWidth)
- this.setLocation(Math.max(0, screenWidth - dialogWidth), Math.max(
- 0, (guiHeight - dialogHeight) / 3));
- else
- this.setLocation(Math.max(0, guiX + (guiWidth - dialogWidth) / 2),
- Math.max(0, (guiHeight - dialogHeight) / 3));
-
- setVisible(true);
- }
-
- private void readFromLookupFile() throws AAtlantisException
- {
- if(USER_ITEMS==null)
- {
- try
- {
- InputStream is = AUtilities.getFileAsStream(LOOKUP_FILE);
- CSVParser parser = new CSVParser(is);
- parser.setCommentStart("#");
- String valueArray = parser.nextValue(); // shall now contain all values
- CSVParser parserArray = new CSVParser(new StringReader(valueArray));
- String[][] s = parserArray.getAllValues();
- if(s!=null)
- {
- USER_ITEMS = s[0];
- }
- }
- catch (IOException e)
- {
- throw new AAtlantisException("exception while reading file: " +
- LOOKUP_FILE);
- }
- catch (AAtlantisException e)
- {
- throw e;
- }
- }
- }
-
-
- public void dispose()
- {
- instance = null;
- super.dispose();
- }
-
- public void updatePane()
- {
-
- JTabbedPane currentTabbedPane = (JTabbedPane) getContentPane().getComponent(0);
- int currentIndex = currentTabbedPane.getSelectedIndex();
- getContentPane().removeAll();
- validate();
-
- fillTabbedPane(currentIndex);
- addButtonPane();
-
- pack();
- }
-
- private void addButtonPane()
- {
- okButton = new JButton("OK");
- okButton.addActionListener(new ActionListener() {
- public void actionPerformed(ActionEvent e)
- {
- dispose();
- }
- });
-
- // Add button to refresh data after cuts have been applied
- refreshButton = new JButton("Refresh Cuts");
- refreshButton.setToolTipText("Display data passing cuts for active window");
- refreshButton.addActionListener(new ActionListener() {
- public void actionPerformed(ActionEvent e)
- {
- updatePane();
- }
- });
-
- buttonsPanel = new JPanel(new AFlowLayout(10, 5));
- buttonsPanel.add(okButton);
- buttonsPanel.add(refreshButton);
- getContentPane().add(buttonsPanel, BorderLayout.SOUTH);
-
-
-
- }
-
- /** fills the tabbed pane with the event information
- * @param index the currently selected index
- */
- private void fillTabbedPane(int index)
- {
- fillTablePane();
- AEvent event = eventManager.getCurrentEvent();
-
- //now need to loop over the lvl1result collections
- Vector<String> keys = event.getCollections().get("LVL1Result");
- ALVL1ResultData lvl1ResultData[]=null;
- if(keys!=null){
- lvl1ResultData = new ALVL1ResultData[keys.size()];
- for(int i=0; i<keys.size();i++)
- {
- String colLvl1= "LVL1Result" + (String)keys.elementAt(i);
- lvl1ResultData[i] = (ALVL1ResultData) event.get(colLvl1);
- }
- }
-
- ATriggerInfoData triggerInfoData = event.getTriggerInfoData();
- fillPropertiesPane(lvl1ResultData, triggerInfoData);
- String[][] L1_items = fillLevel1Pane(lvl1ResultData);
- String[][] L2_items = fillLevel2Pane(lvl1ResultData);
- String[][] EF_items = fillEventFilterPane(lvl1ResultData);
- fillTrigInfoItemsPane(triggerInfoData);
- fillTrigInfoStreamPane(triggerInfoData);
- fillUserSelectedPane(L1_items, L2_items, EF_items);
- fillmbtsPane();
-
- tabbedPane = new JTabbedPane();
- tabbedPane.addTab("Number of Hits", new JScrollPane(table));
- tabbedPane.addTab("Properties", new JScrollPane(propertiesTable));
- tabbedPane.addTab("Level 1 Trigger Items", new JScrollPane(level1Table));
- tabbedPane.addTab("Level 2 Trigger Items", new JScrollPane(level2Table));
- tabbedPane.addTab("Event Filter Trigger Items", new JScrollPane(eventFilterTable));
- tabbedPane.addTab("Trigger Info Items", new JScrollPane(trigInfoItemsTable));
- tabbedPane.addTab("Trigger Info Stream Tag", new JScrollPane(trigInfoStreamTable));
- tabbedPane.addTab("User Selected Trigger Items", new JScrollPane(userSelectedTable));
- tabbedPane.addTab("All MBTS cell details", new JScrollPane(mbtsTable));
- tabbedPane.setSelectedIndex(index);
-
- getContentPane().setLayout(new BorderLayout());
- getContentPane().add(tabbedPane, BorderLayout.CENTER);
- }
-
- private void fillTablePane()
- {
- // For total data and data passing cuts, use .getInfoDraw()
- // for total event data, use getInfo()
- table = new JTable(eventManager.getCurrentEvent().getInfoDraw(),
- new String[] { "detector / datatype", "data items", "passing cuts" }) {
- public boolean isCellEditable(int row, int column) { return false; }
- };
- table.setRowHeight(20);
- table.setFont(new Font("Monospaced", Font.PLAIN, 16));
- table.getColumnModel().getColumn(0).setPreferredWidth(350);
- table.getColumnModel().getColumn(1).setPreferredWidth(100);
- table.getColumnModel().getColumn(2).setPreferredWidth(100);
- }
-
- private void fillPropertiesPane(ALVL1ResultData lvl1ResultData[], ATriggerInfoData triggerInfoData)
- {
- double et = 0;
- List<ACalorimeterData> calo = eventManager.getCurrentEvent().getCalorimeters();
-
- for (int i = 0; i < calo.size(); i++)
- et += calo.get(i).getTotalTransverseEnergy();
-
- String[][] properties;
-
- if (lvl1ResultData == null)
- {
- if(triggerInfoData==null)
- {
- properties = new String[2][2];
- properties[1][0] = "Trigger Decision";
- properties[1][1] = "N/A";
- }
- else
- {
- properties = new String[7][2];
- properties[1][0] = "Trigger Decision";
- properties[1][1] = "N/A";
- properties[2][0] = "Trigger Info: Level 1 EtMiss";
- properties[2][1] = String.valueOf(triggerInfoData.getEnergyEtMiss(0));
- properties[3][0] = "Trigger Info: Level 1 SumEt";
- properties[3][1] = String.valueOf(triggerInfoData.getEnergyEtMiss(0));
- properties[4][0] = "Trigger Info: ExtL1ID";
- properties[4][1] = triggerInfoData.getTrigInfoExtL1ID(0);
- properties[5][0] = "Trigger Info: Lvl1Type";
- properties[5][1] = triggerInfoData.getTrigInfoLvl1Type(0);
- properties[6][0] = "Trigger Info: Status";
- properties[6][1] = triggerInfoData.getTrigInfoStatus(0);
-
- }
- }
- else
- {
- properties = new String[5*lvl1ResultData.length+6][2];
-
- //output the trigger info:
- properties[1][0] = "Trigger Info: Level 1 EtMiss";
- properties[2][0] = "Trigger Info: Level 1 SumEt";
- properties[3][0] = "Trigger Info: ExtL1ID";
- properties[4][0] = "Trigger Info: Lvl1Type";
- properties[5][0] = "Trigger Info: Status";
-
- if(triggerInfoData!=null)
- {
- properties[1][1] = String.valueOf(triggerInfoData.getEnergyEtMiss(0));
- properties[2][1] = String.valueOf(triggerInfoData.getEnergySumEt(0));
- properties[3][1] = triggerInfoData.getTrigInfoExtL1ID(0);
- properties[4][1] = triggerInfoData.getTrigInfoLvl1Type(0);
- properties[5][1] = triggerInfoData.getTrigInfoStatus(0);
- }else{
- properties[1][1] = "N/A";
- properties[2][1] = "N/A";
- properties[3][1] = "N/A";
- properties[4][1] = "N/A";
- properties[5][1] = "N/A";
- }
-
- for(int j=0; j<lvl1ResultData.length;j++){
- int ref=j*5;//reference to allow >1 collection in the list
- String name=lvl1ResultData[j].getStoreGateKey();
-
- properties[6+ref][0] = name + ": Level 1 result";
- properties[7+ref][0] = name + ": Level 2 result";
- properties[8+ref][0] = name + ": Event Filter result";
- properties[9+ref][0] = name + ": Level 1 EtMiss";
- properties[10+ref][0] = name + ": Level 1 SumEt";
-
- int[] temp=new int[3];
- temp[0]=lvl1ResultData[j].getPassedL1(0);
- temp[1]=lvl1ResultData[j].getPassedL2(0);
- temp[2]=lvl1ResultData[j].getPassedEF(0);
- for(int i=0;i<3;i++)
- {
- switch(temp[i])
- {
- case -1:
- properties[i+6+ref][1]="N/C";
- break;
- case 0:
- properties[i+6+ref][1]="failed";
- break;
- case 1:
- properties[i+6+ref][1]="passed";
- break;
- default:
- properties[i+6+ref][1]="N/A";
- }
- }
- float LVL1EtMiss=lvl1ResultData[j].getEnergyEtMiss(0);
- float LVL1SumEt=lvl1ResultData[j].getEnergySumEt(0);
- if(LVL1EtMiss>0)
- properties[9+ref][1] = String.valueOf(LVL1EtMiss);
- else
- properties[9+ref][1] = "N/A";
- if(LVL1SumEt>0)
- properties[10+ref][1] = String.valueOf(LVL1SumEt);
- else
- properties[10+ref][1] = "N/A";
- }
- }
-
- //first item always Transv. Energy
- properties[0][0] = "Transv. Energy (GeV)";
- properties[0][1] = String.format("%.2f",et);
-
- propertiesTable = new JTable(properties, new String[] { "Name", "Value" }) {
- public boolean isCellEditable(int row, int column) { return false; }
- };
- propertiesTable.setRowHeight(20);
- propertiesTable.setFont(new Font("Monospaced", Font.PLAIN, 16));
- propertiesTable.getColumnModel().getColumn(0).setPreferredWidth(350);
- propertiesTable.getColumnModel().getColumn(1).setPreferredWidth(100);
- }
-
- private String[][] fillLevel1Pane(ALVL1ResultData lvl1ResultData[])
- {
- String[][] properties;
-
- if (lvl1ResultData == null)
- {
- properties = new String[1][2];
- properties[0][0] = "N/A";
- properties[0][1] = "N/A";
- }
- else
- {
- String[][] items=new String[lvl1ResultData.length][];
- String[][] prescales=new String[lvl1ResultData.length][];
- int numItems=0;
- for(int j=0; j<lvl1ResultData.length;j++){
- items[j]=lvl1ResultData[j].getCtpItemListSplit(0,false);
- prescales[j]=lvl1ResultData[j].getPrescaleListL1Split(0);
- numItems+=items[j].length;
- }
- properties = new String[numItems][2];
- numItems=0;
- for(int j=0; j<lvl1ResultData.length;j++){
- String name=lvl1ResultData[j].getStoreGateKey();
- for(int i=0; i<items[j].length; i++)
- {
- properties[numItems][0]= name + ": " + items[j][i];
- properties[numItems][1]=(prescales[j] != null && i<prescales[j].length) ? prescales[j][i]: "N/A";
- numItems++;
- }
- }
- }
- level1Table = new JTable(properties, new String[] { "Item passed", "Prescale"}) {
- public boolean isCellEditable(int row, int column) { return false; }
- };
- level1Table.setRowHeight(20);
- level1Table.setFont(new Font("Monospaced", Font.PLAIN, 16));
- level1Table.getColumnModel().getColumn(0).setPreferredWidth(350);
- level1Table.getColumnModel().getColumn(1).setPreferredWidth(100);
-
- return properties;
- }
-
- private String[][] fillLevel2Pane(ALVL1ResultData lvl1ResultData[])
- {
- String[][] properties;
-
- if (lvl1ResultData == null)
- {
- properties = new String[1][2];
- properties[0][0] = "N/A";
- properties[0][1] = "N/A";
- }
- else
- {
- String[][] items=new String[lvl1ResultData.length][];
- String[][] prescales=new String[lvl1ResultData.length][];
- int numItems=0;
- for(int j=0; j<lvl1ResultData.length;j++){
- items[j]=lvl1ResultData[j].getitemListL2Split(0,false);
- prescales[j]=lvl1ResultData[j].getPrescaleListL2Split(0);
- numItems+=items[j].length;
- }
- properties = new String[numItems][2];
- numItems=0;
- for(int j=0; j<lvl1ResultData.length;j++){
- String name=lvl1ResultData[j].getStoreGateKey();
- for(int i=0; i<items[j].length; i++)
- {
- properties[numItems][0]= name + ": " + items[j][i];
- properties[numItems][1]=(prescales[j] != null && i<prescales[j].length) ? prescales[j][i]: "N/A";
- numItems++;
- }
- }
- }
- level2Table = new JTable(properties, new String[] { "Item passed", "Prescale" }) {
- public boolean isCellEditable(int row, int column) { return false; }
- };
- level2Table.setRowHeight(20);
- level2Table.setFont(new Font("Monospaced", Font.PLAIN, 16));
- level2Table.getColumnModel().getColumn(0).setPreferredWidth(350);
- level2Table.getColumnModel().getColumn(1).setPreferredWidth(100);
-
- return properties;
- }
-
- private String[][] fillEventFilterPane(ALVL1ResultData lvl1ResultData[])
- {
- String[][] properties;
-
- if (lvl1ResultData == null)
- {
- properties = new String[1][2];
- properties[0][0] = "N/A";
- properties[0][1] = "N/A";
- }
- else
- {
- String[][] items=new String[lvl1ResultData.length][];
- String[][] prescales=new String[lvl1ResultData.length][];
- int numItems=0;
- for(int j=0; j<lvl1ResultData.length;j++){
- items[j]=lvl1ResultData[j].getitemListEFSplit(0,false);
- prescales[j]=lvl1ResultData[j].getPrescaleListEFSplit(0);
- numItems+=items[j].length;
- }
- properties = new String[numItems][2];
- numItems=0;
- for(int j=0; j<lvl1ResultData.length;j++){
- String name=lvl1ResultData[j].getStoreGateKey();
- for(int i=0; i<items[j].length; i++)
- {
- properties[numItems][0]= name + ": " + items[j][i];
- properties[numItems][1]=(prescales[j] != null && i<prescales[j].length) ? prescales[j][i]: "N/A";
- numItems++;
- }
- }
- }
- eventFilterTable = new JTable(properties, new String[] { "Item passed", "Prescale" }) {
- public boolean isCellEditable(int row, int column) { return false; }
- };
- eventFilterTable.setDefaultEditor(String.class, null);
- eventFilterTable.setRowHeight(20);
- eventFilterTable.setFont(new Font("Monospaced", Font.PLAIN, 16));
- eventFilterTable.getColumnModel().getColumn(0).setPreferredWidth(350);
- eventFilterTable.getColumnModel().getColumn(1).setPreferredWidth(100);
-
- return properties;
- }
-
- private void fillTrigInfoItemsPane(ATriggerInfoData triggerInfoData)
- {
- String[][] properties;
-
- if (triggerInfoData == null)
- {
- properties = new String[1][3];
- properties[0][0] = "N/A";
- properties[0][1] = "N/A";
- properties[0][2] = "N/A";
- }
- else
- {
- String[] itemsL1=triggerInfoData.getTrigInfoL1SplitHex(0);
- String[] itemsL2=triggerInfoData.getTrigInfoL2SplitHex(0);
- String[] itemsEF=triggerInfoData.getTrigInfoEFSplitHex(0);
- //find list with largest amount of items
- int items = Math.max(Math.max(itemsL1.length, itemsL2.length),itemsEF.length);
- properties = new String[items][3];
- for(int i=0; i<items; i++)
- {
- properties[i][0]= (i<itemsL1.length) ? itemsL1[i] : "";
- properties[i][1]= (i<itemsL2.length) ? itemsL2[i] : "";
- properties[i][2]= (i<itemsEF.length) ? itemsEF[i] : "";
- }
- }
- trigInfoItemsTable = new JTable(properties, new String[] { "L1", "L2", "EF" }) {
- public boolean isCellEditable(int row, int column) { return false; }
- };
- trigInfoItemsTable.setRowHeight(20);
- trigInfoItemsTable.setFont(new Font("Monospaced", Font.PLAIN, 16));
- trigInfoItemsTable.getColumnModel().getColumn(0).setPreferredWidth(100);
- trigInfoItemsTable.getColumnModel().getColumn(1).setPreferredWidth(100);
- trigInfoItemsTable.getColumnModel().getColumn(1).setPreferredWidth(100);
-
- }
-
- private void fillTrigInfoStreamPane(ATriggerInfoData triggerInfoData)
- {
- String[][] properties;
-
- if (triggerInfoData == null)
- {
- properties = new String[1][1];
- properties[0][0] = "N/A";
- }
- else
- {
- String[] items=triggerInfoData.getTrigInfoStreamTagSplit(0);
- properties = new String[items.length][1];
- for(int i=0; i<items.length; i++)
- {
- properties[i][0]=items[i];
- }
- }
- trigInfoStreamTable = new JTable(properties, new String[] { "Stream Tag"}) {
- public boolean isCellEditable(int row, int column) { return false; }
- };
- trigInfoStreamTable.setRowHeight(20);
- trigInfoStreamTable.setFont(new Font("Monospaced", Font.PLAIN, 16));
- trigInfoStreamTable.getColumnModel().getColumn(0).setPreferredWidth(450);
- }
-
- private void fillUserSelectedPane(String[][] L1_items, String[][] L2_items, String[][] EF_items)
- {
- String[][] properties;
- if (USER_ITEMS==null)
- {
- properties = new String[1][2];
- properties[0][0] = "Please add items to: " + LOOKUP_FILENAME;
- properties[0][1] = "N/A";
- }
- else
- {
- Vector<String> v_c1 = new Vector<String>();//column 1 - item
- Vector<String> v_c2 = new Vector<String>();//column 2 - prescales
- Vector<String> v_u = new Vector<String>();//user items
- for(int i=0; i<USER_ITEMS.length; i++)
- {
- v_u.add(USER_ITEMS[i]);
- }
- //loop over L1 items
- for(int j=0; j<L1_items.length; j++)
- {
- for(int i=0; i<v_u.size(); i++)
- {
- if(v_u.elementAt(i).equals(L1_items[j][0]))
- {
- v_c1.add(L1_items[j][0]);
- v_c2.add(L1_items[j][1]);
- v_u.remove(i);
- }
- }
- }
- //if still have user items left loop over L2
- if(v_u.size()>0)
- {
- for(int j=0; j<L2_items.length; j++)
- {
- for(int i=0; i<v_u.size(); i++)
- {
- if(v_u.elementAt(i).equals(L2_items[j][0]))
- {
- v_c1.add(L2_items[j][0]);
- v_c2.add(L2_items[j][1]);
- v_u.remove(i);
- }
- }
- }
- }
- //if still have user items left loop over EF
- if(v_u.size()>0)
- {
- for(int j=0; j<EF_items.length; j++)
- {
- for(int i=0; i<v_u.size(); i++)
- {
- if(v_u.elementAt(i).equals(EF_items[j][0]))
- {
- v_c1.add(EF_items[j][0]);
- v_c2.add(EF_items[j][1]);
- v_u.remove(i);
- }
- }
- }
- }
- //now store items in String[][]
- properties = new String[v_c1.size()][2];
- for(int i=0; i<v_c1.size(); i++)
- {
- properties[i][0]=v_c1.elementAt(i).toString();
- properties[i][1]=v_c2.elementAt(i).toString();
- }
- }
- userSelectedTable = new JTable(properties, new String[] { "Item passed", "Prescale" }) {
- public boolean isCellEditable(int row, int column) { return false; }
- };
- userSelectedTable.setRowHeight(20);
- userSelectedTable.setFont(new Font("Monospaced", Font.PLAIN, 16));
- userSelectedTable.getColumnModel().getColumn(0).setPreferredWidth(350);
- userSelectedTable.getColumnModel().getColumn(1).setPreferredWidth(100);
- }
-
- private void fillmbtsPane()
- {
- ACalorimeterData calorimeter=null;
- List<ACalorimeterData> detectors = eventManager.getCurrentEvent().getCalorimeters();
- for (int det = 0; det < detectors.size(); det++)
- {
- ACalorimeterData testcalorimeter = detectors.get(det);
- if (!testcalorimeter.getName().equals("MBTS")) continue;
- if(testcalorimeter.getNumData()>0) calorimeter=testcalorimeter;
- }
-
-
- String[][] properties;
- if (calorimeter==null)
- {
- properties = new String[1][5];
- properties[0][0] = "N/A";
- properties[0][1] = "N/A";
- properties[0][2] = "N/A";
- properties[0][3] = "N/A";
- properties[0][4] = "N/A";
- }
- else
- {
- properties = new String[calorimeter.getNumData()][5];
- //AMBTSData mbtsdata = calorimeter.eta[i];
- for (int i = 0; i < calorimeter.getNumData(); ++i)
- {
- properties[i][0] = "" + i;
- properties[i][1] = "" + String.format("%.3f",(calorimeter.getET(i)));
- properties[i][2] = "" + String.format("%.1f",calorimeter.getEta(i));
- properties[i][3] = "" + String.format("%.1f",calorimeter.getPhi(i));
- properties[i][4] = "" + calorimeter.getSampling(i);
- }
- }
- mbtsTable = new JTable(properties, new String[] { "Index", "Energy (MeV)", "Type", "Module", "Channel" }) {
- public boolean isCellEditable(int row, int column) { return false; }
- };
- mbtsTable.setRowHeight(20);
- mbtsTable.setFont(new Font("Monospaced", Font.PLAIN, 16));
- mbtsTable.getColumnModel().getColumn(0).setPreferredWidth(90);
- mbtsTable.getColumnModel().getColumn(1).setPreferredWidth(90);
- mbtsTable.getColumnModel().getColumn(2).setPreferredWidth(90);
- mbtsTable.getColumnModel().getColumn(3).setPreferredWidth(90);
- mbtsTable.getColumnModel().getColumn(4).setPreferredWidth(90);
- }
-
- /**
- * Implementing NewEvent listener
- * @param event the new event
- */
- public void newEvent(AEvent event) {
- if (isInUse()) updatePane();
- }
-
-
-
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/gui/AEventQueue.java b/graphics/AtlantisJava/src/atlantis/gui/AEventQueue.java
deleted file mode 100755
index 081e214dd29..00000000000
--- a/graphics/AtlantisJava/src/atlantis/gui/AEventQueue.java
+++ /dev/null
@@ -1,165 +0,0 @@
-package atlantis.gui;
-
-import java.awt.EventQueue;
-import java.awt.AWTEvent;
-import java.awt.Frame;
-import java.awt.event.KeyEvent;
-import atlantis.parameters.APar;
-import atlantis.canvas.ACanvas;
-import atlantis.data.AG4StepData;
-import atlantis.event.AEventManager;
-import atlantis.event.AEventSource.InvalidEventSourceException;
-import atlantis.event.AEventSource.NoMoreEventsException;
-import atlantis.event.AEventSource.ReadEventException;
-import atlantis.globals.AGlobals;
-import atlantis.interactions.AModifier;
-import javax.swing.JOptionPane;
-import atlantis.utils.ALogger;
-
-/**
- * Because we use Mouse Actions and Keyboard Modifiers (letters) we need a way of
- * getting all the keyboard events independent of the focussed compenent. This is
- * done by catching them directly from the Event Queue. So, we just replace the
- * default Java Queue by this one.
- */
-public class AEventQueue extends EventQueue {
-
- /**
- * Contains the code of the key (is some key is pressed)
- * or KeyEvent.VK_UNDEFINED if no key is holded down.
- */
- private static int keyboardState;
- private static AModifier defInt = new AModifier(KeyEvent.VK_UNDEFINED, false, "");
-
- private KeyEvent keyEvent;
-
- private final static ALogger logger = ALogger.getLogger(AEventQueue.class);
- private static AEventManager eventManager = AEventManager.instance();
-
- private static boolean isRightMouseButton;
-
- protected static APar parameterStore = APar.instance();
-
- private static final AGlobals globals = AGlobals.instance();
-
- public static int getKeyboardState() {
- int ret = 0;
-
- if (keyboardState == KeyEvent.VK_UNDEFINED) {
- ret = defInt.getKeyCode();
- } else {
- ret = keyboardState;
- }
-
- // Bit of a hack because fastzoom is handled differently from other
- // interactions
- if (ret == KeyEvent.VK_F) {
- parameterStore.get("Projection", "SkipData").setStatus(true);
- } else {
- parameterStore.get("Projection", "SkipData").setStatus(false);
- }
-
- return ret;
- }
-
- public static AModifier getDefault() {
- return defInt;
- }
-
- public static void setDefault(AModifier mod) {
- defInt = mod;
-
- }
-
- public static int getKeyboardDefault() {
- return defInt.getKeyCode();
- }
-
- public static boolean getIntRightMouseButton() {
- if (keyboardState == KeyEvent.VK_UNDEFINED) {
- // Non-default action selected, use the right click option from it
- return defInt.getRightClick() || isRightMouseButton;
- } else {
- return isRightMouseButton;
- }
- }
-
- // FIXME: isRightMouseButton sometimes has spurious true value: see Trac #488
- protected void dispatchEvent(AWTEvent event) {
- Frame gui = globals.getGuiFrame();
- super.dispatchEvent(event);
-
- if(event instanceof KeyEvent) {
- keyEvent=(KeyEvent)event;
-// this is the right mouse click on single mouse button mac's
- switch(keyEvent.getID()) {
- case KeyEvent.KEY_PRESSED:
- if(keyEvent.getKeyCode()==17) {
- isRightMouseButton=true;
- return;
- }
- keyboardState=keyEvent.getKeyCode();
- //atlantis.utils.AOutput.append(" key pressed :" + keyboardState + ":\n", atlantis.utils.ALogPane.NORMAL_BOLD);
-
- if (keyEvent.getKeyCode()==33){//page up
- System.out.println("Go to previous event");
- try {
- eventManager.previousEvent();
- } catch (NoMoreEventsException nme) {
- String msg = "Already at first event from this source!";
- JOptionPane.showMessageDialog(gui, msg, "No more events", JOptionPane.ERROR_MESSAGE);
- logger.warn(nme.getCauseMessages());
- } catch (InvalidEventSourceException ies) {
- String msg = "Not a valid event source - please select one!";
- JOptionPane.showMessageDialog(gui, msg, "Invalid source", JOptionPane.ERROR_MESSAGE);
- logger.warn(ies.getCauseMessages());
- } catch (ReadEventException ree) {
- String msg = "Can not read event(s)!";
- JOptionPane.showMessageDialog(gui, msg, "Read error", JOptionPane.ERROR_MESSAGE);
- logger.warn(ree.getCauseMessages());
- }
- }
- if (keyEvent.getKeyCode()==34) {//page down
- System.out.println("Go to next event");
- try {
- eventManager.nextEvent();
- } catch (NoMoreEventsException nme) {
- String msg = "Already at last event from this source!";
- JOptionPane.showMessageDialog(gui, msg, "No more events", JOptionPane.ERROR_MESSAGE);
- logger.warn(nme.getCauseMessages());
- } catch (InvalidEventSourceException ies) {
- String msg = "Not a valid event source - please select one!";
- JOptionPane.showMessageDialog(gui, msg, "Invalid source", JOptionPane.ERROR_MESSAGE);
- logger.warn(ies.getCauseMessages());
- } catch (ReadEventException ree) {
- String msg = "Can not read event(s)!";
- JOptionPane.showMessageDialog(gui, msg, "Read error", JOptionPane.ERROR_MESSAGE);
- logger.warn(ree.getCauseMessages());
- }
- }
-
- if (keyEvent.getKeyCode()==47) {// "/"
- AG4StepData.ReadG4Steps();
- }//key "/"
-
- if (keyEvent.getKeyCode() == KeyEvent.VK_F) {
- parameterStore.get("Projection", "SkipData").setStatus(true);
- }
- break;
-
- case KeyEvent.KEY_RELEASED:
- if (keyEvent.getKeyCode() == 17) {
- isRightMouseButton = false;
- return;
- }
- keyboardState = KeyEvent.VK_UNDEFINED;
- if (keyEvent.getKeyCode() == KeyEvent.VK_F) {
- parameterStore.get("Projection", "SkipData").setStatus(false);
- ACanvas.getCanvas().getCurrentWindow().repaintFromScratch();
- }
- break;
- }
- }
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/gui/AEventSourceToolBar.java b/graphics/AtlantisJava/src/atlantis/gui/AEventSourceToolBar.java
deleted file mode 100644
index 8f5534a6dd5..00000000000
--- a/graphics/AtlantisJava/src/atlantis/gui/AEventSourceToolBar.java
+++ /dev/null
@@ -1,523 +0,0 @@
-
-package atlantis.gui;
-
-import atlantis.config.ADefaultValues;
-import atlantis.event.AEvent;
-import atlantis.event.AEventManager;
-import atlantis.event.AEventSource;
-import atlantis.event.ANewEventSourceListener;
-import atlantis.event.AURLEventSource;
-import atlantis.event.AEventSource.InvalidEventSourceException;
-import atlantis.event.AEventSource.NavigationMode;
-import atlantis.event.AEventSource.NoMoreEventsException;
-import atlantis.event.AEventSource.ReadEventException;
-import atlantis.event.AStreamedEventSource;
-import atlantis.event.AStreamedEventSource.InvalidStreamException;
-import atlantis.globals.AGlobals;
-import atlantis.utils.ALogger;
-import atlantis.utils.AUtilities;
-import java.awt.Insets;
-import java.awt.event.ActionEvent;
-import java.awt.event.ActionListener;
-import java.util.Vector;
-import javax.swing.Box;
-import javax.swing.ButtonGroup;
-import javax.swing.DefaultComboBoxModel;
-import javax.swing.ImageIcon;
-import javax.swing.JButton;
-import javax.swing.JComboBox;
-import javax.swing.JFileChooser;
-import javax.swing.JOptionPane;
-import javax.swing.JRadioButton;
-import javax.swing.JTextField;
-import javax.swing.JToolBar;
-import javax.swing.event.PopupMenuEvent;
-import javax.swing.event.PopupMenuListener;
-
-/**
- * This toolbar contains all the elements to set a new event source or stream,
- * browse through the events or set the event navigation mode
- * @author maillard
- * @author sboeser
- */
-class AEventSourceToolBar extends JToolBar implements ANewEventSourceListener {
-
- /** The text field that allows us to enter a new event source */
- private JTextField addressBar;
-
- /** The event stream selection combo box */
- private JComboBox eventStreamComboBox;
-
- /** The radio buttons that allow to select the event navigation mode */
- private JRadioButton randomButton, sequentialButton, loopButton;
-
- /** The logger */
- private final static ALogger logger = ALogger.getLogger(AEventSourceToolBar.class);
-
- private static AEventManager eventManager = AEventManager.instance();
-
- /** Spacing between components in the toolbar */
- private static int SPACE = 4;
-
- /**
- * Constructor
- */
- public AEventSourceToolBar() {
-
- //call parent constructor
- super();
-
- setFloatable(false);
-
- //Get the path to the icon files
- String iconPath = AGlobals.instance().getHomeDirectory()+"img"+System.getProperty("file.separator");
-
- // setting up the 'open file' button
- ImageIcon openIcon = AUtilities.getFileAsImageIcon(iconPath+"toolbar_open.png");
- JButton openFile = new JButton(openIcon);
- openFile.setVerticalTextPosition(JButton.BOTTOM);
- openFile.setHorizontalTextPosition(JButton.CENTER);
- openFile.setMargin(new Insets(2, 2, 2, 2));
- openFile.setToolTipText("Open local file");
- // And add an action listener for it
- openFile.addActionListener(new ActionListener() {
- public void actionPerformed(ActionEvent e) {
- openFileButtonAction();
- }
- });
- // adding the open file button to the toolbar
-
- add(Box.createHorizontalStrut(SPACE));
- add(openFile);
- add(Box.createHorizontalStrut(SPACE));
-
- // setting up the address bar
- addressBar = new JTextField(30);
- // and an action listener
- addressBar.addActionListener( new ActionListener() {
- public void actionPerformed(ActionEvent e) {
- addressBarAction((JTextField)e.getSource());
- }
- });
- // adding the address bar to the toolbar
- add(addressBar);
-
- //Set up previous and next buttons
- ImageIcon nextIcon = AUtilities.getFileAsImageIcon(iconPath+"toolbar_next.png");
- ImageIcon previousIcon = AUtilities.getFileAsImageIcon(iconPath+"toolbar_previous.png");
-
- JButton nextButton = new JButton(nextIcon);
- JButton previousButton = new JButton(previousIcon);
-
- //customize and add action listener for next
- nextButton.setName("nextButton");
- nextButton.setVerticalTextPosition(JButton.BOTTOM);
- nextButton.setHorizontalTextPosition(JButton.CENTER);
- nextButton.setMargin(new Insets(2, 2, 2, 2));
- nextButton.setToolTipText("Next event (PageDown)");
- nextButton.addActionListener(new ActionListener(){
- public void actionPerformed(ActionEvent e){
- nextButtonAction();
- }
- });
-
- //customize and add action listener for previous
- previousButton.setName("previousButton");
- previousButton.setVerticalTextPosition(JButton.BOTTOM);
- previousButton.setHorizontalTextPosition(JButton.CENTER);
- previousButton.setMargin(new Insets(2, 2, 2, 2));
- previousButton.setToolTipText("Previous event (PageUp)");
- previousButton.addActionListener(new ActionListener(){
- public void actionPerformed(ActionEvent e){
- previousButtonAction();
- }
- });
- //Add both to toolbar
- add(Box.createHorizontalStrut(SPACE));
- add(previousButton);
- add(nextButton);
- add(Box.createHorizontalStrut(SPACE));
-
- //Next add a seperator
- addSeparator();
-
- //Add a combo box, but set it to invisble
- String[] streamNames = { "--n/a--" };
- eventStreamComboBox = new JComboBox(streamNames);
- eventStreamComboBox.setVisible(false);
- add(eventStreamComboBox);
-
- // set up the navigation mode button icons
- ImageIcon sequentialIcon = AUtilities.getFileAsImageIcon(iconPath+"mode_sequential.png");
- ImageIcon loopIcon = AUtilities.getFileAsImageIcon(iconPath+"mode_loop.png");
- ImageIcon randomIcon = AUtilities.getFileAsImageIcon(iconPath+"mode_random.png");
- ImageIcon sequentialIconOn = AUtilities.getFileAsImageIcon(iconPath+"mode_sequential_on.png");
- ImageIcon loopIconOn = AUtilities.getFileAsImageIcon(iconPath+"mode_loop_on.png");
- ImageIcon randomIconOn = AUtilities.getFileAsImageIcon(iconPath+"mode_random_on.png");
-
- //put these buttons in a group
- ButtonGroup group = new ButtonGroup();
- // sequential mode
- sequentialButton = new JRadioButton(sequentialIcon);
- sequentialButton.setOpaque(false);
- sequentialButton.setSelectedIcon(sequentialIconOn);
- sequentialButton.setToolTipText("Sequential mode");
- sequentialButton.setName("Sequential mode");
- // loop mode
- loopButton = new JRadioButton(loopIcon);
- loopButton.setSelectedIcon(loopIconOn);
- loopButton.setOpaque(false);
- loopButton.setToolTipText("Loop mode");
- loopButton.setName("Loop mode");
- // random mode
- randomButton = new JRadioButton(randomIcon);
- randomButton.setOpaque(false);
- randomButton.setSelectedIcon(randomIconOn);
- randomButton.setToolTipText("Random mode");
- randomButton.setName("Random mode");
- // the mode buttons are initially disabled, since we
- // don't know which event source will be loaded first
- sequentialButton.setEnabled(false);
- loopButton.setEnabled(false);
- randomButton.setEnabled(false);
-
- // when one of the buttons is pressed, set the required display mode
- sequentialButton.addActionListener(new ActionListener() {
- public void actionPerformed(ActionEvent e) {
- navigationModeAction(NavigationMode.SEQUENTIAL);
- }
- });
-
- loopButton.addActionListener(new ActionListener() {
- public void actionPerformed(ActionEvent e) {
- navigationModeAction(NavigationMode.LOOP);
- }
- });
-
- randomButton.addActionListener(new ActionListener() {
- public void actionPerformed(ActionEvent e) {
- navigationModeAction(NavigationMode.RANDOM);
- }
- });
- //Add all buttons to the group
- group.add(sequentialButton);
- group.add(loopButton);
- group.add(randomButton);
-
- add(sequentialButton);
- add(loopButton);
- add(randomButton);
- }
-
- /**
- * Called whenever the event text field changed
- */
- private synchronized void addressBarAction(JTextField tf){
-
- //Get the new text
- String sourceName = tf.getText();
-
- // if sourceName is a local path but doesn't provide an [type]://,
- // prepend file:// as default
- if(! sourceName.contains("://")) sourceName = "file://" + sourceName;
- try {
- eventManager.setEventSource(sourceName);
- eventManager.nextEvent();
- } catch (NoMoreEventsException nme) {
- JOptionPane.showMessageDialog(this, "No more events found from this source!", "No more events", JOptionPane.ERROR_MESSAGE);
- logger.warn(nme.getCauseMessages());
- } catch (InvalidEventSourceException ies) {
- JOptionPane.showMessageDialog(this, "Not a valid event source: "+sourceName, "Invalid event source", JOptionPane.ERROR_MESSAGE);
- logger.error(ies.getCauseMessages());
- } catch (ReadEventException ree ){
- JOptionPane.showMessageDialog(this, "Cannot read event(s).", "Read error", JOptionPane.ERROR_MESSAGE);
- logger.warn(ree.getCauseMessages());
- }
- }
-
- /**
- * Called whenever the previous button is pressed
- */
- private synchronized void previousButtonAction(){
-
- try {
- eventManager.previousEvent();
- } catch (NoMoreEventsException nme) {
- String msg = "Already at first event from this source!";
- JOptionPane.showMessageDialog(this, msg, "No more events", JOptionPane.ERROR_MESSAGE);
- logger.warn(nme.getCauseMessages());
- } catch (InvalidEventSourceException ies ){
- String msg = "Not a valid event source - please select one!";
- JOptionPane.showMessageDialog(this, msg, "Invalid source", JOptionPane.ERROR_MESSAGE);
- logger.warn(ies.getCauseMessages());
- } catch (ReadEventException ree ){
- String msg = "Can not read event(s)!";
- JOptionPane.showMessageDialog(this, msg, "Read error", JOptionPane.ERROR_MESSAGE);
- logger.warn(ree.getCauseMessages());
- }
- refreshAddressBar();
- }
-
- /**
- * Called whenever the next button is pressed
- */
- private synchronized void nextButtonAction(){
- try {
- eventManager.nextEvent();
- } catch (NoMoreEventsException nme) {
- String msg = "Already at last event from this source!";
- JOptionPane.showMessageDialog(this, msg, "No more events", JOptionPane.ERROR_MESSAGE);
- logger.warn(nme.getCauseMessages());
- } catch (InvalidEventSourceException ies ){
- String msg = "Not a valid event source - please select one!";
- JOptionPane.showMessageDialog(this, msg, "Invalid source", JOptionPane.ERROR_MESSAGE);
- logger.warn(ies.getCauseMessages());
- } catch (ReadEventException ree ){
- String msg = "Can not read event(s)!";
- JOptionPane.showMessageDialog(this, msg, "Read error", JOptionPane.ERROR_MESSAGE);
- logger.warn(ree.getCauseMessages());
- }
- refreshAddressBar();
- }
-
- /**
- * Update the address bar to show the current event source
- */
- private synchronized void refreshAddressBar(){
- AEventSource source = eventManager.getEventSource();
- AEvent event = eventManager.getCurrentEvent();
- if (source != null && event != null) {
- // if the source is a URL, we should always use '/' as the separator
- // else we'll use the system file separator
- if (source instanceof AURLEventSource) {
- addressBar.setText(source.getSourceName() + "/" + event.getSourceName());
- } else {
- addressBar.setText(source.getSourceName() + System.getProperty("file.separator") + event.getSourceName());
- }
- }
- }
-
- /**
- * Open a file dialog and read the selected event or directory
- */
- private synchronized void openFileButtonAction(){
- //get the last location from the default values
- String lastLoc = ADefaultValues.get("LastEventFilesSourceDir");
- //Create a file chooser dialog
- AReadFileChooser fileDialog = new AReadFileChooser(lastLoc);
- //Check if the user pressed ok in the dialog
- if ( fileDialog.showOpenDialog(null) == JFileChooser.APPROVE_OPTION) {
- //Get the selected file path, prepend file://
- String fullFilePath = "file://" + fileDialog.getSelectedFile().getPath();
-
- try {
- //Now set this as a new event source
- eventManager.setEventSource(fullFilePath);
- eventManager.nextEvent();
- } catch (NoMoreEventsException nme) {
- String msg = "No events found from this source!";
- JOptionPane.showMessageDialog(this, msg, "No more events", JOptionPane.ERROR_MESSAGE);
- logger.warn(nme.getCauseMessages());
- } catch (InvalidEventSourceException ies ){
- String msg = "Not a valid event source";
- JOptionPane.showMessageDialog(this, msg, "Invalid source", JOptionPane.ERROR_MESSAGE);
- logger.warn(ies.getCauseMessages());
- } catch (ReadEventException ree ){
- String msg = "Can not read event(s)";
- JOptionPane.showMessageDialog(this, msg, "Read error", JOptionPane.ERROR_MESSAGE);
- logger.warn(ree.getCauseMessages());
- }
- } // okay pressed - otherwise do nothing
- } // openFileButtonAction() ----------------------------------------------------
-
- /**
- * Called whenever the navigation mode is changed in the GUI
- */
- private synchronized void navigationModeAction( NavigationMode mode ){
- try {
- eventManager.setNavigationMode(mode); }
- catch (InvalidEventSourceException ies) {
- JOptionPane.showMessageDialog(this, ies.getCauseMessages(), "Invalid navigation mode", JOptionPane.ERROR_MESSAGE);
- }
- }
-
- /**
- * Called whenever the event stream is changed in the GUI
- */
- private synchronized void selectedStreamAction(AStreamedEventSource source){
-
- //Get the newly selected stream
- String stream = (String) eventStreamComboBox.getSelectedItem();
-
- try {
- //Try to set a new stream
- source.setStream(stream);
- //Also get a new event
- eventManager.nextEvent();
- //And update the event source field
- refreshAddressBar();
-
- } catch (NoMoreEventsException nme){
- //In case we already have the latest event from this stream - ignore
- } catch (InvalidStreamException ise) {
- //This can happen if the stream list changes inbetween
- //opening the popup and selecting an item
- String msg = "Cannot set stream '"+stream+"' for event source";
- JOptionPane.showMessageDialog(this, msg, "Invalid stream", JOptionPane.ERROR_MESSAGE);
- logger.error(msg+"\n"+ise.getCauseMessages());
- //Also clear the stream list
- eventStreamComboBox.removeAllItems();
- } catch (InvalidEventSourceException ies) {
- //This can happen if the source turned invalid inbetween
- //opening the popup and selecting an item
- String msg = "Invalid event source when setting new stream";
- JOptionPane.showMessageDialog(this, msg, "Invalid source", JOptionPane.ERROR_MESSAGE);
- logger.error(msg+"\n"+ies.getCauseMessages());
- //Also clear the stream list
- eventStreamComboBox.removeAllItems();
- } catch (ReadEventException ree){
- //Do nothing special with stream list in this case
- String msg = "Can not read event from new stream '"+stream+"'";
- JOptionPane.showMessageDialog(this, msg, "Invalid event", JOptionPane.ERROR_MESSAGE);
- logger.error(msg+"\n"+ree.getCauseMessages());
- }
-
- }
-
- /**
- * This is called whenever the event stream combo is poped up
- * Use this to update the event list every time
- */
- private synchronized void updateEventStreamCombo(AStreamedEventSource eventSource){
- /**
- * NOTE: We are NOT using "removeAllItems" + "addItems" to update the
- * combo box as this will always fire a new ActionEvent with the first
- * added Item. The proper way to do is to change the data model, as the
- * new data model will only fire AFTER the user selected from the open
- * ComboBox.
- */
-
- //Create an empty list
- Vector<String> streamNames = new Vector<String>();
-
- try {
- //Get the stream names
- streamNames = eventSource.getAvailableStreams();
- } catch (InvalidEventSourceException ies) {
- //If we fail to update the list show some messages
- //NOTE: we can not show dialog here, as this will steal the focus
- // from the combo box, so it does not pop-down later on
- String msg = "Invalid event source when getting stream list";
- //JOptionPane.showMessageDialog(this, msg, "Invalid source", JOptionPane.ERROR_MESSAGE);
- logger.error(msg+"\n"+ies.getCauseMessages());
- }
-
- //In any case update the stream list by setting a new data model
- // -- even if it is empty
- finally {
- //Create a new data model
- DefaultComboBoxModel newDataModel = new DefaultComboBoxModel(streamNames);
- //Select the same stream we had before, if its still there
- newDataModel.setSelectedItem(eventStreamComboBox.getSelectedItem());
- //Now install the new DataModel
- eventStreamComboBox.setModel(newDataModel);
- }
- }
-
- /**
- * This implementation of the ANewEventSourceListener gets called whenever
- * the event source changes in AEventManager
- * @param eventSource the new event source (final as being bound by combo action listener)
- */
- public synchronized void newEventSource(final AEventSource eventSource) {
-
- //Stream selection is off by default
- eventStreamComboBox.setVisible(false);
-
- //Check if this event source supports streams
- if (eventSource instanceof AStreamedEventSource){
-
- AStreamedEventSource streamedSource = (AStreamedEventSource) eventSource;
-
- //Update the list in the event stream combo box
- updateEventStreamCombo(streamedSource);
-
- //Temporarily remove all the update handler
- for (ActionListener al : eventStreamComboBox.getActionListeners())
- eventStreamComboBox.removeActionListener(al);
- for (PopupMenuListener pml : eventStreamComboBox.getPopupMenuListeners())
- eventStreamComboBox.removePopupMenuListener(pml);
-
- try {
- //Now right away select the stream given by the event source
- eventStreamComboBox.setSelectedItem(((AStreamedEventSource) eventSource).getStream());
- } catch (InvalidEventSourceException ies) {
- //If we fail to update the list show some messages
- String msg = "Invalid event source when getting stream list";
- JOptionPane.showMessageDialog(this, msg, "Invalid source", JOptionPane.ERROR_MESSAGE);
- logger.error(msg+"\n"+ies.getCauseMessages());
- } catch (NoMoreEventsException nme) {
- //If we fail to update the list show some messages
- String msg = "No streams (yet) available for this source";
- JOptionPane.showMessageDialog(this, msg, "Invalid source", JOptionPane.ERROR_MESSAGE);
- logger.error(msg+"\n"+nme.getCauseMessages());
- }
-
- //(Re-)set the update handler
- eventStreamComboBox.addActionListener( new ActionListener () {
- public void actionPerformed(ActionEvent e) {
- selectedStreamAction((AStreamedEventSource)eventSource);
- }
- });
-
- //Also have the combobox update its item list every time the
- //popup is selected
- eventStreamComboBox.addPopupMenuListener(new PopupMenuListener(){
- //update stream list when popup appears
- public void popupMenuWillBecomeVisible(PopupMenuEvent e) {
- updateEventStreamCombo((AStreamedEventSource)eventSource);
- }
- //Do nothing in other cases
- public void popupMenuWillBecomeInvisible(PopupMenuEvent e) {}
- public void popupMenuCanceled(PopupMenuEvent e) {}
- }
- );
-
- //Finally make it visible
- eventStreamComboBox.setVisible(true);
- }
-
- //And repaint to show/hide the combo box
- repaint();
-
- // disable all the mode buttons
- sequentialButton.setEnabled(false);
- loopButton.setEnabled(false);
- randomButton.setEnabled(false);
-
- // enable the modes that are supported by the current event source
- // and mark the current display mode as active
- if(eventSource.supportsNavigationMode(NavigationMode.SEQUENTIAL)) {
- if(eventSource.getNavigationMode() == NavigationMode.SEQUENTIAL)
- sequentialButton.setSelected(true);
- sequentialButton.setEnabled(true);
- }
-
- if(eventSource.supportsNavigationMode(NavigationMode.LOOP)) {
- if(eventSource.getNavigationMode() == NavigationMode.LOOP)
- loopButton.setSelected(true);
- loopButton.setEnabled(true);
- }
-
- if(eventSource.supportsNavigationMode(NavigationMode.RANDOM)) {
- if(eventSource.getNavigationMode() == NavigationMode.RANDOM)
- randomButton.setSelected(true);
- randomButton.setEnabled(true);
- }
-
- // change the address in the address bar to the current event source
- refreshAddressBar();
-
- } // newEventSource() -----------------------------------------------------
-}
-
diff --git a/graphics/AtlantisJava/src/atlantis/gui/AFileControl.java b/graphics/AtlantisJava/src/atlantis/gui/AFileControl.java
deleted file mode 100755
index 7cf12548f0e..00000000000
--- a/graphics/AtlantisJava/src/atlantis/gui/AFileControl.java
+++ /dev/null
@@ -1,210 +0,0 @@
-package atlantis.gui;
-
-import java.awt.Frame;
-import java.awt.event.ActionEvent;
-import java.awt.event.ActionListener;
-
-import javax.swing.JMenu;
-import javax.swing.JOptionPane;
-import javax.swing.JSeparator;
-
-import atlantis.config.ADefaultValues;
-import atlantis.data.AG4StepData;
-import atlantis.event.AEventManager;
-import atlantis.event.AEventSource.InvalidEventSourceException;
-import atlantis.event.AEventSource.NoMoreEventsException;
-import atlantis.event.AEventSource.ReadEventException;
-import atlantis.globals.AGlobals;
-import atlantis.output.ALogInterface;
-import atlantis.output.AOutput;
-import atlantis.parameters.APar;
-import atlantis.utils.ALogger;
-import javax.swing.JFileChooser;
-
-
-/**
- * The File menu in the GUI.
- */
-public class AFileControl extends JMenu
-{
- private static ALogger logger = ALogger.getLogger(AFileControl.class);
- private static AEventManager eventManager = AEventManager.instance();
- private static final AGlobals globals = AGlobals.instance();
-
- public AFileControl()
- {
- super("File");
-
- add("Read Event Locally").addActionListener(new ActionListener()
- {
- public void actionPerformed(ActionEvent e)
- {
- readEventLocally();
-
- }
- }); // add("Read Event Locally")
-
- add("Read Event From URL (live)").addActionListener(new ActionListener()
- {
- public void actionPerformed(ActionEvent e)
- {
- readEventFromURL();
- }
- }); // add("Read Event From URL")
-
- add(new JSeparator());
-
- add("Loop over events").addActionListener(new ActionListener()
- {
- public void actionPerformed(ActionEvent e)
- {
- AEventLoopDialog.getInstance().showDialog();
- }
- });
-
- add(new JSeparator());
-
- add("Save Image of Canvas").addActionListener(new ActionListener() {
- public void actionPerformed(ActionEvent e)
- {
- //Create a new dialog
- ASaveCanvasDialog dialog = new ASaveCanvasDialog();
- //And show it
- dialog.showDialog();
- }
- });
-
- add(new JSeparator());
-
- add("Event Properties").addActionListener(new ActionListener() {
- public void actionPerformed(ActionEvent e)
- {
- AEventPropertiesDialog.getInstance().setVisible(true);
- }
- }); // add("Event Properties")
-
- add(new JSeparator());
-
- add("Read Geometry").addActionListener(new ActionListener() {
- public void actionPerformed(ActionEvent e)
- {
- new AReadGeometryChooser();
- }
- }); // add("Read Geometry")
-
- add("Read G4Steps").addActionListener(new ActionListener() {
- public void actionPerformed(ActionEvent e)
- {
- AG4StepData.ReadG4Steps();
- }
- }); // add ("Read G4Steps")
-
- int userLevel = APar.instance().getUserLevel();
- if(userLevel>=3) // TODO: Use name for "debug" instead of magic number
- {
- add("Memory information").addActionListener(new ActionListener()
- {
- public void actionPerformed(ActionEvent e)
- {
- System.gc();
- long total = Runtime.getRuntime().totalMemory();
- long free = Runtime.getRuntime().freeMemory();
- long max = Runtime.getRuntime().maxMemory();
- int fac = 1024 * 1024; // Mega factor
- String newLine = System.getProperty("line.separator");
- AOutput.append("\nMemory information:"+newLine, ALogInterface.NORMAL);
- AOutput.append(" total: " + total + " B " + total / fac + " MB"+newLine, ALogInterface.NORMAL);
- AOutput.append(" free : " + free + " B " + free / fac + " MB"+newLine, ALogInterface.NORMAL);
- AOutput.append(" max : " + max + " B " + max / fac + " MB"+newLine, ALogInterface.NORMAL);
- }
- });
-
- } // if(logger.isDebugEnabled())
-
- add(new JSeparator());
-
- add("Exit").addActionListener(new ActionListener()
- {
- public void actionPerformed(ActionEvent e)
- {
- new AClosingConfirmationDialog(globals.getGuiFrame()).exitApp();
- }
- });
-
- } // AFileControl() -----------------------------------------------------
-
-
- /**
- * Open a file dialog and read the selected event or directory
- */
- private static void readEventLocally(){
- Frame gui = globals.getGuiFrame();
- //get the last location from the default values
- String lastLoc = ADefaultValues.get("LastEventFilesSourceDir");
- //Create a file chooser dialog
- AReadFileChooser fileDialog = new AReadFileChooser(lastLoc);
- //Check if the user pressed ok in the dialog
- if ( fileDialog.showOpenDialog(gui) == JFileChooser.APPROVE_OPTION) {
- //Get the selected file path, prepend file://
- String fullFilePath = "file://" + fileDialog.getSelectedFile().getPath();
-
- try {
- //Now set this as a new event source
- eventManager.setEventSource(fullFilePath);
- eventManager.nextEvent();
- } catch (NoMoreEventsException nme) {
- String msg = "No events found from this source!";
- JOptionPane.showMessageDialog(gui, msg, "No more events", JOptionPane.ERROR_MESSAGE);
- logger.warn(nme.getCauseMessages());
- } catch (InvalidEventSourceException ies ){
- String msg = "Not a valid event source";
- JOptionPane.showMessageDialog(gui, msg, "Invalid source", JOptionPane.ERROR_MESSAGE);
- logger.warn(ies.getCauseMessages());
- } catch (ReadEventException ree ){
- String msg = "Can not read event(s)";
- JOptionPane.showMessageDialog(gui, msg, "Read error", JOptionPane.ERROR_MESSAGE);
- logger.warn(ree.getCauseMessages());
- }
- } // okay pressed - otherwise do nothing
- }
-
-
- private static void readEventFromURL()
- {
- // URL may end with .zip - archive of event files, .xml - single
- // XML event file (in this case Read Next, Previous works on the web
- // directory starting from this single file) or URL only of a web
- // directory (string input considered to end with whatever else) -
- // in this case Atlantis gets the first event in the directory,
- // Read Next, Previous work as expected
- // this URL should always start with http://
-
- Frame gui = globals.getGuiFrame();
- String urlString = JOptionPane.showInputDialog(gui,
- "Enter URL:", AGlobals.instance().getLivePoint1EventsURL());
-
- //Make sure this is a proper string - otherwise abort
- if(urlString == null || urlString.trim().length()==0) return;
-
- // event manager further distinguishes the particular event
- // reader whether URL ends with .zip or .xml
- try {
- //Now set this as a new event source
- eventManager.setEventSource(urlString);
- eventManager.nextEvent();
- } catch (NoMoreEventsException nme) {
- String msg = "No events found from this source!";
- JOptionPane.showMessageDialog(gui, msg, "No more events", JOptionPane.ERROR_MESSAGE);
- logger.warn(nme.getCauseMessages());
- } catch (InvalidEventSourceException ies ){
- String msg = "Not a valid event source";
- JOptionPane.showMessageDialog(gui, msg, "Invalid source", JOptionPane.ERROR_MESSAGE);
- logger.warn(ies.getCauseMessages());
- } catch (ReadEventException ree ){
- String msg = "Can not read event(s)";
- JOptionPane.showMessageDialog(gui, msg, "Read error", JOptionPane.ERROR_MESSAGE);
- logger.warn(ree.getCauseMessages());
- }
- } // readEventFromURL() -------------------------------------------------
-
-} // class AFileControl =====================================================
diff --git a/graphics/AtlantisJava/src/atlantis/gui/AGUI.java b/graphics/AtlantisJava/src/atlantis/gui/AGUI.java
deleted file mode 100644
index a4327b37958..00000000000
--- a/graphics/AtlantisJava/src/atlantis/gui/AGUI.java
+++ /dev/null
@@ -1,572 +0,0 @@
-package atlantis.gui;
-
-import java.awt.BorderLayout;
-
-import java.awt.Rectangle;
-import java.awt.event.ActionEvent;
-import java.awt.event.ActionListener;
-import java.awt.event.MouseAdapter;
-import java.awt.event.MouseEvent;
-
-import javax.swing.event.ChangeEvent;
-import javax.swing.event.ChangeListener;
-import javax.swing.JFrame;
-import javax.swing.JMenuBar;
-import javax.swing.JOptionPane;
-import javax.swing.JPanel;
-import javax.swing.JSplitPane;
-import javax.swing.JTabbedPane;
-
-import java.net.Authenticator;
-import java.util.List;
-
-import atlantis.canvas.ACanvas;
-import atlantis.canvas.ALayoutChangeListener;
-import atlantis.canvas.AWindow;
-import atlantis.event.AEventInfoPrinter;
-import atlantis.event.AEventManager;
-import atlantis.event.AEventSource.InvalidEventSourceException;
-import atlantis.event.AEventSource.NoMoreEventsException;
-import atlantis.event.AEventSource.ReadEventException;
-import atlantis.globals.AGlobals;
-import atlantis.graphics.AIcon;
-import atlantis.graphics.dnd.ADnDLabel;
-import atlantis.graphics.dnd.ADragListener;
-import atlantis.list.AListManager;
-import atlantis.output.ALogInterface;
-import atlantis.output.AOutput;
-import atlantis.parameters.ACommandProcessor;
-import atlantis.parameters.APar;
-import atlantis.parameters.AParameter;
-import atlantis.parameters.AParameterChangeListener;
-import atlantis.parameters.AParameterSuperGroup;
-import atlantis.parameters.AParametersGroup;
-import atlantis.projection.AProjection;
-import atlantis.projection.AProjectionsManager;
-import atlantis.utils.ALogger;
-import atlantis.utils.AUtilities;
-import javax.swing.*;
-
-/**
- * The Atlantis Graphical User Interface
- * This is a singleton class (and probably one of the few cases where this is
- * justified!). By implementing the ALayoutChangeListener it adjusts its size to
- * the canvas size.
- */
-public class AGUI extends JFrame implements ChangeListener,
-ALayoutChangeListener,
-AParameterChangeListener
-{
- private final static ALogger logger = ALogger.getLogger(AGUI.class);
- private final static AGlobals globals = AGlobals.instance();
- public AEventManager eventManager = AEventManager.instance();
-
- private static AGUI instance;
-
- private static APar parameterStore = APar.instance();
-
- /** Limit the total width of Atlantis to this number of pixels (0 = screen width). */
- private int maxWidth = 0;
-
- private AItemTabbedPane[] tabbedPane;
- private AParametersPage[][] pages;
- private AParametersGroup[][] groups;
- private ChangeListener[] tabChangeListener;
- private ChangeListener outerTabChangeListener;
- private JPanel panel;
- private JSplitPane split;
- private JTabbedPane outerTabbedPane;
- private AInteractionToolBar interactionToolBar;
-
- /**
- * Public singleton instantian-accessor
- * @return the singleton instance
- */
- public static AGUI getGUI()
- {
- //Don't create any GUI in headless mode
- if (AGlobals.isAtlantisHeadless()) return null;
- //Create the GUI if it does not exist
- if (instance == null) {
- instance = new AGUI();
- globals.setGuiFrame(instance);
- }
- //return the singleton instance
- return instance;
- }
-
- /**
- * Private singleton constructor
- */
- private AGUI()
- {
- //intialize parent
- super("Atlantis GUI");
-
- //be verbose
- logger.debug("Creating GUI...");
-
- // AClosingConfirmationDialog class handles closing Atlantis
- setDefaultCloseOperation(DO_NOTHING_ON_CLOSE);
- this.addWindowListener(new AClosingConfirmationDialog(this));
-
- getContentPane().setLayout(new BorderLayout());
- AIcon.setIconImage(this);
-
- // Creating all menu bar items
- JMenuBar menuBar = constructAndGetMenuBar();
- setJMenuBar(menuBar); // set menubar to this frame
-
- // Create a new toolbar for the event sources
- AEventSourceToolBar toolBar = new AEventSourceToolBar();
- toolBar.setName("Atlantis event source toolbar");
- //Does not go into main panel as it need BorderLayout
- add(toolBar, BorderLayout.PAGE_START);
- // register as an event source listener
- eventManager.addNewEventSourceListener(toolBar);
-
- // building the panel with our own layout manager
- // Why do we actually need it??
- panel = new JPanel(new AGUILayoutManager());
-
- // setting the Window Control
- AWindowControl windowControl = new AWindowControl();
- windowControl.setName("windowControl");
- panel.add(windowControl, AGUILayoutManager.AVAILABLExPREFERRED);
-
- // setting the Parameters Table
- groups = parameterStore.getUIGroups();
- pages = new AParametersPage[groups.length][];
- tabbedPane = new AItemTabbedPane[groups.length];
- tabChangeListener = new TabChangeListener[groups.length];
-
- for(int i = 0; i < groups.length; i++)
- {
- pages[i] = new AParametersPage[groups[i].length];
- tabbedPane[i] = new AItemTabbedPane(JTabbedPane.LEFT);
-
- for(int j = 0; j < groups[i].length; j++)
- {
- pages[i][j] = new AParametersPage(groups[i][j]);
- String title = groups[i][j].getScreenName();
- tabbedPane[i].addTab(title, null,
- pages[i][j], groups[i][j].getToolTip());
- pages[i][j].setName(title);
- if(groups[i][j].getScreenName().equals("Residual") ||
- groups[i][j].getScreenName().equals("Physics") )
- tabbedPane[i].setEnabledAt(tabbedPane[i].getTabCount()-1, false);
- }
- tabbedPane[i].setSelectedIndex(-1);
- tabChangeListener[i] = new TabChangeListener();
- tabbedPane[i].addChangeListener(tabChangeListener[i]);
- tabbedPane[i].addMouseListener(new MouseAdapter()
- {
- public void mousePressed(MouseEvent e)
- {
- if(AUtilities.isRightMouseButton(e))
- {
- JTabbedPane tabbedPane = (JTabbedPane) e.getSource();
- int tab = tabbedPane.getUI().tabForCoordinate(tabbedPane, e.getX(), e.getY());
- int parentTab = ((JTabbedPane) tabbedPane.getParent()).getSelectedIndex();
- if(tab != -1)
- {
- String helpName = groups[parentTab][tab].
- getGroupName();
- AHelpSystem.getInstance().showPage(helpName);
- }
- }
- }
- });
- }
- // for loop - setting the outer Table
-
- outerTabbedPane = new AItemTabbedPane(JTabbedPane.TOP);
- outerTabbedPane.setName("parameterGroups");
- List<AParameterSuperGroup> superGroups = parameterStore.getUISuperGroups();
- for(int i = 0; i < superGroups.size(); i++) {
- AParameterSuperGroup superGroup = superGroups.get(i);
- String title = superGroup.getName();
- String toolTip = superGroup.getToolTip();
- outerTabbedPane.addTab(title, null, tabbedPane[i], toolTip);
- tabbedPane[i].setName(title);
- }
- outerTabChangeListener = new OuterTabChangeListener();
- outerTabbedPane.addChangeListener(outerTabChangeListener);
- outerTabbedPane.addMouseListener(new MouseAdapter()
- {
- public void mousePressed(MouseEvent e)
- {
- if(AUtilities.isRightMouseButton(e))
- {
- JTabbedPane tabbedPane = (JTabbedPane) e.getSource();
- int tab = tabbedPane.getUI().tabForCoordinate(tabbedPane, e.getX(), e.getY());
- if(tab != -1)
- {
- String helpName = tabbedPane.getTitleAt(tab);
- AHelpSystem.getInstance().showPage(helpName);
- }
- }
- }
- });
- panel.add(outerTabbedPane, AGUILayoutManager.AVAILABLExAVAILABLE);
-
- // Set up the output (log) pane.
- AMainLogPane outputDisplay = new AMainLogPane();
- // Make it available to all
- AOutput.setOutput(outputDisplay);
- // Display details of each new event
- AEventInfoPrinter eventInfoPrinter = new AEventInfoPrinter(outputDisplay);
- eventManager.addNewEventListener(eventInfoPrinter);
- // Put it in the GUI
- split = new JSplitPane(JSplitPane.VERTICAL_SPLIT, panel, outputDisplay);
- split.setOneTouchExpandable(true);
- split.setResizeWeight(0.75); //Give 25% to the log pane by default
- getContentPane().add(split);
-
- // setting the window, projection and group listeners
- ACanvas.getCanvas().addWindowChangeListener(this);
- String[] wName = ACanvas.getCanvas().getKnownWindowNames();
- for(int i = 0; i < wName.length; i++) {
- AWindow w = ACanvas.getCanvas().getWindow(wName[i]);
- w.addProjectionChangeListener(new ChangeListener() {
- public void stateChanged(ChangeEvent e) {
- AWindow window = (AWindow) e.getSource();
- if(window.equals(ACanvas.getCanvas().getCurrentWindow())) {
- if(interactionToolBar != null) panel.remove(interactionToolBar);
- interactionToolBar = window.getInteractionToolBar();
- if(interactionToolBar == null)
- window.getInteractionManager().forgetContext();
- else {
- // the interactions tabpanes are added here
- panel.add(interactionToolBar, AGUILayoutManager.AVAILABLExPREFERRED, 0);
- interactionToolBar.connect();
- validate();
- }
- }
- }
- });
-
- w.addGroupChangeListener(new ChangeListener() {
- public void stateChanged(ChangeEvent e) {
- AWindow window = (AWindow) e.getSource();
- if(window.equals(ACanvas.getCanvas().getCurrentWindow()))
- setSelectedTab(window.getGroupName());
- }
- });
- }
-
- // Set Authenticator for password-protected URL access to use
- // APasswordDialog.
- Authenticator.setDefault(APasswordDialog.getAuthenticator(this));
-
- } // AGUI() -------------------------------------------------------------
-
-
-
- /**
- * Limit the total width of Atlantis to this number of pixels.
- *
- * @param maxWidth the maximum allowed width in pixels (0 = screen width)
- */
- public void setMaxWidth(int maxWidth) {
- this.maxWidth = maxWidth;
- }
-
- /**
- * Constructs all menu bar (master) items and returns its instance
- * @return JMenuBar
- */
- private JMenuBar constructAndGetMenuBar()
- {
- JMenuBar menuBar = new JMenuBar();
- menuBar.add(new AFileControl()); // File menu bar item
- menuBar.add(new APreferencesControl()); // Preferences menu bar item
- menuBar.add(new AListsControl()); // List manager
-
- // Spacing, remaining buttons are aligned to the right
- menuBar.add(Box.createHorizontalGlue());
-
- // Reset button
- AMenuButton defaults = new AMenuButton("Reset");
- defaults.setToolTipText("Reload default settings");
- defaults.setBorder(null);
- defaults.addActionListener(new ActionListener()
- {
- public void actionPerformed(ActionEvent e)
- {
- restoreDefaults();
- }
- });
- menuBar.add(defaults);
-
- // Demo button
- AMenuButton demoButton = new AMenuButton("Demo");
- demoButton.setToolTipText("Start Demo mode");
- demoButton.setBorder(null);
- demoButton.addActionListener(new ActionListener()
- {
- public void actionPerformed(ActionEvent e)
- {
- ADemoDialog.getInstance().setVisible(true);
- }
- });
- menuBar.add(demoButton);
-
- // Help menu item
- menuBar.add(new AHelpControl());
-
- return menuBar;
-
- } // constructAndGetMenuBar() -------------------------------------------
-
-
-
- /**
- * This gets called when the current layout changes in ACanvas
- */
- public void layoutChanged(ACanvas canvas) {
-
- // adapt the width of the GUI
- Rectangle screenSize = canvas.getScreenSize();
-
- int useWidth = screenSize.width;
- if (maxWidth > 0 && useWidth > maxWidth) {
- useWidth = maxWidth;
- }
-
- Rectangle canvbound = canvas.getStartupCanvasSize();
- int guiHeight = canvbound.height;
- if (canvas.getCurrentLayout().getName().equals("FULL SCREEN")) {
- int guiWidth = useWidth / 4;
- setBounds(useWidth * 3 / 4, 0, guiWidth, guiHeight);
- // minimise the gui in fullscreen mode
- int state = getExtendedState();
- state |= JFrame.ICONIFIED;
- setExtendedState(state);
- } else {
- int guiWidth = useWidth - canvbound.width - canvbound.x;
- setBounds(canvbound.x + canvbound.width, canvbound.y, guiWidth, guiHeight);
- }
- } // layoutChanged() -----------------------------------------------------
-
- /**
- * This gets called when the current window changes in ACanvas
- * @param e The ChangeEvent from the Window
- */
- public void stateChanged(ChangeEvent e)
- {
- setSelectedTab(ACanvas.getCanvas().getCurrentWindow().getGroupName());
- if(interactionToolBar != null) panel.remove(interactionToolBar);
- interactionToolBar = ACanvas.getCanvas().getCurrentWindow().getInteractionToolBar();
- // if there is an InteractionToolBar for this window (and projection)
- // add it to the GUI.
- if(interactionToolBar != null)
- {
- interactionToolBar.setName("Atlantis interaction toolbar");
- panel.add(interactionToolBar, AGUILayoutManager.AVAILABLExPREFERRED, 0);
- interactionToolBar.connect();
- }
- validate();
- } // stateChanged() -----------------------------------------------------
-
-
-
- private void setSelectedTab(String newTabName)
- {
- for(int i = 0; i < groups.length; i++)
- for(int j = 0; j < groups[i].length; j++)
- if(groups[i][j].getGroupName().equals(newTabName))
- {
- for(int k = 0; k < groups.length; k++)
- if(k != i)
- {
- if(tabbedPane[k].getSelectedIndex() != -1)
- {
- tabbedPane[k].removeChangeListener(tabChangeListener[k]);
- tabbedPane[k].setSelectedIndex( -1);
- tabbedPane[k].addChangeListener(tabChangeListener[k]);
- }
- }
- tabbedPane[i].removeChangeListener(tabChangeListener[i]);
- tabbedPane[i].setSelectedIndex(j);
- tabbedPane[i].addChangeListener(tabChangeListener[i]);
- outerTabbedPane.setSelectedIndex(i);
- if(pages[i][j].pTable != null)
- pages[i][j].pTable.refresh();
- break;
- }
- } // setSelectedTab() ---------------------------------------------------
-
-
-
- public String getCurrentGroup()
- {
- return ACanvas.getCanvas().getCurrentWindow().getGroupName();
- } // getCurrentGroup() --------------------------------------------------
-
-
-
- public void refresh()
- {
- if(groups != null)
- {
- for(int i = 0; i < groups.length; i++)
- for(int j = 0; j < groups[i].length; j++)
- if(pages[i][j].pTable != null)
- pages[i][j].pTable.refresh();
- }
- } // refresh() ----------------------------------------------------------
-
-
- public void repaintTable()
- {
- if(tabbedPane != null)
- for(int i = 0; i < tabbedPane.length; i++)
- if(tabbedPane[i] != null)
- tabbedPane[i].repaint();
- } // repaintTable() -----------------------------------------------------
-
-
-
- /**
- * Restore all the default configuration
- */
- public void restoreDefaults()
- {
- //restore default parameters
- parameterStore.restoreDefaults();
- //reset primary vertex in current event if there is one
- if (eventManager.getCurrentEvent() != null) {
- eventManager.getCurrentEvent().setPrimaryVertex();
- }
- //reset all list
- AListManager.getInstance().reset();
- //Finally refresh GUI and canvas
- this.refresh();
- ACanvas.getCanvas().restoreDefaults();
-
- } // restoreDefaults() --------------------------------------------------
-
-
-
- class TabChangeListener implements ChangeListener
- {
- public void stateChanged(ChangeEvent e)
- {
- JTabbedPane tabbedPane = (JTabbedPane) e.getSource();
- int index = tabbedPane.getSelectedIndex();
- if(index > -1)
- {
- int parentIndex = ((JTabbedPane) tabbedPane.getParent()).
- getSelectedIndex();
- String name = groups[parentIndex][index].getGroupName();
- ACommandProcessor.receive(name + ".");
- pages[parentIndex][index].repaint();
- pages[parentIndex][index].pTable.refresh();
- if(groups[parentIndex][index].getUIUsage() ==
- AParametersGroup.PROJECTION)
- {
- AProjection p = AProjectionsManager.getProjection(name);
- ACanvas.getCanvas().getCurrentWindow().setProjection(p);
- }
- }
-
- } // stateChanged() -------------------------------------------------
-
- } // class TabChangeListener ============================================
-
-
-
- class OuterTabChangeListener implements ChangeListener
- {
- public void stateChanged(ChangeEvent e)
- {
- JTabbedPane tabbedPane = (JTabbedPane) e.getSource();
- int parentIndex = tabbedPane.getSelectedIndex();
- if(parentIndex > -1)
- {
- JTabbedPane child = (JTabbedPane) tabbedPane.getSelectedComponent();
- if(child.getTabCount() == 0)
- {
- child.setSelectedIndex( -1);
- }
- else
- {
- int index = 0;
- String name = groups[parentIndex][index].getGroupName();
- // for projections don't change the current one
- if(groups[parentIndex][index].getUIUsage() ==
- AParametersGroup.PROJECTION)
- {
- name = ACanvas.getCanvas().getCurrentWindow().getProjection().
- getName();
- for(int i = 0; i < groups[parentIndex].length; ++i)
- {
- if(groups[parentIndex][i].getGroupName().equals(name))
- index = i;
- }
- }
- ACommandProcessor.receive(name + ".");
- pages[parentIndex][index].repaint();
- pages[parentIndex][index].pTable.refresh();
- if(groups[parentIndex][index].getUIUsage() ==
- AParametersGroup.PROJECTION)
- {
- AProjection p = AProjectionsManager.getProjection(name);
- ACanvas.getCanvas().getCurrentWindow().setProjection(p);
- }
- }
- }
-
- } // stateChanged() -------------------------------------------------
-
- } // class OuterTabChangeListener =======================================
-
-
-
- static class TabDragListener implements ADragListener
- {
- public void dragPerformed(Object from, Object to, int action)
- {
- String wName;
- if(to instanceof ADnDLabel)
- wName = ((ADnDLabel) to).getText();
- else if(to instanceof AWindow)
- wName = ((AWindow) to).getName();
- else
- wName = "???";
- JTabbedPane tp = (JTabbedPane) from;
- String tabName = tp.getTitleAt(tp.getSelectedIndex());
- AOutput.append("Drag of " + tabName + " into window " + wName + "\n",
- ALogInterface.COMMAND);
- parameterStore.copyCurrentGroupLocalsTo(wName);
- ACanvas.getCanvas().getWindow(wName).repaintFromScratch();
-
- } // dragPerformed() ------------------------------------------------
-
- } // class TabDragListener ==============================================
-
- @Override
- public void parameterChanged(AParameter parameter) {
- this.repaintTable();
-
- if(parameter.getName().equals("Mode")){
- int calomode = parameterStore.get("LegoPlot", "Mode").getI();
-
- //set different nphicells and netacells combinations depending on the <calo view> selection as it is used in the L1Calo configuration file
- if (calomode== 0){
- parameterStore.get("LegoPlot", "nphicells").setI(128);
- parameterStore.get("LegoPlot", "netacells").setI(200);
- }
- else if (calomode== 1){
- parameterStore.get("LegoPlot", "nphicells").setI(64);
- parameterStore.get("LegoPlot", "netacells").setI(100);
- }
- else if (calomode== 2){
- parameterStore.get("LegoPlot", "nphicells").setI(32);
- parameterStore.get("LegoPlot", "netacells").setI(50);
- }
- }
- }
-
-} // class AGUI =============================================================
diff --git a/graphics/AtlantisJava/src/atlantis/gui/AGUILayoutManager.java b/graphics/AtlantisJava/src/atlantis/gui/AGUILayoutManager.java
deleted file mode 100755
index f7959d5155e..00000000000
--- a/graphics/AtlantisJava/src/atlantis/gui/AGUILayoutManager.java
+++ /dev/null
@@ -1,131 +0,0 @@
-package atlantis.gui;
-
-import java.awt.Container;
-import java.awt.Component;
-import java.awt.Dimension;
-import java.awt.LayoutManager2;
-import javax.swing.JComponent;
-import javax.swing.JToolBar;
-
-/**
- * The layout manager used by the GUI. It arranges the componets in a column.
- * The width is set to that of the window.
- * The height is set to the preffered height of the component.
- * One of the components will take all the remaining space.
- */
-public class AGUILayoutManager implements LayoutManager2 {
-
- private final static int PxP=0;
- private final static int AxP=1;
- private final static int AxA=2;
-
- public final static Integer PREFERREDxPREFERRED=new Integer(PxP);
- public final static Integer AVAILABLExPREFERRED=new Integer(AxP);
- public final static Integer AVAILABLExAVAILABLE=new Integer(AxA);
-
- private final static String AGUI_LAYOUT_CONSTRAINT="AGUILayoutManager.StringConstraint";
-
- /**
- * Get the constraints registered for given component.
- */
- public Integer getConstraints(Component comp) {
- JComponent jc=(JComponent)comp;
-
- Integer constraint=(Integer)jc.getClientProperty(AGUI_LAYOUT_CONSTRAINT);
-
- return constraint;
- }
-
- public void addLayoutComponent(Component comp, Object constraint) {
- if(!(comp instanceof JComponent))
- throw new Error("AGUILayoutManager: not a JComponent");
-
- if(!(constraint instanceof Integer))
- throw new Error("AGUILayoutManager: not a Integer");
-
- JComponent jc=(JComponent)comp;
-
- jc.putClientProperty(AGUI_LAYOUT_CONSTRAINT, constraint);
- }
-
- public void layoutContainer(Container parent) {
- int W=parent.getSize().width;
- int H=parent.getSize().height;
-
- Component[] comp=parent.getComponents();
- int[] constraint=new int[comp.length];
-
- int AxA_Index=comp.length;
-
- for(int i=0; i<comp.length; i++) {
- constraint[i]=getConstraints(comp[i]).intValue();
- if(constraint[i]==AxA) AxA_Index=i;
- }
-
- int hi=0;
-
- for(int i=0; i<AxA_Index; i++) {
- comp[i].setSize(W, 0);
- Dimension cSize=comp[i].getPreferredSize();
-
- switch(constraint[i]) {
- case PxP:
- comp[i].setBounds((W-cSize.width)/2, hi, cSize.width, cSize.height);
- break;
-
- case AxP:
- comp[i].setBounds(0, hi, W, cSize.height);
- break;
- }
- hi+=cSize.height;
- }
-
- int hi2=H;
-
- for(int i=comp.length-1; i>AxA_Index; i--) {
- comp[i].setSize(W, 0);
- Dimension cSize=comp[i].getPreferredSize();
-
- hi2-=cSize.height;
- switch(constraint[i]) {
- case PxP:
- comp[i].setBounds((W-cSize.width)/2, hi2, cSize.width, cSize.height);
- break;
-
- case AxP:
- comp[i].setBounds(0, hi2, W, cSize.height);
- break;
- }
- }
-
- if(AxA_Index!=comp.length)
- comp[AxA_Index].setBounds(0, hi, W, hi2-hi);
- }
-
- public Dimension minimumLayoutSize(Container parent) {
- return new Dimension(0, 0);
- }
-
- public Dimension preferredLayoutSize(Container parent) {
- return new Dimension(0, 0);
- }
-
- public float getLayoutAlignmentX(Container target) {
- return 0.5f;
- }
-
- public float getLayoutAlignmentY(Container target) {
- return 0.5f;
- }
-
- public Dimension maximumLayoutSize(Container target) {
- return new Dimension(Integer.MAX_VALUE, Integer.MAX_VALUE);
- }
-
- public void addLayoutComponent(String name, Component comp) {}
-
- public void removeLayoutComponent(Component comp) {}
-
- public void invalidateLayout(Container target) {}
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/gui/AGUIUtilities.java b/graphics/AtlantisJava/src/atlantis/gui/AGUIUtilities.java
deleted file mode 100644
index e699def52eb..00000000000
--- a/graphics/AtlantisJava/src/atlantis/gui/AGUIUtilities.java
+++ /dev/null
@@ -1,167 +0,0 @@
-package atlantis.gui;
-
-import java.awt.Component;
-import java.io.BufferedOutputStream;
-import java.io.File;
-import java.io.FileNotFoundException;
-import java.io.FileOutputStream;
-import java.io.IOException;
-import java.io.OutputStream;
-
-import javax.swing.JFileChooser;
-import javax.swing.JOptionPane;
-import javax.swing.filechooser.FileFilter;
-
-import atlantis.globals.AGlobals;
-import atlantis.utils.AAtlantisException;
-import atlantis.utils.AUtilities;
-
-/**
- * Utility methods related to the GUI. Moved from utils.Utilities.
- *
- * @author waugh
- */
-public class AGUIUtilities {
-
- private static final AGlobals globals = AGlobals.instance();
-
- /**
- * Save file dialog. Show the dialog with prepared name of the file in
- * the directory. Returns the selected directory.
- *
- * @param component JDialog
- * @param directory String
- * @param fileName String
- * @param data byte[]
- * @param title String
- * @param ext extension for file filter
- * return selectedDirectory String
- */
- public static String chooseFileAndWrite(Component component, String directory,
- String fileName, byte[] data, String title, String ext)
- throws AAtlantisException
- {
- String selectedDirectory = directory;
-
- if(directory == null)
- {
- directory = AGlobals.instance().getHomeDirectory();
- }
-
- JFileChooser chooser = new JFileChooser(directory);
- chooser.setDialogTitle(title);
- chooser.setSelectedFile(new File(fileName));
- SaveDialogFileFilter filter = new SaveDialogFileFilter(ext);
- chooser.setFileFilter(filter);
-
- int returnVal = chooser.showSaveDialog(component);
-
- if(returnVal == JFileChooser.APPROVE_OPTION)
- {
- String absPath = chooser.getSelectedFile().getAbsolutePath();
- File f = new File(absPath);
- if(f.exists())
- {
- try
- {
- renameFile(absPath, title);
- }
- catch(Exception ex)
- {
- throw new AAtlantisException(ex.getMessage());
- }
- }
- // the selected file either existed and is now successfully
- // renamed, or didn't exist so can proceed to store data
- try
- {
- OutputStream s =
- new BufferedOutputStream(new FileOutputStream(absPath));
- s.write(data);
- s.close();
- selectedDirectory = chooser.getSelectedFile().getParent();
- }
- catch(FileNotFoundException ex)
- {
- String msg = "Couldn't create the file.\nInsufficient permissions.";
- throw new AAtlantisException(msg);
- }
- catch(IOException ex)
- {
- String msg = "IO Error when writing the\ndata into the file.";
- throw new AAtlantisException(msg);
- }
- }
- return selectedDirectory;
-
- } // chooseFileAndWrite() -----------------------------------------------
-
-
- /**
- * renames file (backup when saving configuration, canvas plot, etc)
- * to 'name' + backup suffix
- */
- private static void renameFile(String name, String title) throws Exception
- {
- String backupSuffix = "-backup_on_" + AUtilities.getDateTimeString();
- String dstName = name + backupSuffix;
- String errorMsg = "Renaming\n" + name + "\nto\n" + dstName + "\nfailed.";
- String msg = name + "\nexists and was successfully renamed to\n" + dstName;
-
- try
- {
- AUtilities.logger.debug("Renaming file " + name + " to " + dstName + " ...");
- File f = new File(name);
- if(! f.renameTo(new File(dstName)))
- {
- AUtilities.logger.error(errorMsg);
- throw new Exception(errorMsg);
- }
- AUtilities.logger.debug(msg);
- JOptionPane.showMessageDialog(globals.getGuiFrame(), msg, title,
- JOptionPane.INFORMATION_MESSAGE);
- }
- catch(Exception ex)
- {
- AUtilities.logger.debug(ex.getMessage(), ex);
- throw new Exception(errorMsg);
- }
-
- } // renameFile() -------------------------------------------------------
-
-
- private static class SaveDialogFileFilter extends FileFilter
- {
- private String extension = null;
-
- public SaveDialogFileFilter(String acceptedExtension)
- {
- extension = acceptedExtension;
- }
-
- // accept all directories and all files of "extension"
- public boolean accept(File f)
- {
- if (f.isDirectory())
- {
- return true;
- }
-
- String s = f.getName();
-
- if(s.toLowerCase().endsWith(extension))
- {
- return true;
- }
-
- return false;
- }
-
- public String getDescription()
- {
- return extension;
- }
-
- } // SaveDialogFileFilter ===================================================
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/gui/AHelpControl.java b/graphics/AtlantisJava/src/atlantis/gui/AHelpControl.java
deleted file mode 100755
index 787c56609d7..00000000000
--- a/graphics/AtlantisJava/src/atlantis/gui/AHelpControl.java
+++ /dev/null
@@ -1,45 +0,0 @@
-package atlantis.gui;
-
-import javax.swing.JMenu;
-import java.awt.event.ActionEvent;
-import java.awt.event.ActionListener;
-
-/**
- * The Help menu in the GUI.
- */
-public class AHelpControl extends JMenu
-{
- public AHelpControl()
- {
- super("Help");
- add("Online Help System").addActionListener(new ActionListener()
- {
- public void actionPerformed(ActionEvent e)
- {
- AHelpSystem.getInstance().showPage("HelpHowTo");
- }
- });
- add("Modifier Keys").addActionListener(new ActionListener()
- {
- public void actionPerformed(ActionEvent e)
- {
- AMouseHelpDialog.getInstance().setVisible(true);
- }
- });
- add("Current color and collection summary").addActionListener(new ActionListener()
- {
- public void actionPerformed(ActionEvent e)
- {
- AColorHelpDialog.getInstance().setVisible(true);
- }
- });
- add("About...").addActionListener(new ActionListener()
- {
- public void actionPerformed(ActionEvent e)
- {
- AAboutDialog.getInstance().setVisible(true);
- }
- });
-
- } // AHelpControl() -----------------------------------------------------
-}
diff --git a/graphics/AtlantisJava/src/atlantis/gui/AHelpSystem.java b/graphics/AtlantisJava/src/atlantis/gui/AHelpSystem.java
deleted file mode 100755
index 43ee7551bd7..00000000000
--- a/graphics/AtlantisJava/src/atlantis/gui/AHelpSystem.java
+++ /dev/null
@@ -1,118 +0,0 @@
-package atlantis.gui;
-
-import atlantis.graphics.AIcon;
-import atlantis.output.ALogInterface;
-import atlantis.output.AOutput;
-import atlantis.utils.ALogger;
-import java.awt.Dimension;
-import java.awt.Frame;
-import java.awt.Toolkit;
-import java.awt.event.WindowAdapter;
-import java.awt.event.WindowEvent;
-import java.net.URL;
-
-import javax.help.BadIDException;
-import javax.help.HelpSet;
-import javax.help.JHelp;
-import javax.swing.JFrame;
-
-
-
-public class AHelpSystem extends JFrame
-{
- private static ALogger logger = ALogger.getLogger(AHelpSystem.class);
-
- private static AHelpSystem instance = null;
- private static String hsPath = "jhelpset.hs";
- private static JHelp helpViewer = null;
-
-
- static
- {
- HelpSet hs = getHelpSet(hsPath);
- // HelpBroker hb = hs.createHelpBroker();
- helpViewer = new JHelp(hs);
- helpViewer.setCurrentID("HelpHowTo");
- }
-
-
- private AHelpSystem()
- {
- super("Atlantis Online Help");
- addWindowListener(new WindowAdapter()
- {
- public void windowClosing(WindowEvent e)
- {
- dispose();
- instance = null;
- }
- });
- this.getContentPane().add(helpViewer);
- this.setDefaultCloseOperation(JFrame.DISPOSE_ON_CLOSE);
- AIcon.setIconImage(this);
- this.setSize(900, 600);
-
- } // AHelpSystem() ------------------------------------------------------
-
-
-
- public static AHelpSystem getInstance()
- {
- if(instance == null)
- {
- instance = new AHelpSystem();
- }
- return instance;
-
- } // getInstance() ------------------------------------------------------
-
-
-
- public void showPage(String pageName)
- {
- try
- {
- helpViewer.setCurrentID(pageName);
- // clear the iconified bit (no matter whether or not it is
- // current iconified)
- Dimension screenSize = Toolkit.getDefaultToolkit().getScreenSize();
- this.setLocation((int)(Math.max(0, (screenSize.getWidth()-this.getWidth())/2)), (int)((screenSize.getHeight()-this.getHeight())/3));
- this.setExtendedState(this.getExtendedState() & ~Frame.ICONIFIED);
- this.setVisible(true);
- }
- catch(BadIDException ex)
- {
- AOutput.alwaysAppend("\nNo help for \"" + pageName + "\", sorry.\n",
- ALogInterface.BAD_COMMAND);
- }
-
- } // showPage() ---------------------------------------------------------
-
-
-
- private static HelpSet getHelpSet(String helpSetFile)
- {
- HelpSet hs = null;
- // ClassLoader cl = this.getClass().getClassLoader(); // if not static
- ClassLoader cl = AHelpSystem.class.getClassLoader();
- try
- {
- // helpSetFile must contain just the name of HelpSet file (.hs),
- // .jar file containing the whole help must be in the classpath
- // then the file is successfully found. returns null if helpSetFile
- // contains the whole absolute / relative path
- URL hsURL = HelpSet.findHelpSet(cl, helpSetFile);
- // hs = new HelpSet(null, hsURL);
- hs = new HelpSet(cl, hsURL);
- }
- catch(Exception ee)
- {
- logger.error("AHelpSystem: " + ee.getMessage(), ee);
- logger.error("AHelpSystem: " + helpSetFile + " not found");
- }
- return hs;
-
- } // getHelpSet() -------------------------------------------------------
-
-
-} // class AHelpSystem ======================================================
diff --git a/graphics/AtlantisJava/src/atlantis/gui/AInteractionToolBar.java b/graphics/AtlantisJava/src/atlantis/gui/AInteractionToolBar.java
deleted file mode 100755
index ff7e0e65234..00000000000
--- a/graphics/AtlantisJava/src/atlantis/gui/AInteractionToolBar.java
+++ /dev/null
@@ -1,429 +0,0 @@
-package atlantis.gui;
-
-import java.awt.FlowLayout;
-import java.awt.event.MouseAdapter;
-import java.awt.event.MouseEvent;
-import java.awt.event.ActionEvent;
-import java.awt.event.ActionListener;
-
-import java.lang.reflect.Constructor;
-import java.util.Hashtable;
-import java.util.Vector;
-
-import javax.swing.ButtonGroup;
-import javax.swing.ImageIcon;
-import javax.swing.JPanel;
-import javax.swing.JPopupMenu;
-import javax.swing.JToggleButton;
-import javax.swing.JToolBar;
-
-import org.w3c.dom.Node;
-import org.w3c.dom.NodeList;
-
-import atlantis.canvas.ACanvas;
-import atlantis.canvas.AWindow;
-import atlantis.globals.AGlobals;
-import atlantis.graphics.layout.AFlowLayout;
-import atlantis.interactions.AInteractionGroup;
-import atlantis.interactions.AInteractionsConfigReader;
-import atlantis.interactions.AInteractionsManager;
-import atlantis.output.AExceptionHandler;
-import atlantis.projection.AProjectionsManager;
-import atlantis.utils.AUtilities;
-import javax.swing.*;
-
-/**
- * The ToolBar that appears in the GUI and shows the set of interactions for a
- * window.
- * @author maillard
- */
-
-public class AInteractionToolBar extends JToolBar {
- // the interactionsmanager this toolbar talks to
- private AInteractionsManager iManager;
-
- // currently selected group
- private AInteractionGroup currentGroup;
-
- /* previously selected group, needed for the history feature:
- * when we select a global interaction (eg SyncCursors), then all windows will use it.
- * If then we deselect it, all the windows will go back to their previous interactions */
- private AInteractionGroup previousGroup;
-
- // a panel that displays the additional controls needed by some interaction groups
- private JPanel controls;
-
- // base path for all radio button icons
- private final static String iconBasePath =
- AGlobals.instance().getHomeDirectory()+"img"+System.getProperty("file.separator")+"interaction_";
-
- // button group for all radio buttons
- private ButtonGroup buttonGroup;
-
- // vector containing all interactionsgroups belonging to this toolbar
- Vector<AInteractionGroup> groups;
-
- // make the pool for holding the Interactions Control and the projections Menus
- private static Hashtable<String, Hashtable<String, AInteractionToolBar>> interactionControlsPool =
- new Hashtable<String, Hashtable<String, AInteractionToolBar>>(20);
-
- public static Hashtable<String, Hashtable<String, JPopupMenu>> interactionMenusPool =
- new Hashtable<String, Hashtable<String, JPopupMenu>>(20);
-
- /**
- * Creates an InteractionToolBar to work with a particular
- * InteractionsManager.
- *
- * @param iManager The InteractionsManager.
- */
- public AInteractionToolBar(AInteractionsManager iManager) {
- // call parent constructor
- super();
- this.setLayout(new AFlowLayout(5, 5));
-
- //make the toolbar non-detachable (can not be detachable
- //as long as it does not sit inside an BorderLayout)
- this.setFloatable(false);
- this.setOpaque(false);
-
- this.iManager = iManager;
-
- groups = new Vector<AInteractionGroup>();
- controls = new JPanel();
- buttonGroup = new ButtonGroup();
- }
-
- /**
- * Returns the InteractionsManager associated with this InteractionToolBar.
- *
- * @return The InteractionsManager
- */
- public AInteractionsManager getInteractionsManager() {
- return iManager;
- }
-
- /**
- * Called each time by the InteractionsManager when the ToolBar is connected
- * to it. Should be used to perform some initializations.
- */
- public void connect() {
- iManager.setContext(getSelectedGroup());
- if (getSelectedGroup() != null)
- AMouseHelpDialog.getInstance().processInteractionChange(getSelectedGroup().getInteractions());
- }
-
- /**
- * Adds the group to the InteractionToolBar. The group can
- * register some interactions.
- * @param group the group to be added.
- */
- public void addGroup(AInteractionGroup group, String toolTipText) {
- groups.addElement(group);
- final String groupName = group.getGroupName();
-
- // set up a button for the interaction group
- String iconPath = iconBasePath + groupName.toLowerCase() + ".png";
-
- ImageIcon newIcon = AUtilities.getFileAsImageIcon(iconPath);
- JToggleButton newButton = new JToggleButton(newIcon);
- newButton.setName(group.getGroupName());
- newButton.setToolTipText(toolTipText);
-
- // add the action listener
- newButton.addActionListener(new ActionListener() {
- public void actionPerformed(ActionEvent e) {
- buttonClicked(groupName);
- }
- });
-
- // add the mouse listener for the help system
- newButton.addMouseListener(new MouseAdapter() {
- public void mousePressed(MouseEvent e) {
- // if the user right clicks on a button
- if (AUtilities.isRightMouseButton(e)) {
- JToggleButton butt = (JToggleButton) e.getSource();
- // find the corresponding interactions group
- if(findGroup(butt.getName()) != null) {
- String className = findGroup(butt.getName()).getClass().getName();
- String temp = className.substring(className.lastIndexOf('.') + ".A".length());
- className = temp.substring(0, temp.length() - "Group".length());
- // show the help page for the group
- AHelpSystem.getInstance().showPage(className);
- }
- }
- }
- });
-
- // remove the controls panel so that the new button will
- // not appear after it
- this.remove(controls);
-
- // add the button to the ButtonGroup and to the ToolBar
- buttonGroup.add(newButton);
- this.add(newButton);
-
- // now we can put the controls panel back
- this.add(controls,-1);
-
- // repaint the toolbar
- this.validate();
- this.repaint();
- }
-
- /**
- * Returns an array containing all the groups registered in this ToolBar.
- * @return the groups
- */
- public AInteractionGroup[] getGroups() {
- return (AInteractionGroup[]) groups.toArray(new AInteractionGroup[0]);
- }
-
- /**
- * Returns the current interactionsgroup.
- * @return the selected group.
- */
- public AInteractionGroup getSelectedGroup() {
- return currentGroup;
- }
-
- /**
- * Returns the name of the current interactionsgroup.
- *
- * @return the selected group name.
- */
- public String getSelectedGroupName() {
- return currentGroup.getGroupName();
- }
-
- /**
- * Sets the interactionsgroup given its name, by
- * performing a click on it.
- * @param groupName the name of the group.
- */
- public void setSelectedGroup(String groupName) {
- // loop through the interaction groups
- for(AInteractionGroup iG : groups) {
- // find the one with the corresponding name
- if(iG.getGroupName().equals(groupName)) {
- // click the corresponding button
- for(int i = 0; i < groups.size(); i++) {
- if(this.getComponentAtIndex(i) instanceof JToggleButton
- && this.getComponentAtIndex(i).getName().equals(groupName)) {
- ((JToggleButton) this.getComponentAtIndex(i)).doClick();
- return;
- }
- }
- }
- }
- }
-
- /**
- * Returns a group based on its name
- * @return the interactionsgroup (if found) or null
- */
- public AInteractionGroup findGroup(String screenName) {
- for(AInteractionGroup iG : groups) {
- if(iG.getGroupName().equals(screenName)) return iG;
- }
- return null;
- }
-
- /**
- * Activate the default interactionsgroup (the first one)
- */
- public void setDefaultGroup() {
- // if there are any interaction groups
- if (groups.size() > 0) {
- // select the first one
- setSelectedGroup(groups.elementAt(0).getGroupName());
- }
- }
-
- /**
- * Restore the previously selected group, if there was one.
- */
- public void restorePreviousGroup() {
- if (previousGroup != null)
- this.setSelectedGroup(previousGroup.getGroupName());
- }
-
- /**
- * This gets called when one of the buttons in the toolbar
- * is clicked. It notifies the InteractionManager.
- * @param groupName the name of the InteractionGroup to be activated
- */
- public void buttonClicked(String groupName) {
- AInteractionGroup deselectedGroup = currentGroup;
- // loop through the groups
- for(AInteractionGroup iG : groups) {
- // find the one with the corresponding name
- if(iG.getGroupName().equals(groupName)) {
- // notify the interactionsmanager of the change
- iManager.setContext(iG);
-
- // remove the old additional controls panel, add the new one
- this.remove(controls);
- if(iG.hasAdditionalControls()) controls = iG.getAdditionalControls();
- else controls = new JPanel();
- this.add(controls,-1);
- if (this.getParent() != null) {
- this.getParent().validate();
- }
-
- // take care of the history (previousGroup remembers the last non-global group)
- AMouseHelpDialog.getInstance().processInteractionChange(iG.getInteractions());
- if (currentGroup != null && currentGroup.isWindowGroup()) {
- previousGroup = currentGroup;
- }
- currentGroup = iG;
-
- if(ACanvas.getCanvas().getCurrentWindow() != null)
- // if the interactionsgroup is global, update the other windows
- if ((iG.isCanvasGroup()) && iManager.getWindow().isCurrent()) {
- String[] wName = ACanvas.getCanvas().getCurrentLayout().getWindowNames();
- for (int i = 0; i < wName.length; i++)
- if (!wName[i].equals(iManager.getWindow().getName())) {
- ACanvas.getCanvas().getWindow(wName[i])
- .getInteractionToolBar().setSelectedGroup(iG.getGroupName());
- }
- }
- // if a global interactionsgroup was deselected, restore the
- // previous groups in all the other windows
- if(deselectedGroup != null && deselectedGroup.isCanvasGroup()
- && iManager.getWindow().isCurrent()) {
- String[] wName = ACanvas.getCanvas().getCurrentLayout().getWindowNames();
- for (int i = 0; i < wName.length; i++)
- if (!wName[i].equals(iManager.getWindow().getName()))
- ACanvas.getCanvas().getWindow(wName[i])
- .getInteractionToolBar().restorePreviousGroup();
- }
- }
- }
- }
-
- /**
- * Used to get the InteractionControl object for a specific window and projection.
- * @param wName The name of the window
- * @param pName The name of the projection
- * @return The AInteractionToolBar for that window and projection
- */
- public static AInteractionToolBar getInteractionToolBar(String wName, String pName) {
- if(!ACanvas.getCanvas().isValidWindowName(wName))
- throw new Error("Invalid window name");
-
- if(!AProjectionsManager.isValidProjection(pName))
- throw new Error("Invalid projection name");
-
- Hashtable<String, AInteractionToolBar> list = interactionControlsPool.get(wName);
-
- if(list==null) {
- list=new Hashtable<String, AInteractionToolBar>(10);
- interactionControlsPool.put(wName, list);
- }
-
- AInteractionToolBar control=list.get(pName);
-
- if(control==null) {
- control=makeInteractionToolBar(ACanvas.getCanvas().getWindow(wName),
- AInteractionsConfigReader.getNode(pName));
- // if there really existed an InteractionControl register it.
- if(control!=null)
- list.put(pName, control);
- }
-
- return control;
- }
-
- /**
- * Returns the Interaction's PopupMenu.
- * @param window
- * @return the new popup menu object
- */
- public static JPopupMenu getInteractionMenu(AWindow window) {
- String wName=window.getName();
- String pName=window.getProjection().getName();
-
- if(!ACanvas.getCanvas().isValidWindowName(wName))
- throw new Error("Invalid window name");
-
- if(!AProjectionsManager.isValidProjection(pName))
- throw new Error("Invalid projection name");
-
- Hashtable<String, JPopupMenu> list=interactionMenusPool.get(wName);
-
- if(list==null) {
- list=new Hashtable<String, JPopupMenu>(10);
- interactionMenusPool.put(wName, list);
- }
-
- JPopupMenu menu=list.get(pName);
-
- if(menu==null) {
- menu=makePopupMenu(getInteractionToolBar(wName, pName));
- list.put(pName, menu);
- }
-
- return menu;
- }
-
- /** Creates the AInteractionToolBar and returns a pointer to it
- *
- * @param window
- * @param node
- * @return the interaction tool bar
- */
- public static AInteractionToolBar makeInteractionToolBar(AWindow window, Node node) {
- // check whether we really got a Node with information. If not return null;
- if(node==null) return null;
-
- AInteractionToolBar root=new AInteractionToolBar(window.getInteractionManager());
-
- NodeList childs=node.getChildNodes();
-
- for(int i=0; i<childs.getLength(); i++) {
- Node child=childs.item(i);
-
- if(child.getNodeType()==Node.ELEMENT_NODE) {
- String fileName=child.getAttributes().getNamedItem("fileName").getNodeValue();
- String screenName=child.getAttributes().getNamedItem("screenName").getNodeValue();
- String toolTip=child.getAttributes().getNamedItem("toolTip").getNodeValue();
-
- if(child.getNodeName().equals("Panel"))
- root.addGroup(makeInteractionGroup(window, fileName, screenName), toolTip);
- }
- }
-
- //Also select the default interaction group
- root.setDefaultGroup();
-
- return root;
- }
-
- private static AInteractionGroup makeInteractionGroup(
- AWindow window, String fileName, String screenName) {
- Object group=null;
-
- try {
- Constructor[] c=Class.forName("atlantis.interactions.A"+fileName+"Group").getDeclaredConstructors();
-
- group=c[0].newInstance(new Object[] {window.getInteractionManager()});
- } catch(Exception e) {
- e.printStackTrace();
- AExceptionHandler.processException("Cannot make interaction group "+"A"+fileName+"Group", e);
- }
- ((AInteractionGroup)group).setGroupName(screenName);
- return(AInteractionGroup)group;
- }
-
- private static JPopupMenu makePopupMenu(AInteractionToolBar root) {
- JPopupMenu menu=new JPopupMenu();
-
- AInteractionGroup[] panels=root.getGroups();
-
- for(int i=0; i<panels.length; i++)
- menu.add(panels[i].getPopupItem());
-
- return menu;
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/gui/AItemTabbedPane.java b/graphics/AtlantisJava/src/atlantis/gui/AItemTabbedPane.java
deleted file mode 100755
index 901642ad4d7..00000000000
--- a/graphics/AtlantisJava/src/atlantis/gui/AItemTabbedPane.java
+++ /dev/null
@@ -1,144 +0,0 @@
-package atlantis.gui;
-
-import java.awt.*;
-import java.awt.event.*;
-import javax.swing.*;
-import javax.swing.event.*;
-
-// Gary- DnD facility commented out as it does not fully work
-// ( Window control is left in funny state)
-// and is not something i have ever used.....
-
-/**
- * A TabbedPane which generates events when a tab is selected
- * and when a tab is deselected.
- * Provides DnD support.
- */
-public class AItemTabbedPane extends JTabbedPane
- implements // for Item Selectability
- ItemSelectable, ChangeListener {
-// // for drag and drop
-// DragSourceListener, DragGestureListener, ACallBack {
-
- private Component current;
- private Component previous;
- private ItemListener itemListener;
- private ItemEvent itemEvent;
-
-// private DragSource dragSource=null;
-// private Vector dragListeners;
-
- public AItemTabbedPane(int tabPlacement) {
- super(tabPlacement);
- // tabs don't change on right click rather help appears.
- setUI(new ATabbedPaneUI());
-
- current=null;
- previous=null;
- this.addChangeListener(this);
-
-// // initializing drag and drop
-// dragSource=new DragSource();
-// dragSource.createDefaultDragGestureRecognizer(this, DnDConstants.ACTION_MOVE, this);
-
-// dragListeners=new Vector();
- }
-
- public Component getPreviousSelectedComponent() {
- if(previous==null)
- return getSelectedComponent();
- else
- return previous;
- }
-
- public void stateChanged(ChangeEvent e) {
- previous=current;
-
- if((current!=null)&&(itemListener!=null)) {
- itemEvent=new ItemEvent(this, 0, current, ItemEvent.DESELECTED);
- itemListener.itemStateChanged(itemEvent);
- }
-
- current=getSelectedComponent();
-
- if(itemListener!=null) {
- itemEvent=new ItemEvent(this, 0, current, ItemEvent.SELECTED);
- itemListener.itemStateChanged(itemEvent);
- }
- }
-
- // Add a listener to recieve item events when the state of an tab changes.
- public void addItemListener(ItemListener l) {
- itemListener=l;
- }
-
- // Returns the selected items or null if no items are selected.
- public Object[] getSelectedObjects() {
- return null;
- }
-
- // Removes an item listener.
- public void removeItemListener(ItemListener l) {
- if(itemListener.equals(l))
- itemListener=null;
- }
-
- public Dimension getPreferredSize() {
- this.getLayout().layoutContainer(this);
- return super.getPreferredSize();
- }
-
-/*
- // implementation of DragSourceListener
-
- // This method is invoked to signify that the Drag and Drop operation is complete.
- public void dragDropEnd(DragSourceDropEvent dsde) {}
-
- // Called as the hotspot enters a platform dependent drop site.
- public void dragEnter(DragSourceDragEvent dsde) {
- dsde.getDragSourceContext().setCursor(ADnDLabel.DROP_VALID);
- }
-
- // Called as the hotspot exits a platform dependent drop site.
- public void dragExit(DragSourceEvent dse) {
- dse.getDragSourceContext().setCursor(ADnDLabel.DROP_INVALID);
- }
-
- // Called as the hotspot moves over a platform dependent drop site.
- public void dragOver(DragSourceDragEvent dsde) {
- dsde.getDragSourceContext().setCursor(ADnDLabel.DROP_VALID);
- }
-
- // Called when the user has modified the drop gesture.
- public void dropActionChanged(DragSourceDragEvent dsde) {}
-
- // implementation of DragGestureListener
-
- public void dragGestureRecognized(DragGestureEvent dge) {
- Point p=dge.getDragOrigin();
-
- if(getSelectedIndex()==getUI().tabForCoordinate(this, p.x, p.y)) {
- AObjectTransferable cbt=new AObjectTransferable(this);
-
- dragSource.startDrag(dge, ADnDLabel.DROP_INVALID, cbt, this);
- }
- }
-
- public void callBack(Object to) {
- for(int i=0; i<dragListeners.size(); i++)
- ((ADragListener)dragListeners.get(i)).dragPerformed(this, to, -1);
- }
-
- public void addDragListener(ADragListener l) {
- dragListeners.addElement(l);
- }
-
- public void addChangeListener(ChangeListener l) {
- super.addChangeListener(l);
- }
-
- public void removeChangeListener(ChangeListener l) {
- super.removeChangeListener(l);
- }
-*/
-}
diff --git a/graphics/AtlantisJava/src/atlantis/gui/ALayoutDialog.java b/graphics/AtlantisJava/src/atlantis/gui/ALayoutDialog.java
deleted file mode 100755
index 93e07f52794..00000000000
--- a/graphics/AtlantisJava/src/atlantis/gui/ALayoutDialog.java
+++ /dev/null
@@ -1,109 +0,0 @@
-package atlantis.gui;
-
-import java.awt.BorderLayout;
-import java.awt.GridLayout;
-import java.awt.Toolkit;
-import java.awt.event.ActionEvent;
-import java.awt.event.ActionListener;
-
-import javax.swing.BorderFactory;
-import javax.swing.ButtonGroup;
-import javax.swing.JButton;
-import javax.swing.JDialog;
-import javax.swing.JPanel;
-import javax.swing.JRadioButton;
-
-import atlantis.canvas.ACanvas;
-import atlantis.globals.AGlobals;
-
-/**
- * A dialog which lets the user to select between the different layouts of the
- * canvas.
- */
-public class ALayoutDialog extends JDialog implements ActionListener
-{
- private JPanel choosePanel;
- private JPanel buttonsPanel;
- private JButton okButton, cancelButton;
- private JRadioButton selected;
-
- private static final AGlobals globals = AGlobals.instance();
-
- public ALayoutDialog()
- {
- super(globals.getGuiFrame(), "Layout Properties Dialog", true);
- setDefaultCloseOperation(DISPOSE_ON_CLOSE);
- setResizable(false);
-
- choosePanel = new JPanel();
- choosePanel.setBorder(BorderFactory.createTitledBorder(" Select Layout "));
-
- String[] layoutNames = ACanvas.getCanvas().getLayoutNames();
- ButtonGroup group = new ButtonGroup();
-
- choosePanel.setLayout(new GridLayout(layoutNames.length, 1));
- for (int i = 0; i < layoutNames.length; i++)
- {
- JRadioButton r = new JRadioButton(layoutNames[i]);
-
- r.addActionListener(this);
- if (ACanvas.getCanvas().getCurrentLayout().getName().equals(layoutNames[i]))
- {
- selected = r;
- r.setSelected(true);
- }
- else
- r.setSelected(false);
- group.add(r);
- choosePanel.add(r);
- }
- getContentPane().setLayout(new BorderLayout());
- getContentPane().add(choosePanel, BorderLayout.CENTER);
-
- okButton = new JButton("OK");
- okButton.addActionListener(new ActionListener()
- {
- public void actionPerformed(ActionEvent e)
- {
- ACanvas.getCanvas().setCurrentLayout(selected.getText());
- dispose();
- ACanvas.getCanvas().bringToFront();
- }
- });
-
- cancelButton = new JButton("Cancel");
- cancelButton.addActionListener(new ActionListener()
- {
- public void actionPerformed(ActionEvent e)
- {
- dispose();
- }
- });
-
- buttonsPanel = new JPanel();
- buttonsPanel.add(okButton);
- buttonsPanel.add(cancelButton);
- getContentPane().add(buttonsPanel, BorderLayout.SOUTH);
- pack();
-
- // set the initial location
- AGUI gui = AGUI.getGUI();
- int guiWidth = gui.getWidth();
- int guiHeight = gui.getHeight();
- int guiX = gui.getX();
- int dialogWidth = (int) this.getPreferredSize().getWidth();
- int dialogHeight = (int) this.getPreferredSize().getHeight();
- int screenWidth = Math.round((float) Toolkit.getDefaultToolkit().getScreenSize().getWidth());
- if(guiX+guiWidth+(dialogWidth-guiWidth)/2>screenWidth)
- this.setLocation(Math.max(0, screenWidth - dialogWidth), Math.max(0, (guiHeight - dialogHeight) / 3));
- else
- this.setLocation(Math.max(0, guiX + (guiWidth - dialogWidth) / 2), Math.max(0, (guiHeight - dialogHeight) / 3));
- setVisible(true);
- }
-
- public void actionPerformed(ActionEvent e)
- {
- selected = (JRadioButton) e.getSource();
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/gui/ALazyPanel.java b/graphics/AtlantisJava/src/atlantis/gui/ALazyPanel.java
deleted file mode 100755
index d6caed6c259..00000000000
--- a/graphics/AtlantisJava/src/atlantis/gui/ALazyPanel.java
+++ /dev/null
@@ -1,109 +0,0 @@
-package atlantis.gui;
-
-import java.awt.Graphics;
-import javax.swing.JPanel;
-
-/**
- * LazyPanel is an abstract base class that provides functionality
- * to defer populating a Panel object until it is actually viewed.
- * This is extremely useful when using CardLayout and tab panel
- * views because it allows the construction of the subviews to
- * be done on a pay-as-you-go basis instead of absorbing all the cost
- * of construction up front.
- *
- * If subclasses choose to override any of the following methods,
- * it is their responsibility to ensure their overridden methods
- * call the parent's method first. The methods are:
- *
- * public void paint (Graphics)
- * public void paintComponents(Graphics)
- * public void paintAll (Graphics)
- * public void repaint ()
- * public void repaint (long)
- * public void repaint (int, int, int, int)
- * public void repaint (long, int, int, int, int)
- * public void update (Graphics)
- *
- * Each of these methods ensures the panel is constructed
- * and then simply forwards the call to the parent class.
- *
- * You use this class by extending it and moving as much of the
- * constructor code as possible from the child class into the method
- * lazyConstructor.
- */
-
-public abstract class ALazyPanel extends JPanel {
-
- // We want to call the lazyConstructor only once.
- private boolean lazyConstructorCalled=false;
-
- public void paint(Graphics g) {
- callLazyConstructor();
- super.paint(g);
- }
-
- public void paintAll(Graphics g) {
- callLazyConstructor();
- super.paintAll(g);
- }
-
- public void paintComponents(Graphics g) {
- callLazyConstructor();
- super.paintComponents(g);
- }
-
- public void repaint() {
- callLazyConstructor();
- super.repaint();
- }
-
- public void repaint(long l) {
- callLazyConstructor();
- super.repaint(l);
- }
-
- public void repaint(int i1, int i2, int i3, int i4) {
- callLazyConstructor();
- super.repaint(i1, i2, i3, i4);
- }
-
- public void repaint(long l, int i1, int i2, int i3, int i4) {
- callLazyConstructor();
- super.repaint(l, i1, i2, i3, i4);
- }
-
- public void update(Graphics g) {
- callLazyConstructor();
- super.update(g);
- }
-
- /**
- * Force the lazyConstructor() method implemented in the child class
- * to be called. If this method is called more than once on
- * a given object, all calls but the first do nothing.
- */
- public synchronized final void callLazyConstructor() {
- // The general idea below is as follows:
- // 1) See if this method has already been successfully called.
- // If so, return without doing anything.
- //
- // 2) Otherwise ... call the lazy constructor.
- // 3) Call validate so that any components added are visible.
- // 4) Note that we have run.
-
- if((lazyConstructorCalled==false)&&(getParent()!=null)) {
- lazyConstructor();
- lazyConstructorCalled=true;
- validate();
- }
- }
-
- /**
- * This method must be implemented by any child class. Most of
- * the component creation code that would have gone in the constructor
- * of the child goes here instead. See the example
- * at the top.
- */
- abstract protected void lazyConstructor();
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/gui/AListsControl.java b/graphics/AtlantisJava/src/atlantis/gui/AListsControl.java
deleted file mode 100755
index 4e8810bc05c..00000000000
--- a/graphics/AtlantisJava/src/atlantis/gui/AListsControl.java
+++ /dev/null
@@ -1,28 +0,0 @@
-package atlantis.gui;
-
-import atlantis.list.AListManager;
-import atlantis.utils.AUtilities;
-import java.awt.event.MouseAdapter;
-import java.awt.event.MouseEvent;
-
-/**
- * The preferences menu.
- */
-public class AListsControl extends AMenuButton {
-
- public AListsControl() {
- super("Lists");
- this.setToolTipText("List control dialog" );
- this.setBorder(null);
- this.addMouseListener(new MouseAdapter() {
- public void mousePressed(MouseEvent e) {
- if (AUtilities.isRightMouseButton(e)) {
- AHelpSystem.getInstance().showPage("Lists");
- } else {
- AListManager.getInstance().showLists();
- }
- }
- });
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/gui/ALogPane.java b/graphics/AtlantisJava/src/atlantis/gui/ALogPane.java
deleted file mode 100644
index 693c6f4be77..00000000000
--- a/graphics/AtlantisJava/src/atlantis/gui/ALogPane.java
+++ /dev/null
@@ -1,205 +0,0 @@
-package atlantis.gui;
-
-import java.awt.Color;
-import java.awt.Toolkit;
-import java.awt.event.ActionEvent;
-import java.awt.event.ActionListener;
-import java.awt.event.MouseAdapter;
-import java.awt.event.MouseEvent;
-import javax.swing.JMenuItem;
-import javax.swing.JPopupMenu;
-import javax.swing.JScrollPane;
-import javax.swing.JTextPane;
-import javax.swing.text.BadLocationException;
-import javax.swing.text.Document;
-import javax.swing.text.Style;
-import javax.swing.text.StyleConstants;
-import javax.swing.text.StyleContext;
-
-import atlantis.output.ALogInterface;
-import atlantis.utils.ALogger;
-
-/**
- * This class is a subclass of JTextPane which can be used for any kind of
- * logging/text output window in Atlantis. It unifies the old AOutput and
- * ALogOutput classes
- *
- * @author Adam Davison
- */
-public class ALogPane extends JScrollPane implements ALogInterface {
-
- private static ALogger logger = ALogger.getLogger(ALogPane.class);
- private Style m_systemDefaultStyle = null;
-
- private JTextPane m_textPane;
- private JPopupMenu m_popupMenu;
- private JMenuItem m_menuItemClearTextPane;
-
- public ALogPane() {
- m_textPane = new JTextPane();
- m_textPane.setEditable(false);
- m_textPane.setBackground(Color.white);
-
- setViewportView(m_textPane);
- setHorizontalScrollBarPolicy(JScrollPane.HORIZONTAL_SCROLLBAR_AS_NEEDED);
- setVerticalScrollBarPolicy(JScrollPane.VERTICAL_SCROLLBAR_AS_NEEDED);
-
- // popup menu at text pane (info output at the bottom of the GUI)
- m_popupMenu = new JPopupMenu();
- m_menuItemClearTextPane = new JMenuItem("Erase info output");
- m_menuItemClearTextPane.addActionListener(new PopupMenuActionListener(this));
- m_popupMenu.add(m_menuItemClearTextPane);
-
- m_textPane.addMouseListener(new PopupMenuListener_textPane(m_popupMenu));
-
- // create style which are used to add text to the document
- StyleContext context = StyleContext.getDefaultStyleContext();
- Style defaultStyle = context.getStyle(StyleContext.DEFAULT_STYLE);
-
- Style newStyle = m_textPane.addStyle(NORMAL, defaultStyle);
-
- StyleConstants.setFontFamily(newStyle, "Courier");
- StyleConstants.setFontSize(newStyle, 14);
-
- newStyle = m_textPane.addStyle(NORMAL_BOLD, defaultStyle);
- StyleConstants.setFontFamily(newStyle, "Courier");
- StyleConstants.setFontSize(newStyle, 14);
- StyleConstants.setBold(newStyle, true);
-
- newStyle = m_textPane.addStyle(COMMAND, defaultStyle);
- StyleConstants.setFontFamily(newStyle, "Courier");
- StyleConstants.setFontSize(newStyle, 14);
- StyleConstants.setForeground(newStyle, Color.blue);
-
- newStyle = m_textPane.addStyle(BAD_COMMAND, defaultStyle);
- StyleConstants.setFontFamily(newStyle, "Courier");
- StyleConstants.setFontSize(newStyle, 14);
- StyleConstants.setForeground(newStyle, Color.red);
-
- newStyle = m_textPane.addStyle(WARNING, defaultStyle);
- // was Courier - didn't print some greek letters under Linux
- StyleConstants.setFontFamily(newStyle, "Arial");
- StyleConstants.setFontSize(newStyle, 15);
- StyleConstants.setBold(newStyle, true);
- StyleConstants.setForeground(newStyle, Color.red);
-
- newStyle = m_textPane.addStyle(TITLE, defaultStyle);
- StyleConstants.setFontFamily(newStyle, "Courier");
- StyleConstants.setFontSize(newStyle, 16);
- StyleConstants.setItalic(newStyle, true);
- StyleConstants.setForeground(newStyle, Color.blue);
-
- newStyle = m_textPane.addStyle(PICK, defaultStyle);
- // was Courier - didn't print some greek letters under Linux
- StyleConstants.setFontFamily(newStyle, "Arial");
-
- StyleConstants.setFontSize(newStyle, 13);
- StyleConstants.setItalic(newStyle, true);
- StyleConstants.setForeground(newStyle, Color.blue);
-
- // This is the way ALogOutput styled it's text, perhaps we should
- // use NORMAL instead to unify the look of all the output boxes? - AD
- m_systemDefaultStyle = context.getStyle(StyleContext.DEFAULT_STYLE);
- }
-
- @Override
- public synchronized void append(String s) {
- append(s, m_systemDefaultStyle);
- }
-
- @Override
- public synchronized void append(String s, String style) {
- append(s, m_textPane.getStyle(style));
- }
-
- private synchronized void append(String s, Style style) {
- Document document = m_textPane.getDocument();
- try {
- int size = document.getLength();
-
- // if the string being appended gets too long, which happens in the
- // demo mode runs and leads to OutOfMemory here, cut off the first
- // half of the string in the information output
- if (size > 51200) // 50kB
- {
- document.remove(0, size / 2);
-
- // another option of cutting the string would be
- // (but it doesn't preserve styles):
- // String text = textPane.getText();
- // textPane.setText(""); // clear all
- // s = text.substring(size / 2, size - 1) + s;
-
- size = document.getLength();
- }
-
- document.insertString(size, s, style);
-
- // set the scrollbar to the bottom of the window
- // previous solution:
- // scrollPane.getViewport().setViewPosition(new Point(0, 9999999));
- // was sometimes crashing with IndexOutOfBoundException
- m_textPane.setCaretPosition(document.getLength());
-
- if (style.equals(ALogInterface.BAD_COMMAND) || style.equals(ALogInterface.WARNING)) {
- Toolkit.getDefaultToolkit().beep();
- }
- } catch (BadLocationException e) {
- logger.error("Problem in ALogPane", e);
- }
- }
-
- @Override
- public void clear() {
- m_textPane.setText("");
- }
-
-}
-
-class PopupMenuListener_textPane extends MouseAdapter
-{
- private JPopupMenu popupMenu;
-
- PopupMenuListener_textPane(JPopupMenu popupMenu)
- {
- this.popupMenu = popupMenu;
- }
-
- public void mousePressed(MouseEvent evt)
- {
- showPopupMenu(evt);
- }
-
- public void mouseReleased(MouseEvent evt)
- {
- showPopupMenu(evt);
- }
-
- private void showPopupMenu(MouseEvent evt)
- {
- // decides whether right 'trigger' action was performed to show
- // the popup menu (on the text pane - info output in GUI)
- if (evt.isPopupTrigger())
- {
- popupMenu.show(evt.getComponent(), evt.getX(), evt.getY());
- }
- }
-
-} // class PopupMenuListener_textPane =======================================
-
-class PopupMenuActionListener implements ActionListener
-{
- ALogInterface adaptee;
-
- PopupMenuActionListener(ALogInterface adaptee)
- {
- this.adaptee = adaptee;
- }
-
- // clear info output if the popup menu item was pressed
- public void actionPerformed(ActionEvent e)
- {
- adaptee.clear();
- }
-
-} // class PopupMenuActionListener ==========================================
diff --git a/graphics/AtlantisJava/src/atlantis/gui/AMainLogPane.java b/graphics/AtlantisJava/src/atlantis/gui/AMainLogPane.java
deleted file mode 100644
index c493fad653f..00000000000
--- a/graphics/AtlantisJava/src/atlantis/gui/AMainLogPane.java
+++ /dev/null
@@ -1,13 +0,0 @@
-package atlantis.gui;
-
-/**
- * The main logging pane showing user information
- * @author Adam Davison
- */
-public class AMainLogPane extends ALogPane {
-
- public AMainLogPane() {
- super();
- append("Welcome to Atlantis !\n", TITLE);
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/gui/AMenuButton.java b/graphics/AtlantisJava/src/atlantis/gui/AMenuButton.java
deleted file mode 100644
index 3a939230f0d..00000000000
--- a/graphics/AtlantisJava/src/atlantis/gui/AMenuButton.java
+++ /dev/null
@@ -1,46 +0,0 @@
-package atlantis.gui;
-
-import java.awt.Dimension;
-import java.awt.FontMetrics;
-import javax.swing.JMenuItem;
-
-/**
- * AMenuButton is an object that acts like a JMenuItem but looks like a JMenu.
- * This is for the buttons that we add directly to the menu bar. It does not
- * allow the layout manager to change it size.
- *
- * @author Eric Jansen
- */
-public class AMenuButton extends JMenuItem {
-
- /** Extra space needed to make JMenuItem and JMenu look the same */
- private static int EXTRA_SPACE = 6;
-
- /** Initial preferred size */
- private Dimension size;
-
- public AMenuButton(String title) {
- super(title);
- setOpaque(false);
-
- FontMetrics fm = getFontMetrics(getFont());
- size = super.getPreferredSize();
- size.width = getMargin().left + fm.stringWidth(title)
- + getMargin().right + EXTRA_SPACE;
- }
-
- @Override
- public Dimension getMinimumSize() {
- return size;
- }
-
- @Override
- public Dimension getMaximumSize() {
- return size;
- }
-
- @Override
- public Dimension getPreferredSize() {
- return size;
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/gui/AMouseHelpDialog.java b/graphics/AtlantisJava/src/atlantis/gui/AMouseHelpDialog.java
deleted file mode 100755
index c8c691abe24..00000000000
--- a/graphics/AtlantisJava/src/atlantis/gui/AMouseHelpDialog.java
+++ /dev/null
@@ -1,312 +0,0 @@
-package atlantis.gui;
-
-import java.awt.BorderLayout;
-import java.awt.Component;
-import java.awt.Font;
-import java.awt.Frame;
-import java.awt.Toolkit;
-import java.util.ArrayList;
-import java.util.EventObject;
-import java.util.Iterator;
-import java.util.Vector;
-
-import javax.swing.JFrame;
-import javax.swing.JTable;
-import javax.swing.event.CellEditorListener;
-import javax.swing.table.AbstractTableModel;
-import javax.swing.ButtonGroup;
-import javax.swing.table.TableCellEditor;
-import javax.swing.table.TableModel;
-import javax.swing.table.TableCellRenderer;
-import javax.swing.JRadioButton;
-
-import atlantis.canvas.ACanvas;
-import atlantis.globals.AGlobals;
-import atlantis.graphics.AIcon;
-import atlantis.interactions.AInteraction;
-import atlantis.interactions.AModifier;
-
-import java.awt.event.*;
-
-/**
- * This dialog is used to display the mouse modifiers which are currently active
- * Once more a singleton, but at least a proper one (private constructor)
- */
-public class AMouseHelpDialog extends JFrame {
-
- private static JTable table;
- static Object[][] rowData;
- static Object[] columnNames;
- private static AMouseHelpDialog instance;
- private static final AGlobals globals = AGlobals.instance();
-
- /**
- * Private singleton constructor
- */
- private AMouseHelpDialog() {
- super("Help - Modifier Keys");
-
- AIcon.setIconImage(this);
-
- table = new JTable() {
- public TableCellRenderer getCellRenderer(int row, int column) {
- if (column == 0) {
- return new RadioRenderer();
- }
- // else...
- return super.getCellRenderer(row, column);
- }
-
- public TableCellEditor getCellEditor(int row, int column) {
- if (column == 0) {
- return new RadioEditor();
- } else {
- return super.getCellEditor(row, column);
- }
- }
- };
-
- table.setRowHeight(20);
-
- table.setFont(new Font("Monospaced", Font.PLAIN, table.getFont().getSize()));
- table.setRowSelectionAllowed(false);
-
- getContentPane().add(table.getTableHeader(), BorderLayout.NORTH);
- getContentPane().add(table, BorderLayout.CENTER);
- setResizable(false);
-
- // From Java 1.5 we can tell the window to be always on top
- this.setAlwaysOnTop(true);
-
- this.addWindowListener(new WindowAdapter() {
- public void windowClosing(WindowEvent e) {
- // Reset key modifier when closing the window
- AEventQueue.setDefault(AModifier.nothing);
- }
- });
-
- pack();
-
- }
-
- /**
- * Get an instance of this singleton
- * @return the AMouseHelpDialog instance
- */
- public static AMouseHelpDialog getInstance() {
- //Make sure no GUI object is created in headless mode
- if (AGlobals.isAtlantisHeadless()) return null;
-
- //Create instance if it does not exist
- if (instance == null) instance = new AMouseHelpDialog();
- return instance;
- }
-
-
- /**
- * Overwrite setVisible to ensure proper placement of the dialog
- * @param visible wether the dialog should be visible
- */
- @Override
- public void setVisible(boolean visible){
-
- //Set the proper location on the screen
- Frame gui = globals.getGuiFrame();
- int guiWidth = gui.getWidth();
- int guiX = gui.getX();
- int guiY = gui.getY();
- int dialogWidth = (int) instance.getPreferredSize().getWidth();
- int screenWidth = Math.round((float) Toolkit.getDefaultToolkit().getScreenSize().getWidth());
- if (guiX + guiWidth + (dialogWidth - guiWidth) / 2 > screenWidth)
- instance.setLocation(Math.max(0, screenWidth - dialogWidth), Math.max(0, guiY));
- else
- instance.setLocation(Math.max(0, guiX + (guiWidth - dialogWidth) / 2), Math.max(0, guiY));
-
- //And finally do set it visible!
- super.setVisible(visible);
- }
-
- public static void processInteractionChange(Vector interactions) {
- if (ACanvas.getCanvas().getCurrentWindow() == null)
- return;
-
- AModifier[] modifiers = ACanvas.getCanvas().getCurrentWindow().getInteractionManager().getMouseModifiers();
- ArrayList<AModifier> m = new ArrayList<AModifier>();
- for (int i = 0; i < modifiers.length; ++i)
- m.add(modifiers[i]);
- for (int i = 0; i < interactions.size(); ++i) {
- AModifier[] mod = ((AInteraction) interactions.get(i)).getModifiers();
- for (int j = 0; j < mod.length; ++j)
- m.add(mod[j]);
- }
-
- // remove duplicates
- for (int i = 0; i < m.size(); ++i)
- for (int j = i + 1; j < m.size(); ++j)
- if (m.get(i) != null && m.get(j) != null && ((AModifier)m.get(i)).sameAs((AModifier)m.get(j))) {
- m.set(i, null);
- }
-
- Iterator<AModifier> it = m.iterator();
- while (it.hasNext())
- if (it.next() == null)
- it.remove();
-
- // sort
- for (int i = 0; i < m.size(); ++i)
- for (int j = i + 1; j < m.size(); ++j) {
- String n = m.get(i).toKeyString();
- String o = m.get(j).toKeyString();
- if (o.length() > n.length() || (o.length() == n.length() && (o.length() > 0 && (o.charAt(0) < n.charAt(0))))) {
- AModifier temp = m.get(i);
- m.set(i, m.get(j));
- m.set(j, temp);
- }
- }
-
- int foundnull = -1;
- for (int i = 0; i < m.size(); i++) {
- AModifier mod = (AModifier)m.get(i);
- if (mod.sameAs(AModifier.nothing)) {
- foundnull = i;
- }
- }
-
- if (foundnull == -1) {
- m.add(AModifier.nothing);
- }
-
- ButtonGroup bgroup = new ButtonGroup();
-
- rowData = new Object[m.size()][3];
- for (int i = 0; i < rowData.length; ++i) {
- AModifier mod = (AModifier)m.get(i);
- JRadioButton but = new MouseHelpRadio(mod);
-
- if (mod.sameAs(AEventQueue.getDefault())) {
- but.setSelected(true);
- }
-
- if (mod.sameAs(AModifier.nothing)) {
- foundnull = i;
- }
-
- bgroup.add(but);
-
- rowData[i][0] = but;
- rowData[i][1] = mod.toKeyString();
- rowData[i][2] = mod.toDescString();
- }
-
- columnNames = new String[] { "", "Key", "Action" };
- TableModel model = new AbstractTableModel() {
- public String getColumnName(int column) {
- return columnNames[column].toString();
- }
-
- public int getRowCount() {
- return rowData.length;
- }
-
- public int getColumnCount() {
- return columnNames.length;
- }
-
- public Object getValueAt(int row, int col) {
- return rowData[row][col];
- }
-
- public boolean isCellEditable(int row, int column) {
- if (column == 0) {
- return true;
- } else {
- return false;
- }
- }
-
- public void setValueAt(Object value, int row, int col) {
- rowData[row][col] = value;
- fireTableCellUpdated(row, col);
- }
- };
-
- table.setModel(model);
- table.getColumnModel().getColumn(0).setPreferredWidth(22);
- table.getColumnModel().getColumn(1).setPreferredWidth(80);
- table.getColumnModel().getColumn(2).setPreferredWidth(300);
- instance.pack();
- }
-
- private static class MouseHelpRadio extends JRadioButton {
-
- AModifier m_mod;
-
- public MouseHelpRadio(AModifier mod) {
- m_mod = mod;
-
- this.addActionListener(new ActionListener() {
- public void actionPerformed(ActionEvent e) {
- if (isSelected()) {
- AEventQueue.setDefault(m_mod);
- }
- // Previously selected radio button doesn't always paint it's
- // unselection if you aren't careful
- getParent().repaint();
- }
- });
- }
-
- }
-
- private static class RadioRenderer implements TableCellRenderer {
-
- public RadioRenderer() {
- }
-
- public Component getTableCellRendererComponent(JTable table, Object value,
- boolean isSelected, boolean hasFocus, int row, int column) {
-
- return (JRadioButton)value;
- }
-
- }
-
- private static class RadioEditor implements TableCellEditor {
-
- private JRadioButton button;
-
- public RadioEditor() {
-
- }
-
- public Object getCellEditorValue() {
- return button;
- }
-
- public boolean shouldSelectCell(EventObject anEvent) {
- return false;
- }
-
- public boolean isCellEditable(EventObject anEvent) {
- return true;
- }
-
- public void removeCellEditorListener(CellEditorListener l) {
- }
-
- public void addCellEditorListener(CellEditorListener l) {
- }
-
- public boolean stopCellEditing() {
- return true;
- }
-
- public Component getTableCellEditorComponent(JTable table, Object value, boolean isSelected, int row, int column) {
- button = (JRadioButton)value;
- return button;
- }
-
- public void cancelCellEditing() {
- }
- }
-}
\ No newline at end of file
diff --git a/graphics/AtlantisJava/src/atlantis/gui/AMultiSpanCellTableUI.java b/graphics/AtlantisJava/src/atlantis/gui/AMultiSpanCellTableUI.java
deleted file mode 100755
index cf0054cee6d..00000000000
--- a/graphics/AtlantisJava/src/atlantis/gui/AMultiSpanCellTableUI.java
+++ /dev/null
@@ -1,81 +0,0 @@
-package atlantis.gui;
-
-import java.awt.Color;
-import java.awt.Component;
-import java.awt.Graphics;
-import java.awt.Rectangle;
-
-import javax.swing.JComponent;
-import javax.swing.plaf.basic.BasicTableUI;
-import javax.swing.table.TableCellRenderer;
-
-public class AMultiSpanCellTableUI extends BasicTableUI
-{
- public void paint(Graphics g, JComponent c)
- {
- for (int index = 0; index < table.getRowCount(); index++)
- {
- paintRow(g, index);
- }
- }
-
- private void paintRow(Graphics g, int row)
- {
- AParamGUIDataModel tableModel = (AParamGUIDataModel) table.getModel();
- ADefaultCellAttribute cellAtt = tableModel.getCellAttribute();
- int numColumns = table.getColumnCount();
-
- for (int column = 0; column < numColumns; column++)
- {
- Rectangle cellRect = table.getCellRect(row, column, true);
- int cellRow, cellColumn;
- if (cellAtt.isVisible(row, column))
- {
- cellRow = row;
- cellColumn = column;
- }
- else
- {
- cellRow = row + cellAtt.getSpan(row, column)[ADefaultCellAttribute.ROW];
- cellColumn = column + cellAtt.getSpan(row, column)[ADefaultCellAttribute.COLUMN];
- }
- paintCell(g, cellRect, cellRow, cellColumn);
- }
- }
-
- private void paintCell(Graphics g, Rectangle cellRect, int row, int column)
- {
- int spacingHeight = table.getRowMargin();
- int spacingWidth = table.getColumnModel().getColumnMargin();
-
- Color c = g.getColor();
- g.setColor(table.getGridColor());
- g.drawRect(cellRect.x, cellRect.y, cellRect.width - 1,
- cellRect.height - 1);
- g.setColor(c);
-
- cellRect.setBounds(cellRect.x + spacingWidth / 2, cellRect.y
- + spacingHeight / 2, cellRect.width - spacingWidth,
- cellRect.height - spacingHeight);
-
- if (table.isEditing() && table.getEditingRow() == row
- && table.getEditingColumn() == column)
- {
- Component component = table.getEditorComponent();
- component.setBounds(cellRect);
- component.validate();
- }
- else
- {
- TableCellRenderer renderer = table.getCellRenderer(row, column);
- Component component = table.prepareRenderer(renderer, row, column);
-
- if (component.getParent() == null)
- {
- rendererPane.add(component);
- }
- rendererPane.paintComponent(g, component, table, cellRect.x,
- cellRect.y, cellRect.width, cellRect.height, true);
- }
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/gui/AMutableCheckBox.java b/graphics/AtlantisJava/src/atlantis/gui/AMutableCheckBox.java
deleted file mode 100755
index 92390995e52..00000000000
--- a/graphics/AtlantisJava/src/atlantis/gui/AMutableCheckBox.java
+++ /dev/null
@@ -1,183 +0,0 @@
-package atlantis.gui;
-
-import java.awt.Color;
-import java.awt.Component;
-import java.awt.Container;
-import java.awt.Dimension;
-import java.awt.LayoutManager;
-import java.awt.event.ActionEvent;
-import java.awt.event.ActionListener;
-import java.awt.event.MouseAdapter;
-import java.awt.event.MouseEvent;
-import java.util.Vector;
-
-import javax.swing.BorderFactory;
-import javax.swing.JLabel;
-import javax.swing.JMenuItem;
-import javax.swing.JPanel;
-import javax.swing.JPopupMenu;
-import javax.swing.LookAndFeel;
-
-import atlantis.utils.AUtilities;
-
-/**
- * Used to display the status and the operator(<,>,=..etc) of a Cut Parameter.
- */
-public class AMutableCheckBox extends JPanel {
- private JLabel label;
- private ACheckBox checkBox;
- private javax.swing.Timer timer;
- private JPopupMenu popup;
- private String selectedText;
- private ActionListener statusActionListener, textActionListener;
- private Vector oper=new Vector();
-
- public AMutableCheckBox(String name) {
- setLayout(new AMutableCheckBoxLayout());
- setBorder(null);
-
- checkBox=new ACheckBox(name);
- checkBox.setBackground(new Color(204, 204, 204));
- checkBox.addActionListener(new ActionListener() {
- public void actionPerformed(ActionEvent e) {
- if(statusActionListener!=null)
- statusActionListener.actionPerformed(new ActionEvent(get(), 0, ""));
- }
- });
- add("CHECKBOX", checkBox);
-
- popup=new JPopupMenu();
- }
-
- // must be called after all the parameters whose added
- public void finalizeConstruction() {
- label=new JLabel("", JLabel.CENTER);
- label.setBorder(BorderFactory.createLineBorder(new Color(153, 153, 153), 1));
- LookAndFeel.installColorsAndFont(label, "CheckBox.background", "CheckBox.foreground",
- "CheckBox.font");
- add("LABEL", label);
-
- // setting the timmer and popup (if more than 2 supportedOperators)
- if(oper.size()>2) {
- timer=new javax.swing.Timer(50, new ActionListener() {
- public void actionPerformed(ActionEvent e) {
- Dimension d=label.getSize();
-
- popup.show(label, 0, d.height);
- }
- });
- timer.setRepeats(false);
- }
-
- // setting the mouse listeners
- if(oper.size()<=2)
- label.addMouseListener(new MouseAdapter() {
- public void mousePressed(MouseEvent e) {
- if(AUtilities.isRightMouseButton(e)||oper.size()==1){
- return;
- }
- String text0=(String)oper.elementAt(0);
- String text1=(String)oper.elementAt(1);
-
- if(selectedText.equals(text0)) setSelectedText(text1);
- else if(selectedText.equals(text1)) setSelectedText(text0);
-
- if(textActionListener!=null)
- textActionListener.actionPerformed(new ActionEvent(get(), 0, ""));
- }
- });
- else
- label.addMouseListener(new MouseAdapter() {
- public void mousePressed(MouseEvent e) {
- if(!AUtilities.isRightMouseButton(e))
- timer.start();
- }
-
- public void mouseReleased(MouseEvent e) {
- if(!AUtilities.isRightMouseButton(e))
- timer.stop();
- }
- });
- }
-
- private JPanel get() {
- return this;
- }
-
- public ACheckBox getCheckBox(){
- return checkBox;
- }
-
- public void addItem(String s) {
- oper.addElement(s);
-
- popup.add(s).addActionListener(new ActionListener() {
- public void actionPerformed(ActionEvent e) {
- JMenuItem item=(JMenuItem)e.getSource();
-
- setSelectedText(item.getText());
- if(textActionListener!=null)
- textActionListener.actionPerformed(new ActionEvent(get(), 0, ""));
- }
- });
- }
-
- public void setSelectedText(String text) {
- selectedText=text;
- label.setText(selectedText);
- }
-
- public String getSelectedText() {
- return selectedText;
- }
-
- public boolean getStatus() {
- return checkBox.isSelected();
- }
-
- public void setStatus(boolean status) {
- checkBox.setSelected(status);
- }
-
- public void addTextActionListener(ActionListener listener) {
- textActionListener=listener;
- }
-
- public void addStatusActionListener(ActionListener listener) {
- statusActionListener=listener;
- }
-
- public void setForeground(Color color) {
- if(checkBox!=null)
- checkBox.setForeground(color);
- }
-}
-
-class AMutableCheckBoxLayout implements LayoutManager {
- private Component checkBox, label;
-
- public void addLayoutComponent(String name, Component comp) {
- if(name.equals("CHECKBOX")) checkBox=comp;
- else if(name.equals("LABEL")) label=comp;
- }
-
- public void layoutContainer(Container parent) {
- Dimension p=parent.getSize();
- Dimension l=label.getPreferredSize();
- Dimension c=checkBox.getPreferredSize();
-
- checkBox.setBounds(0, (p.height-c.height)/2, p.width-l.width-10, c.height);
- label.setBounds(p.width-l.width-10, -1, l.width+10+1, p.height+2);
- }
-
- public Dimension minimumLayoutSize(Container parent) {
- return new Dimension(10, 10);
- }
-
- public Dimension preferredLayoutSize(Container parent) {
- return new Dimension(100, 100);
- }
-
- // Removes the specified component from the layout.
- public void removeLayoutComponent(Component comp) {}
-}
diff --git a/graphics/AtlantisJava/src/atlantis/gui/AOpenGLControl.java b/graphics/AtlantisJava/src/atlantis/gui/AOpenGLControl.java
deleted file mode 100644
index 3df9c139c01..00000000000
--- a/graphics/AtlantisJava/src/atlantis/gui/AOpenGLControl.java
+++ /dev/null
@@ -1,160 +0,0 @@
-/*
- * To change this template, choose Tools | Templates
- * and open the template in the editor.
- */
-package atlantis.gui;
-
-import atlantis.canvas.ACanvas;
-import atlantis.canvas.AWindow;
-import atlantis.canvas.AWindowGLView;
-import java.awt.Color;
-import java.awt.event.ActionEvent;
-import java.awt.event.ActionListener;
-import javax.swing.ButtonGroup;
-import javax.swing.JCheckBoxMenuItem;
-import javax.swing.JMenu;
-import javax.swing.JMenuItem;
-import javax.swing.JRadioButtonMenuItem;
-import javax.swing.JSeparator;
-import javax.swing.event.MenuEvent;
-import javax.swing.event.MenuListener;
-
-/**
- *
- * @author Adam
- */
-public class AOpenGLControl extends JMenu implements MenuListener, ActionListener {
-
- private ButtonGroup m_bg = new ButtonGroup();
- private JRadioButtonMenuItem m_fsaa0 = new JRadioButtonMenuItem("No AA");
- private JRadioButtonMenuItem m_fsaa2 = new JRadioButtonMenuItem("2x FSAA");
- private JRadioButtonMenuItem m_fsaa4 = new JRadioButtonMenuItem("4x FSAA");
- private JRadioButtonMenuItem m_fsaa6 = new JRadioButtonMenuItem("6x FSAA");
- private JRadioButtonMenuItem m_fsaa8 = new JRadioButtonMenuItem("8x FSAA");
- private JCheckBoxMenuItem m_blendborder = new JCheckBoxMenuItem("Blend Border");
- private boolean m_updating = false;
-
- public AOpenGLControl() {
- super("OpenGL");
-
- m_bg.add(m_fsaa0);
- m_bg.add(m_fsaa2);
- m_bg.add(m_fsaa4);
- m_bg.add(m_fsaa6);
- m_bg.add(m_fsaa8);
-
- add(m_fsaa0);
- add(m_fsaa2);
- add(m_fsaa4);
- add(m_fsaa6);
- add(m_fsaa8);
- add(new JSeparator());
- add(m_blendborder);
-
- m_fsaa0.addActionListener(this);
- m_fsaa2.addActionListener(this);
- m_fsaa4.addActionListener(this);
- m_fsaa6.addActionListener(this);
- m_fsaa8.addActionListener(this);
-
- m_blendborder.addActionListener(this);
-
- addMenuListener(this);
- }
-
- public void menuSelected(MenuEvent e) {
- m_updating = true;
-
- int maxFSAA = AWindowGLView.getMaxFSAA();
-
- m_fsaa2.setEnabled(false);
- m_fsaa4.setEnabled(false);
- m_fsaa6.setEnabled(false);
- m_fsaa8.setEnabled(false);
-
- if (maxFSAA >= 2) {
- m_fsaa2.setEnabled(true);
-
- if (maxFSAA >= 4) {
- m_fsaa4.setEnabled(true);
-
- if (maxFSAA >= 6) {
- m_fsaa6.setEnabled(true);
-
- if (maxFSAA >= 8) {
- m_fsaa8.setEnabled(true);
- }
- }
- }
- }
-
- int currentFSAA = AWindowGLView.getCurrentFSAA();
-
- switch (currentFSAA) {
- case 0:
- m_fsaa0.setSelected(true);
- break;
- case 2:
- m_fsaa2.setSelected(true);
- break;
- case 4:
- m_fsaa4.setSelected(true);
- break;
- case 6:
- m_fsaa6.setSelected(true);
- break;
- case 8:
- m_fsaa8.setSelected(true);
- break;
- default:
- break;
- }
-
- m_updating = false;
- }
-
- public void menuDeselected(MenuEvent e) {
- //throw new UnsupportedOperationException("Not supported yet.");
- }
-
- public void menuCanceled(MenuEvent e) {
- //throw new UnsupportedOperationException("Not supported yet.");
- }
-
- public void actionPerformed(ActionEvent e) {
- if (m_updating) {
- return;
- }
-
- JMenuItem src = (JMenuItem) (e.getSource());
-
- if (src == m_fsaa0) {
- AWindowGLView.setCurrentFSAA(0);
- } else if (src == m_fsaa2) {
- AWindowGLView.setCurrentFSAA(2);
- } else if (src == m_fsaa4) {
- AWindowGLView.setCurrentFSAA(4);
- } else if (src == m_fsaa6) {
- AWindowGLView.setCurrentFSAA(6);
- } else if (src == m_fsaa8) {
- AWindowGLView.setCurrentFSAA(8);
- } else if (src == m_blendborder) {
- int oldr = AWindow.BORDER_BACKGROUND_COLOR.getRed();
- int oldg = AWindow.BORDER_BACKGROUND_COLOR.getGreen();
- int oldb = AWindow.BORDER_BACKGROUND_COLOR.getBlue();
- int oldselr = AWindow.BORDER_SELECTED_BACKGROUND_COLOR.getRed();
- int oldselg = AWindow.BORDER_SELECTED_BACKGROUND_COLOR.getGreen();
- int oldselb = AWindow.BORDER_SELECTED_BACKGROUND_COLOR.getBlue();
- if (m_blendborder.getState()) {
- AWindow.BORDER_BACKGROUND_COLOR = new Color(oldr, oldg, oldb, 127);
- AWindow.BORDER_SELECTED_BACKGROUND_COLOR = new Color(
- oldselr, oldselg, oldselb, 127);
- } else {
- AWindow.BORDER_BACKGROUND_COLOR = new Color(oldr, oldg, oldb, 255);
- AWindow.BORDER_SELECTED_BACKGROUND_COLOR = new Color(
- oldselr, oldselg, oldselb, 255);
- }
- ACanvas.getCanvas().repaintAllFromScratch();
- }
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/gui/AParamGUIDataModel.java b/graphics/AtlantisJava/src/atlantis/gui/AParamGUIDataModel.java
deleted file mode 100755
index b1b03a9a1eb..00000000000
--- a/graphics/AtlantisJava/src/atlantis/gui/AParamGUIDataModel.java
+++ /dev/null
@@ -1,173 +0,0 @@
-package atlantis.gui;
-
-import java.awt.Component;
-import java.util.EventObject;
-import java.util.Vector;
-
-import javax.swing.JTable;
-import javax.swing.JTree;
-import javax.swing.event.CellEditorListener;
-import javax.swing.table.AbstractTableModel;
-import javax.swing.table.TableCellEditor;
-import javax.swing.table.TableCellRenderer;
-
-import atlantis.parameters.APar;
-import atlantis.parameters.AParameter;
-import atlantis.parameters.AParametersGroup;
-import atlantis.parameters.AStatusRootParameter;
-
-/**
- * The data model used to create the custom tables which contain parameters.
- */
-class AParamGUIDataModel extends AbstractTableModel implements
- TableCellEditor, TableCellRenderer
-{
- private Vector<AParameter> parametersList;
- // if there is a tree in a cell, the height of the cell should be decided by the tree
- private int[] rowHeight;
- // indicate if there is a tree in this table
- private boolean isTree = false;
- private JTree tree = null;
- private int treeRowNumber = -1;
- private ADefaultCellAttribute cellAtt;
-
- AParamGUIDataModel(AParametersGroup group)
- {
- parametersList = group.getParameters(APar.instance().getUserLevel());
- rowHeight = new int[parametersList.size()];
-
- cellAtt = new ADefaultCellAttribute(rowHeight.length, 2);
-
- for (int i = 0; i < parametersList.size(); i++)
- {
- AParameter p = (AParameter) parametersList.elementAt(i);
- if (!p.isInitialized())
- p.initialize();
- if (p instanceof AStatusRootParameter)
- {
- isTree = true;
- tree = (JTree) ((AStatusRootParameter) p).getNameComponent();
- treeRowNumber = i;
- rowHeight[i] = tree.getRowCount()
- * (int) (tree.getRowBounds(0).getHeight());
- int[] columns = { 0, 1 };
- int[] rows = { i };
- cellAtt.combine(rows, columns);
- }
- else
- rowHeight[i] = 25;
- }
- }
-
- public ADefaultCellAttribute getCellAttribute()
- {
- return cellAtt;
- }
-
- int getRowHeight(int rowIndex)
- {
- return rowHeight[rowIndex];
- }
-
- public int getTreeRow()
- {
- return treeRowNumber;
- }
-
- public boolean hasTree()
- {
- return isTree;
- }
-
- public JTree getTree()
- {
- return tree;
- }
-
- public int getRowCount()
- {
- return parametersList.size();
- }
-
- public int getColumnCount()
- {
- return 2;
- }
-
- public Object getValueAt(int rowIndex, int columnIndex)
- {
- return new Integer(0);
- }
-
- public boolean isCellEditable(int rowIndex, int columnIndex)
- {
- return true;
- }
-
- public void refresh()
- {
- for (int i = 0; i < parametersList.size(); i++)
- {
- AParameter p = (AParameter) parametersList.elementAt(i);
- p.refresh();
- }
- }
-
- // TableCellRenderer implementation
- public Component getTableCellRendererComponent(JTable table, Object value,
- boolean isSelected, boolean hasFocus, int row, int column)
- {
- return getTableCellEditorComponent(table, value, isSelected, row,
- column);
- }
-
- // TableCellEditor implementation
- public Component getTableCellEditorComponent(JTable table, Object value,
- boolean isSelected, int row, int column)
- {
- AParameter p = (AParameter) parametersList.elementAt(row);
- switch (column)
- {
- case 0:
- return p.getNameComponent();
- case 1:
- return p.getValueComponent();
- default:
- return null;
- }
- }
-
- public AParameter getParameter(int row)
- {
- return (AParameter) parametersList.elementAt(row);
- }
-
- public Object getCellEditorValue()
- {
- return new Integer(0);
- }
-
- public boolean isCellEditable(EventObject anEvent)
- {
- return true;
- }
-
- public boolean shouldSelectCell(EventObject anEvent)
- {
- return true;
- }
-
- public boolean stopCellEditing()
- {
- return true;
- }
-
- public void cancelCellEditing()
- {}
-
- public void addCellEditorListener(CellEditorListener l)
- {}
-
- public void removeCellEditorListener(CellEditorListener l)
- {}
-}
diff --git a/graphics/AtlantisJava/src/atlantis/gui/AParametersPage.java b/graphics/AtlantisJava/src/atlantis/gui/AParametersPage.java
deleted file mode 100755
index 6217ed42aa0..00000000000
--- a/graphics/AtlantisJava/src/atlantis/gui/AParametersPage.java
+++ /dev/null
@@ -1,44 +0,0 @@
-package atlantis.gui;
-
-import atlantis.graphics.layout.AFlowLayout;
-import atlantis.parameters.ACommand;
-import atlantis.parameters.AParametersGroup;
-import javax.swing.JScrollPane;
-import javax.swing.JPanel;
-
-/**
- * Used to display a table of parameters together with their associated
- * commands in the Parameters Control.
- */
-public class AParametersPage extends ALazyPanel {
- private AParametersGroup group;
- AParametersTable pTable;
-
- public AParametersPage(AParametersGroup group) {
- this.group=group;
- }
-
- protected void lazyConstructor() {
- setLayout(new AGUILayoutManager());
- setBorder(null);
-
- add(createCommandsPanel(group), AGUILayoutManager.AVAILABLExPREFERRED);
-
- pTable=new AParametersTable(group);
- pTable.setName(group.getScreenName());
- add(new JScrollPane(pTable), AGUILayoutManager.AVAILABLExAVAILABLE);
- }
-
- private JPanel createCommandsPanel(AParametersGroup group) {
- JPanel commandPanel=new JPanel(new AFlowLayout(5, 5));
-
- commandPanel.setBorder(null);
- ACommand[] commands=group.getCommands();
-
- for(int j=0; j<commands.length; j++)
- commandPanel.add(commands[j]);
-
- return commandPanel;
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/gui/AParametersTable.java b/graphics/AtlantisJava/src/atlantis/gui/AParametersTable.java
deleted file mode 100755
index 869510eaf7f..00000000000
--- a/graphics/AtlantisJava/src/atlantis/gui/AParametersTable.java
+++ /dev/null
@@ -1,253 +0,0 @@
-package atlantis.gui;
-
-import java.awt.Dimension;
-import java.awt.Rectangle;
-import java.awt.event.ActionEvent;
-import java.awt.event.ActionListener;
-import java.awt.event.MouseAdapter;
-import java.awt.event.MouseEvent;
-import java.awt.event.MouseListener;
-import java.util.Enumeration;
-
-import javax.swing.JPopupMenu;
-import javax.swing.JTable;
-import javax.swing.JTree;
-import javax.swing.event.ListSelectionEvent;
-import javax.swing.table.TableColumn;
-
-import atlantis.parameters.AParameter;
-import atlantis.parameters.AParametersGroup;
-import atlantis.parameters.AStatusRootParameter;
-import atlantis.utils.AUtilities;
-
-/**
- * The graphical object which contains all the parameter of a single group.
- * Appears in the GUI.
- */
-public class AParametersTable extends JTable
-{
- private TableColumn column;
- private AParamGUIDataModel dataModel;
- public final static String SET_GLOBAL = "Set Global";
- public final static String SET_LOCAL = "Set Local";
- public final static String SET_ALL_GLOBAL = "Set All Global";
- public final static String SET_ALL_LOCAL = "Set All Local";
-
- public AParametersTable(AParametersGroup g)
- {
- super();
- dataModel = new AParamGUIDataModel(g);
- setModel(dataModel);
- for (int i = 0; i < dataModel.getRowCount(); i++)
- this.setRowHeight(i, dataModel.getRowHeight(i));
- if (dataModel.hasTree())
- {
- JTree theTree = dataModel.getTree();
- theTree.addTreeExpansionListener(new ATreeExpansionListener(
- theTree, this, dataModel.getTreeRow()));
- }
- column = getColumnModel().getColumn(0);
- column.setHeaderValue("Name");
- column.setCellEditor(dataModel);
- column.setCellRenderer(dataModel);
- column.setPreferredWidth(110);
- column = getColumnModel().getColumn(1);
- column.setHeaderValue("Value");
- column.setCellEditor(dataModel);
- column.setCellRenderer(dataModel);
- column.setPreferredWidth(100);
- setUI(new AMultiSpanCellTableUI());
- setCellSelectionEnabled(true);
-
- addMouseListener(new MouseAdapter() {
- private int pressedX;
- private int pressedY;
-
- public void mousePressed(MouseEvent e)
- {
- int clickedRow = rowAtPoint(e.getPoint());
- int clickedCol = columnAtPoint(e.getPoint());
- final AParameter p = ((AParamGUIDataModel) getModel())
- .getParameter(clickedRow);
- if ((p instanceof AStatusRootParameter) && (clickedCol == 0))
- {
- MouseListener[] theMLs = ((JTree) p.getNameComponent())
- .getMouseListeners();
- for (int i = 0; i < theMLs.length; i++)
- {
- if (theMLs[i] instanceof AStatusRootParameter.NodeSelectionListener)
- {
- Rectangle clickedRec = getCellRect(clickedRow,
- clickedCol, false);
- ((AStatusRootParameter.NodeSelectionListener) theMLs[i])
- .setOffset(clickedRec.x, clickedRec.y);
- e.translatePoint(-clickedRec.x, -clickedRec.y);
- if (AUtilities.isRightMouseButton(e))
- theMLs[i].mousePressed(e);
- else
- {
- pressedX = e.getX();
- pressedY = e.getY();
- }
- }
- }
- return;
- }
- if (AUtilities.isRightMouseButton(e) && (clickedCol == 0))
- {
- JPopupMenu popupMenu = new JPopupMenu();
- if (p.getScope() == AParameter.LOCAL)
- {
- popupMenu.add(SET_GLOBAL).addActionListener(
- new ActionListener() {
- public void actionPerformed(ActionEvent e)
- {
- p.changeScope(AParameter.GLOBAL);
- refresh();
- }
- });
- }
- else
- {
- popupMenu.add(SET_LOCAL).addActionListener(
- new ActionListener() {
- public void actionPerformed(ActionEvent e)
- {
- p.changeScope(AParameter.LOCAL);
- refresh();
- }
- });
- }
- popupMenu.show(AParametersTable.this, e.getX(), e.getY());
- }
- }
-
- // have no idea why mouseClicked cannot be invoked when clicking the
- // table
- // only mousePressed & mouseReleased can be invoked
- public void mouseReleased(MouseEvent e)
- {
- int clickedRow = rowAtPoint(e.getPoint());
- // when the position of mouse releasing is out of the table,
- // clickedRow = -1
- // e.g. when you change a value of a combo box, and the list of
- // this combo box is rather long
- if (clickedRow < 0)
- return;
- int clickedCol = columnAtPoint(e.getPoint());
- final AParameter p = ((AParamGUIDataModel) getModel())
- .getParameter(clickedRow);
- if ((p instanceof AStatusRootParameter) && (clickedCol == 0))
- {
- MouseListener[] theMLs = ((JTree) p.getNameComponent())
- .getMouseListeners();
- for (int i = 0; i < theMLs.length; i++)
- {
- if (theMLs[i] instanceof AStatusRootParameter.NodeSelectionListener)
- {
- Rectangle clickedRec = getCellRect(clickedRow,
- clickedCol, false);
- ((AStatusRootParameter.NodeSelectionListener) theMLs[i])
- .setOffset(clickedRec.x, clickedRec.y);
- e.translatePoint(-clickedRec.x, -clickedRec.y);
- if ((pressedX == e.getX())
- && (pressedY == e.getY()))
- theMLs[i].mouseClicked(e);
- }
- }
- return;
- }
- }
- });
- // needed but I don't know why gary 25/10/2002
- refresh();
- }
-
- public void refresh()
- {
- dataModel.refresh();
- setEditingColumn(2);
- setEditingRow(0);
- }
-
- public Rectangle getCellRect(int row, int column, boolean includeSpacing)
- {
- Rectangle sRect = super.getCellRect(row, column, includeSpacing);
- if ((row < 0) || (column < 0) || (getRowCount() <= row)
- || (getColumnCount() <= column))
- {
- return sRect;
- }
- ADefaultCellAttribute cellAtt = ((AParamGUIDataModel) getModel()).getCellAttribute();
- if (!cellAtt.isVisible(row, column))
- {
- int temp_row = row;
- int temp_column = column;
- row += cellAtt.getSpan(temp_row, temp_column)[ADefaultCellAttribute.ROW];
- column += cellAtt.getSpan(temp_row, temp_column)[ADefaultCellAttribute.COLUMN];
- }
- int[] n = cellAtt.getSpan(row, column);
-
- int index = 0;
- int columnMargin = getColumnModel().getColumnMargin();
- Rectangle cellFrame = new Rectangle();
- int aCellHeight = sRect.height + rowMargin;
- cellFrame.y = sRect.y;
- cellFrame.height = n[ADefaultCellAttribute.ROW] * aCellHeight;
-
- Enumeration enumeration = getColumnModel().getColumns();
- while (enumeration.hasMoreElements())
- {
- TableColumn aColumn = (TableColumn) enumeration.nextElement();
- cellFrame.width = aColumn.getWidth() + columnMargin;
- if (index == column)
- break;
- cellFrame.x += cellFrame.width;
- index++;
- }
- for (int i = 0; i < n[ADefaultCellAttribute.COLUMN] - 1; i++)
- {
- TableColumn aColumn = (TableColumn) enumeration.nextElement();
- cellFrame.width += aColumn.getWidth() + columnMargin;
- }
-
- if (!includeSpacing)
- {
- Dimension spacing = getIntercellSpacing();
- cellFrame.setBounds(cellFrame.x + spacing.width / 2, cellFrame.y
- + spacing.height / 2, cellFrame.width - spacing.width,
- cellFrame.height - spacing.height);
- }
- return cellFrame;
- }
-
- public void columnSelectionChanged(ListSelectionEvent e)
- {
- repaint();
- }
-
- public void valueChanged(ListSelectionEvent e)
- {
- int firstIndex = e.getFirstIndex();
- int lastIndex = e.getLastIndex();
- if (firstIndex == -1 && lastIndex == -1)
- {
- repaint();
- }
- Rectangle dirtyRegion = getCellRect(firstIndex, 0, false);
- int numCoumns = getColumnCount();
- int index = firstIndex;
- for (int i = 0; i < numCoumns; i++)
- {
- dirtyRegion.add(getCellRect(index, i, false));
- }
- index = lastIndex;
- for (int i = 0; i < numCoumns; i++)
- {
- dirtyRegion.add(getCellRect(index, i, false));
- }
- repaint(dirtyRegion.x, dirtyRegion.y, dirtyRegion.width,
- dirtyRegion.height);
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/gui/APasswordDialog.java b/graphics/AtlantisJava/src/atlantis/gui/APasswordDialog.java
deleted file mode 100755
index eb54cbf2ec8..00000000000
--- a/graphics/AtlantisJava/src/atlantis/gui/APasswordDialog.java
+++ /dev/null
@@ -1,203 +0,0 @@
-package atlantis.gui;
-
-import java.awt.Frame;
-import java.awt.Container;
-import java.awt.BorderLayout;
-import java.awt.GridLayout;
-import java.awt.Toolkit;
-import java.awt.event.ActionEvent;
-import java.awt.event.ActionListener;
-
-import javax.swing.BorderFactory;
-import javax.swing.ButtonGroup;
-import javax.swing.JButton;
-import javax.swing.JDialog;
-import javax.swing.JPanel;
-import javax.swing.JTextField;
-import javax.swing.JPasswordField;
-import javax.swing.JLabel;
-import javax.swing.BoxLayout;
-
-import java.net.PasswordAuthentication;
-import java.net.Authenticator;
-
-import atlantis.utils.ALogger;
-
-/**
- * Provides a dialogue to prompt the user for a username and password for
- * reading events from a password-protected URL.
- *
- * @author waugh
- */
-public class APasswordDialog extends JDialog
-{
- private static final long serialVersionUID = 1L;
-
- private static ALogger logger = ALogger.getLogger(APasswordDialog.class);
- // input fields
- protected JTextField userField;
- protected JPasswordField passwordField;
- // authentication object containing username and password
- protected PasswordAuthentication pwAuth;
-
- /**
- * Create APasswordDialog belonging to given frame
- * @param frame owner of dialogue
- */
- protected APasswordDialog(Frame frame, String prompt) {
- // There is almost certainly a better way to do the layout...
- super(frame,"Password Dialogue",true);
- Container contentPane = getContentPane();
-
- // Create panels to place in content pane
- JPanel mainPanel = new JPanel();
- JPanel labelPanel = new JPanel();
- JPanel inputPanel = new JPanel();
- JPanel buttonPanel = new JPanel();
-
- // Create components (labels, inputs) to put in panels
- JLabel label = new JLabel(prompt);
- JLabel userLabel = new JLabel("User name");
- JLabel passwordLabel = new JLabel("Password");
- userField = new JTextField(15);
- passwordField = new JPasswordField(15);
- JButton okButton = new JButton("OK");
- JButton cancelButton = new JButton("Cancel");
-
- // Associate labels with corresponding input fields
- userLabel.setLabelFor(userField);
- passwordLabel.setLabelFor(passwordField);
-
- // Specify layout of dialogue
- contentPane.setLayout(new BoxLayout(contentPane,BoxLayout.Y_AXIS));
- mainPanel.setLayout(new BoxLayout(mainPanel,BoxLayout.X_AXIS));
- labelPanel.setLayout(new BoxLayout(labelPanel,BoxLayout.Y_AXIS));
- inputPanel.setLayout(new BoxLayout(inputPanel,BoxLayout.Y_AXIS));
- buttonPanel.setLayout(new BoxLayout(buttonPanel,BoxLayout.X_AXIS));
-
- // Put everything together: components in panels...
- contentPane.add(label);
- contentPane.add(mainPanel);
- contentPane.add(buttonPanel);
-
- mainPanel.add(labelPanel);
- mainPanel.add(inputPanel);
-
- labelPanel.add(userLabel);
- labelPanel.add(passwordLabel);
-
- inputPanel.add(userField);
- inputPanel.add(passwordField);
-
- buttonPanel.add(okButton);
- buttonPanel.add(cancelButton);
-
- // click OK: construct authentication object from given name/password
- okButton.addActionListener(new ActionListener()
- {
- public void actionPerformed(ActionEvent e) {
- String userName = userField.getText();
- char[] password = passwordField.getPassword();
- pwAuth = new PasswordAuthentication(userName,password);
- dispose();
- }
- }
- );
-
- // click cancel: dispose of dialogue with no authentication object
- cancelButton.addActionListener(new ActionListener()
- {
- public void actionPerformed(ActionEvent e) {
- pwAuth = null;
- dispose();
- }
- }
- );
- pack();
-
- // set position on screen (otherwise defaults to top left)
- int guiWidth = frame.getWidth();
- int guiHeight = frame.getHeight();
- int guiX = frame.getX();
- int dialogWidth = (int) this.getPreferredSize().getWidth();
- int dialogHeight = (int) this.getPreferredSize().getHeight();
- int screenWidth = Math.round((float) Toolkit.getDefaultToolkit().getScreenSize().getWidth());
- if(guiX+guiWidth+(dialogWidth-guiWidth)/2>screenWidth)
- this.setLocation(Math.max(0, screenWidth - dialogWidth), Math.max(0, (guiHeight - dialogHeight) / 3));
- else
- this.setLocation(Math.max(0, guiX + (guiWidth - dialogWidth) / 2), Math.max(0, (guiHeight - dialogHeight) / 3));
-
- }
-
- /**
- * Create APasswordDialog belonging to given frame, with default prompt
- * @param frame owner of dialogue
- */
- protected APasswordDialog(Frame frame) {
- this(frame,"Authentication required");
- }
-
- /** Gets authentication object
- *
- * @return PasswordAuthentication object required by Authenticator
- */
- protected PasswordAuthentication getPasswordAuthentication() {
- return pwAuth;
- }
-
- /**
- * Displays username/password dialogue and returns authentication object.
- * @param frame owner of dialogue, e.g. Atlantis GUI
- * @prompt prompt to show user
- * @return authentication object constructed from entered username/password,
- * or null if dialogue cancelled
- */
- public static PasswordAuthentication showDialog(Frame frame, String prompt) {
- APasswordDialog d = new APasswordDialog(frame,prompt);
- d.setVisible(true);
- return d.getPasswordAuthentication();
- }
-
- /**
- * Displays username/password dialogue with default prompt and returns authentication object.
- * @param frame owner of dialogue, e.g. Atlantis GUI
- * @return authentication object constructed from entered username/password,
- * or null if dialogue cancelled
- */
- public static PasswordAuthentication showDialog(Frame frame) {
- APasswordDialog d = new APasswordDialog(frame);
- d.setVisible(true);
- return d.getPasswordAuthentication();
- }
-
- /**
- * Constructs and returns Authenticator object as required by
- * java.net.Authenticator.setDefault()
- * @param f owner of dialogue, e.g. Atlantis GUI
- * @return Authenticator that will create APasswordDialog when called
- */
- public static Authenticator getAuthenticator(Frame f) {
- return new PasswordAuthenticator(f);
- }
-
- /**
- * Private nested Authenticator subclass to be instantiated and returned
- * by getAuthenticator().
- * @author waugh
- */
- private static class PasswordAuthenticator extends Authenticator {
- protected Frame f;
- public PasswordAuthenticator(Frame frame) {f=frame;}
- protected PasswordAuthentication getPasswordAuthentication() {
- logger.info("Authentication required: requesting host:"+getRequestingHost());
- logger.info("Authentication required: requesting site:"+getRequestingSite());
- logger.info("Authentication required: requesting protocol:"+getRequestingProtocol());
- logger.info("Authentication required: requesting prompt:"+getRequestingPrompt());
- logger.info("Authentication required: requesting scheme:"+getRequestingScheme());
- // logger.info("Authentication required: requesting URL:"+getRequestingURL());
- String prompt = "Authentication required by host "+getRequestingHost()+
- " with prompt \""+getRequestingPrompt()+"\"";
- return APasswordDialog.showDialog(f,prompt);
- }
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/gui/APointerPositionWindow.java b/graphics/AtlantisJava/src/atlantis/gui/APointerPositionWindow.java
deleted file mode 100755
index dffdc697ca1..00000000000
--- a/graphics/AtlantisJava/src/atlantis/gui/APointerPositionWindow.java
+++ /dev/null
@@ -1,175 +0,0 @@
-package atlantis.gui;
-
-import java.awt.Color;
-import java.awt.Frame;
-import java.awt.Toolkit;
-import java.awt.event.ActionEvent;
-import java.awt.event.ActionListener;
-import java.awt.event.MouseEvent;
-import java.awt.event.WindowEvent;
-import java.awt.event.WindowListener;
-
-import javax.swing.JFrame;
-import javax.swing.JMenuItem;
-import javax.swing.JPopupMenu;
-import javax.swing.JScrollPane;
-import javax.swing.JTextPane;
-
-import atlantis.globals.AGlobals;
-import atlantis.graphics.AIcon;
-
-import java.awt.BorderLayout;
-import java.awt.event.MouseListener;
-import javax.swing.JLabel;
-
-
-/**
- * The pointer postion window apears when selected in the preferences menu or
- * by using o+right click.
- *
- * @author Sebastian Boeser
- */
-public class APointerPositionWindow extends JFrame
- implements WindowListener, ActionListener, MouseListener
-
-{
- private static JLabel infoLabel;
- private static JPopupMenu popupMenu;
- private static JMenuItem menuItemClearTextPane;
- private static JTextPane textPane;
- private static JScrollPane scrollPane;
- private static APointerPositionWindow instance = null;
- private static final AGlobals globals = AGlobals.instance();
-
- public static APointerPositionWindow getInstance()
- {
- if (instance == null)
- instance = new APointerPositionWindow();
- return instance;
- }
-
- private APointerPositionWindow()
- {
- this.setTitle("Your Pointer Position");
- AIcon.setIconImage(this);
-
- //delete window if closed
- setDefaultCloseOperation(DISPOSE_ON_CLOSE);
- addWindowListener(this);
-
- //Tell user how to use this
- infoLabel = new JLabel();
- infoLabel.setText("To output your pointer position use: O + Right click\n");
-
- // popup menu at text pane (info output at bottom half of window)
- popupMenu = new JPopupMenu();
- menuItemClearTextPane = new JMenuItem("Erase output");
- menuItemClearTextPane.addActionListener(this);
- popupMenu.add(menuItemClearTextPane);
-
- // Text panel to show coordinates
- textPane = new JTextPane();
- textPane.setEditable(false);
- textPane.setBackground(Color.white);
- textPane.setText("Coordinates will be displayed here\n");
- textPane.addMouseListener(this);
-
- // Embedd in a scroll frame
- scrollPane = new JScrollPane(textPane);
- scrollPane.setHorizontalScrollBarPolicy(JScrollPane.HORIZONTAL_SCROLLBAR_AS_NEEDED);
- scrollPane.setVerticalScrollBarPolicy(JScrollPane.VERTICAL_SCROLLBAR_AS_NEEDED);
-
- add(infoLabel,BorderLayout.NORTH);
- add(scrollPane,BorderLayout.CENTER);
-
- // set the initial location
- Frame gui = globals.getGuiFrame();
- int guiWidth = gui.getWidth();
- int guiHeight = gui.getHeight();
- int guiX = gui.getX();
- int dialogWidth = (int) this.getPreferredSize().getWidth();
- int dialogHeight = (int) this.getPreferredSize().getHeight();
- int screenWidth = Math.round((float) Toolkit.getDefaultToolkit()
- .getScreenSize().getWidth());
- if (guiX + guiWidth + (dialogWidth - guiWidth) / 2 > screenWidth)
- this.setLocation(Math.max(0, screenWidth - dialogWidth), Math.max(
- 0, (guiHeight - dialogHeight) / 3));
- else
- this.setLocation(Math.max(0, guiX + (guiWidth - dialogWidth) / 2),
- Math.max(0, (guiHeight - dialogHeight) / 3));
- //Layout the window
- pack();
- }
-
- public static void append(String s)
- {
- String text = textPane.getText();
- int size = text.length();
- //just as a precaution incase too many coordinates output
- if(size > 51200) // 50kB
- {
- textPane.setText(""); // clear all
- text = text.substring(size / 2, size - 1) + "\n";
- }
- s = text + "\n" + s;
- textPane.setText(s);
- }
-
- void clearTextPane(ActionEvent e)
- {
- textPane.setText("Coordinates will be displayed here\n");
- }
-
- public void dispose()
- {
- instance = null;
- super.dispose();
- }
-
- // clear info output if the popup menu item was pressed
- public void actionPerformed(ActionEvent e)
- {
- clearTextPane(e);
- }
-
-
- public void windowClosed(WindowEvent e)
- {
- // when this window is disposed, the menu item is switched off
- APreferencesControl.setPosMenuItem(false);
- }
-
- public void mousePressed(MouseEvent evt)
- {
- showPopupMenu(evt);
- }
-
- public void mouseReleased(MouseEvent evt)
- {
- showPopupMenu(evt);
- }
-
- private void showPopupMenu(MouseEvent evt)
- {
- // decides whether right 'trigger' action was performed to show
- // the popup menu (on the text pane - info output in GUI)
- if (evt.isPopupTrigger())
- {
- popupMenu.show(evt.getComponent(), evt.getX(), evt.getY());
- }
- }
-
- // Empty implementations of unused windows events
- public void windowOpened(WindowEvent e){}
- public void windowClosing(WindowEvent e){}
- public void windowIconified(WindowEvent e){}
- public void windowDeiconified(WindowEvent e){}
- public void windowActivated(WindowEvent e){}
- public void windowDeactivated(WindowEvent e){}
-
- // Empty implementation of unused mouse events
- public void mouseClicked(MouseEvent e) {}
- public void mouseEntered(MouseEvent e) {}
- public void mouseExited(MouseEvent e) {}
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/gui/APopupHelper.java b/graphics/AtlantisJava/src/atlantis/gui/APopupHelper.java
deleted file mode 100644
index ef1dd510ce0..00000000000
--- a/graphics/AtlantisJava/src/atlantis/gui/APopupHelper.java
+++ /dev/null
@@ -1,48 +0,0 @@
-/*
- * APopupHelper.java
- *
- * Created on 24 October 2007, 09:12
- *
- * @author Adam Davison
- */
-
-package atlantis.gui;
-
-import javax.swing.JPopupMenu;
-import javax.swing.JMenuItem;
-import java.awt.Point;
-import java.awt.Component;
-
-/**
- *
- * @author Adam Davison
- */
-
-public class APopupHelper {
-
- public static void showPopupMenu(Point p, Component window, JMenuItem[] items) {
- JPopupMenu pop = getPopupMenu(items);
-
- if (pop == null) {
- return;
- }
-
- pop.show(window, (int)p.getX(), (int)p.getY());
- }
-
- public static JPopupMenu getPopupMenu(JMenuItem[] items) {
-
- if (items == null) {
- return null;
- }
-
- JPopupMenu jp = new JPopupMenu();
-
- for (int i = 0; i < items.length; i++) {
- jp.add(items[i]);
- }
-
- return jp;
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/gui/APreferencesControl.java b/graphics/AtlantisJava/src/atlantis/gui/APreferencesControl.java
deleted file mode 100755
index f329c437e38..00000000000
--- a/graphics/AtlantisJava/src/atlantis/gui/APreferencesControl.java
+++ /dev/null
@@ -1,429 +0,0 @@
-package atlantis.gui;
-
-import java.io.File;
-import java.awt.Frame;
-import java.awt.event.ItemEvent;
-import java.awt.event.ItemListener;
-import java.awt.event.ActionEvent;
-import java.awt.event.ActionListener;
-import java.awt.event.WindowAdapter;
-import java.awt.event.WindowEvent;
-
-import javax.swing.JCheckBoxMenuItem;
-import javax.swing.JMenu;
-import javax.swing.JOptionPane;
-import javax.swing.JSeparator;
-
-import atlantis.canvas.ACanvas;
-import atlantis.canvas.ALegendWindow;
-import atlantis.globals.AGlobals;
-import atlantis.graphics.colormap.AColorMap;
-import atlantis.parameters.APar;
-import atlantis.utils.AAtlantisException;
-import atlantis.utils.ALogger;
-
-
-/**
- * Preferences menu item
- *
- * @author Gary Taylor, Zdenek Maxa
- */
-public class APreferencesControl extends JMenu implements ActionListener, ItemListener
-{
- private static ALogger logger = ALogger.getLogger(APreferencesControl.class);
-
- private static AGlobals globals = AGlobals.instance();
-
- protected static APar parameterStore = APar.instance();
-
- private static final String LAYOUT = "Change Canvas Layout";
- private static final String SELECT_COLOR_MAP = "Select Color Map";
- private static final String COLOR_MAP_EDITOR = "Color Map Editor";
- private static final String READ_COLOR_MAP = "Read Color Map";
- private static final String WRITE_COLOR_MAP = "Save Current Color Map";
- private static final String WRITE_CONFIG = "Save Current Configuration";
- private static final String POINTER_POSITION = "Show Pointer Position Window";
- private static final String LEGEND = "Show Legend Window";
- private static final String CANVAS_TITLE = "Show Canvas Title";
- private static final String WINDOW_TITLES = "Show Window Titles";
- private static final String FISHEYE_LOGO = "Show Fisheye Indicator";
- private static final String HIDE_SCALES = "Hide Scales";
- private static final String ATLAS_LOGO = "Show ATLAS logo on saved images";
- private static final String ANTI_ALIASING = "Use Anti-Aliasing";
- private static final String OPEN_GL = "Use OpenGL";
-
- private static JCheckBoxMenuItem posMenuItem;
- private static JCheckBoxMenuItem legMenuItem;
- private static JCheckBoxMenuItem canvasTitleMenuItem;
- private static JCheckBoxMenuItem windowTitleMenuItem;
- private static JCheckBoxMenuItem fisheyeIndicatorMenuItem;
- private static JCheckBoxMenuItem hideScalesMenuItem;
- private static JCheckBoxMenuItem atlasLogoMenuItem;
- private static JCheckBoxMenuItem aliasMenuItem;
- private static JCheckBoxMenuItem openglMenuItem;
-
- // ----------------------------------------------------------------------
-
- public APreferencesControl()
- {
- super("Preferences");
- this.setToolTipText("Preferences");
-
- add(SELECT_COLOR_MAP).addActionListener(this);
- add(COLOR_MAP_EDITOR).addActionListener(this);
- add(READ_COLOR_MAP).addActionListener(this);
- add(WRITE_COLOR_MAP).addActionListener(this);
-
- add(new JSeparator());
-
- add(LAYOUT).addActionListener(this);
- add(WRITE_CONFIG).addActionListener(this);
-
- add(new JSeparator());
-
- posMenuItem = new JCheckBoxMenuItem(POINTER_POSITION, false);
- posMenuItem.addItemListener(this);
- add(posMenuItem);
-
- legMenuItem = new JCheckBoxMenuItem(LEGEND, false);
- legMenuItem.addItemListener(this);
- add(legMenuItem);
-
- add(new JSeparator());
-
- canvasTitleMenuItem = new JCheckBoxMenuItem(CANVAS_TITLE, parameterStore.get("Prefs", "CanvasTitle").getStatus());
- canvasTitleMenuItem.addItemListener(this);
- add(canvasTitleMenuItem);
-
- windowTitleMenuItem = new JCheckBoxMenuItem(WINDOW_TITLES, parameterStore.get("Prefs", "WindowTitle").getStatus());
- windowTitleMenuItem.addItemListener(this);
- add(windowTitleMenuItem);
-
- fisheyeIndicatorMenuItem = new JCheckBoxMenuItem(FISHEYE_LOGO, parameterStore.get("Prefs", "FisheyeIndicator").getStatus());
- fisheyeIndicatorMenuItem.addItemListener(this);
- add(fisheyeIndicatorMenuItem);
-
- hideScalesMenuItem = new JCheckBoxMenuItem(HIDE_SCALES, parameterStore.get("Prefs", "HideScales").getStatus());
- hideScalesMenuItem.addItemListener(this);
- add(hideScalesMenuItem);
-
- atlasLogoMenuItem = new JCheckBoxMenuItem(ATLAS_LOGO, parameterStore.get("Prefs", "AtlasLogo").getStatus());
- atlasLogoMenuItem.addItemListener(this);
- add(atlasLogoMenuItem);
-
-
- add(new JSeparator());
-
- aliasMenuItem = new JCheckBoxMenuItem(ANTI_ALIASING, parameterStore.get("Prefs", "AntiAlias").getStatus());
- aliasMenuItem.addItemListener(this);
- add(aliasMenuItem);
-
- openglMenuItem = new JCheckBoxMenuItem(OPEN_GL, parameterStore.get("Prefs", "OpenGL").getStatus());
- openglMenuItem.addItemListener(this);
-
- if (globals.getUseOpenGL()) {
- add(new JSeparator());
- add(new AOpenGLControl());
- }
- } // APreferencesControl() ----------------------------------------------
-
-
-
- public void itemStateChanged(ItemEvent e)
- {
- if(((JCheckBoxMenuItem)e.getSource()).getText().equals(CANVAS_TITLE))
- {
- if(e.getStateChange() == ItemEvent.SELECTED)
- {
- parameterStore.get("Prefs", "CanvasTitle").setStatus(true);
- ACanvas.getCanvas().getTitleBar().setVisible(true);
- }
- else
- {
- parameterStore.get("Prefs", "CanvasTitle").setStatus(false);
- ACanvas.getCanvas().getTitleBar().setVisible(false);
- }
- ACanvas.getCanvas().validate();
- ACanvas.getCanvas().repaint();
- }
- else if(((JCheckBoxMenuItem)e.getSource()).getText().equals(POINTER_POSITION))
- {
- if(e.getStateChange() == ItemEvent.SELECTED)
- APointerPositionWindow.getInstance().setVisible(true);
- else
- APointerPositionWindow.getInstance().dispose();
- }
- else if(((JCheckBoxMenuItem)e.getSource()).getText().equals(LEGEND))
- {
- if(e.getStateChange() == ItemEvent.SELECTED)
- {
- ALegendWindow legendWindow = ALegendWindow.getInstance();
- // Want to deselect legend menu item if legend window is closed
- legendWindow.addWindowListener(new WindowAdapter() {
- @Override
- public void windowClosed(WindowEvent e) {
- setLegMenuItem(false);
- }
- });
-
- legendWindow.setVisible(true);
- ACanvas.getCanvas().getCurrentWindow().repaintFromScratch();
- }
- else
- ALegendWindow.getInstance().dispose();
- }
- else if(((JCheckBoxMenuItem)e.getSource()).getText().equals(WINDOW_TITLES))
- {
- if(e.getStateChange() == ItemEvent.SELECTED)
- parameterStore.get("Prefs", "WindowTitle").setStatus(true);
- else
- parameterStore.get("Prefs", "WindowTitle").setStatus(false);
- ACanvas.getCanvas().repaintAllFromScratch();
- }
- else if(((JCheckBoxMenuItem)e.getSource()).getText().equals(FISHEYE_LOGO))
- {
- if(e.getStateChange() == ItemEvent.SELECTED)
- parameterStore.get("Prefs", "FisheyeIndicator").setStatus(true);
- else
- parameterStore.get("Prefs", "FisheyeIndicator").setStatus(false);
- ACanvas.getCanvas().repaintAllFromScratch();
- }
- else if(((JCheckBoxMenuItem)e.getSource()).getText().equals(HIDE_SCALES))
- {
- if(e.getStateChange() == ItemEvent.SELECTED)
- parameterStore.get("Prefs", "HideScales").setStatus(true);
- else
- parameterStore.get("Prefs", "HideScales").setStatus(false);
-
- ACanvas.getCanvas().repaintAllFromScratch();
- }
- else if(((JCheckBoxMenuItem)e.getSource()).getText().equals(ATLAS_LOGO))
- {
- if(e.getStateChange() == ItemEvent.SELECTED)
- parameterStore.get("Prefs", "AtlasLogo").setStatus(true);
- else
- parameterStore.get("Prefs", "AtlasLogo").setStatus(false);
- }
- else if(((JCheckBoxMenuItem)e.getSource()).getText().equals(ANTI_ALIASING))
- {
- if(e.getStateChange() == ItemEvent.SELECTED)
- parameterStore.get("Prefs", "AntiAlias").setStatus(true);
- else
- parameterStore.get("Prefs", "AntiAlias").setStatus(false);
- ACanvas.getCanvas().repaintAllFromScratch();
- }
- else if(((JCheckBoxMenuItem)e.getSource()).getText().equals(OPEN_GL))
- {
- if(e.getStateChange() == ItemEvent.SELECTED)
- parameterStore.get("Prefs", "OpenGL").setStatus(true);
- else
- parameterStore.get("Prefs", "OpenGL").setStatus(false);
- System.out.println("No effect at present");
- }
- } // itemStateChanged() -------------------------------------------------
-
-
-
- public void actionPerformed(ActionEvent e)
- {
- String action = e.getActionCommand();
-
- if(LAYOUT.equals(action))
- {
- new ALayoutDialog();
- }
- else if(SELECT_COLOR_MAP.equals(action))
- {
- new AColorMapDialog();
- }
- else if(COLOR_MAP_EDITOR.equals(action))
- {
- AColorMapEditor.getInstance().setVisible(true);
- }
- else if(READ_COLOR_MAP.equals(action))
- {
- new AReadColorMapChooser().showMyDialog();
- }
- else if(WRITE_COLOR_MAP.equals(action))
- {
- writeColorMap();
- }
- else if(WRITE_CONFIG.equals(action))
- {
- writeConfiguration();
- }
-
- } // actionPerformed() --------------------------------------------------
-
-
-
- private static void writeColorMap()
- {
- String fileName = ".Atlantis-colormap.xml";
- String title = "Saving current color map";
- Frame gui = globals.getGuiFrame();
-
- logger.debug("Going to write customised color map file ...");
- String data = AColorMap.getColorMapXML();
-
- // color map data should be ready and valid - store it into file
- try
- {
- AGUIUtilities.chooseFileAndWrite(gui, System.getProperty("user.home"),
- fileName, data.getBytes(), title, "xml");
- logger.debug("Current color map written (or cancelled by user).");
- }
- catch(AAtlantisException ex)
- {
- JOptionPane.showMessageDialog(gui, ex.getMessage(),
- title, JOptionPane.ERROR_MESSAGE);
- logger.debug(ex.getMessage(), ex);
- }
-
- } // writeColorMap() ----------------------------------------------------
-
-
-
- private static void writeConfiguration()
- {
- String FILE_SEPAR = System.getProperty("file.separator");
- String fileName = globals.getUserConfigFile();
- String title = "Saving current configuration";
- String fileNameFull = System.getProperty("user.home") + FILE_SEPAR + fileName;
- String sourceFileNameFull = "";
- Frame gui = globals.getGuiFrame();
-
- logger.debug("Writing customised configuration ...");
-
- // get currently used configuration file and data from it
- File user = new File(fileNameFull);
- if(user.canRead())
- {
- sourceFileNameFull = fileNameFull;
- logger.debug("User has already got " + fileNameFull +
- " this will be used as source.");
- }
- else
- {
- sourceFileNameFull = globals.getHomeDirectory() +
- "configuration" + FILE_SEPAR +
- "config.xml";
- logger.debug(sourceFileNameFull + " will be used as source.");
-
- }
-
- String data = AConfigWriter.getConfiguration(sourceFileNameFull);
- if(data == null)
- {
- String msg = "Error when reading source configuration from file\n" +
- sourceFileNameFull;
- logger.error(msg);
- JOptionPane.showMessageDialog(gui, msg, title,
- JOptionPane.INFORMATION_MESSAGE);
- return;
- }
-
- // configuration data should be ready and valid - store it into file
- try
- {
- logger.debug("Current customised configuration made, going to save it ...");
- AGUIUtilities.chooseFileAndWrite(gui, System.getProperty("user.home"),
- fileName, data.getBytes(), title, "xml");
- logger.debug("Saving customised configuration successful (or cancelled by user).");
- }
- catch(AAtlantisException ex)
- {
- String m = ex.getMessage();
- JOptionPane.showMessageDialog(gui, m, title,
- JOptionPane.ERROR_MESSAGE);
- logger.error(m);
- logger.debug(m, ex);
- }
-
- } // writeConfiguration() -----------------------------------------------
-
- public static void setPosMenuItem(boolean selected)
- {
- posMenuItem.setSelected(selected);
- }
-
- public static void setLegMenuItem(boolean selected)
- {
- legMenuItem.setSelected(selected);
- }
-
- public static void setWindowTitleMenuItem(boolean selected)
- {
- windowTitleMenuItem.setSelected(selected);
- parameterStore.get("Prefs", "WindowTitle").setStatus(selected);
- }
-
- public static void setFisheyeIndicatorMenuItem(boolean selected)
- {
- fisheyeIndicatorMenuItem.setSelected(selected);
- parameterStore.get("Prefs", "FisheyeIndicator").setStatus(selected);
- }
-
- public static void setHideScalesMenuItem(boolean selected)
- {
- hideScalesMenuItem.setSelected(selected);
- parameterStore.get("Prefs", "HideScales").setStatus(selected);
- }
-
- public static void setAtlasLogoMenuItem(boolean selected)
- {
- atlasLogoMenuItem.setSelected(selected);
- parameterStore.get("Prefs", "AtlasLogo").setStatus(selected);
- }
-
- public static void setAliasMenuItem(boolean selected)
- {
- if (!AGlobals.isAtlantisHeadless()) {
- aliasMenuItem.setSelected(selected);
- }
- parameterStore.get("Prefs", "AntiAlias").setStatus(selected);
- }
-
- public static boolean getWindowTitleMenuItem()
- {
- if(windowTitleMenuItem!=null)
- return windowTitleMenuItem.isSelected();
- else
- return parameterStore.get("Prefs", "WindowTitle").getStatus();
- }
-
- public static boolean getFisheyeIndicatorMenuItem()
- {
- if(fisheyeIndicatorMenuItem!=null)
- return fisheyeIndicatorMenuItem.isSelected();
- else
- return parameterStore.get("Prefs", "FisheyeIndicator").getStatus();
- }
-
- public static boolean getHideScalesMenuItem()
- {
- if(hideScalesMenuItem!=null)
- return hideScalesMenuItem.isSelected();
- else
- return parameterStore.get("Prefs", "HideScales").getStatus();
- }
-
-
- public static boolean getAtlasLogoMenuItem()
- {
- if(atlasLogoMenuItem!=null)
- return atlasLogoMenuItem.isSelected();
- else
- return parameterStore.get("Prefs", "AtlasLogo").getStatus();
- }
-
- public static boolean getAliasMenuItem()
- {
- return parameterStore.get("Prefs", "AntiAlias").getStatus();
- /*if(aliasMenuItem!=null)
- return aliasMenuItem.isSelected();
- else
- return false;*/
- }
-
-} // class APreferencesControl ==============================================
diff --git a/graphics/AtlantisJava/src/atlantis/gui/AReadColorMapChooser.java b/graphics/AtlantisJava/src/atlantis/gui/AReadColorMapChooser.java
deleted file mode 100755
index 303935d5c1e..00000000000
--- a/graphics/AtlantisJava/src/atlantis/gui/AReadColorMapChooser.java
+++ /dev/null
@@ -1,35 +0,0 @@
-package atlantis.gui;
-
-import java.io.File;
-
-import atlantis.canvas.ACanvas;
-import atlantis.globals.AGlobals;
-import atlantis.graphics.colormap.AColorMap;
-
-/**
- * The dialog which appears when a user asks to read a new colormap
- */
-public class AReadColorMapChooser extends AXMLFileChooser
-{
- private static final String FILE_SEPAR = System.getProperty("file.separator");
- private static final AGlobals globals = AGlobals.instance();
-
- public AReadColorMapChooser()
- {
- super(System.getProperty("user.dir") + FILE_SEPAR
- + "configuration" + FILE_SEPAR + "colormap.xml", globals.getGuiFrame());
- }
-
- public boolean processSelectedFile(File file)
- {
- if (file.canRead())
- {
- AColorMap.readColorMap(file.getPath());
- AColorMapEditor.getInstance().updateColors();
- AGUI.getGUI().repaintTable();
- ACanvas.getCanvas().repaintAllFromScratch();
- return true;
- }
- return false;
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/gui/AReadFileChooser.java b/graphics/AtlantisJava/src/atlantis/gui/AReadFileChooser.java
deleted file mode 100755
index 48ff7472657..00000000000
--- a/graphics/AtlantisJava/src/atlantis/gui/AReadFileChooser.java
+++ /dev/null
@@ -1,103 +0,0 @@
-package atlantis.gui;
-
-import java.io.File;
-
-import javax.swing.JFileChooser;
-import javax.swing.filechooser.FileFilter;
-import javax.swing.JCheckBox;
-import javax.swing.JPanel;
-
-import java.awt.Component;
-import java.awt.BorderLayout;
-
-import atlantis.config.ADefaultValues;
-
-/**
- * This dialog appears when a user asks to read events from a file
- * @author sboeser
- */
-public class AReadFileChooser extends JFileChooser {
- //Check box indicating to set the new default location
- private JCheckBox defaultLoc = null;
-
- /**
- * Constructor with a default path
- * @param path the default path
- */
- public AReadFileChooser(String path) {
-
- //Create a file chooser pointing to path
- //Use users default dir if null
- super(path);
-
- //Create a new panel with the checkbox
- JPanel p = new JPanel();
- defaultLoc = new JCheckBox("default location");
- p.setLayout(new BorderLayout());
- p.add(defaultLoc, BorderLayout.SOUTH);
- setAccessory(p);
-
-
- setFileFilter(new XMLFilter());
- }
-
- /**
- * Show the dialog waiting for user input
- */
- @Override
- public int showOpenDialog(Component parent) {
-
- //Get the return state
- int state = super.showOpenDialog(parent);
-
- //Store the default location if user pressed ok
- if (state == APPROVE_OPTION) {
- //Only if checkbox is ticked
- if (defaultLoc.isSelected()) {
- // save last visited location
- ADefaultValues.set("LastEventFilesSourceDir",
- getSelectedFile().getParent() + System.getProperty("file.separator"));
- }
- }
-
- //return the result state
- return state;
- }
-
- /**
- * A filter for XML files
- */
- private static class XMLFilter extends FileFilter {
-
- /**
- * Acceptance algorithm for xml files and directories
- * @param file the file to test
- * @return true if accepted
- */
- public boolean accept(File file) {
-
- //accept all directories
- if (file.isDirectory()) return true;
-
- //check the file ending
- String name = file.getName().toLowerCase();
-
- if (name.endsWith(".xml")) return true;
- if (name.endsWith(".zip")) return true;
- if (name.endsWith(".gzip")) return true;
- if (name.endsWith(".gz")) return true;
-
- //None of the requested criteria matched
- return false;
- }
-
- /**
- * Gives a description of the files that are accepted by this filter
- * @return string with list of file endings
- */
- public String getDescription() {
- return ".xml, .zip, .gzip, .gz";
- }
- }
-}
-
diff --git a/graphics/AtlantisJava/src/atlantis/gui/AReadGeometryChooser.java b/graphics/AtlantisJava/src/atlantis/gui/AReadGeometryChooser.java
deleted file mode 100755
index ae77061aeea..00000000000
--- a/graphics/AtlantisJava/src/atlantis/gui/AReadGeometryChooser.java
+++ /dev/null
@@ -1,79 +0,0 @@
-package atlantis.gui;
-
-import atlantis.geometry.AEndcapTRTDetector;
-
-import java.awt.Frame;
-import java.io.File;
-import javax.swing.JOptionPane;
-
-import atlantis.canvas.ACanvas;
-import atlantis.data.ACalorimeterData;
-import atlantis.geometry.AAtlasDetector;
-import atlantis.geometry.ABarrelSiliconDetector;
-import atlantis.geometry.ABarrelTRTDetector;
-import atlantis.geometry.ACalorimeterDetector;
-import atlantis.geometry.AEndcapSiliconDetector;
-import atlantis.globals.AGlobals;
-
-
-/**
- * The dialog which appears when a user asks to read in geometry XML file
- */
-public class AReadGeometryChooser extends AXMLGeometryChooser {
-
- private static final AGlobals globals = AGlobals.instance();
-
- public AReadGeometryChooser() {
- super();
- }
-
- public void fileChosen(int state) {
- Frame gui = globals.getGuiFrame();
- do {
- if(state==APPROVE_OPTION) {
- File file=getSelectedFile();
-
- if(file!=null)
- if(file.canRead()) {
- processSelectedFile(file);
- break;
- } else {
- JOptionPane.showMessageDialog(gui,
- "Unable to open " + file, "IO Error", JOptionPane.ERROR_MESSAGE);
- }
- } else
- break;
- state=showOpenDialog(gui);
- } while(true);
- }
-
- public boolean processSelectedFile(File file)
- {
- if(file.canRead())
- {
- // ACalorimterDetector keeps a list of its instances, clear this list.
- ACalorimeterDetector.clear();
- ABarrelSiliconDetector.clear();
- AEndcapSiliconDetector.clear();
- ABarrelTRTDetector.clear();
- AEndcapTRTDetector.clear();
-
- String muonname = file.getParent() + System.getProperty("file.separator") +
- file.getName().substring(0, 1) + "Muon" +
- file.getName().substring(1);
- File mufile = new File(muonname);
- if(mufile.canRead())
- {
- AAtlasDetector.setDetector(new AAtlasDetector(file.getAbsolutePath(), muonname));
- }
- else
- {
- AAtlasDetector.setDetector(new AAtlasDetector(file.getAbsolutePath()));
- }
- ACalorimeterData.remakeHitToGeometryMapping();
- ACanvas.getCanvas().repaintAllFromScratch();
- return true;
- }
- return false;
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/gui/ASaveCanvasDialog.java b/graphics/AtlantisJava/src/atlantis/gui/ASaveCanvasDialog.java
deleted file mode 100755
index 2f0d67a3982..00000000000
--- a/graphics/AtlantisJava/src/atlantis/gui/ASaveCanvasDialog.java
+++ /dev/null
@@ -1,477 +0,0 @@
-package atlantis.gui;
-
-import java.awt.Frame;
-import java.awt.GridLayout;
-import java.awt.event.ActionEvent;
-import java.awt.event.ActionListener;
-import java.awt.image.RasterFormatException;
-import java.beans.PropertyChangeEvent;
-import java.beans.PropertyChangeListener;
-import java.io.BufferedOutputStream;
-import java.io.File;
-import java.io.FileOutputStream;
-import java.io.OutputStream;
-
-import javax.swing.BorderFactory;
-import javax.swing.ButtonGroup;
-import javax.swing.JFileChooser;
-import javax.swing.JOptionPane;
-import javax.swing.JPanel;
-import javax.swing.JRadioButton;
-import javax.swing.filechooser.FileFilter;
-
-import atlantis.event.AEvent;
-import atlantis.event.AEventManager;
-import atlantis.canvas.ACanvas;
-import atlantis.utils.AAtlantisException;
-import atlantis.utils.AUtilities;
-import atlantis.config.ADefaultValues;
-import atlantis.globals.AGlobals;
-import atlantis.graphics.encoders.AImageEncoder;
-import atlantis.utils.ALogger;
-
-
-/**
- * Dialog window for saving a picture of the current canvas. This dialog allows
- * the user to pick the resolution and file type.
- *
- * @author Eric Jansen
- * @author Sebastian Boeser
- */
-public class ASaveCanvasDialog extends JFileChooser
- implements PropertyChangeListener {
-
- private final ALogger logger = ALogger.getLogger(ASaveCanvasDialog.class);
- private static AEventManager eventManager = AEventManager.instance();
- private static final AGlobals globals = AGlobals.instance();
-
- // GUI component that contains the resolution selection panel.
- private AResolutionChooser resolutionChooser;
-
- // Possible image widths shown to user. Heights are fixed by layout restrictions.
- private final int[] IMAGE_WIDTHS = {800, 1024, 2400, 5000};//{512, 800, 1024, 2400};
-
- // Default selected image width. Also the (fixed) width of the EPS images.
- private final int DEFAULT_IMAGE_WIDTH = 1;
-
- // String holding the default file name, need to be reset after change of file type.
- private String defaultFileName = null;
-
- // Private image encoder instance
- private final AImageEncoder imageEncoder = new AImageEncoder();
-
-
- /**
- * Constructor creating the dialog
- */
- public ASaveCanvasDialog()
- {
- //Initialize the file chooser dialog
- super(ADefaultValues.get("LastCanvasPlotSaveDir"));
- setDialogTitle("Save Canvas");
-
- //Add file filters
- addChoosableFileFilter(new AFileFilter("eps", "Encapsulated Postscript (*.eps)"));
- addChoosableFileFilter(new AFileFilter("png", "Portable Network Graphics (*.png)"));
- addChoosableFileFilter(new AFileFilter("svg", "Scalable Vector Graphics (*.svg)"));
-
- //Set default values
- setAcceptAllFileFilterUsed(false);
- // In OpenJDK JRE filter is set to null by setAcceptAllFileFilterUsed, so
- // have to set it to something:
- setFileFilter(getChoosableFileFilters()[1]);
-
- //Add the resoluton chooser
- resolutionChooser = new AResolutionChooser();
- setAccessory(resolutionChooser);
- addPropertyChangeListener(this);
-
- //Set a default file name and extension
- defaultFileName = makeEventFileName() + "-" + AUtilities.getDateTimeString();
- String ext = ((AFileFilter) getFileFilter()).getExtension();
- setSelectedFile(new File(defaultFileName + "." + ext));
- }
-
- /**
- * Pops up the "Save Canvas" dialog.
- */
- public void showDialog(){
- //Show dialog with GUI as parent
- showSaveDialog(globals.getGuiFrame());
- }
-
-
- /**
- * @return the defualt file name
- */
- public String getDefaultFileName()
- {
- return defaultFileName;
- }
-
- /**
- * Get the currently selected image width.
- * @return selected image width
- */
- public int getImageWidth()
- {
- return resolutionChooser.getImageWidth();
- }
-
-
-
- /**
- * Gets the image height on this button.
- * @return image height
- */
- public int getImageHeight()
- {
- return resolutionChooser.getImageHeight();
- }
-
-
-
- /**
- * Called when the user has selected a file and pushes the save button.
- * This function will only
- * approve the selection when the actual saving was successful.
- */
- @Override
- public void approveSelection()
- {
- Frame gui = globals.getGuiFrame();
- File file = new File(getSelectedFile().getAbsolutePath());
-
- // If the file exists and the user does not want to overwrite it, cancel the save operation.
- // The dialog is still on screen and the user can pick another file.
- if (file.exists() && JOptionPane.showConfirmDialog(gui, "File exists, overwrite?",
- "File exists", JOptionPane.YES_NO_OPTION) != JOptionPane.YES_OPTION)
- return;
-
- // All exceptions are handled equally: the user is sent back to the save canvas dialog.
- try {
- String type = ((AFileFilter)getFileFilter()).getExtension();
- // Since EPS files can be pretty big, they're saved directly
- if (type.equals("eps")){
- // Since vector images are scalable, the image size only determines the relative size of
- // the data objects. To make the generated EPS independent of the canvas size, we always
- // rescale the image to the default size.
- int width = IMAGE_WIDTHS[DEFAULT_IMAGE_WIDTH];
- int height = ACanvas.getCanvas().getRespectiveHeight(width);
- imageEncoder.saveEPS(width,height,file);
- } else if (type.equals("png")) {
- // Generate the canvas image in memory
- byte[] data;
- int width = resolutionChooser.getImageWidth();
- int height = resolutionChooser.getImageHeight();
- data = imageEncoder.getPNGData(width,height);
- // And finally write the image to the selected file.
- OutputStream stream = new BufferedOutputStream(new FileOutputStream(file.getAbsolutePath()));
- stream.write(data);
- stream.close();
- } else if (type.equals("svg")){
- // Since vector images are scalable, the image size only determines the relative size of
- // the data objects. To make the generated EPS independent of the canvas size, we always
- // rescale the image to the default size.
- int width = IMAGE_WIDTHS[DEFAULT_IMAGE_WIDTH];
- int height = ACanvas.getCanvas().getRespectiveHeight(width);
- imageEncoder.saveSVG(width,height,file);
- } else{
- //Throw an exception if none of the above
- throw new AAtlantisException("Unknown image type: '" + type + "'");
- }
- }
- catch(RasterFormatException e)
- {
- JOptionPane.showMessageDialog(gui,
- "The chosen resolution for canvas is too high, try a lower option!",
- "Error saving canvas", JOptionPane.INFORMATION_MESSAGE);
- AGUI.getGUI().restoreDefaults();
- this.cancelSelection();
- } catch(Exception e)
- {
- // Show a dialog with the error message.
- JOptionPane.showMessageDialog(AGUI.getGUI(), e.getMessage(),
- "Error saving canvas", JOptionPane.ERROR_MESSAGE);
-
- // The selection is not approved, the user has to select another file or type.
- return;
- }
-
- // This approves the selection and ends the saving processs.
- super.approveSelection();
- ADefaultValues.set("LastCanvasPlotSaveDir", file.getParent() +
- System.getProperty("file.separator"));
-
- }
-
-
-
- /**
- * Property change listener for the JFileChooser
- * @param e property change event sent by JFileChooser
- */
- public void propertyChange(PropertyChangeEvent e)
- {
- if (e.getPropertyName().equals(JFileChooser.FILE_FILTER_CHANGED_PROPERTY))
- {
- String oldExt = ((AFileFilter)e.getOldValue()).getExtension();
- String newExt = ((AFileFilter)e.getNewValue()).getExtension();
-
- if ((oldExt.equals("eps") || oldExt.equals("svg")) && !(newExt.equals("eps") || newExt.equals("svg")))
- {
- for (int i=0; i<resolutionChooser.getComponentCount(); i++)
- {
- resolutionChooser.getComponent(i).setEnabled(true);
- }
- }
- else if (!(oldExt.equals("eps") || oldExt.equals("svg")) && ((newExt.equals("eps")) || newExt.equals("svg")))
- {
- for (int i=0; i<resolutionChooser.getComponentCount(); i++)
- resolutionChooser.getComponent(i).setEnabled(false);
- }
-
- // The behaviour of the JFileChooser is somewhat strange. Regardless of what the user has entered,
- // the input text field will be emptied when the user selects another file type. It is impossible
- // to retrieve the text that was in this field, so we just reset the default file name.
- if (getSelectedFile() == null)
- {
- // Reset our default with the new extension
- setSelectedFile(new File(defaultFileName + "." + newExt));
- updateUI();
- rescanCurrentDirectory();
- }
- }
- }
-
-
-
- /**
- * Generates a file name based on the current event name and the visible projections.
- * @return auto generated image file name
- */
- private static String makeEventFileName()
- {
- String name = "Untitled";
- AEvent ev = eventManager.getCurrentEvent();
- if(ev != null)
- {
- name = ev.getSourceName();
- if(name.toLowerCase().endsWith(".xml"))
- {
- // current event comes from XML file, run and event number
- // are probably already part of the current filename
- name = name.substring(0, name.length() - 4);
- }
- else
- {
- // current event was probably retrieved online, add run and
- // event numbers into the file name of the canvas plot
- if(! ("n/a".equals(ev.getRunNumber()) &&
- "n/a".equals(ev.getEventNumber())))
- {
- name += "_" + ev.getRunNumber() + "_" + ev.getEventNumber();
- }
- }
- }
-
- ACanvas canvas = ACanvas.getCanvas();
- String[] windows = canvas.getCurrentLayout().getWindowNames();
- StringBuilder listWindows = new StringBuilder();
- for(int i = 0; i < windows.length; i++)
- {
- if(canvas.isReallyOnScreen(canvas.getWindow(windows[i])))
- {
- listWindows.append("-" + canvas.getWindow(windows[i]).getProjection().getName());
- }
- }
- name += listWindows.toString();
-
- return name;
- }
-
-
-
- /**
- * GUI component for the resolution selection panel.
- */
- class AResolutionChooser extends JPanel implements ActionListener
- {
- /** Currently selected button. */
- private AResolutionButton selectedButton;
-
- /**
- * Constructor.
- */
- public AResolutionChooser()
- {
- super(new GridLayout(IMAGE_WIDTHS.length+1, 1));
- setBorder(BorderFactory.createTitledBorder(" Resolution: "));
-
- ButtonGroup group = new ButtonGroup();
- for (int i=0; i<IMAGE_WIDTHS.length; i++)
- {
- int width = IMAGE_WIDTHS[i];
- int height = ACanvas.getCanvas().getRespectiveHeight(IMAGE_WIDTHS[i]);
-
- AResolutionButton button = new AResolutionButton(width, height);
- button.addActionListener(this);
- if(i == DEFAULT_IMAGE_WIDTH)
- {
- selectedButton = button;
- button.setSelected(true);
- }
- group.add(button);
- add(button);
- }
- }
-
- /**
- * Get the currently selected image width.
- * @return selected image width
- */
- public int getImageWidth()
- {
- return selectedButton.getImageWidth();
- }
-
- /**
- * Gets the currently selected image height.
- * @return selected image height
- */
- public int getImageHeight()
- {
- return selectedButton.getImageHeight();
- }
-
- public void updateResolutions()
- {
- for (int i=0; i<getComponentCount(); i++)
- {
- if (getComponent(i) instanceof AResolutionButton)
- {
- AResolutionButton button = (AResolutionButton)getComponent(i);
- int height = ACanvas.getCanvas().getRespectiveHeight(button.getImageWidth());
- button.setImageHeight(height);
- }
- }
- }
-
-
-
- /**
- * Action listener for the resolution panel.
- * @param e performed action
- */
- public void actionPerformed(ActionEvent e)
- {
- selectedButton = (AResolutionButton)e.getSource();
- }
-
- /**
- * Radio button for the resolution chooser.
- */
- public class AResolutionButton extends JRadioButton
- {
- /** Image width for this button. */
- int imageWidth;
- /** Image height for this button. */
- int imageHeight;
-
- /**
- * Constructor.
- * @param targetWidth image width this button corresponds to
- * @param targetHeight image height this button corresponds to
- */
- public AResolutionButton(int imageWidth, int imageHeight)
- {
- super(imageWidth + "x" + imageHeight);
- this.imageWidth = imageWidth;
- this.imageHeight = imageHeight;
- }
-
- /**
- * Gets the image width on this button.
- * @return image width
- */
- public int getImageWidth()
- {
- return imageWidth;
- }
-
- /**
- * Gets the image height on this button.
- * @return image height
- */
- public int getImageHeight()
- {
- return imageHeight;
- }
-
- public void setImageHeight(int imageHeight)
- {
- this.imageHeight = imageHeight;
- setText(imageWidth + "x" + imageHeight);
- }
- }
- }
-
- /**
- * Simple filter class that filters files by extension.
- */
- private static class AFileFilter extends FileFilter
- {
- /** File extension. */
- private String extension;
- /** Description of the file type this filter shows. */
- private String description;
-
- /**
- * Constructs a file filter.
- * @param extension file extension that passes the filter
- * @param description description of the file type this filter selects
- */
- public AFileFilter(String extension, String description)
- {
- super();
- this.extension = extension;
- this.description = description;
- }
-
- /**
- * Decides if the filter allows a file to pass or not
- * @param f file under consideration
- * @return decision of the filter
- */
- public boolean accept(File f)
- {
- //Accept all directories
- if (f.isDirectory()) return true;
-
- //Accept all files that end with given extension
- if (f.getName().toLowerCase().endsWith(extension)) return true;
-
- //Nothing else
- return false;
- }
-
- /**
- * Get the extension this filter filters on.
- * @return file extension
- */
- public String getExtension()
- {
- return extension;
- }
-
- /**
- * Get description of the filter.
- * @return description
- */
- public String getDescription()
- {
- return description;
- }
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/gui/AStartupWindow.java b/graphics/AtlantisJava/src/atlantis/gui/AStartupWindow.java
deleted file mode 100755
index 4743e6d2081..00000000000
--- a/graphics/AtlantisJava/src/atlantis/gui/AStartupWindow.java
+++ /dev/null
@@ -1,86 +0,0 @@
-package atlantis.gui;
-
-import atlantis.globals.AGlobals;
-import atlantis.graphics.AIcon;
-import atlantis.utils.ALogger;
-import atlantis.utils.AUtilities;
-import java.awt.*;
-import javax.swing.*;
-
-
-/**
- * The startup window appears when the program starts up and displays the
- * progress of the operation. No need for this to be a singleton at all.
- */
-public class AStartupWindow {
-
- //add a logger
- private final ALogger logger = ALogger.getLogger(AStartupWindow.class);
-
- //the frame showing the startup image and progress
- private final JFrame frame = (AGlobals.isAtlantisHeadless()) ? null : new JFrame();
-
- //how often we will update the progress bar
- private final int progressUpdateDiff;
-
- //GUI items that will be updated
- private JLabel text = null;
- private JProgressBar progress = null;
-
- public AStartupWindow(int numUpdates) {
-
- //Store how often we will update the progress bar
- progressUpdateDiff=(int)100./numUpdates;
-
- //Don't do anything in headless mode
- if (AGlobals.isAtlantisHeadless()) return;
-
- frame.getContentPane().setLayout(new BorderLayout());
-
- String fileName = AGlobals.instance().getHomeDirectory() + "img" +
- System.getProperty("file.separator") + "atlas.jpg";
- ImageIcon icon = AUtilities.getFileAsImageIcon(fileName);
-
- frame.getContentPane().add(new JLabel(icon), BorderLayout.CENTER);
- text = new JLabel("Welcome to Atlantis", JLabel.CENTER);
- JPanel p = new JPanel();
-
- p.setLayout(new GridLayout(2, 1));
- p.add(text);
- progress = new JProgressBar(0, 100);
- progress.setStringPainted(true);
- p.add(progress);
- frame.getContentPane().add(p, BorderLayout.SOUTH);
- Dimension screenSize = Toolkit.getDefaultToolkit().getScreenSize();
- frame.setLocation(screenSize.width / 4, screenSize.height / 3);
- frame.setUndecorated(true);
- AIcon.setIconImage(frame);
- frame.setTitle("Atlantis starting up...");
- frame.pack();
- frame.setVisible(true);
- }
-
- /**
- * Update the frame and log to the logger
- * @param newText the new text for the startup window
- */
- public void updateText(String newText) {
- //Also send this to the logger
- logger.info(newText);
-
- //Don't do graphics update in headless mode
- if (AGlobals.isAtlantisHeadless()) return;
-
- //Update text and progress bar
- text.setText(newText);
- progress.setValue(progress.getValue()+progressUpdateDiff);
- }
-
- /**
- * When dispsoing this object, also dispose of the frame
- */
- public void dispose(){
- if (frame!=null) frame.dispose();
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/gui/ATabbedPaneUI.java b/graphics/AtlantisJava/src/atlantis/gui/ATabbedPaneUI.java
deleted file mode 100755
index ea5cf518a7d..00000000000
--- a/graphics/AtlantisJava/src/atlantis/gui/ATabbedPaneUI.java
+++ /dev/null
@@ -1,35 +0,0 @@
-package atlantis.gui;
-
-import java.awt.event.MouseEvent;
-import java.awt.event.MouseListener;
-
-import javax.swing.JComponent;
-import javax.swing.plaf.ComponentUI;
-import javax.swing.plaf.metal.MetalTabbedPaneUI;
-
-import atlantis.utils.AUtilities;
-
-/**
- * Once installed on a TabbedPane this UI will allow changing the tabs only with
- * the left mouse button. By default this is possible with any button.
- * In Atlantis the right mouse button provides help
- */
-
-public class ATabbedPaneUI extends MetalTabbedPaneUI {
-
- public static ComponentUI createUI(JComponent c) {
- return new ATabbedPaneUI();
- }
-
- protected MouseListener createMouseListener() {
- return new myMouseHandler();
- }
-
- public class myMouseHandler extends MouseHandler {
- public void mousePressed(MouseEvent e) {
- if(!AUtilities.isRightMouseButton(e))
- super.mousePressed(e);
- }
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/gui/ATextField.java b/graphics/AtlantisJava/src/atlantis/gui/ATextField.java
deleted file mode 100755
index a7aae0b222b..00000000000
--- a/graphics/AtlantisJava/src/atlantis/gui/ATextField.java
+++ /dev/null
@@ -1,31 +0,0 @@
-package atlantis.gui;
-
-
-import java.awt.event.ActionListener;
-import javax.swing.JTextField;
-
-
-/**
- * This textfield will not generate an event when the setText() function is called.
- */
-
-public class ATextField extends JTextField {
- ActionListener listener;
-
- public ATextField() {
- super();
- }
-
- public void addActionListener(ActionListener l) {
- if(listener==null) {
- super.addActionListener(l);
- listener=l;
- }
- }
-
- public void setText(String t) {
- if(listener!=null) super.removeActionListener(listener);
- super.setText(t);
- if(listener!=null) super.addActionListener(listener);
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/gui/ATreeCellRenderer.java b/graphics/AtlantisJava/src/atlantis/gui/ATreeCellRenderer.java
deleted file mode 100755
index 3979507b6ff..00000000000
--- a/graphics/AtlantisJava/src/atlantis/gui/ATreeCellRenderer.java
+++ /dev/null
@@ -1,34 +0,0 @@
-package atlantis.gui;
-
-import java.awt.*;
-import javax.swing.*;
-import javax.swing.tree.*;
-import atlantis.parameters.AStatusParameter;
-import hep.wired.util.TristateCheckBox;
-
-public class ATreeCellRenderer implements TreeCellRenderer {
-
- public ATreeCellRenderer() {
- }
-
- public Component getTreeCellRendererComponent(JTree tree, Object value, boolean isSelected,
- boolean expanded, boolean leaf, int row, boolean hasFocus) {
- if(value instanceof ACheckNode){
- ACheckNode cellNode = (ACheckNode)value;
- cellNode.updateState();
- if (cellNode.getParameter() instanceof AStatusParameter){
- ACheckBox cellComponent = (ACheckBox)cellNode.getUserObject();
- cellComponent.setBorderPaintedFlat(true);
- return cellComponent;
- } else{
- TristateCheckBox cellComponent = (TristateCheckBox)cellNode.getUserObject();
- cellComponent.setState(cellNode.getState());
- cellComponent.setBorderPaintedFlat(true);
- return cellComponent;
- }
- }
-
- return new JLabel("not a checkNode");
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/gui/ATreeExpansionListener.java b/graphics/AtlantisJava/src/atlantis/gui/ATreeExpansionListener.java
deleted file mode 100755
index cb7d0b79160..00000000000
--- a/graphics/AtlantisJava/src/atlantis/gui/ATreeExpansionListener.java
+++ /dev/null
@@ -1,43 +0,0 @@
-/*
- * ATreeExpansionListener.java
- *
- * Created on 17 March 2005, 15:55
- */
-
-package atlantis.gui;
-
-import javax.swing.event.TreeExpansionListener;
-import javax.swing.event.TreeExpansionEvent;
-import javax.swing.JTree;
-
-/**
- *
- * @author Qiang
- */
-public class ATreeExpansionListener implements TreeExpansionListener {
-
- private JTree tree;
-
- private AParametersTable table;
-
- // the row number which the tree locates
- private int treeRow;
-
- /** Creates a new instance of ATreeExpansionListener */
- public ATreeExpansionListener(JTree tree, AParametersTable table, int treeRow) {
- this.tree = tree;
- this.table = table;
- this.treeRow = treeRow;
- }
-
- public void treeExpanded(TreeExpansionEvent event) {
- int newHeight = tree.getRowCount() * (int)(tree.getRowBounds(0).getHeight());
- table.setRowHeight(treeRow, newHeight);
- }
-
- public void treeCollapsed(TreeExpansionEvent event) {
- int newHeight = tree.getRowCount() * (int)(tree.getRowBounds(0).getHeight());
- table.setRowHeight(treeRow, newHeight);
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/gui/AWindowControl.java b/graphics/AtlantisJava/src/atlantis/gui/AWindowControl.java
deleted file mode 100755
index abac35788b1..00000000000
--- a/graphics/AtlantisJava/src/atlantis/gui/AWindowControl.java
+++ /dev/null
@@ -1,190 +0,0 @@
-package atlantis.gui;
-
-import atlantis.canvas.ALayoutChangeListener;
-import atlantis.canvas.ACanvas;
-import atlantis.canvas.AWindow;
-import atlantis.canvas.ALayout;
-import atlantis.graphics.layout.AFlowLayout;
-import atlantis.graphics.layout.AGridLayout;
-import atlantis.graphics.dnd.ADnDLabel;
-import atlantis.graphics.dnd.ADragListener;
-import atlantis.parameters.ACommandProcessor;
-import atlantis.utils.*;
-import java.util.*;
-import javax.swing.BorderFactory;
-import javax.swing.SwingUtilities;
-import javax.swing.JPanel;
-import java.awt.Color;
-import java.awt.Rectangle;
-import java.awt.Dimension;
-import javax.swing.event.ChangeEvent;
-import javax.swing.event.ChangeListener;
-import java.awt.event.*;
-
-/**
- * Allows user to select the current window and to
- * copy between windows.
- */
-public class AWindowControl extends JPanel
- implements ALayoutChangeListener, ADragListener {
-
- private String selectedWindowName;
- private Vector pages=new Vector(10);
-
- public AWindowControl getPanel() {
- return this;
- }
-
- public AWindowControl() {
- super();
- setLayout(new AFlowLayout(10, 10));
-
- addMouseListener(new MouseAdapter() {
- public void mousePressed(MouseEvent e) {
- if(AUtilities.isRightMouseButton(e))
- AHelpSystem.getInstance().showPage("WindowControl");
- }
- });
-
- // registering as a listener to of window lock changes
- ACanvas.getCanvas().addLockChangeListener(new ChangeListener() {
-
- public void stateChanged(ChangeEvent e) {
- for(int i=0; i<pages.size(); i++) {
- Hashtable page=(Hashtable)pages.elementAt(i);
- Enumeration labels=page.elements();
- while(labels.hasMoreElements()) {
- ADnDLabel label=(ADnDLabel)labels.nextElement();
- if(ACanvas.getCanvas().getWindow(label.getName()).isLocked())
- label.setForeground(Color.red);
- else
- label.setForeground(Color.black);
- }
- }
- }
- });
-
- // registering as a listener to APar
- ACanvas.getCanvas().addLayoutChangeListener(this);
-
- ACanvas.getCanvas().addWindowChangeListener(new ChangeListener() {
- public void stateChanged(ChangeEvent e) {
- ADnDLabel label;
-
- if(selectedWindowName!=null)
- for(int i=0; i<pages.size(); i++) {
- Hashtable page=(Hashtable)pages.elementAt(i);
-
- label=(ADnDLabel)page.get(selectedWindowName);
- if(label!=null)
- label.setBackground(new Color(207, 207, 207));
- }
-
- selectedWindowName=ACanvas.getCanvas().getCurrentWindow().getName();
- for(int i=0; i<pages.size(); i++) {
- Hashtable page=(Hashtable)pages.elementAt(i);
-
- label=(ADnDLabel)page.get(selectedWindowName);
- if(label!=null)
- label.setBackground(Color.white);
- }
- }
- });
- }
-
- // function gets called when the current layout is changed in APar
- public void layoutChanged(ACanvas c) {
- removeAll();
- ALayout layout = c.getCurrentLayout();
- Dimension d=layout.getSize();
- WindowMouseListener windowMouseListener=new WindowMouseListener();
-
- // adding new set of pages
- pages.clear();
- String[] pageNames=layout.getPageNames();
- Hashtable pageHashtable;
-
- for(int i=0; i<pageNames.length; i++) {
- String[] wNames=layout.getPageContent(pageNames[i]);
-
- JPanel page=new JPanel(new AGridLayout(d, 15));
-
- pageHashtable=new Hashtable();
- for(int k=0; k<wNames.length; k++) {
- Rectangle constraint=layout.getWindowConstraints(wNames[k]);
- ADnDLabel w=new ADnDLabel(wNames[k], wNames, true);
-
- w.setBorder(BorderFactory.createLineBorder(new Color(150, 150, 150)));
- pageHashtable.put(wNames[k], w);
- page.add(w, constraint);
- w.addMouseListener(windowMouseListener);
- w.addDragListener(this);
- }
-
- pages.addElement(pageHashtable);
- add(page);
- setToolTipText("Current Layout - "+layout.getName());
- revalidate();
- repaint();
- }
- }
-
- public void dragPerformed(Object from, Object to, int action) {
- if((from instanceof ADnDLabel)&&(to instanceof ADnDLabel))
- ACanvas.getCanvas().copyWindowSettings(((ADnDLabel)from).getText(), ((ADnDLabel)to).getText());
- }
-
- private Hashtable findPage(String[] wNames)
- {
- for (int i = 0; i < pages.size(); i++)
- {
- int matches = 0;
- Hashtable page = (Hashtable)pages.get(i);
-
- for (int j = 0; j < wNames.length; j++)
- {
- if (page.containsKey(wNames[j]))
- matches++;
- else break;
- }
- if (matches == wNames.length)
- return page;
- }
- return null;
- }
-
- class WindowMouseListener extends MouseAdapter {
-
- public void mousePressed(MouseEvent e) {
- ADnDLabel label = (ADnDLabel) e.getSource();
-
- if (AUtilities.isRightMouseButton(e)) {
- if (AEventQueue.getKeyboardState() == KeyEvent.VK_A) {
-
- String[] pageName = label.returnPageName();
- Hashtable page = findPage(pageName);
- if(page==null)
- return;
-
- for (Enumeration labels = page.elements(); labels.hasMoreElements(); ) {
- label = (ADnDLabel) labels.nextElement();
- if (label != null)
- ACommandProcessor.receive("W" + label.getName());
- }
- }
- else {
- AWindow.getPopupMenu().show(label, e.getX(), e.getY());
- ACommandProcessor.receive("W" + label.getName());
- }
- }
- }
-
- public void mouseReleased(MouseEvent e) {
- ADnDLabel label=(ADnDLabel)e.getSource();
-
- if(SwingUtilities.isLeftMouseButton(e)) {
- ACommandProcessor.receive("W"+label.getName());
- }
- }
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/gui/AXMLFileChooser.java b/graphics/AtlantisJava/src/atlantis/gui/AXMLFileChooser.java
deleted file mode 100755
index b5c2421bfcd..00000000000
--- a/graphics/AtlantisJava/src/atlantis/gui/AXMLFileChooser.java
+++ /dev/null
@@ -1,108 +0,0 @@
-package atlantis.gui;
-
-import java.awt.Component;
-import java.io.File;
-import javax.swing.JFileChooser;
-import javax.swing.JOptionPane;
-import javax.swing.filechooser.FileFilter;
-
-
-
-/**
- * A GUI component used choose a specific XML file
- */
-public abstract class AXMLFileChooser extends JFileChooser
-{
- private Component parent = null;
-
- public abstract boolean processSelectedFile(File file);
-
-
- public AXMLFileChooser(String fileName, Component parent)
- {
- super();
- this.parent = parent;
-
- setFileFilter(new XMLFilter());
- if (fileName == null)
- {
- setCurrentDirectory(new File(System.getProperty("user.dir")));
- }
- else
- {
- File f = new File(fileName);
- if (f.isFile())
- {
- setCurrentDirectory(new File(f.getAbsolutePath()));
- setSelectedFile(f);
- }
- else
- {
- setCurrentDirectory(f);
- }
- }
-
- } // AXMLFileChooser() --------------------------------------------------
-
-
-
- public void showMyDialog()
- {
- do
- {
- int state = showOpenDialog(this.parent);
- if(state == APPROVE_OPTION)
- {
- File file = getSelectedFile();
- if(file != null)
- {
- if(processSelectedFile(file))
- {
- break;
- }
- else
- {
- JOptionPane.showMessageDialog(parent,
- "Unable to open\n" + file, "IO Error",
- JOptionPane.ERROR_MESSAGE);
- }
- }
- }
- else
- {
- break;
- }
- }
- while(true);
-
- } // showMyDialog() -----------------------------------------------------
-
-
-
- private static class XMLFilter extends FileFilter
- {
- // Accept all directories and all valid files.
- public boolean accept(File f)
- {
- if(f.isDirectory())
- {
- return true;
- }
-
- String s = f.getName();
-
- if(s.toLowerCase().endsWith(".xml") || s.toLowerCase().endsWith(".zip")
- || s.toLowerCase().endsWith(".gzip") || s.toLowerCase().endsWith(".gz"))
- return true;
-
- return false;
- }
-
-
- public String getDescription()
- {
- return ".xml, .zip, .gzip, .gz";
- }
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/gui/AXMLGeometryChooser.java b/graphics/AtlantisJava/src/atlantis/gui/AXMLGeometryChooser.java
deleted file mode 100755
index c790d8aeee8..00000000000
--- a/graphics/AtlantisJava/src/atlantis/gui/AXMLGeometryChooser.java
+++ /dev/null
@@ -1,73 +0,0 @@
-package atlantis.gui;
-
-import java.awt.Frame;
-import java.io.File;
-import javax.swing.*;
-import javax.swing.filechooser.*;
-
-import atlantis.globals.AGlobals;
-
-
-/**
- * A GUI component used choose a specific XML file
- */
-public abstract class AXMLGeometryChooser extends JFileChooser {
-
- private static final AGlobals globals = AGlobals.instance();
-
- public AXMLGeometryChooser(String fileName) {
- super();
- String FILE_SEPAR = System.getProperty("file.separator");
- Frame gui = globals.getGuiFrame();
- setFileFilter(new XMLFilter());
- setCurrentDirectory(new File(System.getProperty("user.dir")+FILE_SEPAR+
- "geometry"));
- if(fileName!=null)
- setSelectedFile(new File(System.getProperty("user.dir")+FILE_SEPAR
- +fileName));
- do {
- int state=showOpenDialog(gui);
- if(state==APPROVE_OPTION) {
- File file=getSelectedFile();
- if(file!=null)
- if(processSelectedFile(file))
- break;
- else {
- JOptionPane.showMessageDialog(gui,
- "Unable to open " + file, "IO Error", JOptionPane.ERROR_MESSAGE);
- }
- } else
- break;
- } while(true);
- }
-
-
- public AXMLGeometryChooser() {
- this(null);
- }
-
-
- public abstract boolean processSelectedFile(File file);
-
-
- private static class XMLFilter extends FileFilter {
- // Accept all directories and all XML files.
-
- public boolean accept(File f) {
- if(f.isDirectory())
- return true;
-
- String s=f.getName();
- if(s.startsWith("AMuon")) return false;
- if(s.equals("config.xml")) return false;
- if(s.equals("pdg.xml")) return false;
- if(s.toLowerCase().lastIndexOf(".xml")==s.length()-".xml".length()) return true;
- return false;
- }
-
- public String getDescription() {
- return ".xml";
- }
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/gui/package.html b/graphics/AtlantisJava/src/atlantis/gui/package.html
deleted file mode 100644
index 67b415276a2..00000000000
--- a/graphics/AtlantisJava/src/atlantis/gui/package.html
+++ /dev/null
@@ -1,8 +0,0 @@
-<html>
-<head></head>
-<body>
-<p>Maintenance of GUI components (layouts, tabbed panes, etc). The
-contents (not the structure) of the GUI is defined in config.xml.
-</p>
-</body>
-</html>
diff --git a/graphics/AtlantisJava/src/atlantis/interactions/A3DBoxGroup.java b/graphics/AtlantisJava/src/atlantis/interactions/A3DBoxGroup.java
deleted file mode 100755
index 88cb802db3d..00000000000
--- a/graphics/AtlantisJava/src/atlantis/interactions/A3DBoxGroup.java
+++ /dev/null
@@ -1,14 +0,0 @@
-package atlantis.interactions;
-
-
-public class A3DBoxGroup extends AInteractionGroup {
-
- private A3DBoxInteraction transformInteraction;
-
- public A3DBoxGroup(AInteractionsManager iManager) {
- super(AInteractionGroup.WINDOW_GROUP, iManager);
- transformInteraction=new A3DBoxInteraction();
- this.addInteraction(transformInteraction);
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/interactions/A3DBoxInteraction.java b/graphics/AtlantisJava/src/atlantis/interactions/A3DBoxInteraction.java
deleted file mode 100755
index 7d264df9cc7..00000000000
--- a/graphics/AtlantisJava/src/atlantis/interactions/A3DBoxInteraction.java
+++ /dev/null
@@ -1,202 +0,0 @@
-package atlantis.interactions;
-
-import java.awt.Color;
-import java.awt.Graphics2D;
-import java.awt.event.KeyEvent;
-import java.awt.geom.Ellipse2D;
-import java.awt.geom.Point2D;
-
-import javax.swing.JMenuItem;
-
-import atlantis.parameters.APar;
-import atlantis.parameters.AParameter;
-import atlantis.projection.AProjection;
-import atlantis.projection.AProjection3DBox;
-import atlantis.graphics.ACursorFactory;
-
-/**
- * The Zoom and Rotate interaction.
- */
-public class A3DBoxInteraction extends AInteraction implements
- ASleepMouseDragListener, AMousePressListener, AEnterExitListener
-{
- private static final int ZOOM_MODE = 0;
- private static final int HORIZONTAL_ZOOM_MODE = 1;
- private static final int VERTICAL_ZOOM_MODE = 2;
- private static final int ROTATE_MODE = 3;
-
- private int d = 10;
- private Point2D.Double p0;
- private int previousKey = KeyEvent.VK_UNDEFINED;
- private int mode;
-
- public A3DBoxInteraction()
- {
- super(1, AUTOMATIC_REPAINT, SCREEN_COORDINATES, false);
-
- // The center of the ellipse is in (0, 0) in User Space
- // dummy for now
- hr[0] = new Ellipse2D.Double(-d / 2, -d / 2, d, d);
- }
-
- public void connect(AInteractionsManager manager)
- {
- super.connect(manager);
- }
-
- public int getPressButton()
- {
- return AInteractionsManager.LEFT;
- }
-
- public int init(Point2D.Double p, int key)
- {
- keyChange(p, key);
- return -1;
- }
-
- public void pressed(Point2D.Double p, int button, int key)
- {}
-
- public int getButton()
- {
- return AInteractionsManager.LEFT;
- }
-
- public void start(Point2D.Double p, int region, int key)
- {}
-
- private void keyChange(Point2D.Double p, int key)
- {
- p0 = p;
-
- switch (key)
- {
- case KeyEvent.VK_UNDEFINED:
- mode = ZOOM_MODE;
- break;
-
- case KeyEvent.VK_H:
- mode = HORIZONTAL_ZOOM_MODE;
- break;
-
- case KeyEvent.VK_V:
- mode = VERTICAL_ZOOM_MODE;
- break;
-
- case KeyEvent.VK_R:
- mode = ROTATE_MODE;
- break;
-
- case KeyEvent.VK_Z:
- mode = ZOOM_MODE;
- break;
- }
- }
-
- public void drag(Point2D.Double p, int region, int key)
- {
- if (key != previousKey)
- {
- keyChange(p, key);
- previousKey = key;
- }
-
- double zf;
- AProjection proj = window.getProjection();
- Point2D.Double center = ((AProjection3DBox) proj).getCenter(window);
-
- switch (mode)
- {
- case ZOOM_MODE:
- zf = p0.distance(center.getX(), center.getY())
- / p.distance(center.getX(), center.getY());
- ((AProjection3DBox) proj).zoom(zf);
- p0 = p;
- window.repaintFromScratch();
- break;
- case HORIZONTAL_ZOOM_MODE:
- zf = Math.abs((p0.getX() - center.getX())
- / (p.getX() - center.getX()));
- ((AProjection3DBox) proj).zoomHorizontal(zf);
- p0 = p;
- window.repaintFromScratch();
- break;
- case VERTICAL_ZOOM_MODE:
- zf = Math.abs((p0.getY() - center.getY())
- / (p.getY() - center.getY()));
- ((AProjection3DBox) proj).zoomVertical(zf);
- p0 = p;
- window.repaintFromScratch();
- break;
- case ROTATE_MODE:
- AParameter phiPar = parameterStore.get(proj.getName(), "Phi");
- double height = window.getCurrDisp().getHeight();
- double deltaV = p.getY() - p0.getY();
- phiPar.setD(adjustPhi(phiPar.getD() + 360. * deltaV / height));
- p0 = p;
- window.repaintFromScratch();
- break;
- }
- }
-
- private double adjustPhi(double phi)
- {
- while (phi < 0)
- phi += 360;
- while (phi > 360)
- phi -= 360;
- return phi;
- }
-
- public void stop()
- {}
-
- public void cancel()
- {}
-
- public void paint(Graphics2D g)
- {
- Point2D.Double p = ((AProjection3DBox) window.getProjection()).getCenter(window);
- g.setColor(Color.red);
- g.fillOval((int) (p.x - d / 2), (int) (p.y - d / 2), d, d);
- }
-
- public void entered()
- {
-// if (region == 0)
- window.setCursor(ACursorFactory.getInstance().getDefaultCursor());
- }
-
- public void exited()
- {
- // if (region == 0)
- window.setCursor(ACursorFactory.getInstance().getDefaultCursor());
- }
-
- public int getPopupType()
- {
- return APopupListener.WINDOW_POPUP;
- }
-
- /*public void showPopup(Point p, int region)
- {
- popupMenu.show(window, p.x, p.y);
- }*/
-
- public JMenuItem[] getPopupItems() {
- return null;
- }
-
- public AModifier[] getModifiers()
- {
- return new AModifier[] {
- new AModifier(KeyEvent.VK_UNDEFINED, false, "Change the volume of the box"),
- new AModifier(KeyEvent.VK_Z, false, "Change the volume of the box"),
- new AModifier(KeyEvent.VK_H, false, "Change the length of the box"),
- new AModifier(KeyEvent.VK_V, false, "Change the height of the box"),
- new AModifier(KeyEvent.VK_R, false, "Rotate around axis of box")
- };
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/interactions/AClockGroup.java b/graphics/AtlantisJava/src/atlantis/interactions/AClockGroup.java
deleted file mode 100755
index 8bfd75d8ffe..00000000000
--- a/graphics/AtlantisJava/src/atlantis/interactions/AClockGroup.java
+++ /dev/null
@@ -1,62 +0,0 @@
-package atlantis.interactions;
-
-import atlantis.canvas.ACanvas;
-import atlantis.parameters.APar;
-import java.awt.event.ItemEvent;
-import java.awt.event.ItemListener;
-import javax.swing.JCheckBox;
-import javax.swing.JPanel;
-
-public class AClockGroup extends AInteractionGroup {
-
- private AClockInteraction clockInteraction;
- private JCheckBox checkbox;
- // the panel that will contain the additional controls for the interactions
- private JPanel additionalControls;
-
- public AClockGroup(AInteractionsManager iManager) {
- super(AInteractionGroup.WINDOW_GROUP, iManager);
-
- clockInteraction=new AClockInteraction();
- addInteraction(clockInteraction);
-
- // create the additional controls panel
- additionalControls = new JPanel();
-
- checkbox=new JCheckBox("on/off", false);
- checkbox.addItemListener(new ItemListener() {
- public void itemStateChanged(ItemEvent e) {
- switch(e.getStateChange()) {
- case ItemEvent.SELECTED:
- parameterStore.get("YX", "Clock").setStatus(true);
- break;
-
- case ItemEvent.DESELECTED:
- parameterStore.get("YX", "Clock").setStatus(false);
- break;
- }
- ACanvas.getCanvas().getCurrentWindow().repaintFromScratch();
- }
- });
- additionalControls.add(checkbox);
- }
-
- public void connect() {
- checkbox.setSelected(parameterStore.get("YX", "Clock").getStatus());
- }
-
- /**
- * this interaction group has additional controls, so return true
- */
-
- public boolean hasAdditionalControls() {
- return true;
- }
- /**
- * returns the additional controls
- */
- public JPanel getAdditionalControls() {
- return additionalControls;
- }
-
-}
\ No newline at end of file
diff --git a/graphics/AtlantisJava/src/atlantis/interactions/AClockInteraction.java b/graphics/AtlantisJava/src/atlantis/interactions/AClockInteraction.java
deleted file mode 100755
index 13a44dbe9f5..00000000000
--- a/graphics/AtlantisJava/src/atlantis/interactions/AClockInteraction.java
+++ /dev/null
@@ -1,103 +0,0 @@
-package atlantis.interactions;
-
-
-import java.awt.*;
-import java.awt.geom.*;
-
-import atlantis.graphics.*;
-import atlantis.parameters.*;
-import atlantis.projection.*;
-import atlantis.utils.*;
-
-
-public class AClockInteraction extends AInteraction
- implements ASleepMouseDragListener {
-
- private ALineSegment line;
- private double phi;
-
- public AClockInteraction() {
- super(1, WINDOW_TOTAL_REPAINT, WORLD_COORDINATES, false);
- // double phi = APar.get("YX","Phi").getD()*AMath.DEGREES_TO_RADIANS+Math.PI;
- double phi=Math.toRadians(parameterStore.get("YX", "Phi").getD());
-
- line=new ALineSegment(0, 0, 1500*Math.cos(phi), 1500*Math.sin(phi), 10);
- hr[0]=line;
- }
-
- public RectangularShape getScreenHotRegion(int region) {
- if(region==0)
- return new ALineSegment(window.calculateDisplay(line.p1), window.calculateDisplay(line.p2), 10);
- else
- return null;
- }
-
- public int init(Point2D.Double p, int key) {
- return 1;
- }
-
- public int getButton() {
- return AInteractionsManager.LEFT;
- }
-
- public void start(Point2D.Double p, int region, int key) {
- // if(parameterStore.get("YX","Clock").getStatus())
- if(region==0)
- parameterStore.get("YX", "Clock").setD(0.0000001);
- else if(region==1) {
- AProjection2D projection=(AProjection2D)window.getProjection();
- Point2D.Double p0=projection.inverseNonLinearTransform(p);
-
- this.phi=Math.atan2(p0.y, p0.x);
- }
- }
-
- public void drag(Point2D.Double p, int region, int key) {
- if(region==0) {
- double phi=Math.atan2(p.y, p.x);
-
- // phi+=Math.PI;
- if(phi<0) phi+=2*Math.PI;
- parameterStore.get("YX", "Phi").setD(Math.toDegrees(phi));
- } else if(region==1&¶meterStore.get("YX", "Clock").getStatus()) {
- double phiPrime=Math.atan2(p.y, p.x);
- double phi0=Math.toRadians(parameterStore.get("YX", "Phi").getD());
- double deltaPhiPrime=phiPrime-phi0;
-
- if(deltaPhiPrime<-Math.PI) deltaPhiPrime+=2*Math.PI;
- if(deltaPhiPrime>Math.PI) deltaPhiPrime-=2*Math.PI;
- double deltaPhi=this.phi-phi0;
-
- if(deltaPhi<-Math.PI) deltaPhi+=2*Math.PI;
- if(deltaPhi>Math.PI) deltaPhi-=2*Math.PI;
-
- if((deltaPhi>0.&&deltaPhiPrime-deltaPhi>0.)||(deltaPhi<0.&&deltaPhiPrime-deltaPhi<0.)) {
- double a=(deltaPhi*Math.PI-deltaPhiPrime*Math.abs(deltaPhi))/(deltaPhiPrime-deltaPhi);
-
- parameterStore.get("YX", "Clock").setD(Math.min(Math.max(Math.PI/a, 0.000001), 7.));
- } else {
- parameterStore.get("YX", "Clock").setD(0.000001);
- }
- }
- }
-
- public void stop() {}
-
- public void cancel() {}
-
- public void paint(Graphics2D g) {
- // double phi = parameterStore.get("YX","Phi").getD()*AMath.DEGREES_TO_RADIANS+Math.PI;
- double phi=Math.toRadians(parameterStore.get("YX", "Phi").getD());
-
- line.p2.setLocation(1500*Math.cos(phi), 1500*Math.sin(phi));
- ALineSegment screenLine=(ALineSegment)getScreenHotRegion(0);
-
- AGraphics ag=AGraphics.makeAGraphics(g);
-
- ag.updateDrawParameters(frameDrawParameters);
- ag.drawLine(screenLine.p1.x, screenLine.p1.y, screenLine.p2.x, screenLine.p2.y);
- ag.updateDrawParameters(drawParameters);
- ag.drawLine(screenLine.p1.x, screenLine.p1.y, screenLine.p2.x, screenLine.p2.y);
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/interactions/AEnterExitListener.java b/graphics/AtlantisJava/src/atlantis/interactions/AEnterExitListener.java
deleted file mode 100755
index 7bc8fdb6fb4..00000000000
--- a/graphics/AtlantisJava/src/atlantis/interactions/AEnterExitListener.java
+++ /dev/null
@@ -1,13 +0,0 @@
-package atlantis.interactions;
-
-
-/**
- * The listener is supported by AInteractionsManager,
- * it generated events when the mouse is entering or exiting a Hot Region.
- */
-public interface AEnterExitListener {
-
- void entered();
- void exited();
-}
-
diff --git a/graphics/AtlantisJava/src/atlantis/interactions/AFishEyeChangeListener.java b/graphics/AtlantisJava/src/atlantis/interactions/AFishEyeChangeListener.java
deleted file mode 100644
index 5b6c091c363..00000000000
--- a/graphics/AtlantisJava/src/atlantis/interactions/AFishEyeChangeListener.java
+++ /dev/null
@@ -1,17 +0,0 @@
-package atlantis.interactions;
-
-/**
- * Interface for all FishEyeChangeListener classes. Each time the FishEye
- * parameters are changed, all listeners are called with the new paremeters
- * @author sboeser
- */
-public interface AFishEyeChangeListener {
-
- /**
- * This method gets called each time new fisheye parameters are set
- * @param status the new fishEye status
- * @param value the new fishEye value
- */
- abstract public void fishEyeChange(boolean status, double value);
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/interactions/AFishEyeGroup.java b/graphics/AtlantisJava/src/atlantis/interactions/AFishEyeGroup.java
deleted file mode 100755
index d2784b78266..00000000000
--- a/graphics/AtlantisJava/src/atlantis/interactions/AFishEyeGroup.java
+++ /dev/null
@@ -1,116 +0,0 @@
-package atlantis.interactions;
-
-import atlantis.canvas.ACanvas;
-import java.awt.event.*;
-import javax.swing.JCheckBox;
-import javax.swing.JFormattedTextField;
-import javax.swing.JLabel;
-import javax.swing.JPanel;
-import java.awt.BorderLayout;
-import java.text.NumberFormat;
-
-public class AFishEyeGroup extends AInteractionGroup implements AFishEyeChangeListener {
-
- private final AFishEyeInteraction fishEyeInteraction;
- private final JCheckBox checkbox;
- private final JFormattedTextField valueField;
- // the panel that will contain the additional controls for the interactions
- private JPanel additionalControls;
-
-//Format, label and label string for value field
- private NumberFormat valueFormat;
- private JLabel valueLabel;
- private static String valueString = "Value: ";
-
- public AFishEyeGroup(AInteractionsManager iManager) {
- super(AInteractionGroup.WINDOW_GROUP, iManager);
-
- fishEyeInteraction=new AFishEyeInteraction();
- addInteraction(fishEyeInteraction);
-
- // create the additional controls panel
- additionalControls = new JPanel();
-
- checkbox=new JCheckBox("on/off", false);
- checkbox.addItemListener(new ItemListener() {
- public void itemStateChanged(ItemEvent e) {
- switch(e.getStateChange()) {
- case ItemEvent.SELECTED:
- fishEyeInteraction.setStatus(true);
- //fishEyeInteraction.getParameter("FishEye").setStatus(true);
- break;
-
- case ItemEvent.DESELECTED:
- fishEyeInteraction.setStatus(false);
- //fishEyeInteraction.getParameter("FishEye").setStatus(false);
- break;
- }
- ACanvas.getCanvas().getCurrentWindow().repaintFromScratch();
- }
- });
-
-//Create the label
- valueLabel = new JLabel(valueString);
- valueFormat = NumberFormat.getNumberInstance();
- valueFormat.setMaximumIntegerDigits(2);
- valueField=new JFormattedTextField(valueFormat);
- valueField.setToolTipText("Enter fish eye value between 0 and 25");
- valueField.setValue(new Double(0));
- valueField.setColumns(3);
- valueField.addActionListener(new ActionListener() {
- public void actionPerformed(ActionEvent e)
- {
- Number value =(Number)valueField.getValue();
- double dvalue = value.doubleValue();
- if(dvalue>0 && dvalue<25)
- {
- fishEyeInteraction.setValue(dvalue);
- ACanvas.getCanvas().getCurrentWindow().repaintFromScratch();
- }
- else
- {
- Double val = new Double(fishEyeInteraction.getValue());
- valueField.setValue(val);
- }
- }
- });
-
- JPanel nestedPanel = new JPanel();
- nestedPanel.add(valueLabel);
- nestedPanel.add(valueField);
-
- JPanel borderPanel = new JPanel(new BorderLayout());
- borderPanel.add(checkbox, BorderLayout.WEST);
- borderPanel.add(nestedPanel, BorderLayout.EAST);
-
- additionalControls.add(borderPanel);
-
- }
-
- public void connect() {
- super.connect();
-
- //Only after we are connected to a window, add ourselves as update listener
- fishEyeInteraction.addFishEyeChangeListener(this);
- }
-
- public void fishEyeChange(boolean status, double value) {
- valueField.setValue(value);
- checkbox.setSelected(status);
- }
-
- /**
- * FishEye has additional controls, so return true
- */
- public boolean hasAdditionalControls() {
- return true;
- }
-
- /**
- * return the additional controls
- */
- public JPanel getAdditionalControls() {
- return additionalControls;
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/interactions/AFishEyeInteraction.java b/graphics/AtlantisJava/src/atlantis/interactions/AFishEyeInteraction.java
deleted file mode 100755
index b1abf8608b4..00000000000
--- a/graphics/AtlantisJava/src/atlantis/interactions/AFishEyeInteraction.java
+++ /dev/null
@@ -1,389 +0,0 @@
-package atlantis.interactions;
-
-import atlantis.graphics.ACursorFactory;
-import atlantis.parameters.AParameter;
-import atlantis.parameters.APar;
-import atlantis.projection.*;
-import java.awt.Graphics2D;
-import java.awt.event.ActionEvent;
-import java.awt.event.KeyEvent;
-import java.awt.event.ActionListener;
-import javax.swing.JMenuItem;
-import java.awt.geom.*;
-import java.util.Vector;
-
-/**
- * The FishEye transformation will expand the central part of the display,
- * while keeping the outer borders. This helps in e.g. expanding the inner detector region.
- **/
-
-public class AFishEyeInteraction extends AInteraction
- implements ASleepMouseDragListener, ActionListener, AEnterExitListener {
-
- //A list of listeners for fishEye changes
- private Vector<AFishEyeChangeListener> fishEyeChangeListeners = new Vector<AFishEyeChangeListener>();
-
- private final int d=20;
- private final int region = 0;
- private Point2D.Double firstP;
- private JMenuItem[] popupItems;
-
- private final static String TOGGLE_FISHEYE="Fish Eye On/Off";
-
- /**
- * Create a new FishEye interaction
- */
- public AFishEyeInteraction() {
- super(1, WINDOW_TOTAL_REPAINT, WORLD_COORDINATES, false);
-
- hr[0]=new Ellipse2D.Double(0, 0, d, d);
-
- popupItems = new JMenuItem[] {
- new JMenuItem(TOGGLE_FISHEYE),
- };
-
- for (int i = 0; i < popupItems.length; i++) {
- popupItems[i].addActionListener(this);
- }
- }
-
-
- /**
- * Initialize FishEye transformation using an inital point
- */
- public int init(Point2D.Double p, int key) {
-
- AProjection2D projection=(AProjection2D)window.getProjection();
-
- firstP=new Point2D.Double(Math.abs(p.x), Math.abs(p.y));
- firstP=projection.inverseNonLinearTransform(firstP);
-
- return region;
- }
-
- /**
- * Returns the button this interaction uses
- **/
- public int getButton() {
- return AInteractionsManager.LEFT;
- }
-
- /**
- * Get projection parameters using APar
- **/
- private AParameter getParameter(String name) {
- AProjection projection=window.getProjection();
-
- if(projection instanceof AProjectionYX)
- return parameterStore.get("YX", name);
- else if(projection instanceof AProjectionRZ)
- return parameterStore.get("RZ", name);
- else if(projection instanceof AProjection3D)
- return parameterStore.get("3D", name);
- else if(projection instanceof AProjectionYZ||projection instanceof AProjectionXZ)
- return parameterStore.get("XZ", name);
- else if(projection instanceof AProjectionFR)
- return parameterStore.get("FR", name);
- else if(projection instanceof AProjectionFZ)
- return parameterStore.get("FZ", name);
- else
- throw new Error("Fish Eye should be used ONLY in YX, RZ, FZ and FR");
- }
-
- /**
- * Get new FishEye parameter if mouse has moved to p in YX projection
- **/
- private void updateYX(Point2D.Double p, int key) {
- double r1=Math.sqrt(firstP.x*firstP.x+firstP.y*firstP.y);
- double r2=Math.sqrt(p.x*p.x+p.y*p.y);
- double rTo=getParameter("rTo").getD();
-
- if(r1<rTo&&r2>rTo) return;
- if(r2<rTo&&r1>rTo) return;
-
- double newFishEyeValue=1000*(r2-r1)/(r1*rTo-r1*r2);
-
- if(newFishEyeValue<0||newFishEyeValue>25) return;
-
- setValue(newFishEyeValue);
- fireFishEyeChange(getStatus(),getValue());
- }
-
- /**
- * Get new FishEye parameter if mouse has moved to p in RZ projection
- **/
- private void updateRZ(Point2D.Double p, int key) {
- double newFishEyeValue=0;
-
- switch(key) {
- case KeyEvent.VK_UNDEFINED:
- case KeyEvent.VK_F:
- case KeyEvent.VK_H:
- double z1=firstP.x;
- double z2=Math.abs(p.x);
- double zTo=getParameter("zTo").getD();
-
- if(z1<zTo&&z2>zTo) return;
- if(z2<zTo&&z1>zTo) return;
-
- newFishEyeValue=1000*(z2-z1)/(z1*zTo-z1*z2);
- break;
-
- case KeyEvent.VK_V:
- double r1=Math.abs(firstP.y);
- double r2=Math.abs(p.y);
- double rTo=getParameter("rTo").getD();
-
- if(r1<rTo&&r2>rTo) return;
- if(r2<rTo&&r1>rTo) return;
-
- newFishEyeValue=1000*(r2-r1)/(r1*rTo-r1*r2);
- break;
- }
-
- if(newFishEyeValue<0||newFishEyeValue>25) return;
- setValue(newFishEyeValue);
- fireFishEyeChange(getStatus(),getValue());
- }
-
- /**
- * Get new FishEye parameter if mouse has moved to p in XZ projection
- **/
- private void updateXZ(Point2D.Double p, int key) {
- double newFishEyeValue=0;
-
- switch(key) {
- case KeyEvent.VK_UNDEFINED:
- case KeyEvent.VK_F:
- case KeyEvent.VK_H:
- double z1=firstP.x;
- double z2=Math.abs(p.x);
- double zTo=getParameter("zTo").getD();
-
- if(z1<zTo&&z2>zTo) return;
- if(z2<zTo&&z1>zTo) return;
-
- newFishEyeValue=1000*(z2-z1)/(z1*zTo-z1*z2);
- break;
-
- case KeyEvent.VK_V:
- double r1=Math.abs(firstP.y);
- double r2=Math.abs(p.y);
- double rTo=getParameter("yTo").getD();
-
- if(r1<rTo&&r2>rTo) return;
- if(r2<rTo&&r1>rTo) return;
-
- newFishEyeValue=1000*(r2-r1)/(r1*rTo-r1*r2);
- break;
- }
-
- if(newFishEyeValue<0||newFishEyeValue>25) return;
- setValue(newFishEyeValue);
- fireFishEyeChange(getStatus(),getValue());
- }
-
- /**
- * Get new FishEye parameter if mouse has moved to p in Phi-R projection
- **/
- private void updateFR(Point2D.Double p, int key) {
- double r1=firstP.x;
- double r2=p.x;
- double rTo=getParameter("rTo").getD();
-
- if(r1<rTo&&r2>rTo) return;
- if(r2<rTo&&r1>rTo) return;
-
- double newFishEyeValue=1000*(r2-r1)/(r1*rTo-r1*r2);
-
- if(newFishEyeValue<0||newFishEyeValue>25) return;
-
- setValue(newFishEyeValue);
- fireFishEyeChange(getStatus(),getValue());
- }
-
- /**
- * Get new FishEye parameter if mouse has moved to p in Phi-Z projection
- **/
- private void updateFZ(Point2D.Double p, int key) {
- double z1=Math.abs(firstP.x);
- double z2=Math.abs(p.x);
- double zTo=getParameter("zTo").getD();
-
- if(z1<zTo&&z2>zTo) return;
- if(z2<zTo&&z1>zTo) return;
-
- double newFishEyeValue=1000*(z2-z1)/(z1*zTo-z1*z2);
-
- if(newFishEyeValue<0||newFishEyeValue>25) return;
-
- setValue(newFishEyeValue);
- fireFishEyeChange(getStatus(),getValue());
- }
-
- /**
- * Change FishEye parameter for corresponding projection
- * if mouse is draged
- **/
- public void drag(Point2D.Double p, int region, int key) {
- if(!getParameter("FishEye").getStatus()) return;
-
- AProjection proj=window.getProjection();
-
- if(proj instanceof AProjectionYX)
- updateYX(p, key);
- else if(proj instanceof AProjectionRZ||proj instanceof AProjection3D)
- updateRZ(p, key);
- else if(proj instanceof AProjectionXZ||proj instanceof AProjectionYZ)
- updateXZ(p, key);
- else if(proj instanceof AProjectionFR)
- updateFR(p, key);
- else if(proj instanceof AProjectionFZ)
- updateFZ(p, key);
- }
-
- // Empty interface implementations
- public void stop() {}
- public void start(Point2D.Double p, int region, int key) {}
- public void cancel() {}
- public void paint(Graphics2D g) {}
-
- public int getPopupType() {
- return APopupListener.WINDOW_POPUP;
- }
-
- /*public void showPopup(Point p, int region) {
- popupMenu.show(window, p.x, p.y);
- }*/
-
- public JMenuItem[] getPopupItems() {
- return popupItems;
- }
-
-
- /**
- * Implementaiton of the ActionListener
- * @param e
- */
- public void actionPerformed(ActionEvent e) {
- String action=e.getActionCommand();
-
- if(action.equals(TOGGLE_FISHEYE)) {
- //toggle the fisheye status
- setStatus(!getStatus());
- //Update the window
- window.repaintFromScratch();
- //And the GUI
- fireFishEyeChange(getStatus(),getValue());
- }
- }
-
- /**
- * Public method so it can be called from the AFishEyeGroup to change the
- * fish eye amount to a fixed value
- * @param value the new value
- */
- public void setValue(double value){
- getParameter("FishEye").setD(value);
- }
-
- /**
- * Return FishEye value (e.g to update the FishEye panel)
- * @return the fishEye value
- */
- public double getValue(){
- return getParameter("FishEye").getD();
- }
-
- /**
- * Public method so it can be called externally from the AFishEyeGroup
- * @param status true or false
- */
- public void setStatus(boolean status) {
- getParameter("FishEye").setStatus(status);
- }
-
- /**
- * @return the current fishEye status(true or false)
- */
- public boolean getStatus() {
- return getParameter("FishEye").getStatus();
- }
-
- /**
- * Gets called each time we enter a window in which this interaction is active
- */
- public void entered(){
- //Set mouse cursor
- window.setCursor(ACursorFactory.getInstance().getFishEyeCursor());
- }
-
- /**
- * Gets called each time we leave a window in which this interaction is active
- */
- public void exited(){
- //Set mouse cursor
- window.setCursor(ACursorFactory.getInstance().getDefaultCursor());
- }
-
- /**
- * Return modifier keys for this projection
- * - F for Fast (only detectors are update)
- * - V for react only to Vertical mouse movement (only in RZ and XZ projection)
- * - H for react only to Horizontal mouse movement (only in RZ and XZ projection, default)
- **/
- public AModifier[] getModifiers(){
- if(window.getProjection() instanceof AProjectionRZ ||
- window.getProjection() instanceof AProjectionXZ) {
- return new AModifier[] {
- new AModifier(KeyEvent.VK_F, false, "Fast (data not drawn)"),
- new AModifier(KeyEvent.VK_V, false, "Vertically defined FishEye"),
- new AModifier(KeyEvent.VK_UNDEFINED, false, "Horizontally defined FishEye"),
- new AModifier(KeyEvent.VK_H, false, "Horizontally defined FishEye")
- };
- } else {
-
- return new AModifier[] {
- new AModifier(KeyEvent.VK_F, false, "Fast (data not drawn)")
- };
- }
- }
-
- /**
- * Add a new listener for FishEyeChange incidents
- * @param listener to be added to list
- */
- public void addFishEyeChangeListener(AFishEyeChangeListener listener) {
- //Add this listener
- fishEyeChangeListeners.addElement(listener);
- //And bring it up to date
- listener.fishEyeChange(getStatus(), getValue());
-
- }
-
- /**
- * Remove a listener from the liste
- * @param listener to be removed from list
- */
- public void removeFishEyeChangeListener(AFishEyeChangeListener listener) {
- //Remove this listener
- fishEyeChangeListeners.removeElement(listener);
- }
-
- /**
- * Call fishEyeChange method of all FishEyeChange listeners
- * @param status the new fisheye status
- * @param value the new fisheye value
- */
- private void fireFishEyeChange(boolean status, double value) {
-
- // Loop over all listeners
- for (AFishEyeChangeListener listener : fishEyeChangeListeners)
- {
- // give them the new status
- listener.fishEyeChange(status,value);
- }
- }
-
-}
-
diff --git a/graphics/AtlantisJava/src/atlantis/interactions/AInteraction.java b/graphics/AtlantisJava/src/atlantis/interactions/AInteraction.java
deleted file mode 100755
index 446aedc3f93..00000000000
--- a/graphics/AtlantisJava/src/atlantis/interactions/AInteraction.java
+++ /dev/null
@@ -1,323 +0,0 @@
-package atlantis.interactions;
-
-import java.awt.Graphics2D;
-import java.awt.Rectangle;
-import java.awt.geom.Point2D;
-import java.awt.geom.RectangularShape;
-import java.awt.Point;
-import javax.swing.JPopupMenu;
-import javax.swing.JMenuItem;
-
-import atlantis.canvas.AWindow;
-import atlantis.graphics.ADrawParameters;
-import atlantis.graphics.AGraphics;
-import atlantis.graphics.colormap.AColorMap;
-import atlantis.gui.APopupHelper;
-import atlantis.parameters.APar;
-import atlantis.utils.APolygon;
-
-/**
- * The abstract supperclass of all the Atlantis interactions.
- */
-public abstract class AInteraction
-{
- protected static APar parameterStore = APar.instance();
-
- /** When the inteaction does'nt need repainting */
- public final static int NO_REPAINT = 0;
-
- /**
- * When the inteaction needs an automatic repainting (acoording to its hot
- * regions)
- */
- public final static int AUTOMATIC_REPAINT = 1;
-
- /** When the inteaction needs an repaint of all windows */
- public final static int ALL_WINDOWS_REPAINT = 3;
-
- /** When the inteaction needs to reapint from scratch its window */
- public final static int WINDOW_TOTAL_REPAINT = 4;
-
- /**
- * The constant used to specify that the interaction wants SCREEN
- * COORDINATES
- */
- public final static int SCREEN_COORDINATES = 0;
-
- /** The constant used to specify that the interaction wants WORLD COORDINATES */
- public final static int WORLD_COORDINATES = 1;
-
- protected final static ADrawParameters frameDrawParameters = new ADrawParameters(true, AColorMap.BK, 4, 1, 1, AGraphics.SYMBOL_FILLED_BOX);
-
- protected final static ADrawParameters drawParameters = new ADrawParameters(true, AColorMap.WH, 4, 1, 0, AGraphics.SYMBOL_FILLED_BOX);
-
- protected AWindow window;
- protected static final int ctrlPtSize = 1;
- protected RectangularShape[] hr;
- protected Point2D.Double[] pt;
- protected Rectangle oldAffectedRegion;
- protected int hotRegionsCount;
- protected int repaintMode;
- protected int coordinatesType;
- protected boolean isPrintable;
-
- /**
- * Creates a new Interaction.
- *
- * @param hotRegionsCount The number of hot regions used be the interaction
- * @param repaintMode The type of repaint wanted. Could be: NO_REPAINT,
- * AUTOMATIC_REPAINT, WINDOW_REPAINT, ALL_WINDOWS_REPAINT,
- * WINDOW_TOTAL_REPAINT, ALL_WINDOWS_TOTAL_REPAINT.
- * @param coordinatesType Could be: SCREEN_COORDINATES, WORLD_COORDINATES.
- * @param isPrintable A boolean which indicates whether or not this
- * interaction should be printable.
- */
- public AInteraction(int hotRegionsCount, int repaintMode, int coordinatesType, boolean isPrintable)
- {
-
- this.hotRegionsCount = hotRegionsCount;
- this.repaintMode = repaintMode;
- this.coordinatesType = coordinatesType;
- this.isPrintable = isPrintable;
-
- hr = new RectangularShape[hotRegionsCount];
-
- /*
- * pt = new Point2D.Double[getPointsToIncludeCount()]; for (int i = 0; i <
- * pt.length; i++) pt[i] = new Point2D.Double(0, 0);
- */
- }
-
- /**
- * Called by the InteractionsManager when the interaction gets connected to
- * it.
- */
- public void connect(AInteractionsManager manager)
- {
- this.window = manager.getWindow();
- }
-
- /**
- * Called by the InteractionsManager when the interaction gets disconnected
- * from it.
- */
- public void disconnect()
- {
- this.window = null;
- }
-
- /**
- * Called by the window on which this interaction works in order to allow
- * the interaction to draw on it.
- *
- * @param g The graphical context on which to draw.
- */
- public abstract void paint(Graphics2D g);
-
- /**
- * This method should convert any hot region used by interaction from user
- * coordinates to screen coordinates.
- *
- * @param region The number of the hot region which needs to be converted.
- * @return The new RectangularShape object which contains the converted
- * region.
- */
- public RectangularShape getScreenHotRegion(int region)
- {
- switch (coordinatesType)
- {
- case AInteraction.SCREEN_COORDINATES:
- return hr[region];
-
- case AInteraction.WORLD_COORDINATES:
- RectangularShape screenShape = (RectangularShape) hr[region].clone();
- Point2D.Double center = window.calculateDisplay(screenShape.getCenterX(), screenShape.getCenterY());
- double w = screenShape.getWidth();
- double h = screenShape.getHeight();
-
- screenShape.setFrame(center.x - w / 2, center.y - w / 2, w, h);
- return screenShape;
-
- default:
- return null;
- }
- }
-
- /**
- * Returns an APolygon made up of the first 4 Hot Regions.
- *
- * @return The APolygon.
- */
- public APolygon getAPolygon()
- {
- APolygon p = new APolygon();
-
- for (int i = 0; i < 4; i++)
- p.addPoint(hr[i].getCenterX(), hr[i].getCenterY());
-
- return p;
- }
-
- /**
- * Sets the x-coordinate of the center of a RectangularShape.
- *
- * @param shape The shape to set the center to.
- * @param x The new x-coordinate of the center.
- */
- protected void setCenterX(RectangularShape shape, double x)
- {
- double w = shape.getWidth();
- double h = shape.getHeight();
-
- shape.setFrame(x - w / 2, shape.getY(), w, h);
- }
-
- /**
- * Sets the y-coordinate of the center of a RectangularShape.
- *
- * @param shape The shape to set the center to.
- * @param y The new y-coordinate of the center.
- */
- protected void setCenterY(RectangularShape shape, double y)
- {
- double w = shape.getWidth();
- double h = shape.getHeight();
-
- shape.setFrame(shape.getX(), y - h / 2, w, h);
- }
-
- /**
- * Sets the center of a RectangularShape to (x, y).
- *
- * @param shape The shape to set the center to.
- * @param x The new x-coordinate of the center.
- * @param y The new y-coordinate of the center.
- */
- protected void setCenter(RectangularShape shape, double x, double y)
- {
- double w = shape.getWidth();
- double h = shape.getHeight();
-
- shape.setFrame(x - w / 2, y - h / 2, w, h);
- }
-
- /**
- * Returns the center of an arbitrary hot-region.
- *
- * @param s The RectangularShape object the center of which is required
- * @return The center in double format
- */
- public Point2D.Double getCenter(RectangularShape s)
- {
- return new Point2D.Double(s.getCenterX(), s.getCenterY());
- }
-
- /**
- * Returns the distance between two hot-regions. The result depends on the
- * coordinates type.
- *
- * @param region1 The first region
- * @param region2 The second region
- * @return The distance
- */
- protected double getRadius(int region1, int region2)
- {
- double dx = hr[region1].getCenterX() - hr[region2].getCenterX();
- double dy = hr[region1].getCenterX() - hr[region2].getCenterY();
-
- return Math.sqrt(dx * dx + dy * dy);
- }
-
- /**
- * Returns the distance between a point and a hot-regions. The result
- * depends on the coordinates type.
- *
- * @param x The x coordinate of the point
- * @param y The y coordinate of the point
- * @param region The region index to be used to get the region itself
- * @return The distance
- */
- protected double getRadius(double x, double y, int region)
- {
- double dx = x - hr[region].getCenterX();
- double dy = y - hr[region].getCenterY();
-
- return Math.sqrt(dx * dx + dy * dy);
- }
-
- /**
- * Returns the distance between the center (0, 0) and a hot-regions. The
- * result depends on the coordinates type.
- *
- * @param s The hot-region
- * @return The distance
- */
- protected double getRadius(RectangularShape s)
- {
- return s.getCenterX() * s.getCenterX() + s.getCenterY() * s.getCenterY();
- }
-
- /**
- * Retirns the angle made by the line connecting the two hot-regions and the
- * horizontal axis.
- *
- * @param region1 The first region
- * @param region2 The second region
- * @return the angle in radians.
- */
- protected double getAngle(int region1, int region2)
- {
- double dx = hr[region1].getCenterX() - hr[region2].getCenterX();
- double dy = hr[region1].getCenterY() - hr[region2].getCenterY();
-
- if (dx != 0 || dy != 0)
- // is this correct
- return Math.atan2(dx, dy);
- else
- return 0.;
- }
-
- protected void drawActivePoint(double x, double y, AGraphics g)
- {
- g.updateDrawParameters(frameDrawParameters);
- g.drawSymbol(x, y);
- g.updateDrawParameters(drawParameters);
- g.drawSymbol(x, y);
- }
-
- protected void drawActivePoint(int region, AGraphics g)
- {
- g.updateDrawParameters(frameDrawParameters);
- g.drawSymbol(hr[region].getCenterX(), hr[region].getCenterY());
- g.updateDrawParameters(drawParameters);
- g.drawSymbol(hr[region].getCenterX(), hr[region].getCenterY());
- }
-
- protected void drawLine(int region1, int region2, AGraphics g)
- {
- g.drawLine(hr[region1].getCenterX(), hr[region1].getCenterY(), hr[region2].getCenterX(), hr[region2].getCenterY());
- }
-
- public boolean isPrintable()
- {
- return isPrintable;
- }
-
- public AModifier[] getModifiers()
- {
- return new AModifier[0];
- }
-
- public void showPopupMenu(Point p, int region) {
- APopupHelper.showPopupMenu(p, window, getPopupItems());
- }
-
- public JPopupMenu getPopupMenu() {
- return APopupHelper.getPopupMenu(getPopupItems());
- }
-
- public JMenuItem[] getPopupItems() {
- return null;
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/interactions/AInteractionGroup.java b/graphics/AtlantisJava/src/atlantis/interactions/AInteractionGroup.java
deleted file mode 100755
index fece4376137..00000000000
--- a/graphics/AtlantisJava/src/atlantis/interactions/AInteractionGroup.java
+++ /dev/null
@@ -1,143 +0,0 @@
-package atlantis.interactions;
-
-import atlantis.canvas.ACanvas;
-import atlantis.parameters.APar;
-
-import java.awt.event.ActionEvent;
-import java.awt.event.ActionListener;
-import javax.swing.JMenuItem;
-import javax.swing.JPanel;
-import java.util.Vector;
-
-
-/**
- * The InteractionGroup groups interactions of the same kind under a single
- * object. The InteractionToolBar deals with the InteractionGroups instead
- * of dealing with the interactions directly.
- */
-public abstract class AInteractionGroup {
- protected static APar parameterStore = APar.instance();
-
- /** A group type which once made current affects only the window in which it works*/
- public static final int WINDOW_GROUP=0;
-
- /** A group type which once made current affects all the windows of the Canvas*/
- public static final int CANVAS_GROUP=1;
-
- protected String name;
- protected String toolTip;
- protected AInteractionsManager iManager;
- private int groupType;
- private boolean isCurrent=false;
- private Vector<AInteraction> interactions;
-
- /**
- * Creates an InteractionGroup of a specific type
- * and connected to some InteractionsManager
- * @param groupType The type of the interface. Can be: WINDOW_GROUP or CANVAS_GROUP
- * @param iManager The InteractionsManager to which this group will be connected.
- */
- public AInteractionGroup(int groupType, AInteractionsManager iManager) {
-
- this.groupType=groupType;
- this.iManager=iManager;
-
- interactions=new Vector<AInteraction>();
- }
-
- public void setGroupName(String name) {
- this.name=name;
- }
-
- public String getGroupName() {
- return name;
- }
-
- public void setToolTip(String toolTip) {
- this.toolTip=toolTip;
- }
-
- public String getToolTip() {
- return toolTip;
- }
-
- public JMenuItem getPopupItem() {
- JMenuItem item=new JMenuItem(name);
-
- item.addActionListener(new ActionListener() {
- public void actionPerformed(ActionEvent e) {
- ACanvas.getCanvas().getCurrentWindow().getInteractionToolBar().setSelectedGroup(name);
- }
- });
-
- return item;
- }
-
- /**
- * Called by the InteractionsManager when the group gets connected to it.
- */
- public void connect() {}
-
- /**
- * Called by the InteractionsManager when the group gets disconnected from it.
- */
- public void disconnect() {}
-
- public boolean isWindowGroup() {
- return(groupType==WINDOW_GROUP);
- }
-
- public boolean isCanvasGroup() {
- return(groupType==CANVAS_GROUP);
- }
-
- /**
- * Checks if any additional controls are provided by the current interaction group
- * @return true if the interaction group has additional controls
- */
- public boolean hasAdditionalControls() { return false; }
-
- /**
- * Returns the additional controls for the current interaction group
- * @return the panel containing the additional controls
- */
-
- public JPanel getAdditionalControls() { return new JPanel(); }
-
- /**
- * Registers a new interaction which will be available with this group.
- * @param i The Interaction to be registered.
- */
- protected void addInteraction(AInteraction i) {
- interactions.addElement(i);
- if(isCurrent)
- iManager.setContext(this);
- }
-
- /**
- * Removes a previously registered interaction from the group.
- * @param i The Interaction to be removed.
- */
- protected void removeInteraction(AInteraction i) {
- interactions.remove(i);
- }
-
- /**
- * Removes all previously registered interactions from the group.
- */
- protected void removeAllInteractions() {
- interactions.clear();
- }
-
- public Vector<AInteraction> getInteractions() {
- return interactions;
- }
-
- /**
- * Used to help copying of group. The group should set its internal state to be
- * the same as the state of the given group.
- * @param givenGroup The group to be copied.
- */
- public void setGroupState(AInteractionGroup givenGroup) {}
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/interactions/AInteractionsConfigReader.java b/graphics/AtlantisJava/src/atlantis/interactions/AInteractionsConfigReader.java
deleted file mode 100644
index 8b4dcaeb95f..00000000000
--- a/graphics/AtlantisJava/src/atlantis/interactions/AInteractionsConfigReader.java
+++ /dev/null
@@ -1,69 +0,0 @@
-package atlantis.interactions;
-
-import java.util.Hashtable;
-import java.util.Map.Entry;
-import java.util.Set;
-
-import org.w3c.dom.Node;
-import org.w3c.dom.NodeList;
-
-import atlantis.projection.AProjectionsManager;
-
-/**
- * Handles the "Interactions" node in the XML configuration file:
- * <ul>
- * <li>store the InteractionControl node for each projection</li>
- * <li>process the lists of available/default projections in demo mode</li>
- * </ul>
- *
- * @author waugh
- */
-public class AInteractionsConfigReader {
-
- /** The set of XML nodes with projection information (name : node). */
- private final static Hashtable<String,Node> projectionNodes = new Hashtable<String, Node>();
-
- /**
- * Read and process the Interactions information from the XML configuration file.
- *
- * @param node The XML Node which contains the <bold>Interactions</bold> node.
- */
- public static void readInteractions(Node node) {
- initProjectionNodes(node);
- setAvailableProjectionsInDemoMode();
- }
-
- /**
- * Get the configuration XML node corresponding to a given projection.
- *
- * @param projectionName the name of the projection
- * @return the corresponding InteractionControl node
- */
- public static Node getNode(String projectionName) {
- return projectionNodes.get(projectionName);
- }
-
- private static void initProjectionNodes(Node node) {
- NodeList childNodes=node.getChildNodes();
- for(int i=0; i<childNodes.getLength(); i++) {
- Node child=childNodes.item(i);
-
- if(child.getNodeType()==Node.ELEMENT_NODE) {
- String name=child.getAttributes().getNamedItem("projectionName").getNodeValue();
- projectionNodes.put(name, child);
- }
- }
- }
-
- private static void setAvailableProjectionsInDemoMode() {
- Set<Entry<String, Node>> entries = projectionNodes.entrySet();
- for (Entry<String,Node> entry : entries) {
- String name = entry.getKey();
- Node node = entry.getValue();
- boolean availableInDemoMode = node.getAttributes().getNamedItem("availableInDemoMode").getNodeValue().equals("YES");
- boolean defaultInDemoMode = node.getAttributes().getNamedItem("defaultInDemoMode").getNodeValue().equals("YES");
- if (availableInDemoMode) AProjectionsManager.makeProjectionAvailableInDemoMode(name);
- if (defaultInDemoMode) AProjectionsManager.makeProjectionDefaultInDemoMode(name);
- }
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/interactions/AInteractionsManager.java b/graphics/AtlantisJava/src/atlantis/interactions/AInteractionsManager.java
deleted file mode 100755
index 40b0a2d484f..00000000000
--- a/graphics/AtlantisJava/src/atlantis/interactions/AInteractionsManager.java
+++ /dev/null
@@ -1,535 +0,0 @@
-package atlantis.interactions;
-
-import java.awt.Rectangle;
-import java.awt.event.KeyEvent;
-import java.awt.event.MouseEvent;
-import java.awt.event.MouseListener;
-import java.awt.event.MouseMotionListener;
-import java.awt.event.WindowFocusListener;
-import java.awt.event.WindowEvent;
-import java.awt.geom.Point2D;
-import java.awt.geom.RectangularShape;
-import java.util.LinkedList;
-import java.util.Vector;
-
-import javax.swing.JPopupMenu;
-import javax.swing.SwingUtilities;
-import javax.swing.JMenuItem;
-
-import atlantis.canvas.ACanvas;
-import atlantis.canvas.AWindow;
-import atlantis.gui.AEventQueue;
-import atlantis.gui.AInteractionToolBar;
-import atlantis.gui.APointerPositionWindow;
-import atlantis.gui.APreferencesControl;
-import atlantis.projection.AProjectionTrackResidual;
-import atlantis.projection.AProjectionLegoPlot;
-import atlantis.projection.AProjection2D;
-
-/**
- * The InteractionsManager connects to the corresponding window in order to
- * provide basic functionality to the interactions.
- */
-public class AInteractionsManager
-implements MouseListener, MouseMotionListener, WindowFocusListener {
-
- public final static int LEFT=0;
- public final static int MIDDLE=1;
- public final static int RIGHT=2;
- public final static int ALL=3;
-
- private final static int safetySize=5;
-
- private AWindow window; //The window that is monitored by this interaction manager
- private LinkedList<AInteraction> interactions; //A list of all the interactions linked to this manager
- private AInteraction dragInter;
- private int dragInterHotRegion;
-// private AInteraction mcInteraction; //This one is set but not used by anything
-// private int mcRegion; //This one is set but not used by anything
- private RectangularShape[] old_hr;
- private AInteractionGroup previousInterface;
- private AModifier[] mouseModifiers;
- private boolean origAlias=false;
-
- /**
- * Creates an InteractionsManager to work with a specific window.
- * @param _window The window with wich the InteractionsManager should work.
- */
- public AInteractionsManager(AWindow _window) {
- this.window=_window;
-
- interactions=new LinkedList<AInteraction>();
-// mcInteraction=null;
-// mcRegion=-1;
-
- window.addMouseListener(this);
- window.addMouseMotionListener(this);
-
- mouseModifiers=new AModifier[] {
- new AModifier(KeyEvent.VK_O, true, "Output of pointer position"),
- new AModifier(KeyEvent.VK_W, true, "Window Menu pops up"),
- new AModifier(KeyEvent.VK_I, true, "Interaction Manager pops up"),
- new AModifier(KeyEvent.VK_UNDEFINED, true, "Interaction Menu pops up")
- };
- }
-
- public AModifier[] getMouseModifiers() {
- return mouseModifiers;
- }
-
- // Implementation of MouseListener
-
- public void mousePressed(MouseEvent e) {
-
- if(!ACanvas.getCanvas().getCurrentWindow().equals(window))
- ACanvas.getCanvas().setCurrentWindow(window.getName());
-
- if(AInteractionsManager.isIntRightMouseButton(e))
- switch(AEventQueue.getKeyboardState()) {
-
- case KeyEvent.VK_W:
- if(!(window.getProjection() instanceof AProjectionTrackResidual))
- AWindow.getPopupMenu().show(window, e.getX(), e.getY());
- return;
-
- case KeyEvent.VK_I:
- JPopupMenu menu=AInteractionToolBar.getInteractionMenu(window);
-
- menu.show(window, e.getX(), e.getY());
- return;
-
- case KeyEvent.VK_O:
- Point2D.Double position =window.calculateUser(e.getX(),e.getY());
- //If LegoPlot need to alter phi coord using reverse of the adjustPhi function
- if( window.getProjection() instanceof AProjectionLegoPlot)
- position.x=-AProjectionLegoPlot.adjustPhi(window,-position.x,position.y);
- //Apply inverse non-linear transforms, if in 2D projection
- if ( window.getProjection() instanceof AProjection2D)
- position = ((AProjection2D)window.getProjection()).inverseNonLinearTransform(position);
- //Add labels
- String positionX = window.getProjection().getXLabel() + parseUnits(position.x, window.getProjection().getXUnits());
- String positionY = window.getProjection().getYLabel() + parseUnits(position.y, window.getProjection().getYUnits());
- APreferencesControl.setPosMenuItem(true);//shows window if not already visible
- APointerPositionWindow.getInstance().toFront();//brings to front
- APointerPositionWindow.append(positionX + ", " + positionY + "\n");
- return;
- }
-
- processMousePressed(e);
-
- if(dragInter!=null) {
- dragInter.hr=old_hr;
- ((AMouseDragListener)dragInter).cancel();
-// if(dragInter instanceof AEnterExitListener)
-// ((AEnterExitListener)dragInter).exited(dragInterHotRegion);
- repaintInteraction(dragInter);
- dragInter=null;
- return;
- }
-
- if(AInteractionsManager.isIntRightMouseButton(e))
- if(processPopupShow(e))
- return;
-
- if(setupDraggingByHotRegion(e)) return;
- if(initializeSleepingInteraction(e)) return;
- }
-
- private boolean processPopupShow(MouseEvent e) {
- for(int i=interactions.size()-1; i>=0; i--) {
- AInteraction interaction=(AInteraction)interactions.get(i);
-
- for(int region=0; region<interaction.hr.length; region++) {
- if(interaction.getScreenHotRegion(region).contains(e.getPoint())) {
- interaction.showPopupMenu(e.getPoint(), region);
- return true;
- }
- }
- }
-
- for(int i=interactions.size()-1; i>=0; i--) {
- AInteraction interaction=(AInteraction)interactions.get(i);
-
- //Turn off right click menu for pick interaction
- JMenuItem[] projmenu = (interaction instanceof APickInteraction) ? null : window.getProjection().getPopupItems();
- JMenuItem[] intmenu = (interaction instanceof APickInteraction) ? null : interaction.getPopupItems();
-
- JPopupMenu finalmenu = new JPopupMenu();
-
- // Combine projection and interaction menus
- for (int it = 0; intmenu != null && it < intmenu.length; it++) {
- finalmenu.add(intmenu[it]);
- }
-
- if (projmenu != null && projmenu.length > 0 &&
- intmenu != null && intmenu.length > 0) {
-
- finalmenu.addSeparator();
- }
-
- for (int it = 0; projmenu != null && it < projmenu.length; it++) {
- finalmenu.add(projmenu[it]);
- }
-
- if (finalmenu.getComponentCount() != 0) {
- finalmenu.show(window, (int)e.getPoint().getX(), (int)e.getPoint().getY());
- }
- }
-
- return false;
- }
-
- public void mouseReleased(MouseEvent e) {
- if(dragInter!=null) {
- ((AMouseDragListener)dragInter).stop();
-// if(dragInter instanceof AEnterExitListener)
-// ((AEnterExitListener)dragInter).exited(dragInterHotRegion);
- repaintInteraction(dragInter);
- dragInter=null;
- }
- //reset anti-alias
- if(origAlias && !(dragInter instanceof ASelection))
- APreferencesControl.setAliasMenuItem(true);
- }
-
- public void mouseClicked(MouseEvent e) {}
-
- /**
- * This function is called each time we enter the window this interaction manager is assigned to
- */
- public void mouseEntered(MouseEvent e) {
-
- //Loop over interaction list from the end
- for(int i=interactions.size()-1; i>=0; i--) {
-
- //get the interaction
- AInteraction interaction=(AInteraction)interactions.get(i);
-
- //Check if this one listens to Enter/Exit events
- if (interaction instanceof AEnterExitListener){
- ((AEnterExitListener)interaction).entered();
- }
- }
- }
-
- /**
- * This function is called each time we exit the window this interaction manager is assigned to
- */
- public void mouseExited(MouseEvent e) {
-
- //Loop over interaction list from the end
- for(int i=interactions.size()-1; i>=0; i--) {
-
- //get the interaction
- AInteraction interaction=(AInteraction)interactions.get(i);
-
- //Check if this one listens to Enter/Exit events
- if (interaction instanceof AEnterExitListener)
- ((AEnterExitListener)interaction).exited();
- }
- }
-
- private void processMousePressed(MouseEvent e) {
- //update if using anti-alias so can switch off during drag
- if(!(dragInter instanceof ASelection))
- origAlias = APreferencesControl.getAliasMenuItem();
- for(int i=interactions.size()-1; i>=0; i--) {
- AInteraction interaction=(AInteraction)interactions.get(i);
-
- if(!(interaction instanceof AMousePressListener)) continue;
- AMousePressListener clickListener=(AMousePressListener)interaction;
-
- if(clickListener.getPressButton()!=AInteractionsManager.ALL)
- if(clickListener.getPressButton()!=getButton(e)) continue;
- Point2D.Double p=null;
-
- switch(interaction.coordinatesType) {
- case AInteraction.SCREEN_COORDINATES:
- p=new Point2D.Double(e.getX(), e.getY());
- break;
-
- case AInteraction.WORLD_COORDINATES:
- // p = window.calculateUser(inverseNonLinearTransform(e.getPoint()));
- p=window.calculateUser(e.getPoint());
- break;
- }
- clickListener.pressed(p, getButton(e), AEventQueue.getKeyboardState());
- setTopZOrder(interaction);
- repaintInteraction(interaction);
- }
- }
-
- // Implementation of MouseMotionListener
-
- public void mouseDragged(MouseEvent e) {
- if(dragInter==null) return;
-
- //switch off anti-alias
- if(origAlias && !(dragInter instanceof ASelection))
- APreferencesControl.setAliasMenuItem(false);
- Point2D.Double p=new Point2D.Double(e.getX(), e.getY());
-
- if(dragInter.coordinatesType==AInteraction.WORLD_COORDINATES)
- // p = dragInter.manager.getWindow().calculateUser(inverseNonLinearTransform(p));
- p=window.calculateUser(p);
-
- ((AMouseDragListener)dragInter).drag(p, dragInterHotRegion, AEventQueue.getKeyboardState());
- repaintInteraction(dragInter);
- }
-
- //This function is called every time the mouse is moved on the window
- public void mouseMoved(MouseEvent e) {
- }
-
- // Implementation of WindowsFocusListener
-
- /**
- * Get called each time the canvas has obtained a focus
- */
- public void windowGainedFocus(WindowEvent e) {
- //Check if the mouse is over this window (or any of its children)
- if (getWindow().getMousePosition(true) != null){
- //raise a mouseEntered event, so the cursor gets updated
- this.mouseEntered(null);
- }
- }
-
- /**
- * Get called each time the canvas has lost a focus
- */
- public void windowLostFocus(WindowEvent e) {}
-
- //Methods belonging to this class
-
- /**
- * Returns all the interactions associated with this InteractionsManager.
- * @return The LinkedList containing the interactions.
- * DO NOT CHANGE THIS LINKEDLIST, JUST READ IT.
- */
- public LinkedList<AInteraction> getInteractions() {
- return interactions;
- }
-
- public AWindow getWindow() {
- return window;
- }
-
- /**
- * This function disconnects the current pannel and all it's
- * interactions from the InteractionsManager.
- */
- public void forgetContext() {
- // Disconnect all the old interactions
- if(previousInterface!=null) previousInterface.disconnect();
- for(int i=0; i<interactions.size(); i++) {
- AInteraction inter=(AInteraction)interactions.get(i);
-
- inter.disconnect();
- }
-
- // Clear the list and repaint the window
- interactions.clear();
- window.repaint();
- }
-
- /**
- * Sets the current interaction interface and adds its interactions to the list
- * (removing first the old interface and its interactions).
- * @param iFace The new interface.
- */
- public void setContext(AInteractionGroup iFace) {
- forgetContext();
-
- if(iFace!=null)
- {
- // add to the list, connect and repaint the new interactions
- Vector<AInteraction> iFaceInter=iFace.getInteractions();
-
- for(int i=0; i<iFaceInter.size(); i++) {
- AInteraction inter=(AInteraction)iFaceInter.get(i);
- interactions.addLast(inter);
- inter.connect(this);
- repaintInteraction(inter);
- }
-
- iFace.connect();
- }
- previousInterface=iFace;
- }
-
- private void repaintInteraction(AInteraction interaction) {
- switch(interaction.repaintMode) {
- case AInteraction.NO_REPAINT:
- return;
-
- case AInteraction.ALL_WINDOWS_REPAINT:
- window.repaint();
- ACanvas.getCanvas().repaintOthers(window);
- return;
-
- case AInteraction.WINDOW_TOTAL_REPAINT:
- window.repaintFromScratch();
- return;
-
- case AInteraction.AUTOMATIC_REPAINT:
- Rectangle regionToRedraw=interaction.getScreenHotRegion(0).getBounds();
-
- for(int i=1; i<interaction.hr.length; i++)
- regionToRedraw.add(interaction.getScreenHotRegion(i).getBounds());
-
- if((interaction.pt!=null)&&(interaction.pt.length!=0))
- for(int i=0; i<interaction.pt.length; i++)
- regionToRedraw.add(getScreenPointToInclude(interaction, i));
-
- regionToRedraw.x-=safetySize;
- regionToRedraw.y-=safetySize;
- regionToRedraw.width+=2*safetySize;
- regionToRedraw.height+=2*safetySize;
-
- if(interaction.oldAffectedRegion==null)
- window.repaint(regionToRedraw);
- else
- window.repaint(SwingUtilities.computeUnion(interaction.oldAffectedRegion.x,
- interaction.oldAffectedRegion.y, interaction.oldAffectedRegion.width,
- interaction.oldAffectedRegion.height, new Rectangle(regionToRedraw)));
-
- interaction.oldAffectedRegion=regionToRedraw;
- return;
- }
- }
-
- /**
- * This method converts the specified "point to include" from user
- * coordinates to screen coordinates.
- * If the point is already in screen coordinates it just returns it.
- */
- private Point2D.Double getScreenPointToInclude(AInteraction interaction, int n) {
- switch(interaction.coordinatesType) {
- case AInteraction.SCREEN_COORDINATES:
- return interaction.pt[n];
-
- case AInteraction.WORLD_COORDINATES:
- return window.calculateDisplay(interaction.pt[n]);
-
- default:
- return null;
- }
- }
-
- private boolean setupDraggingByHotRegion(MouseEvent e) {
- for(int i=interactions.size()-1; i>=0; i--) {
- AInteraction interaction=(AInteraction)interactions.get(i);
-
- if(!(interaction instanceof AMouseDragListener)) continue;
- AMouseDragListener dInter=(AMouseDragListener)interaction;
-
- if(dInter.getButton()!=getButton(e)) continue;
-
- for(int j=0; j<interaction.hr.length; j++) {
- if(interaction.getScreenHotRegion(j).contains(e.getPoint())) {
- dragInter=interaction;
- dragInterHotRegion=j;
-
- old_hr=new RectangularShape[dragInter.hr.length];
- for(int region=0; region<dragInter.hr.length; region++)
- old_hr[region]=(RectangularShape)dragInter.hr[region].clone();
-
- Point2D.Double p=new Point2D.Double(e.getX(), e.getY());
-
- if(interaction.coordinatesType==AInteraction.WORLD_COORDINATES)
- p=window.calculateUser(p);
-
- // add this statement to guarantee "p0" in AZMRInteraction is initialized
- // maybe need more analysis here
- if(dragInter instanceof AZMRInteraction)
- ((ASleepMouseDragListener)dragInter).init(p, AEventQueue.getKeyboardState());
-
- setTopZOrder(dragInter);
- ((AMouseDragListener)dragInter).start(p, dragInterHotRegion, AEventQueue.getKeyboardState());
- repaintInteraction(dragInter);
- return true;
- }
- }
- }
- return false;
- }
-
- private boolean initializeSleepingInteraction(MouseEvent e) {
- for(int i=interactions.size()-1; i>=0; i--) {
- AInteraction interaction=(AInteraction)interactions.get(i);
-
- if(interaction instanceof ASleepMouseDragListener) {
- ASleepMouseDragListener sdListener=(ASleepMouseDragListener)interaction;
-
- if(sdListener.getButton()==getButton(e)) {
- dragInter=interaction;
-
- old_hr=new RectangularShape[dragInter.hr.length];
- for(int region=0; region<dragInter.hr.length; region++)
- old_hr[region]=(RectangularShape)dragInter.hr[region].clone();
-
- Point2D.Double p=new Point2D.Double(e.getX(), e.getY());
-
- if(interaction.coordinatesType==AInteraction.WORLD_COORDINATES)
- p=window.calculateUser(p);
-
- dragInterHotRegion=((ASleepMouseDragListener)dragInter).init(p, AEventQueue.getKeyboardState());
-
- setTopZOrder(dragInter);
- ((AMouseDragListener)dragInter).start(p, dragInterHotRegion, AEventQueue.getKeyboardState());
-// if(dragInter instanceof AEnterExitListener)
-// ((AEnterExitListener)dragInter).entered(dragInterHotRegion);
-
- repaintInteraction(dragInter);
- return true;
- }
- }
- }
-
- return false;
- }
-
- private void setTopZOrder(AInteraction ineraction) {
- interactions.remove(ineraction);
- interactions.addLast(ineraction);
- repaintInteraction((AInteraction)interactions.getLast());
- }
-
- private int getButton(MouseEvent e) {
- if(SwingUtilities.isLeftMouseButton(e))
- return LEFT;
- else if(SwingUtilities.isMiddleMouseButton(e))
- return MIDDLE;
- else if(AInteractionsManager.isIntRightMouseButton(e))
- return RIGHT;
- else
- return -1;
- }
-
- private static boolean isIntRightMouseButton(MouseEvent e)
- {
- return SwingUtilities.isRightMouseButton(e) ||
- AEventQueue.getIntRightMouseButton();
- }
-
- private String parseUnits(double d, String units)
- {
- //covert units and value units shown are cm by default
- double abs = Math.abs(d);
- if(units.equals("(cm)"))
- {
- if (abs >= 100.)
- return ": " + Math.rint(1000. * d / 100.) / 1000. + " m";
- else if (abs >= 1.)
- return ": " + Math.rint(1000. * d / 1.) / 1000. + " cm";
- else if (abs >= 0.1)
- return ": " + Math.rint(1000. * d / 0.1) / 1000. + " mm";
- else
- return ": " + Math.rint(d / 0.0001) + " um";
- }
- else
- {
- return ": " + Math.rint(1000. * d / 1.) / 1000. + units;
- }
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/interactions/ALineSegment.java b/graphics/AtlantisJava/src/atlantis/interactions/ALineSegment.java
deleted file mode 100755
index 7fe3cfe1acf..00000000000
--- a/graphics/AtlantisJava/src/atlantis/interactions/ALineSegment.java
+++ /dev/null
@@ -1,165 +0,0 @@
-package atlantis.interactions;
-
-
-import atlantis.utils.AVector;
-import java.awt.geom.*;
-
-
-/**
- * A implementation of the java.awt.RectangularShape which
- * represents a segment of a line.
- */
-public class ALineSegment extends RectangularShape implements PathIterator {
-
- Point2D.Double p1;
- Point2D.Double p2;
- double thickness;
-
- public ALineSegment(Point2D.Double p1, Point2D.Double p2, double thickness) {
- this.p1=p1;
- this.p2=p2;
- this.thickness=thickness;
- }
-
- public ALineSegment(double x1, double y1, double x2, double y2, double thickness) {
- this.p1=new Point2D.Double(x1, y1);
- this.p2=new Point2D.Double(x2, y2);
- this.thickness=thickness;
- }
-
- private Point2D.Double[] calculateNodes() {
- AVector v1=new AVector(p1, p2).makeUnitary().scale(thickness/2).rotate(Math.PI/2);
- AVector v2=new AVector(p1, p2).makeUnitary().scale(thickness/2).rotate(-Math.PI/2);
-
- Point2D.Double[] p=new Point2D.Double[4];
-
- p[0]=new Point2D.Double(p1.x+v1.dx, p1.y+v1.dy);
- p[1]=new Point2D.Double(p2.x+v1.dx, p2.y+v1.dy);
- p[2]=new Point2D.Double(p2.x+v2.dx, p2.y+v2.dy);
- p[3]=new Point2D.Double(p1.x+v2.dx, p1.y+v2.dy);
-
- return p;
- }
-
- public Rectangle2D getBounds2D() {
- Point2D.Double[] p=calculateNodes();
-
- double minX, minY, maxX, maxY;
-
- minX=maxX=p[0].x;
- minY=maxY=p[0].y;
-
- for(int i=1; i<p.length; i++) {
- if(p[i].x<minX) minX=p[i].x;
- if(p[i].x>maxX) maxX=p[i].x;
- if(p[i].y<minY) minY=p[i].y;
- if(p[i].y>maxY) maxY=p[i].y;
- }
-
- return new Rectangle2D.Double(minX, minY, maxX-minX, maxY-minY);
- }
-
- public boolean contains(double x, double y) {
- boolean c=false;
- Point2D.Double[] p=calculateNodes();
-
- for(int i=0, j=p.length-1; i<p.length; j=i++)
- if((((p[i].y<=y)&&(y<p[j].y))||((p[j].y<=y)&&(y<p[i].y)))
- &&(x<(p[j].x-p[i].x)*(y-p[i].y)/(p[j].y-p[i].y)+p[i].x)
- ) c=!c;
-
- return c;
- }
-
- public boolean intersects(double x, double y, double w, double h) {
- return false;
- }
-
- public boolean contains(double x, double y, double w, double h) {
- return false;
- }
-
- public PathIterator getPathIterator(AffineTransform at) {
- lineNumber=-1;
- return this;
- }
-
- public void setFrame(double x, double y, double w, double h) {}
-
- public boolean isEmpty() {
- return false;
- }
-
- public double getWidth() {
- return getBounds2D().getWidth();
- }
-
- public double getHeight() {
- return getBounds2D().getHeight();
- }
-
- public double getX() {
- return getBounds2D().getX();
- }
-
- public double getY() {
- return getBounds2D().getY();
- }
-
- // PathIterator implementation
- int lineNumber;
-
- // Returns the coordinates and type of the current path segment in the iteration.
- public int currentSegment(double[] coords) {
- Point2D.Double[] p=calculateNodes();
-
- if(lineNumber==-1) {
- coords[0]=p[0].x;
- coords[1]=p[0].y;
- return PathIterator.SEG_MOVETO;
- }
-
- if(lineNumber==4) return PathIterator.SEG_CLOSE;
-
- coords[0]=p[lineNumber].x;
- coords[1]=p[lineNumber].y;
- return PathIterator.SEG_LINETO;
- }
-
- public int currentSegment(float[] coords) {
- Point2D.Double[] p=calculateNodes();
-
- if(lineNumber==-1) {
- coords[0]=(float)p[0].x;
- coords[1]=(float)p[0].y;
- return PathIterator.SEG_MOVETO;
- }
-
- if(lineNumber==4) return PathIterator.SEG_CLOSE;
-
- coords[0]=(float)p[lineNumber].x;
- coords[1]=(float)p[lineNumber].y;
- return PathIterator.SEG_LINETO;
- }
-
- // Returns the winding rule for determining the interior of the path.
- public int getWindingRule() {
- return PathIterator.WIND_NON_ZERO;
- }
-
- public boolean isDone() {
- if(lineNumber>4)
- return true;
- else
- return false;
- }
-
- public void next() {
- lineNumber++;
- }
-
- public String toString() {
- return "ALineSegment["+p1.x+", "+p1.y+", "+p2.x+", "+p2.y+"]";
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/interactions/AModifier.java b/graphics/AtlantisJava/src/atlantis/interactions/AModifier.java
deleted file mode 100644
index d1b57d65f83..00000000000
--- a/graphics/AtlantisJava/src/atlantis/interactions/AModifier.java
+++ /dev/null
@@ -1,85 +0,0 @@
-/*
- * AModifier.java
- *
- * Created on 16 July 2007, 12:17 by Adam Davison <adamd at hep.ucl.ac.uk>
- */
-
-package atlantis.interactions;
-
-import java.awt.event.KeyEvent;
-
-/**
- * A structure for holding details of an interaction modifier key
- *
- * @author Adam Davison
- */
-public class AModifier {
-
- public static AModifier nothing = new AModifier(KeyEvent.VK_UNDEFINED, false, "Default interaction");
-
- private int m_keycode;
- private char m_keychar;
-
- // Won't use mouse button id's from MouseEvent because i have some memory
- // of this not being very platform independant, can fiddle this if we need
- // middle click or something later.
- private boolean m_right;
-
- private String m_desc;
-
- public AModifier(int keycode, boolean right, String desc) {
- m_keycode = keycode;
- m_keychar = (char)keycode;
- m_right = right;
- m_desc = desc;
- }
-
- public int getKeyCode() {
- return m_keycode;
- }
-
- public char getKeyChar() {
- return m_keychar;
- }
-
- public boolean getRightClick() {
- return m_right;
- }
-
- public String toKeyString() {
- String ret = "";
- if (m_keycode != KeyEvent.VK_UNDEFINED) {
- ret = String.valueOf(m_keychar);
- if (m_right) {
- ret = ret.concat(" + ");
- }
- }
-
- if (m_right) {
- ret = ret.concat("Right");
- }
-
- return ret;
- }
-
- public String toDescString() {
- return m_desc;
- }
-
- // Two interactions are pretty much the same even if they have different
- // descriptions, hence I won't override equals here and cause problems
- // putting these things in containers or anything.
- public boolean sameAs(AModifier acmp) {
- if (acmp == null) { return false; }
-
- if (acmp.getKeyCode() != getKeyCode()) {
- return false;
- }
-
- if (acmp.getRightClick() != getRightClick()) {
- return false;
- }
-
- return true;
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/interactions/AMouseDragListener.java b/graphics/AtlantisJava/src/atlantis/interactions/AMouseDragListener.java
deleted file mode 100755
index 155f9126f2e..00000000000
--- a/graphics/AtlantisJava/src/atlantis/interactions/AMouseDragListener.java
+++ /dev/null
@@ -1,20 +0,0 @@
-package atlantis.interactions;
-
-
-import java.awt.geom.*;
-
-
-/**
- * Implemented by the interactions to get drag events
- * from the InteractionsManager.
- */
-public interface AMouseDragListener {
-
- // Should return one of the LEFT, MIDDLE or RIGHT constants from AWindow
- int getButton();
-
- void start(Point2D.Double p, int region, int key);
- void drag(Point2D.Double p, int region, int key);
- void stop();
- void cancel();
-}
diff --git a/graphics/AtlantisJava/src/atlantis/interactions/AMousePressListener.java b/graphics/AtlantisJava/src/atlantis/interactions/AMousePressListener.java
deleted file mode 100755
index a71c7ca2187..00000000000
--- a/graphics/AtlantisJava/src/atlantis/interactions/AMousePressListener.java
+++ /dev/null
@@ -1,16 +0,0 @@
-package atlantis.interactions;
-
-
-import java.awt.geom.*;
-
-
-/**
- * Implemented by the interactions to get press events
- * from the InteractionsManager.
- */
-public interface AMousePressListener {
-
- int getPressButton();
- void pressed(Point2D.Double p, int button, int key);
-}
-
diff --git a/graphics/AtlantisJava/src/atlantis/interactions/ANZMRGroup.java b/graphics/AtlantisJava/src/atlantis/interactions/ANZMRGroup.java
deleted file mode 100644
index 713743861be..00000000000
--- a/graphics/AtlantisJava/src/atlantis/interactions/ANZMRGroup.java
+++ /dev/null
@@ -1,16 +0,0 @@
-package atlantis.interactions;
-
-/**
- *
- * @author Adam Davison
- */
-public class ANZMRGroup extends AInteractionGroup {
-
- private ANZMRInteraction transformInteraction;
-
- public ANZMRGroup(AInteractionsManager iManager) {
- super(AInteractionGroup.WINDOW_GROUP, iManager);
- transformInteraction=new ANZMRInteraction();
- this.addInteraction(transformInteraction);
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/interactions/ANZMRInteraction.java b/graphics/AtlantisJava/src/atlantis/interactions/ANZMRInteraction.java
deleted file mode 100644
index 99ac11f99f3..00000000000
--- a/graphics/AtlantisJava/src/atlantis/interactions/ANZMRInteraction.java
+++ /dev/null
@@ -1,80 +0,0 @@
-package atlantis.interactions;
-
-import atlantis.nge.ANManager;
-import atlantis.nge.ANPickDrawer;
-import atlantis.nge.ANPickResultPrinter;
-import atlantis.nge.ANProjection;
-import atlantis.nge.ANProjection3D;
-import atlantis.nge.ANProjectionPhysics;
-import java.awt.Graphics2D;
-import java.awt.geom.Point2D.Double;
-
-/**
- *
- * @author Adam Davison, Mark Stockton
- */
-public class ANZMRInteraction extends AInteraction implements ASleepMouseDragListener, AMousePressListener {
-
- private Double m_last = null;
-
- public ANZMRInteraction() {
- super(0, WINDOW_TOTAL_REPAINT, SCREEN_COORDINATES, false);
- }
-
- @Override
- public void paint(Graphics2D g) {
- //throw new UnsupportedOperationException("Not supported yet.");
- }
-
- public void doRotation(double dx, double dy) {
- ANProjection np = (ANManager.getManager().getFrameManager(window).getTargetProjection());
- if (np instanceof ANProjection3D) {
- ((ANProjection3D) np).dPhi((float) (dx / 4.0));
- ((ANProjection3D) np).dElev((float) (dy / 4.0));
- }else if (np instanceof ANProjectionPhysics) {
- ((ANProjectionPhysics) np).dPhi((float) (dx / 4.0));
- ((ANProjectionPhysics) np).dElev((float) (dy / 4.0));
- }
- }
-
- public int getButton() {
- return AInteractionsManager.LEFT;
- }
-
- public void start(Double p, int region, int key) {
- m_last = p;
- }
-
- public void drag(Double p, int region, int key) {
- double dx = (p.getX() - m_last.getX());
- double dy = (p.getY() - m_last.getY());
-
- doRotation(dx,dy);
-
- m_last = p;
- }
-
- public void stop() {
-
- }
-
- public void cancel() {
-
- }
-
- public int init(Double p, int key) {
- return -1;
- }
-
- public int getPressButton() {
- return AInteractionsManager.ALL;
- }
-
- public void pressed(Double p, int button, int key) {
- System.out.println("ZMR PRESS: " + p.getX() + ":" + p.getY());
- ANPickDrawer pd = new ANPickDrawer(window, window.getWidth(), window.getHeight(),
- (int)p.getX(), (int)p.getY(), new ANPickResultPrinter());
- pd.doPick();
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/interactions/AParallelogramSelection.java b/graphics/AtlantisJava/src/atlantis/interactions/AParallelogramSelection.java
deleted file mode 100755
index 75e3f512cbc..00000000000
--- a/graphics/AtlantisJava/src/atlantis/interactions/AParallelogramSelection.java
+++ /dev/null
@@ -1,119 +0,0 @@
-package atlantis.interactions;
-
-
-import java.awt.*;
-import java.awt.geom.*;
-
-
-public class AParallelogramSelection extends ASelection {
- final private static int STARTING_WIDTH=25;
-
- public AParallelogramSelection() {
- super(6);
- }
-
- public int init(Point2D.Double p, int key) {
- isValid=false;
-
- setCenter(hr[0], p.x-STARTING_WIDTH, p.y);
- setCenter(hr[1], p.x-STARTING_WIDTH, p.y);
- setCenter(hr[2], p.x+STARTING_WIDTH, p.y);
- setCenter(hr[3], p.x+STARTING_WIDTH, p.y);
- setCenter(hr[4], p.x, p.y);
- setCenter(hr[5], p.x, p.y);
-
- region=5;
- return region;
- }
-
- public void drag(Point2D.Double p, int region, int key) {
- isValid=true;
-
- double dx, dy;
-
- switch(region) {
- case 4:
- dx=hr[0].getCenterX()-hr[4].getCenterX();
- dy=hr[0].getCenterY()-hr[4].getCenterY();
-
- setCenter(hr[region], p.x, p.y);
- setCenter(hr[0], p.x+dx, p.y+dy);
- setCenter(hr[3], p.x-dx, p.y-dy);
- break;
-
- case 5:
- dx=hr[1].getCenterX()-hr[5].getCenterX();
- dy=hr[1].getCenterY()-hr[5].getCenterY();
-
- setCenter(hr[region], p.x, p.y);
- setCenter(hr[1], p.x+dx, p.y+dy);
- setCenter(hr[2], p.x-dx, p.y-dy);
- break;
-
- case 0:
- case 3:
- setCenter(hr[region], p.x, p.y);
-
- dx=hr[region].getCenterX()-hr[4].getCenterX();
- dy=hr[region].getCenterY()-hr[4].getCenterY();
-
- if(region==3) {
- dx=-dx;
- dy=-dy;
- }
-
- setCenter(hr[1], hr[5].getCenterX()+dx, hr[5].getCenterY()+dy);
- setCenter(hr[2], hr[5].getCenterX()-dx, hr[5].getCenterY()-dy);
- setCenter(hr[0], hr[4].getCenterX()+dx, hr[4].getCenterY()+dy);
- setCenter(hr[3], hr[4].getCenterX()-dx, hr[4].getCenterY()-dy);
- break;
-
- case 1:
- case 2:
- setCenter(hr[region], p.x, p.y);
-
- dx=hr[region].getCenterX()-hr[5].getCenterX();
- dy=hr[region].getCenterY()-hr[5].getCenterY();
-
- if(region==2) {
- dx=-dx;
- dy=-dy;
- }
-
- setCenter(hr[1], hr[5].getCenterX()+dx, hr[5].getCenterY()+dy);
- setCenter(hr[2], hr[5].getCenterX()-dx, hr[5].getCenterY()-dy);
- setCenter(hr[0], hr[4].getCenterX()+dx, hr[4].getCenterY()+dy);
- setCenter(hr[3], hr[4].getCenterX()-dx, hr[4].getCenterY()-dy);
- break;
- }
- }
-
- public void paint(Graphics2D g) {
- paintStandard(g);
- }
-
- /**
- * Make the affine transform which corresponds to this
- * paralleogram-shaped selection.
- */
- public Point2D.Double[] getCorners() {
- int first=getUpperLeftRegion();
-
- // Calculate the opposite index.
- int third=(first+2)%4;
-
- // Now use the cross-product to determine which of the
- // remaining points is the one which keep the path going
- // clockwise.
- int second=(first+1)%4;
- double dx0=hr[third].getCenterX()-hr[first].getCenterX();
- double dy0=hr[third].getCenterY()-hr[first].getCenterY();
- double dx1=hr[second].getCenterX()-hr[first].getCenterX();
- double dy1=hr[second].getCenterY()-hr[first].getCenterY();
-
- if(dx0*dy1-dy0*dx1>0) second=(first+3)%4;
-
- return convert(first, second, third);
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/interactions/APickGroup.java b/graphics/AtlantisJava/src/atlantis/interactions/APickGroup.java
deleted file mode 100755
index e45447479dd..00000000000
--- a/graphics/AtlantisJava/src/atlantis/interactions/APickGroup.java
+++ /dev/null
@@ -1,102 +0,0 @@
-package atlantis.interactions;
-
-import java.awt.event.ActionEvent;
-import java.awt.event.ActionListener;
-
-import javax.swing.JComboBox;
-import javax.swing.JMenu;
-import javax.swing.JMenuItem;
-import javax.swing.JPanel;
-
-import atlantis.canvas.ACanvas;
-import atlantis.parameters.APar;
-
-public class APickGroup extends AInteractionGroup
-{
- private APickInteraction pickInteraction;
- private JComboBox mode;
- // the panel that will contain the additional controls for the interactions
- private JPanel additionalControls;
-
- private final static String HITS = "Event Data";
- private final static String DETECTORS = "Detectors";
-
- public APickGroup(AInteractionsManager iManager)
- {
- super(AInteractionGroup.CANVAS_GROUP, iManager);
-
- // create the additional controls panel
- additionalControls = new JPanel();
-
- pickInteraction = new APickInteraction();
- addInteraction(pickInteraction);
- mode = new JComboBox();
- mode.addItem(HITS);
- mode.addItem(DETECTORS);
- if (parameterStore.get("Event", "PickingMode").getI() == 0)
- mode.setSelectedItem(HITS);
- else
- mode.setSelectedItem(DETECTORS);
- mode.addActionListener(new ModeListener());
- additionalControls.add(mode);
- }
-
- /**
- * pick has additional controls, so return true
- */
- public boolean hasAdditionalControls() {
- return true;
- }
-
- /**
- * returns the additional controls
- */
- public JPanel getAdditionalControls() {
- return additionalControls;
- }
-
- public JMenuItem getPopupItem()
- {
- // generating the menu
- JMenu menu = new JMenu(name);
- ActionListener l = new PopUpListener();
-
- menu.add(HITS).addActionListener(l);
- menu.add(DETECTORS).addActionListener(l);
- return menu;
- }
-
- public void connect()
- {
- super.connect();
- if (parameterStore.get("Event", "PickingMode").getI() == 0)
- mode.setSelectedItem(HITS);
- else
- mode.setSelectedItem(DETECTORS);
- }
-
- class PopUpListener implements ActionListener
- {
- public void actionPerformed(ActionEvent e)
- {
- ACanvas.getCanvas().getCurrentWindow().getInteractionToolBar().setSelectedGroup(name);
- mode.setSelectedItem(e.getActionCommand());
- if (e.getActionCommand().equals(HITS))
- parameterStore.get("Event", "PickingMode").setI(0);
- else if (e.getActionCommand().equals(DETECTORS))
- parameterStore.get("Event", "PickingMode").setI(1);
- }
- }
-
- class ModeListener implements ActionListener
- {
- public void actionPerformed(ActionEvent e)
- {
- if (mode.getSelectedItem().equals(HITS))
- parameterStore.get("Event", "PickingMode").setI(0);
- else if (mode.getSelectedItem().equals(DETECTORS))
- parameterStore.get("Event", "PickingMode").setI(1);
- }
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/interactions/APickInteraction.java b/graphics/AtlantisJava/src/atlantis/interactions/APickInteraction.java
deleted file mode 100755
index a12cdce3ee1..00000000000
--- a/graphics/AtlantisJava/src/atlantis/interactions/APickInteraction.java
+++ /dev/null
@@ -1,419 +0,0 @@
-package atlantis.interactions;
-
-import java.awt.Graphics2D;
-import java.awt.Point;
-import java.awt.Rectangle;
-import java.awt.Robot;
-import java.awt.AWTException;
-import java.awt.geom.Point2D;
-import java.awt.event.KeyEvent;
-import javax.swing.SwingUtilities;
-
-import atlantis.list.AList;
-import atlantis.list.AListManager;
-import atlantis.nge.ANManager;
-import atlantis.nge.ANProjectionPhysics;
-import atlantis.output.ALogInterface;
-import atlantis.output.AOutput;
-import atlantis.canvas.ACanvas;
-import atlantis.canvas.AWindow;
-import atlantis.data.ALVL1TriggerTowerData;
-import atlantis.data.AMuonHitData;
-import atlantis.parameters.APar;
-import atlantis.projection.AProjectionNPhysics;
-import atlantis.projection.AProjectionTrackResidual;
-import atlantis.projection.AProjectionsManager;
-import atlantis.event.AData;
-import atlantis.data.AJetData;
-import atlantis.data.ACalorimeterData;
-import atlantis.data.ALArData;
-import atlantis.data.ASVxData;
-import atlantis.data.ARVxData;
-import atlantis.data.ATILEData;
-import atlantis.data.ATrackData;
-import atlantis.graphics.ACursorFactory;
-import atlantis.graphics.APickingGraphics2D;
-import atlantis.utils.AMath;
-
-
-
-public class APickInteraction extends AInteraction implements AMousePressListener, AEnterExitListener
-{
-
- public APickInteraction()
- {
- super(0, NO_REPAINT, SCREEN_COORDINATES, false);
- }
-
-
-
- public int getPressButton()
- {
- return AInteractionsManager.ALL;
- }
-
-
-
- private void showCaloPulseShapePlot(AList picked, boolean withcurve)
- {
- Integer i = APickingGraphics2D.getPickedHitIndex();
- if(i != null)
- {
- ACalorimeterData c = (ACalorimeterData) picked.getSource();
- c.plotPulseShapes(i.intValue(), withcurve);
- }
- }
-
-
-
- private void showTriggerPulseShapePlot(AList picked)
- {
- Integer i = APickingGraphics2D.getPickedHitIndex();
- if(i != null)
- {
- ALVL1TriggerTowerData t = (ALVL1TriggerTowerData) picked.getSource();
- t.plotPulseShapes(i.intValue());
- }
- }
-
-
-
- private void ignorePickedItem(AList picked)
- {
- Integer i = APickingGraphics2D.getPickedHitIndex();
- if(i != null)
- {
- AData d = (AData) picked.getSource();
- String k = d.getStoreGateKey() != null ? ":" + d.getStoreGateKey() : "";
- String m = "\n\n" + d.getNameScreenName() + k + " ID " +
- d.getIdFromIndex(i.intValue()) + " (index " + i.intValue() +
- ") will be invisible and ignored " +
- "(until removed from the Invisible list)";
- AOutput.alwaysAppend(m, ALogInterface.WARNING);
- AListManager.getInstance().addInvisible(picked);
- }
-
- }
-
-
-
- private void showMuonSector(AList picked)
- {
- if(picked.getSource() instanceof AMuonHitData)
- {
- int sector = ((AMuonHitData) picked.getSource()).getSector(picked.getItems()[0]);
- int signRZ = ((AMuonHitData) picked.getSource()).getRZSign(picked.getItems()[0]);
- if(signRZ == -1)
- {
- sector = (sector + 8) % 16;
- }
- parameterStore.get("YZ", "Phi").setD(sector * 22.5);
- window.repaintFromScratch();
- }
- }
-
-
-
- private void showTrackResidualPlot(AList picked)
- {
- AData pickedData = picked.getSource();
- if(pickedData instanceof ATrackData)
- {
- if(((ATrackData)pickedData).getResidualStatus())
- {
- APickingGraphics2D.showTrackResiduals(window,
- (int) APickingGraphics2D.getPickedH(), (int) APickingGraphics2D.getPickedV());
- }
- else
- {
- AOutput.append("\nNo residual information available for this track\n",
- ALogInterface.PICK);
- }
- }
- }
-
- private void showJetView(AList picked)
- {
- AData pickedData = picked.getSource();
- if(pickedData instanceof AJetData){
-
- // Use window "B" to show jets
- String jetWindowName = "B";
- if(!ACanvas.getCanvas().isValidWindowName(jetWindowName))
- {
- AOutput.append("\nWindow " + jetWindowName + " is not available in current layout"
- + "\n", ALogInterface.WARNING);
- }
- else if(window.getName().equals(jetWindowName)){
- AOutput.append("\nPlease select jet view from a window other than window " + jetWindowName, ALogInterface.WARNING);
- }
- else{
- AWindow jetWindow = ACanvas.getCanvas().getWindow(jetWindowName);
-
- //set as NYX to get transition
- AProjectionNPhysics jetProj =
- (AProjectionNPhysics) AProjectionsManager.getProjection("NPhysics");
-
- //setup the projection
- ACanvas.getCanvas().moveToFrontWindow(jetWindowName);
- jetWindow.setProjection(jetProj);
-
- //configure the projection
- jetProj.configureFrame(ANManager.getManager().getFrameManager(jetWindow));
- ANProjectionPhysics finalProj = (ANProjectionPhysics) ANManager.getManager().getFrameManager(jetWindow).getTargetProjection();
-
- AJetData jd = ((AJetData) pickedData);
- int index=picked.getItems()[0];
- finalProj.lookAt(jd, index);
- }
- }
- }
-
-
- /**
- * @param picked AList
- * Check if picked data is SimVertex or RecVertex (RVx) and use the values
- * as Atlantis primary vertex: Projection->eta/phi menu
- */
- private void setAtlantisPrimaryVertex(AList picked)
- {
- Integer i = APickingGraphics2D.getPickedHitIndex();
- AData pickedData = picked.getSource();
- double[] vtx = null;
-
- if(i != null)
- {
- if(pickedData instanceof ARVxData)
- {
- vtx = ((ARVxData) pickedData).getVertex(i.intValue());
- }
- if(pickedData instanceof ASVxData)
- {
- vtx = ((ASVxData) pickedData).getVertex(i.intValue());
- }
-
- if(vtx != null)
- {
- parameterStore.get("Event", "XVtx").setD(vtx[0]);
- parameterStore.get("Event", "YVtx").setD(vtx[1]);
- parameterStore.get("Event", "ZVtx").setD(vtx[2]);
- AOutput.append("\n\nPrimary vertex set: Projection->" +
- AMath.PHI + AMath.ETA + ":\n" +
- " XVtx = " + String.format("%.5f",vtx[0]) + " cm\n" +
- " YVtx = " + String.format("%.5f",vtx[1]) + " cm\n" +
- " ZVtx = " + String.format("%.5f",vtx[2]) + " cm\n",
- ALogInterface.WARNING);
- }
- }
-
- } // setAtlantisPrimaryVertex() -----------------------------------------
-
-
-
- public void pressed(Point2D.Double p, int button, int key)
- {
- Point ps = null;
- Point pw = null;
- int pickingMode = parameterStore.get("Event", "PickingMode").getI();
-
- if(button == AInteractionsManager.LEFT)
- {
- if(key == KeyEvent.VK_C)
- {
- AListManager.getInstance().clearHighlightAndMassCalculation();
- }
- else
- {
- Rectangle bounds = window.getBounds();
- bounds.setLocation(0, 0);
- window.paintWindowFromScratch(new APickingGraphics2D(bounds,
- pickingMode, new Point((int) p.x, (int) p.y)));
-
- // this call prints pick information (calls datatype's getHitInfo())
- if(!(key == KeyEvent.VK_L))
- {
- APickingGraphics2D.printPicked();
- }
- AList picked = APickingGraphics2D.getPickedHit();
-
- if(picked != null && pickingMode == APickingGraphics2D.PICK_HITS_AND_TRACKS)
- {
-
- // highlight by default (not only when key==KeyEvent.VK_H)
- AListManager.getInstance().highlight(picked);
-
- // try to always show calo pulse shapes plot by default
- // if no key modifier is pressed
- if(picked.getSource() instanceof ACalorimeterData &&
- key == KeyEvent.KEY_LOCATION_UNKNOWN)
- {
- showCaloPulseShapePlot(picked, true);
- }
- // 2009-01-19 for LAr only, see comment at
- // the ALArData.plotADCCounts() method
- if(picked.getSource() instanceof ACalorimeterData &&
- key == KeyEvent.VK_D)
- {
- showCaloPulseShapePlot(picked, false);
- }
- if(picked.getSource() instanceof ATILEData &&
- key == KeyEvent.VK_T) {
-
- Integer i = APickingGraphics2D.getPickedHitIndex();
- if (i != null) {
- ATILEData c = (ATILEData) picked.getSource();
- c.plotPulseShapesWithTiming(i.intValue());
- }
- }
- if(picked.getSource() instanceof ALVL1TriggerTowerData &&
- key == KeyEvent.KEY_LOCATION_UNKNOWN)
- {
- showTriggerPulseShapePlot(picked);
- }
-
- if(picked.getSource() instanceof AJetData)
- {
- double phi = ((AJetData) picked.getSource()).getPhi(picked.getItems()[0]);
- parameterStore.get("XZ", "Phi").setD(Math.toDegrees(phi));
- }
-
- switch(key)
- {
- case KeyEvent.VK_A:
- AListManager.getInstance().add(picked);
- break;
- case KeyEvent.VK_S:
- showMuonSector(picked);
- break;
- case KeyEvent.VK_N:
- APickingGraphics2D.navigatePicked();
- break;
- case KeyEvent.VK_R:
- showTrackResidualPlot(picked);
- break;
- case KeyEvent.VK_V:
- setAtlantisPrimaryVertex(picked);
- break;
- case KeyEvent.VK_I:
- ignorePickedItem(picked);
- break;
- case KeyEvent.VK_J:
- if(parameterStore.get("Prefs", "OpenGL").getStatus()){
- showJetView(picked);
- }
- break;
- case KeyEvent.VK_M:
- AListManager.getInstance().massCalc(picked);
- break;
- case KeyEvent.VK_L: // Mass calculation for Neutral Decay scenarios
- AListManager.getInstance().massCalcV0(picked);
- break;
- case KeyEvent.VK_P: // Calculate delta Phi for picked objects
- AListManager.getInstance().deltaR(picked);
- break;
-
-
- } // switch
-
- }
- else if(pickingMode == APickingGraphics2D.PICK_DETECTORS)
- {
- AListManager.getInstance().clearHighlight();
- }
- }
-
- } // if(button == AInteractionsManager.LEFT)
-
- else if(button == AInteractionsManager.RIGHT)
- {
- Rectangle bounds = window.getBounds();
- bounds.setLocation(0, 0);
- window.paintWindowFromScratch(new APickingGraphics2D(bounds, APickingGraphics2D.MOVE,
- new Point((int) p.x, (int) p.y)));
- }
-
- if(pickingMode != APickingGraphics2D.PICK_DETECTORS)
- {
- if(APickingGraphics2D.getPickedData() != null
- || APickingGraphics2D.getPickedResidual() != null)
- {
- /* int numEvents = Atlantis.getEventManager().getNumberOfEvents();
- if(numEvents > 0)
- {
- AOutput.append("\n(" + ++numEvents + " events currently displayed)\n", ALogPane.PICK);
- }*/
-
- //TODO fix to avoid problems with nge
- if(window==null)
- return;
-
- pw = new Point(APickingGraphics2D.getPickedH(), APickingGraphics2D.getPickedV());
- if(pw.x != 0 && pw.y != 0)
- try
- {
- ps = new Point(pw);
- SwingUtilities.convertPointToScreen(ps, window);
- new Robot().mouseMove(ps.x, ps.y);
- }
- catch(AWTException e)
- {}
- else
- {
- AOutput.alwaysAppend("\n\nYou must pick before you can move", ALogInterface.BAD_COMMAND);
- }
- }
- else
- {
- if(!(window.getProjection() instanceof AProjectionTrackResidual))
- AOutput.alwaysAppend("\n\nNothing to pick", ALogInterface.BAD_COMMAND);
- }
- }
-
- } // pressed() ------------------------------------------------------------
-
-
- public void paint(Graphics2D g)
- {}
-
- /**
- * Gets called each time we enter a window in which this interaction is active
- */
- public void entered()
- {
- //Set mouse cursor
- window.setCursor(ACursorFactory.getInstance().getPickCursor());
- }
-
- /**
- * Gets called each time we leave a window in which this interaction is active
- */
- public void exited()
- {
- //Set mouse cursor
- window.setCursor(ACursorFactory.getInstance().getDefaultCursor());
- }
-
- public AModifier[] getModifiers()
- {
- AModifier[] mods = new AModifier[] {
- new AModifier(KeyEvent.VK_UNDEFINED, false, "Pick"),
- new AModifier(KeyEvent.VK_UNDEFINED, true, "Move to last picked"),
- new AModifier(KeyEvent.VK_A, false, "Add to the current (active) list"),
- new AModifier(KeyEvent.VK_C, false, "Clear highlighted and calculation lists"),
- new AModifier(KeyEvent.VK_D, false, "Plot ADC counts (digits) only"),
- new AModifier(KeyEvent.VK_T, false, "Plot raw and cell time pulses (TILE only)"),
- new AModifier(KeyEvent.VK_I, false, "Ignore (make invisible) picked hits/tracks"),
- new AModifier(KeyEvent.VK_L, false, "Add to the V0 mass calculation list"),
- new AModifier(KeyEvent.VK_M, false, "Add to the mass calculation list"),
- new AModifier(KeyEvent.VK_P, false, "Calculate Delta R for 2 tracks"),
- new AModifier(KeyEvent.VK_N, false, "Navigate (show data associations)"),
- new AModifier(KeyEvent.VK_R, false, "Plot track residuals if available"),
- new AModifier(KeyEvent.VK_S, false, "Select this muon Sector"),
- new AModifier(KeyEvent.VK_V, false, "Set prim.vertex from picked rec/sim vertex"),
- new AModifier(KeyEvent.VK_J, false, "Jet view (OpenGL only)")
- };
-
- return mods;
-
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/interactions/APopupListener.java b/graphics/AtlantisJava/src/atlantis/interactions/APopupListener.java
deleted file mode 100755
index f7b462043d6..00000000000
--- a/graphics/AtlantisJava/src/atlantis/interactions/APopupListener.java
+++ /dev/null
@@ -1,16 +0,0 @@
-package atlantis.interactions;
-
-
-import java.awt.Point;
-
-
-/**
- * The interactions implement this listener to get popup trigger events.
- */
-public interface APopupListener {
- int REGION_POPUP=0;
- int WINDOW_POPUP=1;
-
- int getPopupType();
- void showPopup(Point p, int region);
-}
diff --git a/graphics/AtlantisJava/src/atlantis/interactions/ARectangleSelection.java b/graphics/AtlantisJava/src/atlantis/interactions/ARectangleSelection.java
deleted file mode 100755
index 818dd6120b2..00000000000
--- a/graphics/AtlantisJava/src/atlantis/interactions/ARectangleSelection.java
+++ /dev/null
@@ -1,95 +0,0 @@
-package atlantis.interactions;
-
-import java.awt.Graphics2D;
-import java.awt.geom.Point2D;
-
-import atlantis.graphics.ACursorFactory;
-import atlantis.graphics.AGraphics;
-
-public class ARectangleSelection extends ASelection implements AEnterExitListener
-{
- public ARectangleSelection()
- {
- super(4);
- }
-
- public int init(Point2D.Double p, int key)
- {
- isValid = false;
-
- for (int i = 0; i < 4; i++)
- setCenter(hr[i], p.x, p.y);
-
- this.region = 2;
- return region;
- }
-
- public void drag(Point2D.Double p, int region, int key)
- {
- isValid = true;
-
- // Update the active control point.
- setCenter(hr[region], p.x, p.y);
-
- // Get the opposite control point.
- int oppCtrlPt = (region + 2) % 4;
- double xOpp = hr[oppCtrlPt].getCenterX();
- double yOpp = hr[oppCtrlPt].getCenterY();
-
- // Now choose the next control point so that we maintain a
- // clockwise order to the points.
- int otherCtrlPt = ((p.x < xOpp && p.y > yOpp) || (p.x > xOpp && p.y < yOpp)) ? 1 : 3;
-
- otherCtrlPt = (region + otherCtrlPt) % 4;
-
- // Set the other two control points.
- setCenter(hr[otherCtrlPt], p.x, yOpp);
- otherCtrlPt = (otherCtrlPt + 2) % 4;
- setCenter(hr[otherCtrlPt], xOpp, p.y);
- }
-
- public void paint(Graphics2D g)
- {
- if (!isValid)
- return;
-
- AGraphics ag = AGraphics.makeAGraphics(g);
-
- ag.updateDrawParameters(frameDrawParameters);
- ag.drawPolygon(getAPolygon());
- ag.updateDrawParameters(drawParameters);
- ag.drawPolygon(getAPolygon());
- drawActivePoint(region, ag);
- }
-
- public Point2D.Double[] getCorners()
- {
- int first = getUpperLeftRegion();
-
- // Calculate the adjacent partner and the opposite corner.
- int second = (first + 1) % 4;
- int third = (first + 2) % 4;
-
- return convert(first, second, third);
- }
-
- /**
- * Get called each time we enter a window in which this interaction is
- * active
- */
- public void entered()
- {
- // Set mouse cursor
- window.setCursor(ACursorFactory.getInstance().getRectSelectCursor());
- }
-
- /**
- * Get called each time we leave a window in which this interaction is active
- */
- public void exited()
- {
- //Set mouse cursor
- window.setCursor(ACursorFactory.getInstance().getDefaultCursor());
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/interactions/ARectangleVPSelection.java b/graphics/AtlantisJava/src/atlantis/interactions/ARectangleVPSelection.java
deleted file mode 100755
index 8d26e25ff33..00000000000
--- a/graphics/AtlantisJava/src/atlantis/interactions/ARectangleVPSelection.java
+++ /dev/null
@@ -1,524 +0,0 @@
-package atlantis.interactions;
-
-import java.awt.Rectangle;
-import java.awt.event.ActionEvent;
-import java.awt.event.ActionListener;
-import java.awt.geom.Point2D;
-import javax.swing.JMenuItem;
-import java.util.List;
-import java.util.ArrayList;
-
-import atlantis.event.AData;
-import atlantis.event.AEventManager;
-import atlantis.canvas.ACanvas;
-import atlantis.canvas.AWindow;
-import atlantis.data.ACalorimeterData;
-import atlantis.event.AEvent;
-import atlantis.graphics.dnd.ADnDLabel;
-import atlantis.graphics.dnd.ADragListener;
-import atlantis.output.ALogInterface;
-import atlantis.output.AOutput;
-import atlantis.parameters.APar;
-import atlantis.parameters.AParameter;
-import atlantis.projection.AProjection;
-import atlantis.projection.AProjectionFR;
-import atlantis.projection.AProjectionFZ;
-import atlantis.projection.AProjectionRZ;
-import atlantis.projection.AProjectionVP;
-import atlantis.projection.AProjectionXZ;
-import atlantis.projection.AProjectionYX;
-import atlantis.projection.AProjectionYZ;
-import atlantis.utils.AMath;
-import atlantis.utils.A3Vector;
-
-public class ARectangleVPSelection extends ARectangleSelection
- implements ActionListener, ADragListener
-{
-
- public final static String RUBBERBAND_WHOLE_WINDOW = "Rubberband Whole Window";
- public final static String ZOOM_LAR = "Zoom LAr";
- public final static String ZOOM_CALORIMETERS = "Zoom Calorimeters";
- public final static String CUT_ETAPHI = "Cut ( " + AMath.ETA + AMath.PHI + " cut )";
- public final static String PRINT_CONTENTS = "Print Contents";
- public final static String SHOW_IN_3DBOX = "Show in 3DBox";
- public final static String TURN_OFF_ETAPHI_CUT = "Turn off " + CUT_ETAPHI;
-
- private static AEventManager eventManager = AEventManager.instance();
-
- public ARectangleVPSelection()
- {
- super();
-
- addActionButton(ZOOM_LAR, this, this);
- addActionButton(ZOOM_CALORIMETERS, this, this);
- addActionButton(CUT_ETAPHI, this, this);
- addActionButton(RUBBERBAND_WHOLE_WINDOW, this, this);
- addActionButton(PRINT_CONTENTS, this, this);
- addActionButton(SHOW_IN_3DBOX, this, this);
-
- }
-
-
-
- @Override
- public JMenuItem[] getPopupItems()
- {
- ArrayList al = new ArrayList();
- if (window.getUnzoomPossible())
- {
- JMenuItem item = new JMenuItem("Unzoom");
- al.add(item);
- item.addActionListener(new ActionListener()
- {
- public void actionPerformed(ActionEvent e)
- {
- window.unzoom();
- }
- });
- }
- if(window.getUnzoomAllPossible(ZOOM_LAR))
- {
- JMenuItem item = new JMenuItem("Unzoom LAr");
- al.add(item);
- item.addActionListener(new ActionListener()
- {
- public void actionPerformed(ActionEvent e) {
- window.unzoom(ARectangleVPSelection.ZOOM_LAR);
- }
- });
- }
- if(window.getUnzoomAllPossible(ZOOM_CALORIMETERS))
- {
- JMenuItem item = new JMenuItem("Unzoom Calorimeters");
- al.add(item);
- item.addActionListener(new ActionListener()
- {
- public void actionPerformed(ActionEvent e) {
- window.unzoom(ZOOM_CALORIMETERS);
- }
- });
- }
- if (window.getUnzoomFullPossible())
- {
- JMenuItem item = new JMenuItem("Unzoom Full");
- al.add(item);
- item.addActionListener(new ActionListener()
- {
- public void actionPerformed(ActionEvent e)
- {
- window.unzoomFull();
- }
- });
- }
-
- JMenuItem rww = new JMenuItem(RUBBERBAND_WHOLE_WINDOW);
- rww.addActionListener(this);
-
- JMenuItem toec = new JMenuItem(TURN_OFF_ETAPHI_CUT);
- toec.addActionListener(this);
-
- al.add(rww);
- al.add(toec);
-
- // Can't cast arrays very easily...
- JMenuItem[] ret = new JMenuItem[al.size()];
- for (int i = 0; i < al.size(); i++) {
- ret[i] = (JMenuItem)al.get(i);
- }
-
- return ret;
- }
-
-
- public void actionPerformed(ActionEvent e)
- {
- String action = e.getActionCommand();
-
- if(ZOOM_LAR.equals(action))
- {
- performZoom(ZOOM_LAR);
- }
- else if(ZOOM_CALORIMETERS.equals(action))
- {
- performZoom(ZOOM_CALORIMETERS);
- }
- else if(CUT_ETAPHI.equals(action))
- {
- applyCutIn(window.getName());
- }
- else if(RUBBERBAND_WHOLE_WINDOW.equals(action))
- {
- rubberbandWholeWindow();
- }
- else if(PRINT_CONTENTS.equals(action))
- {
- performOperationWithCuts(PRINT_CONTENTS);
- }
- else if(SHOW_IN_3DBOX.equals(action))
- {
- tracksTo3DBox();
- }
- else if(TURN_OFF_ETAPHI_CUT.equals(action))
- {
- turnOffEtaPhiCuts();
- }
-
- }
-
-
- private void turnOffEtaPhiCuts()
- {
- parameterStore.get("CutsATLAS", "CutPhi").setStatus(false);
- parameterStore.get("CutsATLAS", "CutEta").setStatus(false);
- String warning = "\n\nCuts -> ATLAS -> Cut " + AMath.ETA + " deactivated" +
- "\nCuts -> ATLAS -> Cut " + AMath.PHI + " deactivated\n\n";
- AOutput.append(warning, ALogInterface.WARNING);
- ACanvas.getCanvas().repaintAllFromScratch();
-
- }
-
-
-
- private void tracksTo3DBox() {
- Point2D.Double[] corners = getCorners();
- double eta = (corners[2].x + corners[0].x) / 2.;
- double phi = Math.toRadians((corners[2].y + corners[0].y) / 2.);
-
- A3Vector ray = A3Vector.fromEtaPhiR(eta, phi, 1.0);
-
- // Need to make sure we change existing 3DBoxes
- parameterStore.get("3D", "xAxis").changeScope(AParameter.GLOBAL);
- parameterStore.get("3D", "yAxis").changeScope(AParameter.GLOBAL);
- parameterStore.get("3D", "zAxis").changeScope(AParameter.GLOBAL);
- parameterStore.get("3D", "xAxis").setD(ray.x);
- parameterStore.get("3D", "yAxis").setD(ray.y);
- parameterStore.get("3D", "zAxis").setD(ray.z);
-
- // 3DBoxes can be anywhere on the screen:
- ACanvas.getCanvas().repaintAllFromScratch();
- }
-
-
- public void dragPerformed(Object from, Object to, int action)
- {
- if (to instanceof ADnDLabel)
- {
- applyCutIn(((ADnDLabel) to).getText());
- }
- else if (to instanceof AWindow)
- {
- applyCutIn(((AWindow) to).getName());
- }
- }
-
-
-
- private boolean checkEtaPhiCutValues(double eta, double phi,
- double cutPhi, double cutEta)
- {
- if (!(parameterStore.get("CutsATLAS", "PhiMiddle").validateValue(phi) &&
- parameterStore.get("CutsATLAS", "EtaMiddle").validateValue(eta) &&
- parameterStore.get("CutsATLAS", "CutPhi").validateValue(cutPhi) &&
- parameterStore.get("CutsATLAS", "CutEta").validateValue(cutEta)))
- {
- String etaphi = AMath.ETA + AMath.PHI;
- AOutput.append("\nOperation cancelled: " + etaphi +
- " cut values outside allowed range\n", ALogInterface.WARNING);
- return false;
-
- }
- else
- {
- return true;
- }
-
- }
-
-
-
- public void applyCutIn(String zoomWindowName)
- {
- Point2D.Double[] corners = getCorners();
- double eta = (corners[2].x + corners[0].x) / 2.;
- double cutEta = Math.abs((corners[2].x - corners[0].x)) / 2.;
- double phi = (corners[2].y + corners[0].y) / 2.;
- double cutPhi = Math.abs((corners[2].y - corners[0].y)) / 2.;
- double rhoVPlot = AProjectionVP.getRhoZoomVPlot();
- double zVPlot = AProjectionVP.getZZoomVPlot();
- double zVtx = parameterStore.get("Event", "ZVtx").getD();
- double zLower = Math.max(Math.min(rhoVPlot * AMath.tanLambda(eta - cutEta) + zVtx, 0.), -zVPlot);
- double zUpper = Math.min(Math.max(rhoVPlot * AMath.tanLambda(eta + cutEta) + zVtx, 0.), zVPlot);
-
- if(! checkEtaPhiCutValues(eta, phi, cutPhi, cutEta))
- {
- return;
- }
-
- String currentWindowName = window.getName();
-
- parameterStore.selectWindowParameters(zoomWindowName);
- parameterStore.get("CutsATLAS", "PhiMiddle").setD(phi);
- parameterStore.get("CutsATLAS", "EtaMiddle").setD(eta);
- parameterStore.get("CutsATLAS", "CutPhi").setD(cutPhi);
- parameterStore.get("CutsATLAS", "CutPhi").setStatus(true);
- parameterStore.get("CutsATLAS", "CutEta").setD(cutEta);
- parameterStore.get("CutsATLAS", "CutEta").setStatus(true);
-
- String warning = "\n\nCuts -> ATLAS -> Cut " + AMath.ETA + " now active" +
- "\nCuts -> ATLAS -> Cut " + AMath.PHI + " now active\n\n";
- AOutput.append(warning, ALogInterface.WARNING);
-
- AWindow zoomWindow = ACanvas.getCanvas().getWindow(zoomWindowName);
- AProjection zoomProjection = zoomWindow.getProjection();
-
- if (zoomProjection instanceof AProjectionFR)
- {
- zoomWindow.setUserCorners(0., rhoVPlot, phi - cutPhi, phi + cutPhi);
- }
- else if (zoomProjection instanceof AProjectionFZ)
- {
- zoomWindow.setUserCorners(zLower, zUpper, phi - cutPhi, phi + cutPhi);
- }
- else if (zoomProjection instanceof AProjectionVP)
- {
- if (!zoomWindowName.equals(currentWindowName))
- zoomWindow.setUserCorners(eta - cutEta, eta + cutEta, phi - cutPhi, phi + cutPhi);
- }
- else if (zoomProjection instanceof AProjectionYX)
- {
- zoomWindow.setUserCorners(-rhoVPlot, rhoVPlot, -rhoVPlot, rhoVPlot);
- }
- else if (zoomProjection instanceof AProjectionXZ)
- {
- double rhoZoom = Math.min(rhoVPlot, 110.);
-
- zoomWindow.setUserCorners(zLower, zUpper, 0., rhoZoom);
- parameterStore.get("XZ", "Phi").setD(AMath.nearestPhiDegrees(phi));
- }
- else if (zoomProjection instanceof AProjectionYZ)
- {
- double rhoZoom = Math.min(rhoVPlot, 110.);
-
- zoomWindow.setUserCorners(zLower, zUpper, -rhoZoom, rhoZoom);
- parameterStore.get("YZ", "Phi").setD(AMath.nearestPhiDegrees(phi));
- }
- else if (zoomProjection instanceof AProjectionRZ)
- {
- zoomWindow.setUserCorners(zLower, zUpper, 0., rhoVPlot);
- parameterStore.get("RZ", "Phi").setD(AMath.nearestPhiDegrees(phi));
- }
- parameterStore.restoreWindowParameters();
-
- // don't repaint just the current window after cut(s) are applied,
- // but repaint everything (all windows)
- // zoomWindow.repaintFromScratch();
- ACanvas.getCanvas().repaintAllFromScratch();
-
- }
-
- public void performZoom(String typeOfZoom)
- {
- int numberOfWindows=0;
-
- if(ZOOM_LAR.equals(typeOfZoom))
- {
- numberOfWindows = 4;
- }
- else if(ZOOM_CALORIMETERS.equals(typeOfZoom))
- {
- numberOfWindows = 8;
- }
-
- AWindow currentWindow = window;
- String name = currentWindow.getName();
- currentWindow.saveLayout();
- boolean scaleStatus = currentWindow.getScaleStatus();
- Point2D.Double[] zoomedCorners = getCorners();
- layoutChange(typeOfZoom);
- int nameIndex=-1;
- for (int i = 0; i < numberOfWindows; i++)
- {
- String wName = Integer.toString(i + 1);
- AWindow w = ACanvas.getCanvas().getWindow(wName);
- //dont zoom current window as will not save corners correctly
- if (w != null && !name.equals(wName))
- {
- w.saveParameters(typeOfZoom);
- ACanvas.getCanvas().copyWindowSettings(currentWindow.getName(), wName);
- w.saveCorners(typeOfZoom);
- w.setUserCorners(zoomedCorners);
- w.setScaleStatus(scaleStatus);
- parameterStore.selectWindowParameters(wName);
- parameterStore.get("VP", "Mode").setI(AProjectionVP.MODE_ECAL_LAYER_0 + i);
- parameterStore.restoreWindowParameters();
- ACanvas.getCanvas().moveToFrontWindow(w.getName());
- w.repaintFromScratch();
- }
- else if(name.equals(wName))
- {
- nameIndex=i;
- }
- }
- //now do zoom of current window if needed
- if(nameIndex>0)
- {
- currentWindow.saveParameters(typeOfZoom);
- currentWindow.saveCorners(typeOfZoom);
- currentWindow.setUserCorners(zoomedCorners);
- currentWindow.setScaleStatus(scaleStatus);
- parameterStore.selectWindowParameters(name);
- parameterStore.get("VP", "Mode").setI(AProjectionVP.MODE_ECAL_LAYER_0 + nameIndex);
- parameterStore.restoreWindowParameters();
- ACanvas.getCanvas().moveToFrontWindow(name);
- currentWindow.repaintFromScratch();
- }
- for (int i = 0; i < numberOfWindows; i++)
- if (name.equals(Integer.toString(i + 1)))
- invalidate();
- }
-
- public void layoutChange(String typeOfZoom)
- {
- // change layout
- if(!ACanvas.getCanvas().getCurrentLayout().getName().equals("SQUARE"))
- {
- ACanvas.getCanvas().setCurrentLayout("SQUARE");
- }
-
- // print info message
- AOutput.append("\nWindows changed to: \n",ALogInterface.TITLE);
- AOutput.append("Window 1: ECAL sampling 0\n",ALogInterface.NORMAL);
- AOutput.append("Window 2: ECAL sampling 1\n",ALogInterface.NORMAL);
- AOutput.append("Window 3: ECAL sampling 2\n",ALogInterface.NORMAL);
- AOutput.append("Window 4: ECAL sampling 3\n",ALogInterface.NORMAL);
-
- if(ZOOM_CALORIMETERS.equals(typeOfZoom))
- {
- AOutput.append("Window 5: HCAL sampling 0\n",ALogInterface.NORMAL);
- AOutput.append("Window 6: HCAL sampling 1\n",ALogInterface.NORMAL);
- AOutput.append("Window 7: HCAL sampling 2\n",ALogInterface.NORMAL);
- AOutput.append("Window 8: HCAL sampling 3\n",ALogInterface.NORMAL);
- }
- }
-
-
- private void printContents()
- {
- // get all data within selection (eta/phi cut already applied)
- AEvent event = eventManager.getCurrentEvent();
- StringBuffer output = new StringBuffer("Data inside Rubberband selection:");
- // hits and tracks first
- List hitsAndTracks = event.getHitsAndTracks(window.getProjection());
- for(int i = 0; i < hitsAndTracks.size(); i++)
- {
- String info = ((AData) hitsAndTracks.get(i)).getVPHitInfo();
- if(! "".equals(info))
- {
- output.append("\n" + info);
- }
- }
-
- // calorimeters (as they are handled differently)
- List cal = event.getCalorimeters();
- for (int i = 0; i < cal.size(); i++)
- {
- ACalorimeterData calorimeter = (ACalorimeterData) cal.get(i);
- calorimeter.makeDrawList();
- String info = calorimeter.getVPHitInfo();
- if(! "".equals(info))
- {
- output.append("\n" + info);
- }
- }
-
- AOutput.alwaysAppend("\n" + output + "\n", ALogInterface.PICK);
-
- }
-
-
-
- /**
- * Apply eta phi cuts based on the selected (rubberband region), then
- * perform the desired operation with data in the selection and
- * restore previous cuts settings.
- */
- private void performOperationWithCuts(String operation)
- {
- // which corners fall into eta/phi rubberband selection
- Point2D.Double[] corners = getCorners();
- double eta = (corners[2].x + corners[0].x) / 2.;
- double cutEta = Math.abs((corners[2].x - corners[0].x)) / 2.;
- double phi = (corners[2].y + corners[0].y) / 2.;
- double cutPhi = Math.abs((corners[2].y - corners[0].y)) / 2.;
-
- if(! checkEtaPhiCutValues(eta, phi, cutPhi, cutEta))
- {
- return;
- }
-
- // need to temporarily apply eta/phi cut, but get the current
- // eta/phi cut values first and save them
- AParameter phiPar = parameterStore.get("CutsATLAS", "PhiMiddle");
- AParameter cutPhiPar = parameterStore.get("CutsATLAS", "CutPhi");
- AParameter etaPar = parameterStore.get("CutsATLAS", "EtaMiddle");
- AParameter cutEtaPar = parameterStore.get("CutsATLAS", "CutEta");
- double oldEta = etaPar.getD();
- double oldCutEta = cutEtaPar.getD();
- boolean oldCutEtaStatus = cutEtaPar.getStatus();
- double oldPhi = phiPar.getD();
- double oldCutPhi = cutPhiPar.getD();
- boolean oldCutPhiStatus = cutPhiPar.getStatus();
-
- // set new (temporary) values of eta/phi cuts according to selection
- phiPar.setD(phi);
- etaPar.setD(eta);
- cutPhiPar.setD(cutPhi);
- cutPhiPar.setStatus(true);
- cutEtaPar.setD(cutEta);
- cutEtaPar.setStatus(true);
-
- if(PRINT_CONTENTS.equals(operation))
- {
- printContents();
- }
-
- // set back the previous eta/phi cut values
- phiPar.setD(oldPhi);
- etaPar.setD(oldEta);
- cutPhiPar.setD(oldCutPhi);
- cutPhiPar.setStatus(oldCutPhiStatus);
- cutEtaPar.setD(oldCutEta);
- cutEtaPar.setStatus(oldCutEtaStatus);
-
- } // printContents() ----------------------------------------------------
-
-
-
- public void rubberbandWholeWindow()
- {
- Rectangle curr = window.getCurrDisp();
-
- double x = curr.getX();
- double y = curr.getY();
- double w = curr.getWidth();
- double h = curr.getHeight();
-
- setCenter(hr[0], x, y);
- setCenter(hr[1], x + w, y);
- setCenter(hr[2], x + w, y + h);
- setCenter(hr[3], x, y + h);
- isValid = true;
- region = 1;
- stop();
- window.repaint();
- oldAffectedRegion = curr;
- int safetySize = 5;
-
- oldAffectedRegion.x -= safetySize;
- oldAffectedRegion.y -= safetySize;
- oldAffectedRegion.width += 2 * safetySize;
- oldAffectedRegion.height += 2 * safetySize;
-
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/interactions/ARectangleYXSelection.java b/graphics/AtlantisJava/src/atlantis/interactions/ARectangleYXSelection.java
deleted file mode 100755
index 0a01c70592c..00000000000
--- a/graphics/AtlantisJava/src/atlantis/interactions/ARectangleYXSelection.java
+++ /dev/null
@@ -1,320 +0,0 @@
-package atlantis.interactions;
-
-import java.awt.event.ActionEvent;
-import java.awt.event.ActionListener;
-import java.awt.geom.Point2D;
-import java.util.ArrayList;
-
-import javax.swing.JMenuItem;
-
-import atlantis.canvas.ACanvas;
-import atlantis.canvas.AWindow;
-import atlantis.graphics.dnd.ADragListener;
-import atlantis.output.ALogInterface;
-import atlantis.output.AOutput;
-import atlantis.parameters.APar;
-import atlantis.parameters.AParameter;
-import atlantis.projection.AProjection;
-import atlantis.projection.AProjectionYX;
-import atlantis.projection.AProjectionsManager;
-
-/**
- * Contains the function for selecting zoom endcap layers and summed endcaps
- *
- * @author Mark Stockton
- */
-public class ARectangleYXSelection extends ARectangleSelection implements ActionListener, ADragListener
-{
- public final static String ZOOM_SUMMED = "summed";
- public final static String ZOOM_LAYERS = "layers";
-
- public ARectangleYXSelection()
- {
- super();
- addActionButton("Zoom Summed Endcaps", new ActionListener()
- {
- public void actionPerformed(ActionEvent e)
- {
- if (e.getActionCommand().equals("Zoom Summed Endcaps"))
- performZoom(ZOOM_SUMMED);
- }
- });
- addActionButton("Zoom Endcap Layers -", new ActionListener()
- {
- public void actionPerformed(ActionEvent e)
- {
- if (e.getActionCommand().equals("Zoom Endcap Layers -"))
- zoomLayersMinus();
- }
- });
- addActionButton("Zoom Endcap Layers +", new ActionListener()
- {
- public void actionPerformed(ActionEvent e)
- {
- if (e.getActionCommand().equals("Zoom Endcap Layers +"))
- zoomLayersPlus();
- }
- });
- addActionButton("Zoom Both Endcap Layers", new ActionListener()
- {
- public void actionPerformed(ActionEvent e)
- {
- if (e.getActionCommand().equals("Zoom Both Endcap Layers"))
- zoomLayersCombined();
- }
- });
- }
-
- public void zoomLayersMinus()
- {
- parameterStore.get("CutsCalo", "FCAL").setI(0);
- parameterStore.get("CutsCalo", "LAr").setI(0);
- parameterStore.get("CutsCalo", "HEC").setI(-2);
- performZoom(ZOOM_LAYERS);
- }
-
- public void zoomLayersPlus()
- {
- parameterStore.get("CutsCalo", "FCAL").setI(1);
- parameterStore.get("CutsCalo", "LAr").setI(1);
- parameterStore.get("CutsCalo", "HEC").setI(2);
- performZoom(ZOOM_LAYERS);
- }
-
- public void zoomLayersCombined()
- {
- parameterStore.get("CutsCalo", "FCAL").setI(-1);
- parameterStore.get("CutsCalo", "LAr").setI(-1);
- parameterStore.get("CutsCalo", "HEC").setI(-1);
- performZoom(ZOOM_LAYERS);
- }
-
- public void performZoom(String typeOfZoom)
- {
- int numberOfWindows=0;
- if(typeOfZoom.equals(ZOOM_SUMMED))
- numberOfWindows=4;
- else if(typeOfZoom.equals(ZOOM_LAYERS))
- numberOfWindows=8;
-
- AWindow currentWindow = window;
- String name = currentWindow.getName();
- currentWindow.saveLayout();
- boolean scaleStatus = currentWindow.getScaleStatus();
- Point2D.Double[] zoomedCorners = getCorners();
- //change layout and print info message
- layoutChange(typeOfZoom);
- int nameIndex=-1;
- for (int i = numberOfWindows; i >=1; i--)
- {
- String wName = Integer.toString(i);
- AWindow w = ACanvas.getCanvas().getWindow(wName);
- //dont zoom current window as will not save corners correctly
- if (w != null && !name.equals(wName))
- {
- w.saveParameters(typeOfZoom);
- ACanvas.getCanvas().copyWindowSettings(currentWindow.getName(), wName);
- w.saveCorners(typeOfZoom);
- w.setUserCorners(zoomedCorners);
- w.setScaleStatus(scaleStatus);
- parameterStore.selectWindowParameters(wName);
-
- if(typeOfZoom.equals(ZOOM_SUMMED))
- zoomSummedOptions(i-1);
- else if(typeOfZoom.equals(ZOOM_LAYERS))
- parameterStore.get("YX", "Mode").setI(AProjectionYX.MODE_LAR_ENDCAP_PRESAMPLER + i -1);
-
- parameterStore.restoreWindowParameters();
- ACanvas.getCanvas().moveToFrontWindow(w.getName());
- w.repaintFromScratch();
- }
- else if(name.equals(wName))
- {
- nameIndex=i;
- }
- }
- //now do zoom of current window if needed
- if(nameIndex>0)
- {
- currentWindow.saveParameters(typeOfZoom);
- currentWindow.saveCorners(typeOfZoom);
- currentWindow.setUserCorners(zoomedCorners);
- currentWindow.setScaleStatus(scaleStatus);
- parameterStore.selectWindowParameters(name);
- if(typeOfZoom.equals(ZOOM_SUMMED))
- zoomSummedOptions(nameIndex-1);
- else if(typeOfZoom.equals(ZOOM_LAYERS))
- parameterStore.get("YX", "Mode").setI(AProjectionYX.MODE_LAR_ENDCAP_PRESAMPLER + nameIndex -1);
- parameterStore.restoreWindowParameters();
- ACanvas.getCanvas().moveToFrontWindow(name);
- currentWindow.repaintFromScratch();
- }
- for (int i = 1; i <= numberOfWindows; i++)
- if (name.equals(Integer.toString(i)))
- invalidate();
- //if doing layers zoom last window shows rhoZ view
- if(typeOfZoom.equals(ZOOM_LAYERS))
- zoomLastWindow(scaleStatus, name);
- }
-
- public void layoutChange(String typeOfZoom)
- {
- if(typeOfZoom.equals(ZOOM_SUMMED))
- {
- //change layout
- if(!ACanvas.getCanvas().getCurrentLayout().getName().equals("FOUR SQUARES"))
- ACanvas.getCanvas().setCurrentLayout("FOUR SQUARES");
- //print info message
- AOutput.append("\nWindows changed to:\n",ALogInterface.TITLE);
- AOutput.append("Window 1: LAr Endcap -\n",ALogInterface.NORMAL);
- AOutput.append("Window 2: LAr Endcap +\n",ALogInterface.NORMAL);
- AOutput.append("Window 3: HEC -\n",ALogInterface.NORMAL);
- AOutput.append("Window 4: HEC +\n",ALogInterface.NORMAL);
- }
- else if(typeOfZoom.equals(ZOOM_LAYERS))
- {
- //change layout
- if(!ACanvas.getCanvas().getCurrentLayout().getName().equals("SQUARE"))
- ACanvas.getCanvas().setCurrentLayout("SQUARE");
- //print info message
- AOutput.append("\nWindows changed to:\n",ALogInterface.TITLE);
- AOutput.append("Window 1: LAr Endcap Presampler\n",ALogInterface.NORMAL);
- AOutput.append("Window 2: LAr Endcap 1\n",ALogInterface.NORMAL);
- AOutput.append("Window 3: LAr Endcap 2\n",ALogInterface.NORMAL);
- AOutput.append("Window 4: LAr Endcap 3\n",ALogInterface.NORMAL);
- AOutput.append("Window 5: HEC 1\n",ALogInterface.NORMAL);
- AOutput.append("Window 6: HEC 2\n",ALogInterface.NORMAL);
- AOutput.append("Window 7: HEC 3\n",ALogInterface.NORMAL);
- AOutput.append("Window 8: HEC 4\n",ALogInterface.NORMAL);
- AOutput.append("Window 9: rhoZ view showing both endcaps\n",ALogInterface.NORMAL);
- }
- }
-
- public void zoomSummedOptions(int i)
- {
- parameterStore.get("CutsCalo", "LAr").changeScope(AParameter.LOCAL);
- parameterStore.get("CutsCalo", "HEC").changeScope(AParameter.LOCAL);
- switch (i)
- {
- case 0:
- parameterStore.get("CutsCalo", "LAr").setI(0);
- parameterStore.get("CutsCalo", "HEC").setI(-1);
- break;
- case 1:
- parameterStore.get("CutsCalo", "LAr").setI(1);
- parameterStore.get("CutsCalo", "HEC").setI(-1);
- break;
- case 2:
- parameterStore.get("CutsCalo", "LAr").setI(-1);
- parameterStore.get("CutsCalo", "HEC").setI(-2);
- break;
- case 3:
- parameterStore.get("CutsCalo", "LAr").setI(-1);
- parameterStore.get("CutsCalo", "HEC").setI(2);
- break;
- }
- parameterStore.get("YX", "Mode").setI(AProjectionYX.MODE_LAR_ENDCAP_SUMMED + (int) Math.floor(i/2));
- }
-
- public void zoomLastWindow(boolean scaleStatus, String name)
- {
- String wName = Integer.toString(9);
- AWindow w = ACanvas.getCanvas().getWindow(wName);
- //want last window to be RZ view but won't change its zoom
- AProjection p = AProjectionsManager.getProjection("RZ");
- w.setProjection(p);
- Point2D.Double[] newCorners = new Point2D.Double[3];
- //FIXME hardcoded geometry of endcaps
- //set region to be round the endcaps
- newCorners[0]=new Point2D.Double(-650.0, 225);
- newCorners[1]=new Point2D.Double(650.0, 225);
- newCorners[2]=new Point2D.Double(650.0, -225);
-
- w.setUserCorners(newCorners);
- w.setScaleStatus(scaleStatus);
- parameterStore.selectWindowParameters(wName);
- parameterStore.restoreWindowParameters();
- ACanvas.getCanvas().moveToFrontWindow(w.getName());
- w.repaintFromScratch();
- if (name.equals(wName))
- invalidate();
- }
-
- public void dragPerformed(Object from, Object to, int action)
- {}
-
- public JMenuItem[] getPopupItems() {
- ArrayList al = new ArrayList();
- if(window.getUnzoomPossible())
- {
- JMenuItem it = new JMenuItem("Unzoom");
- it.addActionListener(new ActionListener()
- {
- public void actionPerformed(ActionEvent e)
- {
- window.unzoom();
- }
- });
- al.add(it);
- }
- if(window.getUnzoomAllPossible(ZOOM_LAYERS))
- {
- JMenuItem it = new JMenuItem("Unzoom layers");
- it.addActionListener(new ActionListener()
- {
- public void actionPerformed(ActionEvent e)
- {
- window.unzoom(ZOOM_LAYERS);
- }
- });
- al.add(it);
- }
- if(window.getUnzoomAllPossible(ZOOM_SUMMED))
- {
- JMenuItem it = new JMenuItem("Unzoom summed");
- it.addActionListener(new ActionListener()
- {
- public void actionPerformed(ActionEvent e)
- {
- window.unzoom(ZOOM_SUMMED);
- }
- });
- al.add(it);
- }
- if (window.getUnzoomFullPossible())
- {
- JMenuItem it = new JMenuItem("Unzoom Full");
- it.addActionListener(new ActionListener()
- {
- public void actionPerformed(ActionEvent e)
- {
- window.unzoomFull();
- }
- });
- al.add(it);
- }
- // Can't cast arrays very easily...
- JMenuItem[] ret = new JMenuItem[al.size()];
- for(int i = 0; i < al.size(); i++)
- {
- ret[i] = (JMenuItem) (al.get(i));
- }
- return ret;
- }
-
- public void actionPerformed(ActionEvent e) {
- String action=e.getActionCommand();
- if(action.equals("Unzoom")) {
- window.unzoom();
- }
- if(action.equals("Unzoom layers")) {
- window.unzoom(ZOOM_LAYERS);
- }
- if(action.equals("Unzoom summed")) {
- window.unzoom(ZOOM_SUMMED);
- }
- if(action.equals("Unzoom Full")) {
- window.unzoomFull();
- }
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/interactions/ARotatedRectangleSelection.java b/graphics/AtlantisJava/src/atlantis/interactions/ARotatedRectangleSelection.java
deleted file mode 100755
index 3cf0fd33bbe..00000000000
--- a/graphics/AtlantisJava/src/atlantis/interactions/ARotatedRectangleSelection.java
+++ /dev/null
@@ -1,211 +0,0 @@
-package atlantis.interactions;
-
-
-import java.awt.*;
-import java.awt.geom.*;
-
-
-public class ARotatedRectangleSelection extends ASelection {
-
- // The initial starting width of the first and last sides.
- private final static int STARTING_WIDTH=25;
-
- public ARotatedRectangleSelection() {
- super(6);
- }
-
- // Initialize the control points given the starting point (x,y).
- public int init(Point2D.Double p, int key) {
- isValid=false;
-
- setCenter(hr[0], p.x-STARTING_WIDTH, p.y);
- setCenter(hr[1], p.x-STARTING_WIDTH, p.y);
- setCenter(hr[2], p.x+STARTING_WIDTH, p.y);
- setCenter(hr[3], p.x+STARTING_WIDTH, p.y);
- setCenter(hr[4], p.x, p.y);
- setCenter(hr[5], p.x, p.y);
-
- region=5;
- return region;
- }
-
- public void drag(Point2D.Double p, int region, int key) {
- isValid=true;
- double dx, dy, deltax, deltay, angle, radius;
-
- switch(region) {
- case 0:
- radius=getRadius(p.x, p.y, 4);
- angle=getAngle();
-
- deltax=p.x-hr[4].getCenterX();
- deltay=p.y-hr[4].getCenterY();
-
- dx=-Math.round(radius*Math.sin(angle));
- dy=Math.round(radius*Math.cos(angle));
-
- if(deltax*dx+deltay*dy<0) {
- dx=-dx;
- dy=-dy;
- }
-
- setCenter(hr[0], hr[4].getCenterX()+dx, hr[4].getCenterY()+dy);
- setCenter(hr[3], hr[4].getCenterX()-dx, hr[4].getCenterY()-dy);
- setCenter(hr[1], hr[5].getCenterX()+dx, hr[5].getCenterY()+dy);
- setCenter(hr[2], hr[5].getCenterX()-dx, hr[5].getCenterY()-dy);
- break;
-
- case 1:
- radius=getRadius(p.x, p.y, 5);
- angle=getAngle();
-
- deltax=p.x-hr[5].getCenterX();
- deltay=p.y-hr[5].getCenterY();
-
- dx=-Math.round(radius*Math.sin(angle));
- dy=Math.round(radius*Math.cos(angle));
-
- if(deltax*dx+deltay*dy<0) {
- dx=-dx;
- dy=-dy;
- }
-
- setCenter(hr[0], hr[4].getCenterX()+dx, hr[4].getCenterY()+dy);
- setCenter(hr[3], hr[4].getCenterX()-dx, hr[4].getCenterY()-dy);
- setCenter(hr[1], hr[5].getCenterX()+dx, hr[5].getCenterY()+dy);
- setCenter(hr[2], hr[5].getCenterX()-dx, hr[5].getCenterY()-dy);
- break;
-
- case 2:
- radius=getRadius(p.x, p.y, 5);
- angle=getAngle();
-
- deltax=p.x-hr[5].getCenterX();
- deltay=p.y-hr[5].getCenterX();
-
- dx=-Math.round(radius*Math.sin(angle));
- dy=Math.round(radius*Math.cos(angle));
-
- if(deltax*dx+deltay*dy<0) {
- dx=-dx;
- dy=-dy;
- }
-
- setCenter(hr[0], hr[4].getCenterX()-dx, hr[4].getCenterY()-dy);
- setCenter(hr[3], hr[4].getCenterX()+dx, hr[4].getCenterY()+dy);
- setCenter(hr[1], hr[5].getCenterX()-dx, hr[5].getCenterY()-dy);
- setCenter(hr[2], hr[5].getCenterX()+dx, hr[5].getCenterY()+dy);
- break;
-
- case 3:
- radius=getRadius(p.x, p.y, 4);
- angle=getAngle();
-
- deltax=p.x-hr[4].getCenterX();
- deltay=p.y-hr[4].getCenterY();
-
- dx=-Math.round(radius*Math.sin(angle));
- dy=Math.round(radius*Math.cos(angle));
-
- if(deltax*dx+deltay*dy<0) {
- dx=-dx;
- dy=-dy;
- }
-
- setCenter(hr[0], hr[4].getCenterX()-dx, hr[4].getCenterY()-dy);
- setCenter(hr[3], hr[4].getCenterX()+dx, hr[4].getCenterY()+dy);
- setCenter(hr[1], hr[5].getCenterX()-dx, hr[5].getCenterY()-dy);
- setCenter(hr[2], hr[5].getCenterX()+dx, hr[5].getCenterY()+dy);
- break;
-
- case 4:
- case 5:
- radius=getRadius(hr[0].getCenterX(), hr[0].getCenterY(), 4);
-
- // Update the active control point.
- setCenter(hr[region], p.x, p.y);
- angle=getAngle();
-
- dx=-Math.round(radius*Math.sin(angle));
- dy=Math.round(radius*Math.cos(angle));
-
- setCenter(hr[0], hr[4].getCenterX()+dx, hr[4].getCenterY()+dy);
- setCenter(hr[3], hr[4].getCenterX()-dx, hr[4].getCenterY()-dy);
- setCenter(hr[1], hr[5].getCenterX()+dx, hr[5].getCenterY()+dy);
- setCenter(hr[2], hr[5].getCenterX()-dx, hr[5].getCenterY()-dy);
- break;
- }
- }
-
- private double getAngle() {
- double deltax=hr[5].getCenterX()-hr[4].getCenterX();
- double deltay=hr[5].getCenterY()-hr[4].getCenterY();
-
- if(deltax!=0||deltay!=0)
- return Math.atan2(deltay, deltax);
- else
- return 0.;
- }
-
- public void paint(Graphics2D g) {
- paintStandard(g);
- }
-
- /**
- * Make the affine transform which corresponds to this rectangular selection.
- */
- public Point2D.Double[] getCorners() {
- int first=getUpperLeftRegion();
-
- // Calculate the index of the opposite corner.
- int third=(first+2)%4;
-
- // Now use the cross-product to determine which of the
- // remaining points is the one which keep the path going
- // clockwise.
- int second=(first+1)%4;
- double dx0=hr[third].getCenterX()-hr[first].getCenterX();
- double dy0=hr[third].getCenterY()-hr[first].getCenterY();
- double dx1=hr[second].getCenterX()-hr[first].getCenterX();
- double dy1=hr[second].getCenterY()-hr[first].getCenterY();
-
- if(dx0*dy1-dy0*dx1>0)
- second=(first+3)%4;
- // Get the appropriate radius.
- int centerIndex=(first==0||first==3)?4:5;
- double radius=getRadius(hr[first].getCenterX(), hr[first].getCenterY(), centerIndex);
- double angle=getAngle();
- // Calculate the delta-x and delta-y for the points.
- double dx=Math.abs(radius*Math.sin(angle));
- double dy=Math.abs(radius*Math.cos(angle));
- // Get the sign of the offsets from the control points.
- double sdx;
- double sdy;
-
- // The point closest to the origin.
- centerIndex=(first==0||first==3)?4:5;
- sdx=((hr[first].getCenterX()-hr[centerIndex].getCenterX())>0)?1.:-1.;
- sdy=((hr[first].getCenterY()-hr[centerIndex].getCenterY())>0)?1.:-1.;
- double x0=hr[centerIndex].getCenterX()+sdx*dx;
- double y0=hr[centerIndex].getCenterY()+sdy*dy;
-
- // The next point clockwise.
- centerIndex=(second==0||second==3)?4:5;
- sdx=((hr[second].getCenterX()-hr[centerIndex].getCenterX())>0)?1.:-1.;
- sdy=((hr[second].getCenterY()-hr[centerIndex].getCenterY())>0)?1.:-1.;
- double x1=hr[centerIndex].getCenterX()+sdx*dx;
- double y1=hr[centerIndex].getCenterY()+sdy*dy;
-
- // The next point clockwise.
- centerIndex=(third==0||third==3)?4:5;
- sdx=((hr[third].getCenterX()-hr[centerIndex].getCenterX())>0)?1.:-1.;
- sdy=((hr[third].getCenterY()-hr[centerIndex].getCenterY())>0)?1.:-1.;
- double x2=hr[centerIndex].getCenterX()+sdx*dx;
- double y2=hr[centerIndex].getCenterY()+sdy*dy;
-
- // The control points are in the correct order, so we can just
- // call the utility function of the parent.
- return convert(x0, y0, x1, y1, x2, y2);
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/interactions/ARubberbandGroup.java b/graphics/AtlantisJava/src/atlantis/interactions/ARubberbandGroup.java
deleted file mode 100755
index fe8e54b62bd..00000000000
--- a/graphics/AtlantisJava/src/atlantis/interactions/ARubberbandGroup.java
+++ /dev/null
@@ -1,109 +0,0 @@
-package atlantis.interactions;
-
-import atlantis.canvas.ACanvas;
-import atlantis.output.AExceptionHandler;
-
-import java.awt.event.ActionEvent;
-import java.awt.event.ActionListener;
-import javax.swing.JMenuItem;
-import javax.swing.JMenu;
-import javax.swing.JComboBox;
-import javax.swing.JPanel;
-
-import java.lang.reflect.Constructor;
-import java.util.HashMap;
-
-public class ARubberbandGroup extends AInteractionGroup {
-
- private final static String[] RUBBERBAND_NAMES= {"Rectangle", "RotatedRectangle", "Parallelogram",
- "Square", "XSkew", "YSkew", "XSlice", "YSlice"};
-
- private HashMap rubberbands;
- private JComboBox rbComboBox;
- // the panel that will contain the additional controls for the interactions
- private JPanel additionalControls;
-
- public ARubberbandGroup(AInteractionsManager manager) {
- super(AInteractionGroup.WINDOW_GROUP, manager);
-
- // create the additional controls panel
- additionalControls = new JPanel();
-
- rubberbands=new HashMap();
- rbComboBox=new JComboBox();
-
- for(int i=0; i<RUBBERBAND_NAMES.length; i++) {
- rbComboBox.addItem(RUBBERBAND_NAMES[i]);
- try {
- Constructor[] c=Class.forName("atlantis.interactions.A"+RUBBERBAND_NAMES[i]+"Selection").getDeclaredConstructors();
-
- rubberbands.put(RUBBERBAND_NAMES[i], c[0].newInstance(new Object[] {}));
- } catch(Exception e) {
- AExceptionHandler.processException("Cannot make selection "+"A"+RUBBERBAND_NAMES[i]
- +"Selection",
- e);
- }
- }
-
- rbComboBox.addActionListener(new RuberbandListener());
- additionalControls.add(rbComboBox);
-
- changeRubberband();
- }
-
- /**
- * rubberband has additional controls, so return true
- */
- public boolean hasAdditionalControls() {
- return true;
- }
-
- /**
- * returns the additional controls
- */
- public JPanel getAdditionalControls() {
- return additionalControls;
- }
-
- private void changeRubberband() {
- String item=(String)rbComboBox.getSelectedItem();
-
- removeAllInteractions();
- addInteraction((AInteraction)rubberbands.get(item));
- iManager.setContext(this);
- }
-
- // generating the menu
- public JMenuItem getPopupItem() {
- JMenu menu=new JMenu(name);
- ActionListener l=new PopupListener();
-
- for(int i=0; i<RUBBERBAND_NAMES.length; i++)
- menu.add(RUBBERBAND_NAMES[i]).addActionListener(l);
-
- return menu;
- }
-
- public void setGroupState(AInteractionGroup givenGroup) {
- if(givenGroup instanceof ARubberbandGroup) {
- ARubberbandGroup panel=(ARubberbandGroup)givenGroup;
-
- this.rbComboBox.setSelectedIndex(panel.rbComboBox.getSelectedIndex());
- }
- }
-
- class RuberbandListener implements ActionListener {
- public void actionPerformed(ActionEvent e) {
- changeRubberband();
- }
- }
-
-
- class PopupListener implements ActionListener {
- public void actionPerformed(ActionEvent e) {
- ACanvas.getCanvas().getCurrentWindow().getInteractionToolBar().setSelectedGroup(name);
- rbComboBox.setSelectedItem(e.getActionCommand());
- }
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/interactions/ARubberbandYXGroup.java b/graphics/AtlantisJava/src/atlantis/interactions/ARubberbandYXGroup.java
deleted file mode 100755
index 705da5e8e13..00000000000
--- a/graphics/AtlantisJava/src/atlantis/interactions/ARubberbandYXGroup.java
+++ /dev/null
@@ -1,109 +0,0 @@
-package atlantis.interactions;
-
-import atlantis.canvas.ACanvas;
-import atlantis.output.AExceptionHandler;
-
-import java.awt.event.ActionEvent;
-import java.awt.event.ActionListener;
-import javax.swing.JMenuItem;
-import javax.swing.JMenu;
-import javax.swing.JComboBox;
-import javax.swing.JPanel;
-
-import java.lang.reflect.Constructor;
-import java.util.HashMap;
-
-public class ARubberbandYXGroup extends AInteractionGroup {
-
- private final static String[] RUBBERBAND_NAMES= {"RectangleYX", "RotatedRectangle", "Parallelogram",
- "Square", "XSkew", "YSkew", "XSlice", "YSlice"};
-
- private HashMap rubberbands;
- private JComboBox rbComboBox;
- // the panel that will contain the additional controls for the interactions
- private JPanel additionalControls;
-
- public ARubberbandYXGroup(AInteractionsManager manager) {
- super(AInteractionGroup.WINDOW_GROUP, manager);
-
- // create the additional controls panel
- additionalControls = new JPanel();
-
- rubberbands=new HashMap();
- rbComboBox=new JComboBox();
-
- for(int i=0; i<RUBBERBAND_NAMES.length; i++) {
- rbComboBox.addItem(RUBBERBAND_NAMES[i]);
- try {
- Constructor[] c=Class.forName("atlantis.interactions.A"+RUBBERBAND_NAMES[i]+"Selection").getDeclaredConstructors();
-
- rubberbands.put(RUBBERBAND_NAMES[i], c[0].newInstance(new Object[] {}));
- } catch(Exception e) {
- AExceptionHandler.processException("Cannot make selection "+"A"+RUBBERBAND_NAMES[i]
- +"Selection",
- e);
- }
- }
-
- rbComboBox.addActionListener(new RuberbandListener());
- additionalControls.add(rbComboBox);
-
- changeRubberband();
- }
-
- /**
- * rubberband has additional controls, so return true
- */
- public boolean hasAdditionalControls() {
- return true;
- }
-
- /**
- * returns the additional controls
- */
- public JPanel getAdditionalControls() {
- return additionalControls;
- }
-
- private void changeRubberband() {
- String item=(String)rbComboBox.getSelectedItem();
-
- removeAllInteractions();
- addInteraction((AInteraction)rubberbands.get(item));
- iManager.setContext(this);
- }
-
- // generating the menu
- public JMenuItem getPopupItem() {
- JMenu menu=new JMenu(name);
- ActionListener l=new PopupListener();
-
- for(int i=0; i<RUBBERBAND_NAMES.length; i++)
- menu.add(RUBBERBAND_NAMES[i]).addActionListener(l);
-
- return menu;
- }
-
- public void setGroupState(AInteractionGroup givenGroup) {
- if(givenGroup instanceof ARubberbandYXGroup) {
- ARubberbandYXGroup panel=(ARubberbandYXGroup)givenGroup;
-
- this.rbComboBox.setSelectedIndex(panel.rbComboBox.getSelectedIndex());
- }
- }
-
- class RuberbandListener implements ActionListener {
- public void actionPerformed(ActionEvent e) {
- changeRubberband();
- }
- }
-
-
- class PopupListener implements ActionListener {
- public void actionPerformed(ActionEvent e) {
- ACanvas.getCanvas().getCurrentWindow().getInteractionToolBar().setSelectedGroup(name);
- rbComboBox.setSelectedItem(e.getActionCommand());
- }
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/interactions/AScaleCopyGroup.java b/graphics/AtlantisJava/src/atlantis/interactions/AScaleCopyGroup.java
deleted file mode 100755
index 05a6d681437..00000000000
--- a/graphics/AtlantisJava/src/atlantis/interactions/AScaleCopyGroup.java
+++ /dev/null
@@ -1,14 +0,0 @@
-package atlantis.interactions;
-
-
-public class AScaleCopyGroup extends AInteractionGroup {
-
- AScaleCopyInteraction scaleCopyInteraction;
-
- public AScaleCopyGroup(AInteractionsManager iManager) {
- super(AInteractionGroup.CANVAS_GROUP, iManager);
- scaleCopyInteraction=new AScaleCopyInteraction();
- this.addInteraction(scaleCopyInteraction);
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/interactions/AScaleCopyInteraction.java b/graphics/AtlantisJava/src/atlantis/interactions/AScaleCopyInteraction.java
deleted file mode 100755
index 6e4492014d7..00000000000
--- a/graphics/AtlantisJava/src/atlantis/interactions/AScaleCopyInteraction.java
+++ /dev/null
@@ -1,24 +0,0 @@
-package atlantis.interactions;
-
-import java.awt.*;
-import java.awt.geom.*;
-
-public class AScaleCopyInteraction extends AInteraction {
-
- public AScaleCopyInteraction() {
- super(1, AUTOMATIC_REPAINT, SCREEN_COORDINATES, false);
- hr[0]=new Rectangle2D.Double(0, 0, 0, 0);
- }
-
- public void paint(Graphics2D g) {}
-
- public void connect(AInteractionsManager manager) {
- super.connect(manager);
- window.setScaleCopyStatus(true);
- }
-
- public void disconnect() {
- window.setScaleCopyStatus(false);
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/interactions/ASelection.java b/graphics/AtlantisJava/src/atlantis/interactions/ASelection.java
deleted file mode 100755
index 1a7b181aea5..00000000000
--- a/graphics/AtlantisJava/src/atlantis/interactions/ASelection.java
+++ /dev/null
@@ -1,455 +0,0 @@
-package atlantis.interactions;
-
-import java.util.ArrayList;
-import java.util.HashMap;
-import java.util.HashSet;
-import java.util.Iterator;
-
-import java.awt.GridLayout;
-import java.awt.Point;
-import java.awt.Graphics2D;
-import java.awt.Rectangle;
-import java.awt.Dimension;
-import java.awt.Polygon;
-import java.awt.event.ActionListener;
-import java.awt.event.ActionEvent;
-import java.awt.geom.Point2D;
-import java.awt.geom.Ellipse2D;
-
-import javax.swing.JOptionPane;
-import javax.swing.JPanel;
-import javax.swing.JMenuItem;
-import javax.swing.JButton;
-
-import atlantis.canvas.ACanvas;
-import atlantis.canvas.AWindow;
-import atlantis.graphics.ADrawnGraphics2D;
-import atlantis.graphics.AGraphics;
-import atlantis.graphics.ACoord;
-import atlantis.graphics.dnd.ADnDButton;
-import atlantis.graphics.dnd.ADnDLabel;
-import atlantis.graphics.dnd.ADragListener;
-import atlantis.gui.AGUI;
-import atlantis.gui.ALogPane;
-import atlantis.list.AListManager;
-import atlantis.list.AList;
-import atlantis.output.AExceptionHandler;
-import atlantis.output.AOutput;
-import atlantis.utils.ALogger;
-import atlantis.utils.AMath;
-
-
-
-/**
- * The superclass of all the selection (rubberband) interactions.
- */
-public abstract class ASelection extends AInteraction
- implements ASleepMouseDragListener, ActionListener
-{
-
- private static ALogger logger = ALogger.getLogger(ASelection.class);
-
- private JPanel actionsPanel;
- private GridLayout actionsPanelLayout;
- private int d = 10;
- private boolean[][] map;
- protected final static int radius = 10;
- protected int region;
- protected boolean isValid = false;
-
-
- public final static String ZOOM = "Zoom";
- public final static String NEW_LIST = "New List";
- public final static String SUMMARIZE = "Summarize";
-
-
-
- public ASelection(int hotRegionsCount)
- {
- super(hotRegionsCount, AUTOMATIC_REPAINT, SCREEN_COORDINATES, true);
-
- for(int i = 0; i < hr.length; i++)
- {
- hr[i] = new Ellipse2D.Double(0, 0, radius, radius);
- }
-
- actionsPanelLayout = new GridLayout(0, 1);
- actionsPanel = new JPanel(actionsPanelLayout);
-
-
- addActionButton(ZOOM, new ADragListener()
- {
- public void dragPerformed(Object from, Object to, int action)
- {
- if(to instanceof ADnDLabel)
- {
- zoomIn(((ADnDLabel) to).getText());
- }
- else if(to instanceof AWindow)
- {
- zoomIn(((AWindow) to).getName());
- }
- invalidate();
- }
- },
- new ActionListener()
- {
- public void actionPerformed(ActionEvent e)
- {
- window.saveCorners();
- window.setUserCorners(getCorners());
- invalidate();
- }
- });
-
-
- addActionButton(NEW_LIST, new ActionListener()
- {
- public void actionPerformed(ActionEvent e)
- {
- if(e.getActionCommand().equals(NEW_LIST))
- {
- Point2D.Double[] zoomedCorners = getCorners();
- Point2D.Double[] userCorners = window.getUserCorners();
- window.setUserCornersNoRepaint(zoomedCorners);
- Rectangle bounds = window.getBounds();
- bounds.setLocation(0, 0);
- window.paintWindowFromScratch(new ADrawnGraphics2D(bounds));
- ADrawnGraphics2D.updateLastDrawn();
- AListManager.getInstance().copyLastDrawn();
- AListManager.getInstance().showLists();
- window.setUserCornersNoRepaint(userCorners);
- }
- }
- });
-
-
- addActionButton(SUMMARIZE, new ActionListener()
- {
- public void actionPerformed(ActionEvent e)
- {
- if(e.getActionCommand().equals(SUMMARIZE))
- {
- Point2D.Double[] zoomedCorners = getCorners();
- Point2D.Double[] userCorners = window.getUserCorners();
- window.setUserCornersNoRepaint(zoomedCorners);
- Rectangle bounds = window.getBounds();
- bounds.setLocation(0, 0);
- window.paintWindowFromScratch(new ADrawnGraphics2D(bounds));
- ADrawnGraphics2D.updateLastDrawn();
- AListManager.getInstance().summarize();
- window.setUserCornersNoRepaint(userCorners);
- }
- }
- });
-
- } // ASelection() ---------------------------------------------------------
-
-
-
-
- public void invalidate()
- {
- isValid = false;
- actionsPanel.setVisible(false);
- }
-
-
- public void addActionButton(String buttonName, ADragListener dragList,
- ActionListener clickList)
- {
- ADnDButton b = new ADnDButton(buttonName);
- b.setFocusPainted(false);
- b.addActionListener(clickList);
- b.addDragListener(dragList);
- actionsPanelLayout.setRows(actionsPanelLayout.getRows() + 1);
- actionsPanel.add(b);
- actionsPanel.setSize(actionsPanel.getPreferredSize());
- }
-
-
- public void addActionButton(String buttonName, ActionListener clickListener)
- {
- JButton b = new JButton(buttonName);
- b.setFocusPainted(false);
- b.addActionListener(clickListener);
- actionsPanelLayout.setRows(actionsPanelLayout.getRows() + 1);
- actionsPanel.add(b);
- actionsPanel.setSize(actionsPanel.getPreferredSize());
- }
-
-
- public JMenuItem[] getPopupItems()
- {
- ArrayList<JMenuItem> al = new ArrayList<JMenuItem>();
- if(window.getUnzoomPossible())
- {
- JMenuItem it = new JMenuItem("Unzoom");
- it.addActionListener(new ActionListener()
- {
- public void actionPerformed(ActionEvent e)
- {
- window.unzoom();
- }
- });
- al.add(it);
- }
- if(window.getUnzoomFullPossible())
- {
- JMenuItem it = new JMenuItem("Unzoom Full");
- it.addActionListener(new ActionListener()
- {
- public void actionPerformed(ActionEvent e)
- {
- window.unzoomFull();
- }
- });
- al.add(it);
- }
- // Can't cast arrays very easily...
- JMenuItem[] ret = new JMenuItem[al.size()];
- for(int i = 0; i < al.size(); i++)
- {
- ret[i] = al.get(i);
- }
- return ret;
-
- }
-
-
- public void actionPerformed(ActionEvent e)
- {
- String action = e.getActionCommand();
- if(action.equals("Unzoom"))
- {
- window.unzoom();
- }
- }
-
-
- public int getPopupType()
- {
- return APopupListener.WINDOW_POPUP;
- }
-
-
- public void connect(AInteractionsManager manager)
- {
- super.connect(manager);
- window.getView().add(actionsPanel);
- if(isValid)
- {
- actionsPanel.setVisible(true);
- }
- else
- {
- actionsPanel.setVisible(false);
- }
- window.validate();
- }
-
-
- public void disconnect()
- {
- window.getView().remove(actionsPanel);
- }
-
-
- public int getButton()
- {
- return AInteractionsManager.LEFT;
- }
-
-
- public void start(Point2D.Double p, int region, int key)
- {
- this.region = region;
- actionsPanel.setVisible(false);
- }
-
-
- public void cancel() {}
-
-
- private boolean canLayout(int i0, int j0)
- {
- Dimension panelSize = actionsPanel.getSize();
- panelSize.width = (int) Math.ceil((panelSize.width + d) / (double) d);
- panelSize.height = (int) Math.ceil((panelSize.height + d) / (double) d);
- for(int j = 0; j < panelSize.height; j++)
- {
- for(int i = 0; i < panelSize.width; i++)
- {
- if(i0 + i > map[0].length - 1)return false;
- if(j0 + j > map.length - 1)return false;
- if(map[j0 + j][i0 + i] == false)return false;
- }
- }
- return true;
-
- }
-
-
- private Point calculateBestPosition()
- {
- AWindow w = window;
- Dimension size = w.getView().getSize();
- int ny = (int) Math.ceil(size.height / (double) d);
- int nx = (int) Math.ceil(size.width / (double) d);
- map = new boolean[ny][nx];
- Polygon p = new Polygon();
- for(int i = 0; i < 4; i++)
- {
- p.addPoint((int) hr[i].getCenterX(), (int) hr[i].getCenterY());
- }
-
- for(int j = 0; j < map.length; j++)
- {
- for(int i = 0; i < map[0].length; i++)
- {
- if(p.intersects(i * d, j * d, d, d) || p.contains(i * d, j * d, d, d))
- {
- map[j][i] = false;
- }
- else
- {
- map[j][i] = true;
- }
- }
- }
-
- for(int j = 0; j < map.length; j++)
- {
- for(int i = 0; i < map[0].length; i++)
- {
- if(canLayout(i, j))
- {
- map[j][i] = true;
- }
- else
- {
- map[j][i] = false;
- }
- }
- }
-
- int x0 = (int) hr[region].getMaxX();
- int y0 = (int) hr[region].getMaxY();
- int i_min = 0, j_min = 0;
- double dist, dist_min = 1e10;
- for(int j = 0; j < map.length; j++)
- {
- for(int i = 0; i < map[0].length; i++)
- {
- if(map[j][i] == true)
- {
- dist = Math.hypot(x0 - i*d, y0 - j*d);
- if(dist < dist_min)
- {
- i_min = i;
- j_min = j;
- dist_min = dist;
- }
- }
- }
- }
-
- return new Point(i_min * d + d / 2, j_min * d + d / 2);
- }
-
-
- public void stop()
- {
- if(isValid)
- {
- Point p = calculateBestPosition();
- actionsPanel.setLocation(p.x, p.y);
- actionsPanel.setVisible(true);
- window.revalidate();
- }
- }
-
-
- protected int getUpperLeftRegion()
- {
- int point = 0;
- double savedValue = getRadius(hr[0]);
- for(int i = 1; i < 4; i++)
- {
- double value = getRadius(hr[i]);
- if(value < savedValue)
- {
- savedValue = value;
- point = i;
- }
- }
- return point;
- }
-
-
- protected Point2D.Double[] convert(
- double x0, double y0, double x1, double y1, double x2, double y2)
- {
- if(!isValid)
- {
- return window.getUserCorners();
- }
- if(Math.abs(getAPolygon().getArea()) == 0)
- {
- return window.getUserCorners();
- }
-
- double[][][] hv = new double[2][1][3];
- hv[0][0][0] = x0;
- hv[1][0][0] = y0;
- hv[0][0][1] = x1;
- hv[1][0][1] = y1;
- hv[0][0][2] = x2;
- hv[1][0][2] = y2;
- ACoord d = window.calculateUser(new ACoord(hv));
- Point2D.Double[] corners = new Point2D.Double[3];
- for(int i = 0; i < 3; i++)
- {
- corners[i] = new Point2D.Double(d.hv[0][0][i], d.hv[1][0][i]);
- }
-
- return corners;
- }
-
-
- protected Point2D.Double[] convert(int region1, int region2, int region3)
- {
- return convert(hr[region1].getCenterX(), hr[region1].getCenterY(),
- hr[region2].getCenterX(),
- hr[region2].getCenterY(), hr[region3].getCenterX(),
- hr[region3].getCenterY());
- }
-
-
- public abstract Point2D.Double[] getCorners();
-
-
- protected void paintStandard(Graphics2D g)
- {
- if(isValid)
- {
- AGraphics ag = AGraphics.makeAGraphics(g);
- ag.updateDrawParameters(frameDrawParameters);
- ag.drawPolygon(getAPolygon());
- drawLine(4, 5, ag);
- ag.updateDrawParameters(drawParameters);
- ag.drawPolygon(getAPolygon());
- drawLine(4, 5, ag);
- drawActivePoint(region, ag);
- }
- }
-
-
- public void zoomIn(String zoomWindow)
- {
- String currentWindow = window.getName();
- ACanvas.getCanvas().copyWindowSettings(currentWindow, zoomWindow);
- ACanvas.getCanvas().getWindow(zoomWindow).setUserCorners(getCorners());
- }
-
-} // class ASelection =======================================================
diff --git a/graphics/AtlantisJava/src/atlantis/interactions/ASkewGroup.java b/graphics/AtlantisJava/src/atlantis/interactions/ASkewGroup.java
deleted file mode 100755
index 70057212cca..00000000000
--- a/graphics/AtlantisJava/src/atlantis/interactions/ASkewGroup.java
+++ /dev/null
@@ -1,14 +0,0 @@
-package atlantis.interactions;
-
-
-public class ASkewGroup extends AInteractionGroup {
-
- ASkewInteraction skewInteraction;
-
- public ASkewGroup(AInteractionsManager iManager) {
- super(AInteractionGroup.WINDOW_GROUP, iManager);
- skewInteraction=new ASkewInteraction();
- this.addInteraction(skewInteraction);
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/interactions/ASkewInteraction.java b/graphics/AtlantisJava/src/atlantis/interactions/ASkewInteraction.java
deleted file mode 100755
index a338f168638..00000000000
--- a/graphics/AtlantisJava/src/atlantis/interactions/ASkewInteraction.java
+++ /dev/null
@@ -1,123 +0,0 @@
-package atlantis.interactions;
-
-import atlantis.canvas.AWindow;
-import atlantis.parameters.APar;
-import atlantis.projection.AProjectionFR;
-import atlantis.projection.AProjectionFZ;
-import atlantis.projection.AProjection;
-import atlantis.projection.AProjectionRZ;
-import java.awt.*;
-import java.awt.geom.*;
-import java.awt.event.*;
-import javax.swing.*;
-
-/**
- * The interaction that performs a skew on the picture.
- */
-public class ASkewInteraction extends AInteraction
- implements ASleepMouseDragListener, ActionListener {
-
- private int d=20;
- private Point2D.Double p0;
- private JMenuItem[] popupItems;
- private final static String NO_SKEW="Set No Skew";
-
- public ASkewInteraction() {
- super(1, WINDOW_TOTAL_REPAINT, WORLD_COORDINATES, false);
-
- popupItems = new JMenuItem[] {
- new JMenuItem(NO_SKEW)
- };
-
- popupItems[0].addActionListener(this);
-
- // The center of the ellipse is in (0, 0) in User Space
- hr[0]=new Ellipse2D.Double(-d/2, -d/2, d, d);
- }
-
- public int init(Point2D.Double p, int key) {
- p0=p;
- return 0;
- }
-
- public int getButton() {
- return AInteractionsManager.LEFT;
- }
-
- public void start(Point2D.Double p, int region, int key) {}
-
- public void drag(Point2D.Double p, int region, int key) {
- AProjection proj=window.getProjection();
-
- if(proj instanceof AProjectionFR) {
- performFRSkew(-(p.y-p0.y)/p0.x, window);
- } else if(proj instanceof AProjectionFZ) {
- performFZSkew(-(p.y-p0.y)/p0.x, window);
- } else if(proj instanceof AProjectionRZ) {
- if(key==KeyEvent.VK_V)
- performFZSkew(-(p.y-p0.y)/p0.x, window);
- else
- performRZSkew(-(p.x-p0.x)/p0.y, window);
- }
- }
-
- public static void performFRSkew(double f, AWindow window) {
- Point2D.Double[] corners=window.getUserCorners();
-
- for(int i=0; i<corners.length; i++)
- corners[i].y+=f*corners[i].x;
-
- window.setUserCorners(corners);
- }
-
- public static void performFZSkew(double f, AWindow window) {
- Point2D.Double[] corners=window.getUserCorners();
-
- double zVtx=parameterStore.get("Event", "ZVtx").getD();
-
- for(int i=0; i<corners.length; i++)
- corners[i].y+=f*(corners[i].x-zVtx);
-
- window.setUserCorners(corners);
- }
-
- public static void performRZSkew(double f, AWindow window) {
- Point2D.Double[] corners=window.getUserCorners();
-
- for(int i=0; i<corners.length; i++)
- corners[i].x+=f*corners[i].y;
-
- window.setUserCorners(corners);
- }
-
- public void stop() {}
-
- public void cancel() {}
-
- public void paint(Graphics2D g) {}
-
- public int getPopupType() {
- return APopupListener.WINDOW_POPUP;
- }
-
- public JMenuItem[] getPopupItems() {
- return popupItems;
- }
-
- public void actionPerformed(ActionEvent e) {
-
- }
- public AModifier[] getModifiers(){
- if(window.getProjection() instanceof AProjectionRZ) {
- return new AModifier[] {
- new AModifier(KeyEvent.VK_V, false, "Y Skew"),
- new AModifier(KeyEvent.VK_H, false, "X Skew"),
- new AModifier(KeyEvent.VK_UNDEFINED, false, "X Skew")
- };
- } else {
- return new AModifier[0];
- }
- }
-
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/interactions/ASleepMouseDragListener.java b/graphics/AtlantisJava/src/atlantis/interactions/ASleepMouseDragListener.java
deleted file mode 100755
index 60b145d8b13..00000000000
--- a/graphics/AtlantisJava/src/atlantis/interactions/ASleepMouseDragListener.java
+++ /dev/null
@@ -1,13 +0,0 @@
-package atlantis.interactions;
-
-
-import java.awt.geom.*;
-
-
-/**
- * This listener extends AMouseDragListener in order to make it possible to
- * get drag events even without any hot region.
- */
-public interface ASleepMouseDragListener extends AMouseDragListener {
- int init(Point2D.Double p, int key);
-}
diff --git a/graphics/AtlantisJava/src/atlantis/interactions/ASquareSelection.java b/graphics/AtlantisJava/src/atlantis/interactions/ASquareSelection.java
deleted file mode 100755
index 0f12dae04d5..00000000000
--- a/graphics/AtlantisJava/src/atlantis/interactions/ASquareSelection.java
+++ /dev/null
@@ -1,87 +0,0 @@
-package atlantis.interactions;
-
-import java.awt.Graphics2D;
-import java.awt.geom.Point2D;
-
-import atlantis.graphics.AGraphics;
-import atlantis.utils.AMath;
-
-public class ASquareSelection extends ASelection
-{
- public ASquareSelection()
- {
- super(5);
- }
-
- public int init(Point2D.Double p, int key)
- {
- isValid = false;
-
- for (int i = 0; i < 5; i++)
- setCenter(hr[i], p.x, p.y);
-
- this.region = 2;
- return region;
- }
-
- public void drag(Point2D.Double p, int region, int key)
- {
- isValid = true;
-
- if (region == 4)
- {
- double dx = p.x - hr[4].getCenterX();
- double dy = p.y - hr[4].getCenterY();
-
- for (int i = 0; i < 5; i++)
- setCenter(hr[i], hr[i].getCenterX() + dx, hr[i].getCenterY() + dy);
- }
- else
- {
- double ratio = ((double) window.getSize().width) / ((double) window.getSize().height);
-
- double sx1 = AMath.getSign(p.x - hr[4].getCenterX());
- double sy1 = AMath.getSign(p.y - hr[4].getCenterY());
- double sx2 = sy1;
- double sy2 = sx1;
- double dy = getRadius(p.x, p.y, 4) / Math.sqrt(1 + ratio * ratio);
- double dx = dy * ratio;
-
- setCenter(hr[region], hr[4].getCenterX() + dx * sx1, hr[4].getCenterY() + dy * sy1);
- setCenter(hr[(region + 2) % 4], hr[4].getCenterX() - dx * sx1, hr[4].getCenterY() - dy * sy1);
-
- setCenter(hr[(region + 1) % 4], hr[4].getCenterX() - dx * sx2, hr[4].getCenterY() + dy * sy2);
- setCenter(hr[(region + 3) % 4], hr[4].getCenterX() + dx * sx2, hr[4].getCenterY() - dy * sy2);
- }
- }
-
- public void paint(Graphics2D g)
- {
- if (isValid)
- {
- AGraphics ag = AGraphics.makeAGraphics(g);
-
- ag.updateDrawParameters(frameDrawParameters);
- ag.drawPolygon(getAPolygon());
- drawLine(0, 2, ag);
- drawLine(1, 3, ag);
- ag.updateDrawParameters(drawParameters);
- ag.drawPolygon(getAPolygon());
- drawLine(0, 2, ag);
- drawLine(1, 3, ag);
- drawActivePoint(region, ag);
- }
- }
-
- public Point2D.Double[] getCorners()
- {
- int first = getUpperLeftRegion();
-
- // Calculate the adjacent partner and the opposite corner.
- int second = (first + 1) % 4;
- int third = (first + 2) % 4;
-
- return convert(first, second, third);
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/interactions/ASynchroCursorsGroup.java b/graphics/AtlantisJava/src/atlantis/interactions/ASynchroCursorsGroup.java
deleted file mode 100755
index 4a74be687a7..00000000000
--- a/graphics/AtlantisJava/src/atlantis/interactions/ASynchroCursorsGroup.java
+++ /dev/null
@@ -1,15 +0,0 @@
-package atlantis.interactions;
-
-
-public class ASynchroCursorsGroup extends AInteractionGroup {
-
- private ASynchroCursorsInteraction mmSelection;
-
- public ASynchroCursorsGroup(AInteractionsManager iManager) {
- super(AInteractionGroup.CANVAS_GROUP, iManager);
-
- mmSelection=new ASynchroCursorsInteraction();
- addInteraction(mmSelection);
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/interactions/ASynchroCursorsInteraction.java b/graphics/AtlantisJava/src/atlantis/interactions/ASynchroCursorsInteraction.java
deleted file mode 100755
index 9f7915a17dc..00000000000
--- a/graphics/AtlantisJava/src/atlantis/interactions/ASynchroCursorsInteraction.java
+++ /dev/null
@@ -1,483 +0,0 @@
-package atlantis.interactions;
-
-import java.awt.Graphics2D;
-import java.awt.event.KeyEvent;
-import java.awt.geom.Ellipse2D;
-import java.awt.geom.Point2D;
-
-import atlantis.canvas.ACanvas;
-import atlantis.graphics.ACoord;
-import atlantis.graphics.ACursorFactory;
-import atlantis.graphics.AGraphics;
-import atlantis.parameters.APar;
-import atlantis.parameters.AParameterUtilities;
-import atlantis.projection.AProjection2D;
-import atlantis.projection.AProjectionFR;
-import atlantis.projection.AProjectionFZ;
-import atlantis.projection.AProjectionLegoPlot;
-import atlantis.projection.AProjectionRZ;
-import atlantis.projection.AProjectionVP;
-import atlantis.projection.AProjectionXZ;
-import atlantis.projection.AProjectionYX;
-import atlantis.projection.AProjectionYZ;
-import atlantis.utils.AMath;
-
-public class ASynchroCursorsInteraction extends AInteraction
- implements ASleepMouseDragListener, AEnterExitListener
-{
- /**
- * The position of the moving marker in 3D. Phi is in degrees.
- * (Must be static)
- */
- private static double rho, phi, z, sign_rho;
-
- private static final double NOT_DEFINED = 9999.0;
- private static final double RHO_MAX = 3000.0;
- private static final double PHI_MAX = 400.0;
- private static final double Z_MAX = 3000.0;
- private static final double ETA_MAX = 10.0;
-
- private static int key = 0;
- protected int radius = 10;
-
- public ASynchroCursorsInteraction()
- {
- super(1, ALL_WINDOWS_REPAINT, WORLD_COORDINATES, true);
- hr[0] = new Ellipse2D.Double(0, 0, radius, radius);
- }
-
- public int getButton()
- {
- return AInteractionsManager.LEFT;
- }
-
- /**
- * Initialize the control points based on the starting point
- */
- public int init(Point2D.Double p, int key)
- {
- this.key = key;
- setCenter(hr[0], p.x, p.y);
- // ACanvas.getCanvas().repaintOthers(window);
- return 0;
- }
-
- public void start(Point2D.Double p, int region, int key)
- {
- //call drag to update the cursor even if only a button is pressed
- drag(p,region,key);
- }
-
- /**
- * Move the active control point to the point (x, y).
- *
- * @param pInput the input point
- * @param region the region
- * @param key the current key being pressed
- */
- public void drag(Point2D.Double pInput, int region, int key)
- {
- this.key = key;
- AProjection2D projection = (AProjection2D) window.getProjection();
-
- Point2D.Double p = projection.inverseNonLinearTransform(pInput);
-
- setCenter(hr[0], p.x, p.y);
-
- rho = NOT_DEFINED;
- z = NOT_DEFINED;
- phi = NOT_DEFINED;
- sign_rho = 1.;
-
- if (projection instanceof AProjectionYX)
- {
- phi = Math.toDegrees(Math.atan2(p.y, p.x));
- if (phi < 0.)
- phi += 360.;
- rho = AParameterUtilities.getRhoSign(p.x, p.y) * Math.sqrt(p.x * p.x + p.y * p.y);
- }
- else if (projection instanceof AProjectionFR)
- {
- phi = p.y;
- rho = p.x;
- }
- else if (projection instanceof AProjectionFZ)
- {
- phi = p.y;
- z = p.x;
- }
- else if (projection instanceof AProjectionRZ)
- {
- rho = Math.abs(p.y);
- if (p.y < 0.)
- sign_rho = -1.;
- z = p.x;
- }
- else if (projection instanceof AProjectionYZ)
- {
- z = p.x;
- }
- else if (projection instanceof AProjectionXZ)
- {
- z = p.x;
- }
- else if (projection instanceof AProjectionVP)
- {
- phi = p.y;
- rho = parameterStore.get("VP", "RMax").getD();
- double eta = p.x;
-
- z = parameterStore.get("Event", "ZVtx").getD() + 0.5 * rho * (Math.exp(eta) - 1. / Math.exp(eta));
- }
- else if (projection instanceof AProjectionLegoPlot)
- {
- // added by Mark Stockton
- // update parameters
- AProjectionLegoPlot.update();
- //reverse the adjustPhi function
- p.x=-(AProjectionLegoPlot.adjustPhi(window,-p.x,p.y));
- if(p.x>-1.0 && p.x<361.0 && p.y>-5.01 && p.y<5.01)
- {
- phi=p.x;
- rho = parameterStore.get("VP", "RMax").getD();
- double eta=p.y;
- if (AProjectionLegoPlot.reverse)
- eta = -eta;
- z = parameterStore.get("Event", "ZVtx").getD() + 0.5 * rho * (Math.exp(eta) - 1. / Math.exp(eta));
- }
- }
- if (key == KeyEvent.VK_P && phi != NOT_DEFINED)
- {
- double phiRZ = phi + 90.;
-
- if (phiRZ < 0.)
- phiRZ += 360;
- if (phiRZ > 360.)
- phiRZ -= 360;
- parameterStore.get("RZ", "Phi").setD(phiRZ);
- parameterStore.get("RZ", "Phi").globalize(ACanvas.getCanvas().getCurrentWindow().getIndex());
- ACanvas.getCanvas().repaintAllFromScratch();
- }
- else
- ACanvas.getCanvas().repaintOthers(window);
- }
-
- public void cancel()
- {}
-
- public void stop()
- {}
-
- public void paint(Graphics2D g)
- {
- // must use the window version of the parameters
- parameterStore.selectWindowParameters(window.getName());
- AProjection2D projection = (AProjection2D) window.getProjection();
- AGraphics ag = AGraphics.makeAGraphics(g);
-
- for (int i = 0; i < 2; i++)
- {
- if (i == 0)
- ag.updateDrawParameters(frameDrawParameters);
- else
- ag.updateDrawParameters(drawParameters);
-
- if (projection instanceof AProjectionYX)
- {
- if (phi != NOT_DEFINED)
- {
- double r = (rho == NOT_DEFINED) ? RHO_MAX : Math.abs(rho);
- double cosPhi = Math.cos(Math.toRadians(phi));
- double sinPhi = Math.sin(Math.toRadians(phi));
-
- Point2D.Double p = window.calculateDisplay(projection.nonLinearTransform(0, 0));
- Point2D.Double p1 = window.calculateDisplay(projection.nonLinearTransform(r * cosPhi, r * sinPhi));
- Point2D.Double p2 = window.calculateDisplay(projection.nonLinearTransform(RHO_MAX * cosPhi, RHO_MAX * sinPhi));
- Point2D.Double p3 = window.calculateDisplay(projection.nonLinearTransform(-RHO_MAX * cosPhi, -RHO_MAX * sinPhi));
-
- if (key == KeyEvent.VK_P)
- {
- ag.drawLine(p2.x, p2.y, p3.x, p3.y);
- }
- else
- {
- ag.drawLine(p.x, p.y, p2.x, p2.y);
- if (rho != NOT_DEFINED)
- ag.drawSymbol(p1.x, p1.y);
- }
-
- }
- else if (rho != NOT_DEFINED)
- {
- int numPoints = 48;
- double[][][] hv = new double[2][1][numPoints];
-
- for (int j = 0; j < numPoints; j++)
- {
- hv[0][0][j] = rho * Math.cos(Math.PI * 2 * j / 48);
- hv[1][0][j] = rho * Math.sin(Math.PI * 2 * j / 48);
- }
- ACoord d = window.calculateDisplay(projection.nonLinearTransform(new ACoord(hv)));
-
- ag.drawPolygon(d.hv[0][0], d.hv[1][0], numPoints);
- }
- }
- else if (projection instanceof AProjectionFR)
- {
- int numPoints = 5;
- double[][][] hv = new double[2][1][numPoints];
-
- hv[0][0][0] = Math.abs(rho);
- hv[1][0][0] = phi;
- hv[0][0][1] = Math.abs(rho);
- hv[1][0][1] = 0.;
- hv[0][0][2] = Math.abs(rho);
- hv[1][0][2] = RHO_MAX;
- hv[0][0][3] = 0.;
- hv[1][0][3] = phi;
- hv[0][0][4] = RHO_MAX;
- hv[1][0][4] = phi;
- ACoord d = window.calculateDisplay(projection.nonLinearTransform(new ACoord(hv)));
-
- if (rho != NOT_DEFINED)
- ag.drawLine(d.hv[0][0][1], d.hv[1][0][1], d.hv[0][0][2], d.hv[1][0][2]);
- if (phi != NOT_DEFINED)
- ag.drawLine(d.hv[0][0][3], d.hv[1][0][3], d.hv[0][0][4], d.hv[1][0][4]);
- if (rho != NOT_DEFINED && phi != NOT_DEFINED)
- ag.drawSymbol(d.hv[0][0][0], d.hv[1][0][0]);
- }
- else if (projection instanceof AProjectionFZ)
- {
- int numPoints = 5;
- double[][][] hv = new double[2][1][numPoints];
-
- hv[0][0][0] = z;
- hv[1][0][0] = phi;
- hv[0][0][1] = z;
- hv[1][0][1] = 0.;
- hv[0][0][2] = z;
- hv[1][0][2] = PHI_MAX;
- hv[0][0][3] = -Z_MAX;
- hv[1][0][3] = phi;
- hv[0][0][4] = Z_MAX;
- hv[1][0][4] = phi;
- ACoord d = window.calculateDisplay(projection.nonLinearTransform(new ACoord(hv)));
-
- if (z != NOT_DEFINED)
- ag.drawLine(d.hv[0][0][1], d.hv[1][0][1], d.hv[0][0][2], d.hv[1][0][2]);
- if (phi != NOT_DEFINED)
- ag.drawLine(d.hv[0][0][3], d.hv[1][0][3], d.hv[0][0][4], d.hv[1][0][4]);
- if (z != NOT_DEFINED && phi != NOT_DEFINED)
- ag.drawSymbol(d.hv[0][0][0], d.hv[1][0][0]);
- }
- else if (projection instanceof AProjectionRZ)
- {
- if (rho != NOT_DEFINED && phi != NOT_DEFINED && z != NOT_DEFINED && (rho != 0. || z != 0.))
- {
- int numPoints = 15;
- double[][][] hv = new double[2][1][numPoints];
-
- double dr, dz;
- if (Math.abs(rho/RHO_MAX) > Math.abs(z/Z_MAX)) {
- dr = RHO_MAX / (numPoints-1);
- dz = z * (RHO_MAX / ((numPoints-1)*rho));
- } else {
- dz = AMath.getSign(z) * Z_MAX / (numPoints-1);
- dr = rho * Math.abs(Z_MAX / ((numPoints-1)*z));
- }
-
- double phiMid = Math.toRadians(parameterStore.get("RZ", "Phi").getD());
-
- if (phiMid > AMath.TWO_PI)
- phiMid -= AMath.TWO_PI;
- double phiDiff = Math.abs(Math.toRadians(phi) - phiMid);
-
- if (phiDiff > Math.PI / 2. && phiDiff < 3 * Math.PI / 2.)
- dr *= -1;
-
- for (int j=0; j<numPoints; j++) {
- hv[0][0][j] = j*dz;
- hv[1][0][j] = j*dr;
- }
-
- ACoord d = window.calculateDisplay(projection.nonLinearTransform(new ACoord(hv)));
-
- ag.drawSmoothPolyline(d.hv[0][0], d.hv[1][0], numPoints);
- }
- else
- {
- int numPoints = 5;
- double[][][] hv = new double[2][1][numPoints];
-
- hv[0][0][0] = z;
- hv[1][0][0] = rho * sign_rho;
- hv[0][0][1] = z;
- hv[1][0][1] = -RHO_MAX;
- hv[0][0][2] = z;
- hv[1][0][2] = RHO_MAX;
- hv[0][0][3] = -Z_MAX;
- hv[1][0][3] = rho * sign_rho;
- hv[0][0][4] = Z_MAX;
- hv[1][0][4] = rho * sign_rho;
- ACoord d = window.calculateDisplay(projection.nonLinearTransform(new ACoord(hv)));
-
- if (z != NOT_DEFINED)
- ag.drawLine(d.hv[0][0][1], d.hv[1][0][1], d.hv[0][0][2], d.hv[1][0][2]);
- if (rho != NOT_DEFINED)
- ag.drawLine(d.hv[0][0][3], d.hv[1][0][3], d.hv[0][0][4], d.hv[1][0][4]);
- if (z != NOT_DEFINED && rho != NOT_DEFINED)
- ag.drawSymbol(d.hv[0][0][0], d.hv[1][0][0]);
- }
- }
- else if (projection instanceof AProjectionYZ)
- {
- if (rho != NOT_DEFINED && phi != NOT_DEFINED && z != NOT_DEFINED)
- {
- int numPoints = 2;
- double[][][] hv = new double[2][1][numPoints];
-
- hv[0][0][0] = 0.;
- hv[1][0][0] = 0.;
- double phiRot = AProjectionXZ.getPhi();
-
- hv[0][0][1] = z;
- hv[1][0][1] = rho * Math.sin(phiRot);
-
- ACoord d = window.calculateDisplay(projection.nonLinearTransform(new ACoord(hv)));
-
- ag.drawLine(d.hv[0][0][0], d.hv[1][0][0], d.hv[0][0][1], d.hv[1][0][1]);
- ag.drawSymbol(d.hv[0][0][1], d.hv[1][0][1]);
- }
- else if (z != NOT_DEFINED)
- {
- int numPoints = 2;
- double[][][] hv = new double[2][1][numPoints];
-
- hv[0][0][0] = z;
- hv[1][0][0] = -RHO_MAX;
- hv[0][0][1] = z;
- hv[1][0][1] = RHO_MAX;
- ACoord d = window.calculateDisplay(projection.nonLinearTransform(new ACoord(hv)));
-
- ag.drawLine(d.hv[0][0][0], d.hv[1][0][0], d.hv[0][0][1], d.hv[1][0][1]);
- }
- }
- else if (projection instanceof AProjectionXZ)
- {
- if (rho != NOT_DEFINED && phi != NOT_DEFINED && z != NOT_DEFINED)
- {
- int numPoints = 2;
- double[][][] hv = new double[2][1][numPoints];
-
- hv[0][0][0] = 0.;
- hv[1][0][0] = 0.;
- double phiRot = AProjectionXZ.getPhi();
-
- hv[0][0][1] = z;
- hv[1][0][1] = rho * Math.cos(phiRot);
-
- ACoord d = window.calculateDisplay(projection.nonLinearTransform(new ACoord(hv)));
-
- ag.drawLine(d.hv[0][0][0], d.hv[1][0][0], d.hv[0][0][1], d.hv[1][0][1]);
- ag.drawSymbol(d.hv[0][0][1], d.hv[1][0][1]);
- }
- else if (z != NOT_DEFINED)
- {
- int numPoints = 2;
- double[][][] hv = new double[2][1][numPoints];
-
- hv[0][0][0] = z;
- hv[1][0][0] = -RHO_MAX;
- hv[0][0][1] = z;
- hv[1][0][1] = RHO_MAX;
- ACoord d = window.calculateDisplay(projection.nonLinearTransform(new ACoord(hv)));
-
- ag.drawLine(d.hv[0][0][0], d.hv[1][0][0], d.hv[0][0][1], d.hv[1][0][1]);
- }
- }
- else if (projection instanceof AProjectionVP)
- {
- int numPoints = 5;
- double[][][] hv = new double[2][1][numPoints];
- double eta = 1.;
-
- if (z != NOT_DEFINED && rho != NOT_DEFINED)
- eta = AParameterUtilities.eta(z, rho);
- hv[0][0][0] = eta;
- hv[1][0][0] = phi;
- hv[0][0][1] = eta;
- hv[1][0][1] = 0.;
- hv[0][0][2] = eta;
- hv[1][0][2] = PHI_MAX;
- hv[0][0][3] = -ETA_MAX;
- hv[1][0][3] = phi;
- hv[0][0][4] = ETA_MAX;
- hv[1][0][4] = phi;
- ACoord d = window.calculateDisplay(projection.nonLinearTransform(new ACoord(hv)));
-
- if (z != NOT_DEFINED && rho != NOT_DEFINED)
- ag.drawLine(d.hv[0][0][1], d.hv[1][0][1], d.hv[0][0][2], d.hv[1][0][2]);
- if (phi != NOT_DEFINED)
- ag.drawLine(d.hv[0][0][3], d.hv[1][0][3], d.hv[0][0][4], d.hv[1][0][4]);
-
- if (z != NOT_DEFINED && phi != NOT_DEFINED && rho != NOT_DEFINED)
- ag.drawSymbol(d.hv[0][0][0], d.hv[1][0][0]);
- }
- else if (projection instanceof AProjectionLegoPlot)
- {
- //added by Mark Stockton
- double eta = 1.;
- double[][][] hv = new double[2][1][3];
- Point2D.Double[] userCorners = window.getUserCorners();
- Point2D.Double[] displayCorners = window.getDisplayCorners();
- //update parameters
- AProjectionLegoPlot.update();
- if (z != NOT_DEFINED && rho != NOT_DEFINED)
- eta = AParameterUtilities.eta(z, rho);
- if (AProjectionLegoPlot.reverse)
- eta = -eta;
- hv[0][0][0] = AProjectionLegoPlot.adjustPhi(window,phi,eta);
- hv[1][0][0] = eta;
- //top of plot coordinate
- hv[0][0][1] = AProjectionLegoPlot.adjustPhi(window,phi,userCorners[0].y);
- hv[1][0][1] = userCorners[0].y;
- //bottom of plot coordinate
- hv[0][0][2] = AProjectionLegoPlot.adjustPhi(window,phi,userCorners[2].y);
- hv[1][0][2] = userCorners[2].y;
- //convert to screen positions
- ACoord d = window.calculateDisplay(projection.nonLinearTransform(new ACoord(hv)));
- if (z != NOT_DEFINED && rho != NOT_DEFINED)
- ag.drawLine(0, d.hv[1][0][0], displayCorners[1].x, d.hv[1][0][0]);//eta line
- if (phi != NOT_DEFINED)
- ag.drawLine(d.hv[0][0][1], d.hv[1][0][1],d.hv[0][0][2], d.hv[1][0][2]);//phi line
- if (z != NOT_DEFINED && phi != NOT_DEFINED && rho != NOT_DEFINED)
- ag.drawSymbol(d.hv[0][0][0], d.hv[1][0][0]);//square where axis cross
- }
- }
- parameterStore.restoreWindowParameters();
- }
-
- /**
- * Gets called each time we enter a window in which this interaction is active
- */
- public void entered()
- {
- //Set mouse cursor
- window.setCursor(ACursorFactory.getInstance().getSyncCursor());
- }
-
- /**
- * Gets called each time we leave a window in which this interaction is active
- */
- public void exited()
- {
- //Set mouse cursor
- window.setCursor(ACursorFactory.getInstance().getSyncCursor());
- }
-
- public AModifier[] getModifiers()
- {
- return new AModifier[] { new AModifier(KeyEvent.VK_P, false, "Copy phi to RZ projection" ) };
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/interactions/AVPSelectionGroup.java b/graphics/AtlantisJava/src/atlantis/interactions/AVPSelectionGroup.java
deleted file mode 100755
index c439d48ee42..00000000000
--- a/graphics/AtlantisJava/src/atlantis/interactions/AVPSelectionGroup.java
+++ /dev/null
@@ -1,15 +0,0 @@
-package atlantis.interactions;
-
-
-public class AVPSelectionGroup extends AInteractionGroup {
-
- private ARectangleVPSelection rectangleVPSelection;
-
- public AVPSelectionGroup(AInteractionsManager iManager) {
- super(AInteractionGroup.WINDOW_GROUP, iManager);
-
- rectangleVPSelection=new ARectangleVPSelection();
- addInteraction(rectangleVPSelection);
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/interactions/AWindowInfoInteraction.java b/graphics/AtlantisJava/src/atlantis/interactions/AWindowInfoInteraction.java
deleted file mode 100755
index 80d439b8e5f..00000000000
--- a/graphics/AtlantisJava/src/atlantis/interactions/AWindowInfoInteraction.java
+++ /dev/null
@@ -1,73 +0,0 @@
-package atlantis.interactions;
-
-import java.awt.Color;
-import java.awt.Graphics2D;
-import java.awt.Point;
-import java.awt.geom.Point2D;
-
-import atlantis.graphics.ACursorFactory;
-
-public class AWindowInfoInteraction extends AInteraction implements AMouseDragListener, AEnterExitListener
-{
- // private int width=64;
- private Point pickedPoint;
- private Color c;
-
- public AWindowInfoInteraction()
- {
- super(1, AUTOMATIC_REPAINT, SCREEN_COORDINATES, true);
-
- this.c = Color.white;
-
- // hr[0] = new Rectangle2D.Double(x, y, width, width);
- pickedPoint = new Point(0, 0);
- }
-
- public int getButton()
- {
- return AInteractionsManager.LEFT;
- }
-
- public void paint(Graphics2D g)
- {
- g.setColor(c);
- g.fill(hr[0]);
-
- /*
- * g.fillRect(hr[0].getX(), hr[0].getY(), hr[0].getWidth(),
- * hr[0].getHeight());
- */
- }
-
- public void start(Point2D.Double p, int region, int key)
- {
- pickedPoint.setLocation(p.x - hr[0].getX(), p.y - hr[0].getY());
- }
-
- public void drag(Point2D.Double p, int region, int key)
- {
- hr[0].setFrame(p.x - pickedPoint.x, p.y - pickedPoint.y, hr[0].getWidth(), hr[0].getHeight());
- }
-
- public void stop()
- {}
-
- public void cancel()
- {}
-
- public void entered()
- {
- window.setCursor(ACursorFactory.getInstance().getDefaultCursor());
- }
-
- public void exited()
- {
- window.setCursor(ACursorFactory.getInstance().getDefaultCursor());
- }
-
- public int getPopupType()
- {
- return APopupListener.REGION_POPUP;
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/interactions/AXSkewSelection.java b/graphics/AtlantisJava/src/atlantis/interactions/AXSkewSelection.java
deleted file mode 100755
index 1aac47fd38e..00000000000
--- a/graphics/AtlantisJava/src/atlantis/interactions/AXSkewSelection.java
+++ /dev/null
@@ -1,124 +0,0 @@
-package atlantis.interactions;
-
-
-import java.awt.*;
-import java.awt.geom.*;
-
-
-/**
- * A panel which selects a parallogram-shaped region in which two
- * sides are parallel to the y-axis and the other two are skewed with
- * respect to the x-axis.
- *
- * @author Charles Loomis
- **/
-public class AXSkewSelection extends ASelection {
-
- final private static int STARTING_WIDTH=25;
-
- public AXSkewSelection() {
- super(6);
- }
-
- /**
- * Initialize the control points based in the starting point
- */
- public int init(Point2D.Double p, int key) {
- isValid=false;
-
- setCenter(hr[0], p.x-STARTING_WIDTH, p.y);
- setCenter(hr[1], p.x-STARTING_WIDTH, p.y);
- setCenter(hr[2], p.x+STARTING_WIDTH, p.y);
- setCenter(hr[3], p.x+STARTING_WIDTH, p.y);
- setCenter(hr[4], p.x, p.y);
- setCenter(hr[5], p.x, p.y);
-
- region=5;
- return region;
- }
-
- /**
- * Move the active control point to the point (x,y).
- */
- public void drag(Point2D.Double p, int region, int key) {
- isValid=true;
-
- double width;
-
- // Change what is done depending on which control point is active.
- switch(region) {
- case 0:
- width=p.x-hr[4].getCenterX();
- setCenterX(hr[0], hr[4].getCenterX()+width);
- setCenterX(hr[1], hr[5].getCenterX()+width);
- setCenterX(hr[2], hr[5].getCenterX()-width);
- setCenterX(hr[3], hr[4].getCenterX()-width);
- break;
-
- case 1:
- width=p.x-hr[5].getCenterX();
- setCenterX(hr[0], hr[4].getCenterX()+width);
- setCenterX(hr[1], hr[5].getCenterX()+width);
- setCenterX(hr[2], hr[5].getCenterX()-width);
- setCenterX(hr[3], hr[4].getCenterX()-width);
- break;
-
- case 2:
- width=p.x-hr[5].getCenterX();
- setCenterX(hr[0], hr[4].getCenterX()-width);
- setCenterX(hr[1], hr[5].getCenterX()-width);
- setCenterX(hr[2], hr[5].getCenterX()+width);
- setCenterX(hr[3], hr[4].getCenterX()+width);
- break;
-
- case 3:
- width=p.x-hr[4].getCenterX();
- setCenterX(hr[0], hr[4].getCenterX()-width);
- setCenterX(hr[1], hr[5].getCenterX()-width);
- setCenterX(hr[2], hr[5].getCenterX()+width);
- setCenterX(hr[3], hr[4].getCenterX()+width);
- break;
-
- case 4:
- width=hr[4].getCenterX()-hr[0].getCenterX();
- setCenter(hr[region], p.x, p.y);
- setCenter(hr[0], p.x-width, p.y);
- setCenter(hr[3], p.x+width, p.y);
- break;
-
- case 5:
- width=hr[4].getCenterX()-hr[0].getCenterX();
- setCenter(hr[region], p.x, p.y);
- setCenter(hr[1], p.x-width, p.y);
- setCenter(hr[2], p.x+width, p.y);
- break;
- }
- }
-
- public void paint(Graphics2D g) {
- paintStandard(g);
- }
-
- /**
- * Make the affine transform which corresponds to this skewed region.
- */
- public Point2D.Double[] getCorners() {
- int first=getUpperLeftRegion();
-
- // Calculate which is the opposite corner.
- int third=(first+2)%4;
-
- // Now use the cross-product to determine which of the
- // remaining points is the one which keep the path going clockwise.
- int second=(first+1)%4;
- double dx0=hr[third].getCenterX()-hr[first].getCenterX();
- double dy0=hr[third].getCenterY()-hr[first].getCenterY();
- double dx1=hr[second].getCenterX()-hr[first].getCenterX();
- double dy1=hr[second].getCenterY()-hr[first].getCenterY();
-
- if(dx0*dy1-dy0*dx1>0) second=(first+3)%4;
-
- return convert(first, second, third);
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/interactions/AXSliceSelection.java b/graphics/AtlantisJava/src/atlantis/interactions/AXSliceSelection.java
deleted file mode 100755
index 596f81aa6e8..00000000000
--- a/graphics/AtlantisJava/src/atlantis/interactions/AXSliceSelection.java
+++ /dev/null
@@ -1,79 +0,0 @@
-package atlantis.interactions;
-
-
-import java.awt.*;
-import java.awt.geom.*;
-
-
-/**
- * A panel which selects a slice of the window in the x-direction.
- * That is, it selects a rectangular region with a height equal to the
- * full height of the window and with an adjustable width.
- *
- * @author Charles Loomis
- **/
-public class AXSliceSelection extends ASelection {
-
- public AXSliceSelection() {
- super(6);
- }
-
- public int init(Point2D.Double p, int key) {
- isValid=false;
-
- int ymax=window.getSize().height;
- int ymid=ymax/2;
-
- setCenter(hr[0], p.x, 0);
- setCenter(hr[1], p.x, 0);
- setCenter(hr[2], p.x, ymax);
- setCenter(hr[3], p.x, ymax);
- setCenter(hr[4], p.x, ymid);
- setCenter(hr[5], p.x, ymid);
-
- region=5;
- return region;
- }
-
- public void drag(Point2D.Double p, int region, int key) {
- isValid=true;
-
- switch(region) {
- case 0:
- case 3:
- case 4:
- setCenterX(hr[0], p.x);
- setCenterX(hr[3], p.x);
- setCenterX(hr[4], p.x);
- break;
-
- case 1:
- case 2:
- case 5:
- setCenterX(hr[1], p.x);
- setCenterX(hr[2], p.x);
- setCenterX(hr[5], p.x);
- break;
- }
- }
-
- public void paint(Graphics2D g) {
- paintStandard(g);
- }
-
- public Point2D.Double[] getCorners() {
- // Sort out which are the three control points.
- int first=0;
- int second=1;
- int third=2;
-
- if(hr[1].getCenterX()<hr[0].getCenterX()) {
- first=1;
- second=0;
- third=3;
- }
-
- return convert(first, second, third);
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/interactions/AYSkewSelection.java b/graphics/AtlantisJava/src/atlantis/interactions/AYSkewSelection.java
deleted file mode 100755
index 9e98bde0f40..00000000000
--- a/graphics/AtlantisJava/src/atlantis/interactions/AYSkewSelection.java
+++ /dev/null
@@ -1,124 +0,0 @@
-package atlantis.interactions;
-
-
-import java.awt.*;
-import java.awt.geom.*;
-
-
-/**
- * A panel which selects a parallogram-shaped region in which two
- * sides are parallel to the y-axis and the other two are skewed with
- * respect to the x-axis.
- *
- * @author Charles Loomis
- **/
-public class AYSkewSelection extends ASelection {
-
- final private static int STARTING_WIDTH=25;
-
- public AYSkewSelection() {
- super(6);
- }
-
- /**
- * Initialize the control points based in the starting point
- */
- public int init(Point2D.Double p, int key) {
- isValid=false;
-
- setCenter(hr[0], p.x, p.y-STARTING_WIDTH);
- setCenter(hr[1], p.x, p.y-STARTING_WIDTH);
- setCenter(hr[2], p.x, p.y+STARTING_WIDTH);
- setCenter(hr[3], p.x, p.y+STARTING_WIDTH);
- setCenter(hr[4], p.x, p.y);
- setCenter(hr[5], p.x, p.y);
-
- region=5;
- return region;
- }
-
- /**
- * Move the active control point to the point (x,y).
- */
- public void drag(Point2D.Double p, int region, int key) {
- isValid=true;
-
- double width;
-
- // Change what is done depending on which control point is active.
- switch(region) {
- case 0:
- width=p.y-hr[4].getCenterY();
- setCenterY(hr[0], hr[4].getCenterY()+width);
- setCenterY(hr[1], hr[5].getCenterY()+width);
- setCenterY(hr[2], hr[5].getCenterY()-width);
- setCenterY(hr[3], hr[4].getCenterY()-width);
- break;
-
- case 1:
- width=p.y-hr[5].getCenterY();
- setCenterY(hr[0], hr[4].getCenterY()+width);
- setCenterY(hr[1], hr[5].getCenterY()+width);
- setCenterY(hr[2], hr[5].getCenterY()-width);
- setCenterY(hr[3], hr[4].getCenterY()-width);
- break;
-
- case 2:
- width=p.y-hr[5].getCenterY();
- setCenterY(hr[0], hr[4].getCenterY()-width);
- setCenterY(hr[1], hr[5].getCenterY()-width);
- setCenterY(hr[2], hr[5].getCenterY()+width);
- setCenterY(hr[3], hr[4].getCenterY()+width);
- break;
-
- case 3:
- width=p.y-hr[4].getCenterY();
- setCenterY(hr[0], hr[4].getCenterY()-width);
- setCenterY(hr[1], hr[5].getCenterY()-width);
- setCenterY(hr[2], hr[5].getCenterY()+width);
- setCenterY(hr[3], hr[4].getCenterY()+width);
- break;
-
- case 4:
- width=hr[4].getCenterY()-hr[0].getCenterY();
- setCenter(hr[region], p.x, p.y);
- setCenter(hr[0], p.x, p.y-width);
- setCenter(hr[3], p.x, p.y+width);
- break;
-
- case 5:
- width=hr[4].getCenterY()-hr[0].getCenterY();
- setCenter(hr[region], p.x, p.y);
- setCenter(hr[1], p.x, p.y-width);
- setCenter(hr[2], p.x, p.y+width);
- break;
- }
- }
-
- public void paint(Graphics2D g) {
- paintStandard(g);
- }
-
- /**
- * Make the affine transform which corresponds to this skewed region.
- */
- public Point2D.Double[] getCorners() {
- int first=getUpperLeftRegion();
-
- // Calculate which is the opposite corner.
- int third=(first+2)%4;
-
- // Now use the cross-product to determine which of the
- // remaining points is the one which keep the path going clockwise.
- int second=(first+1)%4;
- double dx0=hr[third].getCenterX()-hr[first].getCenterX();
- double dy0=hr[third].getCenterY()-hr[first].getCenterY();
- double dx1=hr[second].getCenterX()-hr[first].getCenterX();
- double dy1=hr[second].getCenterY()-hr[first].getCenterY();
-
- if(dx0*dy1-dy0*dx1>0) second=(first+3)%4;
-
- return convert(first, second, third);
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/interactions/AYSliceSelection.java b/graphics/AtlantisJava/src/atlantis/interactions/AYSliceSelection.java
deleted file mode 100755
index 41c0a8293cd..00000000000
--- a/graphics/AtlantisJava/src/atlantis/interactions/AYSliceSelection.java
+++ /dev/null
@@ -1,79 +0,0 @@
-package atlantis.interactions;
-
-
-import java.awt.*;
-import java.awt.geom.*;
-
-
-/**
- * A panel which selects a slice of the window in the x-direction.
- * That is, it selects a rectangular region with a height equal to the
- * full height of the window and with an adjustable width.
- *
- * @author Charles Loomis
- **/
-public class AYSliceSelection extends ASelection {
-
- public AYSliceSelection() {
- super(6);
- }
-
- public int init(Point2D.Double p, int key) {
- isValid=false;
-
- int xmax=window.getSize().width;
- int xmid=xmax/2;
-
- setCenter(hr[0], 0, p.y);
- setCenter(hr[1], 0, p.y);
- setCenter(hr[2], xmax, p.y);
- setCenter(hr[3], xmax, p.y);
- setCenter(hr[4], xmid, p.y);
- setCenter(hr[5], xmid, p.y);
-
- region=5;
- return region;
- }
-
- public void drag(Point2D.Double p, int region, int key) {
- isValid=true;
-
- switch(region) {
- case 0:
- case 3:
- case 4:
- setCenterY(hr[0], p.y);
- setCenterY(hr[3], p.y);
- setCenterY(hr[4], p.y);
- break;
-
- case 1:
- case 2:
- case 5:
- setCenterY(hr[1], p.y);
- setCenterY(hr[2], p.y);
- setCenterY(hr[5], p.y);
- break;
- }
- }
-
- public void paint(Graphics2D g) {
- paintStandard(g);
- }
-
- public Point2D.Double[] getCorners() {
- // Sort out which are the three control points.
- int first=1;
- int second=2;
- int third=3;
-
- if(hr[1].getCenterY()>hr[0].getCenterY()) {
- first=0;
- second=3;
- third=2;
- }
-
- return convert(first, second, third);
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/interactions/AZMRGroup.java b/graphics/AtlantisJava/src/atlantis/interactions/AZMRGroup.java
deleted file mode 100755
index 9b6903d9fb4..00000000000
--- a/graphics/AtlantisJava/src/atlantis/interactions/AZMRGroup.java
+++ /dev/null
@@ -1,14 +0,0 @@
-package atlantis.interactions;
-
-
-public class AZMRGroup extends AInteractionGroup {
-
- private AZMRInteraction transformInteraction;
-
- public AZMRGroup(AInteractionsManager iManager) {
- super(AInteractionGroup.WINDOW_GROUP, iManager);
- transformInteraction=new AZMRInteraction();
- this.addInteraction(transformInteraction);
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/interactions/AZMRInteraction.java b/graphics/AtlantisJava/src/atlantis/interactions/AZMRInteraction.java
deleted file mode 100755
index db82da56f33..00000000000
--- a/graphics/AtlantisJava/src/atlantis/interactions/AZMRInteraction.java
+++ /dev/null
@@ -1,700 +0,0 @@
-package atlantis.interactions;
-
-import java.awt.Color;
-import java.awt.Graphics2D;
-import java.awt.event.ActionEvent;
-import java.awt.event.ActionListener;
-import java.awt.event.KeyEvent;
-import java.awt.geom.Ellipse2D;
-import java.awt.geom.Line2D;
-import java.awt.geom.Point2D;
-
-import javax.swing.JMenuItem;
-
-import atlantis.canvas.ACanvas;
-import atlantis.canvas.AWindow;
-import atlantis.event.AEventManager;
-import atlantis.graphics.ACursorFactory;
-import atlantis.output.ALogInterface;
-import atlantis.output.AOutput;
-import atlantis.parameters.APar;
-import atlantis.parameters.AParameter;
-import atlantis.projection.AProjection;
-import atlantis.projection.AProjection2D;
-import atlantis.projection.AProjection3D;
-import atlantis.projection.AProjectionFR;
-import atlantis.projection.AProjectionFZ;
-import atlantis.projection.AProjectionLegoPlot;
-import atlantis.projection.AProjectionRZ;
-import atlantis.projection.AProjectionVP;
-import atlantis.projection.AProjectionXZ;
-import atlantis.projection.AProjectionYX;
-import atlantis.projection.AProjectionYZ;
-import atlantis.utils.AMath;
-import atlantis.utils.AVector;
-
-/**
- * The Zoom, Move and Rotate interaction.
- */
-public class AZMRInteraction extends AInteraction implements
- ASleepMouseDragListener, AMousePressListener, AEnterExitListener, ActionListener
-{
- // when these values are reached on any of the coordinates, zooming takes
- // no longer any effect
- private static final double MINIMAL_ZOOM_LIMIT = 0.001; // [cm] = 10 um
- private static final double MAXIMAL_ZOOM_LIMIT = 100000; // [cm] = 1000 m
-
- private static final int ZOOM_MODE = 0;
- private static final int HORIZONTAL_ZOOM_MODE = 1;
- private static final int VERTICAL_ZOOM_MODE = 2;
- private static final int ROTATE_MODE = 3;
- private static final int MOVE_MODE = 5;
-
- private int centerMarkRadius = 6;
- private Point2D.Double p0;
- private int previousKey = KeyEvent.VK_UNDEFINED;
- private int mode;
- private JMenuItem[] popupItems;
- private final static String TO_CENTER_OF_DETECTOR = "To Center Of Detector";
- private final static String CENTER_PICTURE = "Center The Picture";
- private final static String ASPECT_RATIO_1 = "Aspect Ratio 1";
- private final static String UNZOOM_FULL = "Unzoom Full";
-
- // if false, none of the ZMR interactions will have the red central dot
- // painted
- private static boolean paintCenterDot = true;
-
- public AZMRInteraction()
- {
- super(1, AUTOMATIC_REPAINT, WORLD_COORDINATES, false);
-
- popupItems = new JMenuItem[] {
- new JMenuItem(TO_CENTER_OF_DETECTOR),
- new JMenuItem(CENTER_PICTURE),
- new JMenuItem(UNZOOM_FULL)};
-
- for (int i = 0; i < popupItems.length; i++) {
- popupItems[i].addActionListener(this);
- }
-
- // The center of the ellipse is in (0, 0) in User Space
- hr[0] = new Ellipse2D.Double(-centerMarkRadius / 2,
- -centerMarkRadius / 2, centerMarkRadius, centerMarkRadius);
-
- //By default we are in zoom mode
- mode = ZOOM_MODE;
- }
-
- public static void setPaintCenterDot(boolean state)
- {
- paintCenterDot = state;
- }
-
- public void connect(AInteractionsManager manager)
- {
- super.connect(manager);
- Point2D.Double c = ((AProjection2D) window.getProjection()).getCenter();
-
- setCenter(hr[0], c.x, c.y);
- }
-
- public int getPressButton()
- {
- return AInteractionsManager.LEFT;
- }
-
- public int init(Point2D.Double p, int key)
- {
- keyChange(p, key);
- return -1;
- }
-
- public void pressed(Point2D.Double p, int button, int key)
- {
- if (key == KeyEvent.VK_C)
- setCenter(hr[0], p.x, p.y);
- if (key == KeyEvent.VK_0){
- double[] primaryVertex = AEventManager.instance().getCurrentEvent().getPrimaryVertex();
- if(window.getProjection().getName().equals("YX")) setCenter(hr[0], primaryVertex[0], primaryVertex[1]);
- if(window.getProjection().getName().equals("RZ")) {
- double phiMid2 = Math.toRadians(parameterStore.get("RZ", "Phi").getD());
- double phiDiff = Math.abs(Math.atan2(primaryVertex[1], primaryVertex[0]) - phiMid2);
- int s=-1;
- if (phiDiff < Math.PI / 2. || phiDiff > 3 * Math.PI / 2.) s = 1;
- setCenter(hr[0], primaryVertex[2], s*Math.sqrt(primaryVertex[0]*primaryVertex[0]+primaryVertex[1]*primaryVertex[1]));
- }
- }
- }
-
- public int getButton()
- {
- return AInteractionsManager.LEFT;
- }
-
- public void start(Point2D.Double p, int region, int key)
- {}
-
- private double getHd0(Point2D.Double p)
- {
- Point2D.Double[] c = window.getUserCorners();
- AVector v21 = new AVector(c[2].x, c[2].y, c[1].x, c[1].y);
- AVector v10 = new AVector(c[1].x, c[1].y, c[0].x, c[0].y);
- Point2D.Double center = getCenter(hr[0]);
-
- return p.distance(AMath.intersectionPoint(center, v21, p, v10));
- }
-
- private double getVd0(Point2D.Double p)
- {
- Point2D.Double[] c = window.getUserCorners();
- AVector v01 = new AVector(c[0].x, c[0].y, c[1].x, c[1].y);
- AVector v12 = new AVector(c[1].x, c[1].y, c[2].x, c[2].y);
- Point2D.Double center = getCenter(hr[0]);
-
- return p.distance(AMath.intersectionPoint(center, v01, p, v12));
- }
-
- private void keyChange(Point2D.Double p, int key)
- {
- p0 = p;
-
- switch (key)
- {
- case KeyEvent.VK_UNDEFINED:
- mode = ZOOM_MODE;
- break;
-
- case KeyEvent.VK_H:
- mode = HORIZONTAL_ZOOM_MODE;
- break;
-
- case KeyEvent.VK_V:
- mode = VERTICAL_ZOOM_MODE;
- break;
-
- case KeyEvent.VK_R:
- mode = ROTATE_MODE;
- break;
-
- case KeyEvent.VK_M:
- mode = MOVE_MODE;
- break;
-
- case KeyEvent.VK_Z:
- mode = ZOOM_MODE;
- break;
- }
-
- //Update cursor mode when key changes
- setCursorMode();
- }
-
- public void drag(Point2D.Double p, int region, int key)
- {
-
- if (key != previousKey)
- {
- keyChange(p, key);
- previousKey = key;
- }
-
- double zf;
- Point2D.Double center = getCenter(hr[0]);
- AProjection proj = window.getProjection();
-
- switch (mode)
- {
- case ZOOM_MODE:
- zf = p0.distance(center.x, center.y)
- / p.distance(center.x, center.y);
- performZoom(getCenter(hr[0]), zf, window);
- break;
-
- case HORIZONTAL_ZOOM_MODE:
- zf = getHd0(p0) / getHd0(p);
- performHorizontalZoom(center, zf, window);
- break;
-
- case VERTICAL_ZOOM_MODE:
- zf = getVd0(p0) / getVd0(p);
- performVerticalZoom(center, zf, window);
- break;
-
- case ROTATE_MODE:
- if ((proj instanceof AProjectionFR)
- || (proj instanceof AProjectionFZ)
- || (proj instanceof AProjectionVP))
- performPhiRotation(p.y - p0.y, window);
- else if (proj instanceof AProjectionLegoPlot)
- performLegoRotation(center, p.x - p0.x, p.y - p0.y, window);
- else
- {
- if ((proj instanceof AProjectionRZ)
- || (proj instanceof AProjectionXZ)
- || (proj instanceof AProjectionYZ)
- || (proj instanceof AProjection3D))
- {
- AParameter phiPar = parameterStore.get(proj.getName(), "Phi");
- if (proj instanceof AProjection3D)
- {
- Point2D.Double pDisp = window.calculateDisplay(p);
- Point2D.Double p0Disp = window.calculateDisplay(p0);
- double height = window.getCurrDisp().getHeight();
- double deltaV = pDisp.getY() - p0Disp.getY();
- phiPar.setD(adjustPhi(phiPar.getD() + 360. * deltaV
- / height));
- }
- else
- phiPar.setD(adjustPhi(phiPar.getD() + (p.y - p0.y)));
- p0 = p;
- ACanvas.getCanvas().repaintAllFromScratch();
- }
- else
- {
- double alpha = AMath.getAngle(p0, center)
- - AMath.getAngle(p, center);
-
- performRotation(alpha, center, window);
- if (proj instanceof AProjectionYX)
- {
- AParameter phiPar = parameterStore.get(proj.getName(), "Phi");
-
- phiPar.setD(adjustPhi(phiPar.getD() + Math.toDegrees(alpha)));
- }
- }
- }
- break;
-
- case MOVE_MODE:
- if ((proj instanceof AProjectionFR)
- || (proj instanceof AProjectionFZ)
- || (proj instanceof AProjectionVP))
- {
- performMove(p.x - p0.x, 0, window);
- performPhiRotation(p.y - p0.y, window);
- }
- else
- performMove(p.x - p0.x, p.y - p0.y, window);
- break;
- }
- } // drag()
- // ---------------------------------------------------------------
-
- private double adjustPhi(double phi)
- {
- while (phi < 0)
- phi += 360;
- while (phi > 360)
- phi -= 360;
- return phi;
- }
-
- public void stop()
- {}
-
- public void cancel()
- {}
-
- public void paint(Graphics2D g)
- {
- Point2D.Double p = window.calculateDisplay(getCenter(hr[0]));
-
- //don't draw red dot if not drawing the lego plot
- //(i.e. when just drawing the legend)
- boolean paintingJustLegoLegend = false;
- if(window.getProjection().getName().equals("LegoPlot"))
- {
- parameterStore.selectWindowParameters(window.getName());
- if(!parameterStore.get("LegoPlot","DrawPlot").getStatus())
- paintingJustLegoLegend=true;
- parameterStore.restoreWindowParameters();
- }
-
- if (paintCenterDot && !paintingJustLegoLegend)
- {
- g.setColor(Color.red);
- g.fillOval((int) (p.x - centerMarkRadius / 2),
- (int) (p.y - centerMarkRadius / 2), centerMarkRadius,
- centerMarkRadius);
- }
- }
-
- /**
- * Check the coordinates of the corners. If any of the limits was already
- * reached, zooming / unzooming takes no longer any effect.
- *
- * @param corners Double
- * @return boolean
- */
- private static boolean checkCornerLimits(Point2D.Double[] corners)
- {
-
- for (int i = 0; i < corners.length; i++)
- {
- //Get the difference in x and y off this corner and the next
- //There is at most 3 corners - this will give us all of the combinations
- double dX=Math.abs(corners[i].x-corners[(i+1)%(corners.length-1)].x);
- double dY=Math.abs(corners[i].y-corners[(i+1)%(corners.length-1)].y);
- //Coordinates will differ in only x OR y, get the one that does
- double dMax = Math.max(dX,dY);
- //Check that corner coordinate difference is within limits
- if ((dMax < MINIMAL_ZOOM_LIMIT) || (dMax > MAXIMAL_ZOOM_LIMIT))
- {
- AOutput.alwaysAppend("zoom / unzoom limit reached\n",
- ALogInterface.NORMAL);
- return false;
- }
- }
- return true;
- } // checkTheCornerLimits()
-
-
- public static void performZoom(Point2D.Double center, double zf,
- AWindow window)
- {
- Point2D.Double[] corners = window.getUserCorners();
-
- for (int i = 0; i < corners.length; i++)
- {
- corners[i].x = center.x + (corners[i].x - center.x) * zf;
- corners[i].y = center.y + (corners[i].y - center.y) * zf;
- }
-
- if (!checkCornerLimits(corners))
- {
- return; // zooming has already reached its limit
- }
-
- window.setUserCorners(corners);
- }
-
- public static void performRotation(double angle, Point2D.Double center,
- AWindow window)
- {
- Point2D.Double[] corners = window.getUserCorners();
-
- double cos = Math.cos(angle);
- double sin = Math.sin(angle);
-
- for (int i = 0; i < corners.length; i++)
- {
- double dx = corners[i].x - center.x;
- double dy = corners[i].y - center.y;
-
- corners[i].x = center.x + dx * cos - dy * sin;
- corners[i].y = center.y + dx * sin + dy * cos;
- }
-
- window.setUserCorners(corners);
- }
-
- public static void performMinus90Rotation(AWindow window)
- {
- Point2D.Double[] corners = window.getUserCorners();
-
- AVector v12 = new AVector(corners[1], corners[2]);
- double x3 = corners[0].x + v12.dx;
- double y3 = corners[0].y + v12.dy;
-
- corners[0].setLocation(corners[1]);
- corners[1].setLocation(corners[2]);
- corners[2].setLocation(x3, y3);
-
- window.setUserCorners(corners);
- }
-
- public static void performPlus90Rotation(AWindow window)
- {
- Point2D.Double[] corners = window.getUserCorners();
-
- AVector v12 = new AVector(corners[1], corners[2]);
- double x3 = corners[0].x + v12.dx;
- double y3 = corners[0].y + v12.dy;
-
- corners[2].setLocation(corners[1].x, corners[1].y);
- corners[1].setLocation(corners[0].x, corners[0].y);
- corners[0].setLocation(x3, y3);
-
- window.setUserCorners(corners);
- }
-
- public static void performPhiRotation(double dPhi, AWindow window)
- {
- Point2D.Double[] corners = window.getUserCorners();
-
- for (int i = 0; i < corners.length; i++)
- corners[i].y -= dPhi;
-
- window.setUserCorners(corners);
- }
-
- public void performLegoRotation(Point2D.Double center, double dPhi,
- double dEta, AWindow window)
- {
- Point2D.Double[] corners = window.getUserCorners();
-
- if (dPhi != 0.0 || dEta != 0.0)
- {
- //get original phi coord in 0-360 range
- double centerX = -AProjectionLegoPlot.adjustPhi(window, -center.x, center.y);
-
- corners[0].x -= (dPhi);
- // x offset=xz*360 so xz=change/360
- AProjectionLegoPlot.setxz(window.getIndex(), AProjectionLegoPlot
- .getxz(window.getIndex())
- + (dPhi) / 360);
-
- if (AProjectionLegoPlot.getyz(window.getIndex()) < 1.0
- || (dEta) > 0.0)
- {
- corners[0].y -= (dEta);
- corners[1].y -= (dEta);
- // y offset=yz*50 so yz=change/50
- AProjectionLegoPlot.setyz(window.getIndex(),
- AProjectionLegoPlot.getyz(window.getIndex()) - (dEta)
- / 50);
- }
-
- //now have changed xz recalcuate phi coordinte
- center.x = AProjectionLegoPlot.adjustPhi(window, centerX, center.y);
- setCenter(hr[0], center.x, center.y);
-
- window.setUserCorners(corners);
- }
- }
-
- public static void performHorizontalZoom(Point2D.Double center, double f,
- AWindow window)
- {
- Point2D.Double[] c = window.getUserCorners();
- AVector v21 = new AVector(c[2].x, c[2].y, c[1].x, c[1].y);
- Point2D.Double center1 = new Point2D.Double(center.x + v21.dx, center.y
- + v21.dy);
- Point2D.Double p0 = AMath
- .intersectionPoint(c[0], c[1], center, center1);
-
- AVector v0 = new AVector(p0, c[0]).scale(f);
- AVector v1 = new AVector(p0, c[1]).scale(f);
-
- c[0].x = p0.x + v0.dx;
- c[0].y = p0.y + v0.dy;
-
- c[1].x = p0.x + v1.dx;
- c[1].y = p0.y + v1.dy;
-
- v21.invert();
- p0.setLocation(p0.x + v21.dx, p0.y + v21.dy);
- c[2].x = p0.x + v1.dx;
- c[2].y = p0.y + v1.dy;
-
- if (!checkCornerLimits(c))
- {
- return; // zooming has already reached its limit
- }
-
- window.setUserCorners(c);
-
- }
-
- public static void performVerticalZoom(Point2D.Double center, double f,
- AWindow window)
- {
- Point2D.Double[] c = window.getUserCorners();
- AVector v01 = new AVector(c[0].x, c[0].y, c[1].x, c[1].y);
- Point2D.Double center1 = new Point2D.Double(center.x + v01.dx, center.y
- + v01.dy);
- Point2D.Double p0 = AMath
- .intersectionPoint(c[1], c[2], center, center1);
-
- AVector v1 = new AVector(p0, c[1]).scale(f);
- AVector v2 = new AVector(p0, c[2]).scale(f);
-
- c[1].x = p0.x + v1.dx;
- c[1].y = p0.y + v1.dy;
-
- c[2].x = p0.x + v2.dx;
- c[2].y = p0.y + v2.dy;
-
- v01.invert();
- p0.setLocation(p0.x + v01.dx, p0.y + v01.dy);
- c[0].x = p0.x + v1.dx;
- c[0].y = p0.y + v1.dy;
-
- if (!checkCornerLimits(c))
- {
- return; // zooming has already reached its limit
- }
-
- window.setUserCorners(c);
-
- }
-
- public static void performMove(double dx, double dy, AWindow window)
- {
- Point2D.Double[] corners = window.getUserCorners();
-
- for (int i = 0; i < corners.length; i++)
- {
- corners[i].x -= dx;
- corners[i].y -= dy;
- }
-
- window.setUserCorners(corners);
- }
-
- public static Line2D.Double getMiddleHorizontalLine(AWindow window)
- {
- Point2D.Double[] corners = window.getUserCorners();
- AVector v12 = new AVector(corners[1], corners[2]).scale(0.5);
-
- return new Line2D.Double(corners[0].x + v12.dx, corners[0].y + v12.dy,
- corners[1].x + v12.dx, corners[1].y + v12.dy);
- }
-
- public static Line2D.Double getMiddleVerticalLine(AWindow window)
- {
- Point2D.Double[] corners = window.getUserCorners();
- AVector v10 = new AVector(corners[1], corners[0]).scale(0.5);
-
- return new Line2D.Double(corners[1].x + v10.dx, corners[1].y + v10.dy,
- corners[2].x + v10.dx, corners[2].y + v10.dy);
- }
-
- public static void performFlip(Line2D.Double line, AWindow window)
- {
- if (line == null)
- return;
-
- Point2D.Double[] corners = window.getUserCorners();
- double dSquare = Point2D.distanceSq(line.x1, line.y1, line.x2, line.y2);
-
- for (int i = 0; i < corners.length; i++)
- {
- double u = (1 / dSquare)
- * ((corners[i].x - line.x1) * (line.x2 - line.x1) + (corners[i].y - line.y1)
- * (line.y2 - line.y1));
-
- double x0 = line.x1 + u * (line.x2 - line.x1);
- double y0 = line.y1 + u * (line.y2 - line.y1);
-
- corners[i].x = 2 * x0 - corners[i].x;
- corners[i].y = 2 * y0 - corners[i].y;
- }
-
- window.setUserCorners(corners);
- }
-
- /**
- * Set cursor acording to current mode
- */
- public void setCursorMode(){
- //check which mode we have
- switch (mode)
- {
- case ZOOM_MODE:
- window.setCursor(ACursorFactory.getInstance().getZoomCursor());
- break;
-
- case HORIZONTAL_ZOOM_MODE:
- window.setCursor(ACursorFactory.getInstance().getZoomCursor());
- break;
-
- case VERTICAL_ZOOM_MODE:
- window.setCursor(ACursorFactory.getInstance().getZoomCursor());
- break;
-
- case ROTATE_MODE:
- window.setCursor(ACursorFactory.getInstance().getRotateCursor());
- break;
-
- case MOVE_MODE:
- window.setCursor(ACursorFactory.getInstance().getMoveCursor());
- break;
- }
- }
-
- /**
- * Gets called each time we enter a window in which this interaction is active
- */
- public void entered()
- {
- //Set mouse cursor according to current mode
- setCursorMode();
- }
-
- /**
- * Gets called each time we leave a window in which this interaction is active
- */
- public void exited()
- {
- //Set mouse cursor
- window.setCursor(ACursorFactory.getInstance().getDefaultCursor());
- }
-
- public int getPopupType()
- {
- return APopupListener.WINDOW_POPUP;
- }
-
- public JMenuItem[] getPopupItems() {
- return popupItems;
- }
-
- public void actionPerformed(ActionEvent e)
- {
- String action = e.getActionCommand();
-
- if (action.equals(TO_CENTER_OF_DETECTOR))
- {
- Point2D.Double c = ((AProjection2D) window.getProjection())
- .getCenter();
-
- setCenter(hr[0], c.x, c.y);
- window.repaint();
- }
- else if (action.equals(CENTER_PICTURE))
- {
- Point2D.Double[] c = window.getUserCorners();
- AVector v02 = new AVector(c[0].x, c[0].y, c[2].x, c[2].y)
- .scale(0.5);
- double xc = c[0].x + v02.dx;
- double yc = c[0].y + v02.dy;
- AVector vC0 = new AVector(xc, yc, 0, 0);
- AProjection proj = window.getProjection();
- if (proj instanceof AProjectionLegoPlot)
- vC0 = new AVector(xc, yc, 180 * (1 - AProjectionLegoPlot
- .getxz(window.getIndex())), -5);
- // 180*(1-AProjectionLegoPlot.xz), -5 is different center as center
- // of plot is not at 0,0
-
- for (int i = 0; i < c.length; i++)
- {
- c[i].x += vC0.dx;
- c[i].y += vC0.dy;
- }
- window.setUserCorners(c);
- } else if (action.equals(ASPECT_RATIO_1)) {
- ((AProjection2D) window.getProjection()).setAspectRatio1(window);
- }
- else if (action.equals(UNZOOM_FULL))
- {
- window.setUserCorners(((AProjection2D) window.getProjection()).
- calculateNoZoomCorners(window.getSize()));
- }
- }
-
- public AModifier[] getModifiers()
- {
- return new AModifier[] {
- new AModifier(KeyEvent.VK_UNDEFINED, false, "Zoom"),
- new AModifier(KeyEvent.VK_Z, false, "Zoom"),
- new AModifier(KeyEvent.VK_H, false, "Horizonatal Zoom"),
- new AModifier(KeyEvent.VK_V, false, "Vertical Zoom"),
- new AModifier(KeyEvent.VK_R, false, "Rotate"),
- new AModifier(KeyEvent.VK_F, false, "Fast Zoom"),
- new AModifier(KeyEvent.VK_M, false, "Move (pan)"),
- new AModifier(KeyEvent.VK_C, false, "Modify Central Point")
- };
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/interactions/package.html b/graphics/AtlantisJava/src/atlantis/interactions/package.html
deleted file mode 100644
index 85cfaaddcc8..00000000000
--- a/graphics/AtlantisJava/src/atlantis/interactions/package.html
+++ /dev/null
@@ -1,11 +0,0 @@
-<html>
-<head></head>
-<body>
-<p>This package contains implementation of various interactions with
-the application such as the main ZMR (1Zoom Move Rotation), Fisheye,
-etc. Each AWindow has an AInteractionManager which tells the current
-interaction, e.g. ZMR, about what is happening with the mouse on that
-window.
-</p>
-</body>
-</html>
diff --git a/graphics/AtlantisJava/src/atlantis/list/AColorIcon.java b/graphics/AtlantisJava/src/atlantis/list/AColorIcon.java
deleted file mode 100755
index a77acc2917d..00000000000
--- a/graphics/AtlantisJava/src/atlantis/list/AColorIcon.java
+++ /dev/null
@@ -1,69 +0,0 @@
-package atlantis.list;
-
-
-import javax.swing.Icon;
-import java.awt.*;
-
-import atlantis.graphics.colormap.AColorMap;
-
-
-// icon with size and color
-
-class AColorIcon implements Icon {
- private int w, h;
- private int colorIndex;
-
- public AColorIcon() {
- this(AColorMap.WH, 50, 15);
- }
-
- public AColorIcon(Dimension d) {
- this.w=d.width;
- this.h=d.height;
- }
-
- public AColorIcon(int colorIndex, int w, int h) {
- this.colorIndex=colorIndex;
- this.w=w;
- this.h=h;
- }
-
- public void paintIcon(Component c, Graphics g, int x, int y) {
- g.setColor(Color.black);
- g.drawRect(x, y, w-1, h-1);
- if(colorIndex==AColorMap.INVISIBLE) {
- g.setColor(AColorMap.getColors()[AColorMap.WH]);
- g.fillRect(x+1, y+1, w-2, h-2);
- g.setColor(Color.black);
- g.drawLine(x, y, x+w-1, y+h-1);
- g.drawLine(x, y+h-1, x+w-1, y);
- } else if(colorIndex==AColorMap.NO_COLOR) {
- g.setColor(AColorMap.getColors()[AColorMap.WH]);
- g.fillRect(x+1, y+1, w-2, h-2);
- g.setColor(Color.black);
- int xc=x+w/2;
- int yc=y+h/2;
- g.drawLine(xc, yc-2, xc, yc+2);
- g.drawLine(xc-2, yc, xc+2, yc);
- } else {
- g.setColor(AColorMap.getColors()[colorIndex]);
- g.fillRect(x+1, y+1, w-2, h-2);
- }
- }
-
- public int getColorIndex() {
- return colorIndex;
- }
-
- public void setColorIndex(int colorIndex) {
- this.colorIndex=colorIndex;
- }
-
- public int getIconWidth() {
- return w;
- }
-
- public int getIconHeight() {
- return h;
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/list/AList.java b/graphics/AtlantisJava/src/atlantis/list/AList.java
deleted file mode 100755
index 7377bef99e9..00000000000
--- a/graphics/AtlantisJava/src/atlantis/list/AList.java
+++ /dev/null
@@ -1,128 +0,0 @@
-package atlantis.list;
-
-import atlantis.event.AData;
-
-/**
- * Instance of AList as seen in AListManager (Lists)
- * source references instance of the datatype in the list
- * <ul>
- * <li>itemsIndex is a list of indices (Atlantis internal datatitems indices)
- * of the particular datape which are in the list</li>
- * <li>itemsID is a list of dataitems IDs of the datatype in the list</li>
- * </ul>
- *
- * <p>index and id is identical for Track for instance, but different for
- * calo cells. When masking data on cross-event basis, IDs are necessary
- * (e.g. masking hot calo cells based on their IDs)</p>
- *
- * <p>Copyright: Copyright (c) 2002</p>
- *
- * @author not attributable
- * @version 1.0
- */
-public class AList
-{
- private AData source;
- private int[] itemsIndex;
- private int[] itemsID;
-
-
- /**
- *
- * @param data AData
- * @param singleItem int - index of the dataitem to put in the list
- */
- public AList(AData data, int singleItem)
- {
- source = data;
- itemsIndex = new int[] { singleItem };
- itemsID = new int[] { source.getIdFromIndex(singleItem) };
-
- } // AList() ------------------------------------------------------------
-
-
-
- public AList(AData data, boolean[] drawn)
- {
- source = data;
- int num = 0;
- for(int i = 0; i < drawn.length; ++i)
- {
- if(drawn[i])
- {
- num++;
- }
- }
-
- itemsIndex = new int[num];
- itemsID = new int[num];
- num = 0;
-
- for(int i = 0; i < drawn.length; ++i)
- {
- if(drawn[i])
- {
- itemsIndex[num] = i;
- itemsID[num] = source.getIdFromIndex(i);
- num++;
- }
- }
-
- } // AList() ------------------------------------------------------------
-
-
-
- /**
- * String representation of the AList instance. Returns the datatype name,
- * resp. screen name and if there one item in the only, then the item's
- * ID. If there are more items, it says the number of dataitems.
- * @return String
- */
- public String toString()
- {
- String key = source.getStoreGateKey();
- String sn = source.getNameScreenName();
- String name = key != null ? sn + ":" + key : sn;
-
- if(itemsIndex.length == 1)
- {
- return name + " " + source.getIdFromIndex(itemsIndex[0]);
- }
- else
- {
- return name + " (" + itemsIndex.length + " items)";
- }
-
- } // toString() ---------------------------------------------------------
-
-
-
- public AData getSource()
- {
- return source;
-
- } // getSource() --------------------------------------------------------
-
-
-
- /**
- * Returns indices of the items in the list (internal Atlantis indices
- * which are *sometimes* identical with IDs)
- * @return int[]
- */
- public int[] getItems()
- {
- return itemsIndex;
-
- } // getItems() ---------------------------------------------------------
-
-
-
- public int[] getItemsID()
- {
- return itemsID;
-
- } // getItemsID() -------------------------------------------------------
-
-
-} // class AList ============================================================
diff --git a/graphics/AtlantisJava/src/atlantis/list/AListManager.java b/graphics/AtlantisJava/src/atlantis/list/AListManager.java
deleted file mode 100755
index 815d922e087..00000000000
--- a/graphics/AtlantisJava/src/atlantis/list/AListManager.java
+++ /dev/null
@@ -1,1765 +0,0 @@
-package atlantis.list;
-
-import java.awt.Color;
-import java.awt.Component;
-import java.awt.Cursor;
-import java.awt.Dimension;
-import java.awt.Insets;
-import java.awt.Point;
-import java.awt.dnd.DragSource;
-import java.awt.event.ActionEvent;
-import java.awt.event.ActionListener;
-import java.awt.event.MouseEvent;
-import java.awt.event.MouseListener;
-import java.awt.event.MouseMotionListener;
-import java.util.ArrayList;
-import java.util.Collection;
-import java.util.Enumeration;
-import java.util.HashMap;
-import java.util.HashSet;
-import java.util.Iterator;
-import java.util.Set;
-
-import javax.swing.AbstractAction;
-import javax.swing.Action;
-import javax.swing.Box;
-import javax.swing.JButton;
-import javax.swing.JFrame;
-import javax.swing.JOptionPane;
-import javax.swing.JPanel;
-import javax.swing.JPopupMenu;
-import javax.swing.JScrollPane;
-import javax.swing.JTree;
-import javax.swing.tree.DefaultMutableTreeNode;
-import javax.swing.tree.DefaultTreeCellRenderer;
-import javax.swing.tree.DefaultTreeModel;
-import javax.swing.tree.MutableTreeNode;
-import javax.swing.tree.TreeNode;
-import javax.swing.tree.TreePath;
-
-import atlantis.canvas.ACanvas;
-import atlantis.data.AHelix;
-import atlantis.data.ARVxData;
-import atlantis.data.ATrackData;
-import atlantis.event.AData;
-import atlantis.event.AEvent;
-import atlantis.event.AEventManager;
-import atlantis.globals.AGlobals;
-import atlantis.graphics.ACursorFactory;
-import atlantis.graphics.AIcon;
-import atlantis.graphics.APickingGraphics2D;
-import atlantis.graphics.colormap.AColorMap;
-import atlantis.gui.AGUI;
-import atlantis.output.ALogInterface;
-import atlantis.output.AOutput;
-import atlantis.parameters.APar;
-import atlantis.utils.A4Vector;
-import atlantis.utils.ALogger;
-import atlantis.utils.AMath;
-import atlantis.utils.AUtilities;
-
-public class AListManager extends JTree implements MouseListener, MouseMotionListener
-{
- private static ALogger logger = ALogger.getLogger(AListManager.class);
- private static AEventManager eventManager = AEventManager.instance();
-
- // used to display the tree
- static private JFrame dialog; // rather than JDialog
- // special nodes
- static private final DefaultMutableTreeNode root = new DefaultMutableTreeNode("Lists");
- static private final DefaultMutableTreeNode highlight = new DefaultMutableTreeNode("Highlight");
- static private final DefaultMutableTreeNode lastDrawn = new DefaultMutableTreeNode("Last Drawn");
- static private final DefaultMutableTreeNode others = new DefaultMutableTreeNode("Others");
- static private final DefaultMutableTreeNode invisible = new DefaultMutableTreeNode("Invisible");
- static private final DefaultMutableTreeNode mass = new DefaultMutableTreeNode("Calculation");
- // instance
- static private final AListManager listManager = new AListManager();
- static private DefaultTreeModel dtm;
- static private int numLists = 0;
- // source and status of Drag and Drop
- static private DefaultMutableTreeNode source = null;
- static private boolean draging = false;
- static private HashMapSet nodeColors;
-
- // counters for V0 mass calc
- static private int V0vx=0;
- static private int V0tracks=0;
- static private int V0charge=0;
-
- // private static final Cursor DROP_VALID = DragSource.DefaultMoveDrop;
- private static final Cursor DROP_VALID_COPY = DragSource.DefaultCopyDrop;
- // private static final Cursor DROP_INVALID = DragSource.DefaultMoveNoDrop;
-
-
-
- private AListManager()
- {
- super(root, true);
- dtm = (DefaultTreeModel) getModel();
- nodeColors = new HashMapSet();
- reset();
-
- addMouseListener(this);
- addMouseMotionListener(this);
- setSelectionRow(1);
- setPreferredSize(new Dimension(200, 300));
- setRootVisible(true);
- setScrollsOnExpand(true);
- setShowsRootHandles(false);
- setCellRenderer(new ColorRenderer());
-
- if (!AGlobals.isAtlantisHeadless()) {
- // set up the visual representation
- dialog = new JFrame("List manager");
- AIcon.setIconImage(dialog);
- Box b = Box.createHorizontalBox();
- b.add(new JScrollPane(this));
- b.add(new ColorPanel());
- dialog.getContentPane().add(b);
- dialog.pack();
- dialog.setDefaultCloseOperation(JFrame.HIDE_ON_CLOSE);
- }
-
- } // AListManager() -----------------------------------------------------
-
-
-
- public static AListManager getInstance()
- {
- return listManager;
-
- } // getInstance() ------------------------------------------------------
-
-
-
- public void showLists()
- {
- Component gui = AGlobals.instance().getGuiFrame();
- if (gui != null)
- {
- dialog.setLocation(gui.getLocation());
- }
- dialog.setVisible(true);
-
- } // showLists() --------------------------------------------------------
-
-
-
- private boolean isAlreadyInTheList(AList list,
- DefaultMutableTreeNode destination)
- {
- boolean already = false;
- for(int i = 0; i < destination.getChildCount(); i++)
- {
- DefaultMutableTreeNode child =
- (DefaultMutableTreeNode) destination.getChildAt(i);
- if(!child.getAllowsChildren())
- {
- AList a = (AList) child.getUserObject();
- if(a.getSource() == list.getSource())
- {
- int[] items = a.getItems();
- int newItem = list.getItems()[0];
- for(int j = 0; j < items.length; ++j)
- {
- if(items[j] == newItem)
- {
- already = true;
- }
- }
- }
- }
- }
-
- return already;
-
- } // isAlreadyInTheList() -----------------------------------------------
-
-
-
- public void add(AList list)
- {
- if(!dialog.isVisible())
- {
- dialog.setVisible(true);
- }
-
- // default destination
- DefaultMutableTreeNode destination = root;
- TreePath tp = getSelectionPath();
- if(tp != null)
- {
- destination = (DefaultMutableTreeNode) tp.getLastPathComponent();
- }
-
- if(destination != null && destination.getAllowsChildren())
- {
- if(destination == others || destination == lastDrawn ||
- destination == highlight || destination == invisible ||
- destination == mass)
- {
- AOutput.alwaysAppend("Can't add to " + destination, ALogInterface.WARNING);
- return;
- }
-
- // check if it's already in the list and if so, don't add
- boolean already = this.isAlreadyInTheList(list, destination);
- if(already)
- {
- logger.info(list + " is already in this list, not added");
- }
- else
- {
- dtm.insertNodeInto(new DefaultMutableTreeNode(list, false),
- destination, destination.getChildCount());
- expandPath(new TreePath(dtm.getPathToRoot(destination)));
- ACanvas.getCanvas().repaintAllFromScratch();
- }
- }
-
- } // add() -------------------------------------------------------------
-
-
-
- /**
- * Adds the selected item to the mass list and outputs the invariant mass in the output window
- * Doesn't make the list visible as really only need to see output window
- * @param list
- */
- public void massCalc(AList list)
- {
- // default destination
- DefaultMutableTreeNode destination = mass;
- TreePath tp = getSelectionPath();
-
- if(destination != null && destination.getAllowsChildren())
- {
- // check if it's already in the list and if so, don't add
- boolean already = this.isAlreadyInTheList(list, destination);
- if(already)
- {
- logger.info(list + " is already in this list, not added");
- }
- else
- {
- dtm.insertNodeInto(new DefaultMutableTreeNode(list, false),
- destination, destination.getChildCount());
- expandPath(new TreePath(dtm.getPathToRoot(destination)));
- ACanvas.getCanvas().repaintAllFromScratch();
- }
- }
-
- if (tp != null)
- {
- setSelectionPath(tp);
- }
-
- // added to list, now do summarise
- Summarizer summ = new Summarizer();
- AOutput.alwaysAppend(summ.getHeader(), ALogInterface.NORMAL);
-
- AList[] children = getChildren(mass);
-
- int chiLength = children.length;
-
- for(int i = 0; i < chiLength; i++)
- {
- int num = children[i].getItems().length;
- A4Vector v = children[i].getSource().get4Vector(num,
- children[i].getItems(),0.14); //assume pion mass
-
-
- if(v != null && num > 0)
- {
- String info = summ.addAndGetInfo(v, children[i].toString());
- AOutput.alwaysAppend(info, ALogInterface.NORMAL);
- }
- }
-
- String msg = summ.getTotalInfo();
-
- AOutput.alwaysAppend(msg, ALogInterface.NORMAL_BOLD); // Print default summary (ie, assuming pi mass for all)
-
- summ = null;
-
- } // massCalc() -------------------------------------------------------------
-
- /**
- * Adds the selected item to the mass list and outputs the invariant mass in the output window
- * Doesn't make the list visible as really only need to see output window
- * This is the massCalc function for V0 decays. Check for up to 2 tracks and display 4 mass scenarios
- * @param list
- */
- public void massCalcV0(AList list)
- {
- // default destination
- DefaultMutableTreeNode destination = mass;
- TreePath tp = getSelectionPath();
-
- if(getChildren(mass).length == 0) // if list is empty, make sure counters are reinitialised
- {
- V0vx=0;
- V0tracks=0;
- V0charge=0;
- }
-
- if(destination != null && destination.getAllowsChildren())
- {
- // check if it's already in the list and if so, don't add
- boolean already = this.isAlreadyInTheList(list, destination);
-
- // check list for tracks and vertices (to a maximum of 2 tracks and 1 vertex)
- if(getChildren(mass).length < 3)
- {
- if(already)
- {
- logger.info(list + " is already in this list, not added");
- }
- else if(!(list.getSource() instanceof ARVxData || list.getSource() instanceof ATrackData))
- {
- logger.info("not selected a track or vertex");
- AOutput.alwaysAppend("\n\n Not selected a track or vertex\n\n",ALogInterface.PICK);
- return;
- }
- else if((list.getSource() instanceof ARVxData && V0vx>=1) || (list.getSource() instanceof ATrackData && V0tracks>=2))
- {
- logger.info("already a vertex or two tracks selected");
- AOutput.alwaysAppend("\n\n Already a vertex or two tracks selected\n",ALogInterface.PICK);
- return;
- }
- else
- {
-
- // check the charges of the two tracks are opposite
- //
- if((list.getSource() instanceof ATrackData))
- {
- ATrackData track = (ATrackData) list.getSource();
- AHelix h = track.getModifiableHelix(list.getItemsID()[0]);
- if((V0charge != 0) && (V0charge * AMath.getSign(h.pT()) > 0))
- {
- logger.info("2nd track is same charge as 1st track");
- AOutput.alwaysAppend("\n\nPlease pick an oppositely charged track\n", ALogInterface.PICK);
- return;
- }
- } //end check charge
-
- // now increment the counters
- // all tests passed, now can input into list.
-
- if(list.getSource() instanceof ATrackData)
- {
- V0tracks++;
- logger.info("Selected a Track");
- }
- else if(list.getSource() instanceof ARVxData)
- {
- V0vx++;
- logger.info("Selected a Vertex");
- }
-
- dtm.insertNodeInto(new DefaultMutableTreeNode(list, false),
- destination, destination.getChildCount());
- expandPath(new TreePath(dtm.getPathToRoot(destination)));
- ACanvas.getCanvas().repaintAllFromScratch();
- }
-
- }
- else
- {
- logger.info("list full (max 2 tracks + 1 vertex)");
- AOutput.alwaysAppend("\n\n List full (max 2 tracks + 1 vertex)\n",ALogInterface.PICK);
- return;
- }
- }
- if (tp != null)
- {
- setSelectionPath(tp);
- }
-
-
- // added to list, now do summarise
- Summarizer summK = new Summarizer(); // K -> pi pi
- Summarizer summL = new Summarizer(); // Lambda -> pi p
- Summarizer summAL = new Summarizer(); // AntiLambda -> pi pbar
- Summarizer summG = new Summarizer(); // gamma -> ee
-
- double[] secVx = new double[3]; // initialisation of secVx x,y,z array, if no vertex selected, use primary
- double[] priVx = new double[3]; // primary vertex container (used to calculate decay length)
- APar parameterStore = APar.instance();
- priVx[0]=parameterStore.get("Event", "XVtx").getD();
- priVx[1]=parameterStore.get("Event", "YVtx").getD();
- priVx[2]=parameterStore.get("Event", "ZVtx").getD();
-
- secVx=priVx;
-
- AList[] children = getChildren(mass);
-
-
- int chiLength = children.length;
-
- if(chiLength == 3)
- {
- boolean V0title = true;
- for(int i = 0; i < chiLength; i++)
- {
- AData source = children[i].getSource();
- //ordering of the list is important.
- //if vertex selected second, then the tracks selected before use primary vertex...
- //need to get secVx first, THEN calculate tracks...
- if(source instanceof ARVxData)
- {
- ARVxData rvx = (ARVxData) source;
- secVx = rvx.getVertex(children[i].getItemsID()[0]); // gets x,y,z of the picked vertex.
- }
- }
-
- for(int i = 0; i < chiLength; i++)
- {
-
- AData source = children[i].getSource();
-
- if(source instanceof ATrackData)
- {
- ATrackData track = (ATrackData) source;
-
- // get helix of picked track
- AHelix h = track.getModifiableHelix(children[i].getItemsID()[0]);
-
- // get charge for charge check
- V0charge = (int) (Math.abs(h.pT())/h.pT());
-
- int num = children[i].getItems().length;
-
- // initialise 4 vectors
- A4Vector vK = source.get4Vector(num,
- children[i].getItems(),0.0);
- A4Vector vL = source.get4Vector(num,
- children[i].getItems(),0.0);
- A4Vector vAL = source.get4Vector(num,
- children[i].getItems(),0.0);
- A4Vector vG = source.get4Vector(num,
- children[i].getItems(),0.0);
-
-
- // now calculate the 4 vector
- if(V0vx > 0)
- {
- double R = parameterStore.get("Event", "Curvature").getD() * Math.abs(h.pT());
-
- // +1/-1 for a clockwise/anti-clockwise helix
- double S = (int) (Math.abs(h.pT())/h.pT());
-
- // Coordinates of the center point for the helix
- double xC = (S * h.d0() - R) * Math.cos(Math.toRadians(h.phi0()) + S * Math.PI / 2.);
- double yC = (S * h.d0() - R) * Math.sin(Math.toRadians(h.phi0()) + S * Math.PI / 2.);
-
- // calculate new phi from centre of curvature and secondary vertex
- double phiPrime = Math.atan2(yC-secVx[1], xC-secVx[0]) + S*(Math.PI / 2.0);
-
- double px = Math.abs(h.pT()) * Math.cos(h.phi0());
- double py = Math.abs(h.pT()) * Math.sin(h.phi0());
- double pz = Math.abs(h.pT()) * Math.sinh(h.eta());
-
- // recalculate px/py at secondary vertex
- double pxPrime = Math.sqrt((px*px) + (py*py))*Math.cos(phiPrime);
- double pyPrime = Math.sqrt((px*px) + (py*py))*Math.sin(phiPrime);
-
- px = pxPrime;
- py = pyPrime;
-
- if(chiLength == 3 && !parameterStore.get("Minerva", "hideV0massoutput").getStatus())
- {
- logger.info("recalculating tracks");
- AOutput.alwaysAppend("\n\nRecalculated track values:\n", ALogInterface.PICK);
- AOutput.alwaysAppend(source.getNameScreenName()+" index: " + (children[i].getItemsID()[0]) + "\n"
- +"PT="+String.format("%.3f",h.pT()) +" GeV\n"
- +AMath.ETA+" = "+String.format("%.3f",h.eta())+"\n"
- +AMath.PHI+" = "+String.format("%.3f",Math.toDegrees(phiPrime))+AMath.DEGREES+"\n"
- +"Px=" + String.format("%.3f",px) +" GeV\n"
- +"Py=" + String.format("%.3f",py) +" GeV\n"
- +"Pz=" + String.format("%.3f",pz) +" GeV\n"
- +"Charge = " + V0charge//Math.abs(V0charge)
- ,ALogInterface.PICK);
- }
- else if(chiLength == 3)
- {
- if(V0title)
- {
- V0title = false;
-
- double decayLength = Math.sqrt(Math.pow(secVx[0]-priVx[0], 2.0)+Math.pow(secVx[1]-priVx[1], 2.0)+Math.pow(secVx[2]-priVx[2], 2.0));
-
- AOutput.alwaysAppend("\n Decay length for selected vertex: "+String.format("%.2f",decayLength)+" cm\n\n", ALogInterface.PICK);
-
-
- AOutput.alwaysAppend("\n Momentum for selected tracks: \n\n", ALogInterface.PICK);
- }
- if(V0charge>0)
- AOutput.alwaysAppend("+ve track (px,py,pz): ("+String.format("%.3f",px)+", "+String.format("%.3f",py)+", "+String.format("%.3f",pz)+")\n", ALogInterface.PICK);
- else if(V0charge <0)
- AOutput.alwaysAppend("-ve track (px,py,pz): ("+String.format("%.3f",px)+", "+String.format("%.3f",py)+", "+String.format("%.3f",pz)+")\n", ALogInterface.PICK);
-
- }
-
-
- /* now check charges of particles again and add to corresponding 4vectors
- *
- * scenarios:
- *
- * (K) Kaon -> pi+ pi-
- * (L) Lambda -> proton pi-
- * (AL)AntiLambda -> antiproton pi+
- * (G) Gamma -> e+ e-
- *
- *
- *
- */
-
- // negative charge
- if(V0charge < 0)
- {
- vK.set(px, py, pz, 0.1396);
- vL.set(px, py, pz, 0.1396);
- vAL.set(px, py, pz, 0.938);
- vG.set(px, py, pz, 0.000511);
- }
- // positive charge
- else if(V0charge > 0)
- {
- vK.set(px, py, pz, 0.1396);
- vL.set(px, py, pz, 0.938);
- vAL.set(px, py, pz, 0.1396);
- vG.set(px, py, pz, 0.000511);
- }
-
-
-
- // this is to display each track summary.
- // currently off as too much summary crowds the output
- if(vK != null && vL != null && vAL != null && vG != null && num > 0 && chiLength == 3)
- {
- String info = summK.addAndGetInfo(vK, children[i].toString());
- //AOutput.alwaysAppend(info, ALogPane.NORMAL);
- info = summL.addAndGetInfo(vL, children[i].toString());
- //AOutput.alwaysAppend(info, ALogPane.NORMAL);
- info = summAL.addAndGetInfo(vAL, children[i].toString());
- //AOutput.alwaysAppend(info, ALogPane.NORMAL);
- info = summG.addAndGetInfo(vG, children[i].toString());
- //AOutput.alwaysAppend(info, ALogPane.NORMAL);
- }
- }
-
- }
- }
-
- if(chiLength ==3 && !parameterStore.get("Minerva", "hideV0massoutput").getStatus())
- {
- // Config switch to display either mass or px,py,pz.
- String msgK = summK.getTotalInfo();
- String msgL = summL.getTotalInfo();
- String msgAL = summAL.getTotalInfo();
- String msgG = summG.getTotalInfo();
-
- AOutput.alwaysAppend("\n V0 Decay Scenarios", ALogInterface.NORMAL_BOLD);
-
- AOutput.alwaysAppend(summK.getHeader(), ALogInterface.NORMAL);
-
- // print out the resultant mass calculation for each scenario
- AOutput.alwaysAppend("K"+AMath.RARROW+AMath.PION+AMath.SUPPLUS+AMath.PION+AMath.SUPMINUS+"\n", ALogInterface.NORMAL);
- AOutput.alwaysAppend(msgK, ALogInterface.NORMAL_BOLD); // Print kaon summary
- AOutput.alwaysAppend("\n"+AMath.LAMBDACAP+AMath.RARROW+"p"+AMath.PION+AMath.SUPMINUS+"\n", ALogInterface.NORMAL);
- AOutput.alwaysAppend(msgL, ALogInterface.NORMAL_BOLD); // Print lambda summary
- AOutput.alwaysAppend("\n"+AMath.LAMBDACAP+AMath.OVERLINE+AMath.RARROW+"p"+AMath.OVERLINE+AMath.PION+AMath.SUPPLUS+"\n", ALogInterface.NORMAL);
- AOutput.alwaysAppend(msgAL, ALogInterface.NORMAL_BOLD); // Print antilambda summary
- AOutput.alwaysAppend("\n"+AMath.GAMMA+AMath.RARROW+"e"+AMath.SUPPLUS+"e"+AMath.SUPMINUS+"\n", ALogInterface.NORMAL);
- AOutput.alwaysAppend(msgG, ALogInterface.NORMAL_BOLD); // Print gamma summary
- AOutput.alwaysAppend("\n", ALogInterface.NORMAL);
- }
- }
- summK = null;
- summL = null;
- summAL = null;
- summG = null;
-
- } // massCalcV0() -------------------------------------------------------------
-
- /**
- * Takes two vectors from a list (added with the pick interaction and P key modifier)
- * and prints the delta R and delta Phi of the vectors
- * @param list
- */
- public void deltaR(AList list)
- {
- // default destination
- DefaultMutableTreeNode destination = mass;
- TreePath tp = getSelectionPath();
-
- if(destination != null && destination.getAllowsChildren())
- {
- // check if it's already in the list and if so, don't add
- boolean already = this.isAlreadyInTheList(list, destination);
-
- if(already)
- {
- logger.info(list + " is already in this list, not added");
- }
- else
- {
- if(getChildren(mass).length >= 2){
- logger.info(list + " is full, maximum of 2 objects for delta phi calculation " +
- "\n Clearing list");
- //AOutput.alwaysAppend("\n\n List full \n Clearing List \n",ALogPane.PICK);
- mass.removeAllChildren();
- }
- dtm.insertNodeInto(new DefaultMutableTreeNode(list, false),
- destination, destination.getChildCount());
- expandPath(new TreePath(dtm.getPathToRoot(destination)));
- ACanvas.getCanvas().repaintAllFromScratch();
- }
- }
-
- if (tp != null)
- {
- setSelectionPath(tp);
- }
-
- AList[] children = getChildren(mass);
-
- int chiLength = children.length;
- if(chiLength == 2){
- A4Vector v1 = children[0].getSource().get4Vector(children[0].getItems().length,
- children[0].getItems(),0.0);
- A4Vector v2 = children[1].getSource().get4Vector(children[1].getItems().length,
- children[1].getItems(),0.0);
-
- if(v1 != null && v2 != null)
- {
- double deltaPhi = Math.abs(v1.getPhi() - v2.getPhi()) > Math.PI ? (2*Math.PI) - Math.abs(v1.getPhi() - v2.getPhi()) : Math.abs(v1.getPhi() - v2.getPhi());
- double deltaEta = Math.abs(v1.getEta() - v2.getEta());
- double deltaR = Math.sqrt(deltaPhi*deltaPhi + deltaEta*deltaEta);
-
- String info = "\n\n"+AMath.DELTA+AMath.PHI+" = "+String.format("%.1f",Math.toDegrees(deltaPhi))+AMath.DEGREES+" ("+String.format("%.3f",deltaPhi)+")"
- + "\n"+AMath.DELTA+"R = "+String.format("%.3f",deltaR)+"\n";
- AOutput.alwaysAppend(info, ALogInterface.NORMAL_BOLD);
- }
-
- }
- }
-
- public void highlight(AList list)
- {
- highlight.removeAllChildren();
- dtm.insertNodeInto(new DefaultMutableTreeNode(list, false), highlight, 0);
- dtm.reload(highlight);
- expandPath(new TreePath(dtm.getPathToRoot(highlight)));
- ACanvas.getCanvas().repaintAllFromScratch();
-
- } // highlight() --------------------------------------------------------
-
-
-
- public void addLastDrawn(AList list)
- {
- dtm.insertNodeInto(new DefaultMutableTreeNode(list, false), lastDrawn, 0);
- dtm.reload(lastDrawn);
-
- } // addLastDrawn() -----------------------------------------------------
-
-
-
- public void addInvisible(AList list)
- {
- if(!dialog.isVisible())
- {
- dialog.setVisible(true);
- }
-
- // check if it's already in the list and if so, don't add
- boolean already = this.isAlreadyInTheList(list, invisible);
- if(already)
- {
- logger.info(list + " is already in the Invisible list, not added");
- }
- else
- {
- dtm.insertNodeInto(new DefaultMutableTreeNode(list, false),
- invisible, invisible.getChildCount());
- expandPath(new TreePath(dtm.getPathToRoot(invisible)));
- ACanvas.getCanvas().repaintAllFromScratch();
- }
-
- } // addInvisible() -----------------------------------------------------
-
-
- /**
- * When adding items to the list using rubberband they are grouped by type
- * and appear as "InDetTrack (5 items)". This method allows the user to expand
- * these items so they can manipulate individual items.
- * @param s Collection
- * @return Action
- */
- private Action expand(final Collection s)
- {
- // This is called when the user right-clicks, we first determine if this
- // item can be expanded or not.
- if (s.contains(root) || s.size() != 1)
- {
- return null;
- }
-
- DefaultMutableTreeNode node = (DefaultMutableTreeNode) s.iterator().next();
- if (node.getUserObject() instanceof AList)
- {
- AList a = (AList) node.getUserObject();
- if (a.getItems().length < 1)
- {
- return null;
- }
- }
- else
- {
- return null;
- }
-
- // It can be expanded, so we add a menu item to the popup with the callback
- // function as specified below.
- return new AbstractAction("Expand items")
- {
- public void actionPerformed(ActionEvent e)
- {
- // We checked these casts before adding the callback
- DefaultMutableTreeNode node = (DefaultMutableTreeNode) s.iterator().next();
- AList a = (AList) node.getUserObject();
- DefaultMutableTreeNode parent = (DefaultMutableTreeNode) node.getParent();
- int index = parent.getIndex(node);
-
- // Now go through the list and add the items one by one to the parent.
- for (int i=0; i<a.getItems().length; i++)
- {
- AList list = new AList(a.getSource(), a.getItems()[i]);
- dtm.insertNodeInto(new DefaultMutableTreeNode(list, false), parent, index);
- }
-
- // And remove the old list.
- dtm.removeNodeFromParent(node);
- }
- };
-
- } // expand() -----------------------------------------------------------
-
-
- private Action remove(final Collection s)
- {
- if(s.contains(root))
- {
- return null;
- }
-
- return new AbstractAction("Remove")
- {
- public void actionPerformed(ActionEvent e)
- {
- for (Iterator i = s.iterator(); i.hasNext();)
- {
- DefaultMutableTreeNode node = (DefaultMutableTreeNode) i.next();
- if (node.getUserObject() instanceof AList)
- {
- AList a = (AList) node.getUserObject();
- a.getSource().remove(a.getItems());
- }
- dtm.removeNodeFromParent(node);
- ACanvas.getCanvas().repaintAllFromScratch();
- }
- }
- };
-
- } // remove() -----------------------------------------------------------
-
-
-
- /**
- * This method is called after right-click -> summarize on the list-item in
- * the list dialog
- * @param s Collection
- * @return Action
- */
- private Action newSummarize(final Collection s)
- {
- if(s.contains(root) || s.size() != 1)
- {
- return null;
- }
-
- return new AbstractAction("Summarize")
- {
- public void actionPerformed(ActionEvent e)
- {
- Summarizer summ = new Summarizer();
- AOutput.alwaysAppend(summ.getHeader(), ALogInterface.NORMAL);
-
- for(Iterator j = s.iterator(); j.hasNext();)
- {
- DefaultMutableTreeNode node = (DefaultMutableTreeNode) j.next();
- AList[] children = getChildren(node);
-
- for(int i = 0; i < children.length; i++)
- {
- int num = children[i].getItems().length;
- AList child = children[i];
- AData source = child.getSource();
- A4Vector v = source.get4Vector(num, child.getItems());
-
- if(v != null && num > 0)
- {
- String info = summ.addAndGetInfo(v, children[i].toString());
- AOutput.alwaysAppend(info, ALogInterface.NORMAL);
- }
- }
- }
-
- String msg = summ.getTotalInfo();
- AOutput.alwaysAppend(msg, ALogInterface.NORMAL_BOLD);
-
- summ = null;
-
- } // actionPerformed()
- };
-
- } // newSummarize() -----------------------------------------------------
-
-
-
- /**
- * This summarize method is called from rubberbanding menu - Summarize
- * (from ASelection class)
- */
- public void summarize()
- {
- if(lastDrawn == null)
- {
- return;
- }
-
- Summarizer summ = new Summarizer();
-
- AList[] children = getChildren(lastDrawn);
-
- AOutput.alwaysAppend(summ.getHeader(), ALogInterface.NORMAL);
-
- for(int i = 0; i < children.length; i++)
- {
- int num = children[i].getItems().length;
- A4Vector v = children[i].getSource().get4Vector(num, children[i].getItems());
-
- if(v != null && num > 0)
- {
- String msg = summ.addAndGetInfo(v, children[i].toString());
- AOutput.alwaysAppend(msg, ALogInterface.NORMAL);
- }
- }
-
- String msg = summ.getTotalInfo();
- AOutput.alwaysAppend(msg, ALogInterface.NORMAL_BOLD);
-
- summ = null;
-
- } // summarize() --------------------------------------------------------
-
-
-
- private Action reset(final Collection s)
- {
- if(s.size() == 1 && s.contains(root))
- {
- return new AbstractAction("Reset")
- {
- public void actionPerformed(ActionEvent e)
- {
- reset();
- ACanvas.getCanvas().repaintAllFromScratch();
- }
- };
- }
- else
- {
- return null;
- }
-
- } // reset() ------------------------------------------------------------
-
-
-
- public void clearHighlight()
- {
- highlight.removeAllChildren();
- dtm.reload(highlight);
- ACanvas.getCanvas().repaintAllFromScratch();
-
- } // clearHighlight() ---------------------------------------------------
-
-
-
- public void clearHighlightAndMassCalculation()
- {
- highlight.removeAllChildren();
- dtm.reload(highlight);
- mass.removeAllChildren();
- dtm.reload(mass);
- ACanvas.getCanvas().repaintAllFromScratch();
-
- } // clearHighlightAndMassCalculation() ---------------------------------------------------
-
-
-
- public void clearLastDrawn()
- {
- lastDrawn.removeAllChildren();
- dtm.reload(lastDrawn);
-
- } // clearLastDrawn() ---------------------------------------------------
-
-
-
- /**
- * Check if list (list of IDs id) of datatimes (toMask datatype) is present
- * in the current event and if so, the items are added into the Invisible
- * list, thus masked and igrored.
- *
- * @param toMask AData
- * @param id int[]
- * @param index int[]
- */
- private boolean checkAndAddIntoInvisible(int[] id, int[] indexCheck, String key)
- {
- boolean result = false;
-
- // check if the datatype (key) exists in the new event
- AEvent e = eventManager.getCurrentEvent();
- AData toMask = e.get(key);
-
- if(toMask != null)
- {
- // iterate over all data items in this list
- for(int i = 0; i < id.length; i++)
- {
- // check if this ID is present in the current event
- int index = toMask.getIndexFromId(id[i]);
- if(index != -1)
- {
- // AList expects datatype and its index
- AList l = new AList(toMask, index);
- addInvisible(l);
- AOutput.alwaysAppend(" " + l.toString() + "\n", ALogInterface.NORMAL);
- result = true;
-
- // 2007-08-29: debugging check, remove after some time if the
- // problem is not observed (then indexCheck param is not needed)
- if(index != indexCheck[i])
- {
- logger.warn("AListManager: problem, indices not equal!");
- }
- // </debug>
- }
- }
- }
-
- return result;
-
- } // checkAndAddIntoInvisible() -----------------------------------------
-
-
-
- /**
- * restore Invisible list, cross-event invisible
- * @param backup AList[]
- */
- private void restoreInvisible(AList[] backup)
- {
- if(backup.length > 0)
- {
- AOutput.alwaysAppend("\nPrevious Invisible list not empty, masked items:\n",
- ALogInterface.WARNING);
-
- boolean somethingInvisible = false;
-
- for(int i = 0; i < backup.length; i++)
- {
- AData d = backup[i].getSource();
- String sg = d.getStoreGateKey();
- String accessKey = d.getName() + (sg != null ? sg : "");
-
- if(backup[i].getItems().length > 1)
- {
- somethingInvisible = checkAndAddIntoInvisible(backup[i].getItemsID(),
- backup[i].getItems(), accessKey);
- }
- else
- {
- int id = backup[i].getItemsID()[0];
- int index = backup[i].getItems()[0];
- somethingInvisible = checkAndAddIntoInvisible(new int[] { id },
- new int[] { index }, accessKey);
- }
-
- } // for (overall items in the Invisible list)
-
- if(!somethingInvisible)
- {
- AOutput.alwaysAppend(" none\n", ALogInterface.NORMAL);
- }
-
- } // if(backup.length > 0)
-
- } // restoreInvisible() -------------------------------------------------
-
-
-
- public void resetAndPreserveInvisible()
- {
- AList[] invisibleBackup = getChildren(invisible);
- reset();
- restoreInvisible(invisibleBackup);
-
- } // resetAndPreserveInvisible() ----------------------------------------
-
-
-
- public void reset()
- {
- root.removeAllChildren();
- highlight.removeAllChildren();
- lastDrawn.removeAllChildren();
- invisible.removeAllChildren();
- mass.removeAllChildren();
-
- root.add(highlight);
- root.add(lastDrawn);
- root.add(others);
- root.add(invisible);
- root.add(mass);
-
- numLists = 0;
- root.add(new DefaultMutableTreeNode("List " + numLists++));
-
- nodeColors.clear();
- nodeColors.put(highlight, new Integer(AColorMap.WH));
- nodeColors.put(invisible, new Integer(AColorMap.INVISIBLE));
- nodeColors.put(mass, new Integer(AColorMap.WH));
- dtm.reload();
-
- } // reset() ------------------------------------------------------------
-
-
-
- private Action rename(Collection s)
- {
- if(s.size() != 1)
- {
- return null;
- }
-
- final DefaultMutableTreeNode selected =
- (DefaultMutableTreeNode) (s.iterator().next());
-
- if(!selected.getAllowsChildren() || selected == root ||
- selected == others || selected == highlight ||
- selected == lastDrawn || selected == invisible ||
- selected == mass)
- {
- return null;
- }
-
- return new AbstractAction("Rename")
- {
- public void actionPerformed(ActionEvent h)
- {
- String name = JOptionPane.showInputDialog(listManager,
- "Enter new name");
- selected.setUserObject(name);
- }
- };
-
- } // rename() -----------------------------------------------------------
-
-
-
- private Action newParent(final Collection s)
- {
- if(s.contains(root))
- {
- return null;
- }
-
- Set parents = new HashSet();
-
- for(Iterator i = s.iterator(); i.hasNext();)
- {
- parents.add(((TreeNode) (i.next())).getParent());
- }
-
- if(parents.size() != 1)
- {
- return null;
- }
-
- final DefaultMutableTreeNode oldParent =
- (DefaultMutableTreeNode) (parents.iterator().next());
-
- return new AbstractAction("New Parent")
- {
- public void actionPerformed(ActionEvent e)
- {
- DefaultMutableTreeNode newParent =
- new DefaultMutableTreeNode("List " + numLists++);
- int index = 0;
- for(Iterator i = s.iterator(); i.hasNext();)
- {
- index = Math.min(oldParent.getIndex((TreeNode) (i.next())),
- index);
- }
-
- for(Iterator i = s.iterator(); i.hasNext();)
- {
- dtm.removeNodeFromParent((MutableTreeNode) (i.next()));
- }
-
- dtm.insertNodeInto(newParent, oldParent, index);
-
- for(Iterator i = s.iterator(); i.hasNext();)
- {
- dtm.insertNodeInto((MutableTreeNode) (i.next()), newParent, 0);
- }
-
- expandPath(new TreePath(dtm.getPathToRoot(newParent)));
- }
- };
-
- } // newParent() --------------------------------------------------------
-
-
-
- private Action newChild(final Collection s)
- {
- if(s.size() != 1)
- {
- return null;
- }
-
- final DefaultMutableTreeNode selected =
- (DefaultMutableTreeNode) (s.iterator().next());
-
- if(!selected.getAllowsChildren())
- {
- return null;
- }
-
- return new AbstractAction("New Child")
- {
- public void actionPerformed(ActionEvent h)
- {
- dtm.insertNodeInto(new DefaultMutableTreeNode("List " + numLists++),
- selected, 0);
- expandPath(new TreePath(dtm.getPathToRoot(selected)));
- }
- };
-
- } // newChild() ---------------------------------------------------------
-
-
-
- private DefaultMutableTreeNode getNode(Point m)
- {
- TreePath p = getPathForLocation(m.x, m.y);
- if(p != null)
- {
- TreeNode tn = (TreeNode) p.getLastPathComponent();
- if(tn instanceof DefaultMutableTreeNode)
- {
- return (DefaultMutableTreeNode) tn;
- }
- }
- return null;
-
- } // getNode() ----------------------------------------------------------
-
-
-
- private static class HashMapSet extends HashMap
- {
- public Object put(Object key, Object value)
- {
- // don't allow duplicates
- if(containsKey(key))
- {
- this.remove(key);
- }
-
- if(value != null)
- {
- return super.put(key, value);
- }
-
- else
- {
- return null;
- }
- }
- }
-
-
-
- class ColorRenderer extends DefaultTreeCellRenderer
- {
- AColorIcon folderIcon;
- AColorIcon leafIcon;
-
- public ColorRenderer()
- {
- folderIcon = new AColorIcon(AColorMap.WH, 15, 11);
- leafIcon = new AColorIcon(AColorMap.WH, 11, 11);
- }
-
- public Component getTreeCellRendererComponent(JTree tree, Object value, boolean sel, boolean expanded, boolean leaf, int row, boolean hasFocus)
- {
-
- super.getTreeCellRendererComponent(tree, value, sel, expanded, leaf, row, hasFocus);
-
- int c = getColor((TreeNode) value);
- if (c == AColorMap.NO_COLOR)
- setToolTipText("No Color");
- else if (c == AColorMap.INVISIBLE)
- setToolTipText("Invisible");
- else
- setToolTipText("");
-
- if (leaf)
- {
- leafIcon.setColorIndex(c);
- setIcon(leafIcon);
- }
- else
- {
- folderIcon.setColorIndex(c);
- setIcon(folderIcon);
- }
-
- return this;
- }
-
- }
-
- private int getColor(TreeNode node)
- {
- TreeNode[] parents = dtm.getPathToRoot(node);
- int color = AColorMap.NO_COLOR;
- for (int i = 0; i < parents.length; ++i)
- {
- Object o = nodeColors.get(parents[i]);
- if (o != null)
- color = ((Integer) o).intValue();
- }
- return color;
- }
-
- private DefaultMutableTreeNode[] getLeafs()
- {
- java.util.List list = new ArrayList();
- for (int i = 0; i < root.getChildCount(); ++i)
- {
- DefaultMutableTreeNode node = (DefaultMutableTreeNode) root.getChildAt(i);
- if (node != lastDrawn)
- {
- if (node.getAllowsChildren())
- {
- Enumeration descendents = node.breadthFirstEnumeration();
- while (descendents.hasMoreElements())
- {
- DefaultMutableTreeNode descendent = (DefaultMutableTreeNode) (descendents.nextElement());
- if (!descendent.getAllowsChildren())
- list.add(descendent);
- }
- }
- else
- {
- list.add(node);
- }
- }
- }
- return (DefaultMutableTreeNode[]) list.toArray(new DefaultMutableTreeNode[list.size()]);
- }
-
- public int[][] getColorMapping(AData data)
- {
- DefaultMutableTreeNode[] leafs = getLeafs();
- int num = 0;
- for (int i = 0; i < leafs.length; ++i)
- if (((AList) (leafs[i].getUserObject())).getSource() == data)
- num += ((AList) (leafs[i].getUserObject())).getItems().length;
-
- int[] index = new int[num];
- int[] color = new int[num];
- num = 0;
- for (int i = 0; i < leafs.length; ++i)
- {
- if (((AList) (leafs[i].getUserObject())).getSource() == data)
- {
- int[] items = ((AList) (leafs[i].getUserObject())).getItems();
- int c = getColor(leafs[i]);
- for (int j = 0; j < items.length; ++j)
- {
- index[num] = items[j];
- color[num] = c;
- num++;
- }
- }
- }
- int[][] temp = new int[2][];
- temp[0] = index;
- temp[1] = color;
- return temp;
- }
-
- public int getColorOfOthers()
- {
- return getColor(others);
- }
-
- public boolean[] getSelection(AData data)
- {
- boolean[] selected = new boolean[data.getNumData()];
-
- TreePath[] paths = getSelectionPaths();
- if (paths != null)
- {
- for (int i = 0; i < paths.length; ++i)
- {
- Enumeration nodes = ((DefaultMutableTreeNode) (paths[i].getLastPathComponent())).breadthFirstEnumeration();
- while (nodes.hasMoreElements())
- {
- DefaultMutableTreeNode node = (DefaultMutableTreeNode) (nodes.nextElement());
- if (!node.getAllowsChildren())
- {
- AList a = (AList) (node.getUserObject());
- if (a.getSource() == data)
- {
- int[] items = a.getItems();
- for (int j = 0; j < items.length; ++j)
- selected[items[j]] = true;
- }
- }
- }
- }
- }
- return selected;
- }
-
- public AList[] getChildren(DefaultMutableTreeNode node)
- {
- java.util.List children = new ArrayList();
-
- Object o = node.getUserObject();
- if (o instanceof AList)
- {
- children.add(o);
- }
- else
- {
- // process the child nodes recursively
- for (int i = 0; i < node.getChildCount(); ++i)
- {
- AList[] grandChildren = getChildren((DefaultMutableTreeNode) node.getChildAt(i));
- for (int j = 0; j < grandChildren.length; ++j)
- {
- children.add(grandChildren[j]);
- }
- }
- }
- return (AList[]) (children.toArray(new AList[children.size()]));
- }
-
- public static Collection uniqueExpansion(Collection s)
- {
- Collection c = new HashSet();
- for (Iterator i = s.iterator(); i.hasNext();)
- {
- Enumeration en = ((DefaultMutableTreeNode) (i.next())).depthFirstEnumeration();
- while (en.hasMoreElements())
- {
- c.add(en.nextElement());
- }
- }
- return c;
- }
-
- class ColorPanel extends JPanel
- {
- ColorPanel()
- {
- Color[] colorMap = AColorMap.getColors();
- ActionListener a = new ActionListener()
- {
- public void actionPerformed(ActionEvent e)
- {
- int colorIndex = ((AColorIcon) (((JButton) (e.getSource())).getIcon())).getColorIndex();
- TreePath[] sel = getSelectionPaths();
- if (sel != null)
- {
- for (int i = 0; i < sel.length; ++i)
- nodeColors.put(sel[i].getLastPathComponent(), new Integer(colorIndex));
- }
- listManager.repaint();
- ACanvas.getCanvas().repaintAllFromScratch();
- }
- };
- Box b = Box.createVerticalBox();
- for (int i = 0; i < colorMap.length; i++)
- {
- JButton l = new JButton(new AColorIcon(i, 13, 13));
- l.setMargin(new Insets(0, 0, 0, 0));
- l.setBorder(null);
- b.add(l);
- b.add(Box.createVerticalStrut(3));
- l.addActionListener(a);
- }
- b.add(Box.createVerticalStrut(6));
- JButton l = new JButton(new AColorIcon(AColorMap.NO_COLOR, 13, 13));
- l.setMargin(new Insets(0, 0, 0, 0));
- l.setBorder(null);
- l.setToolTipText("No specified color");
- b.add(l);
- b.add(Box.createVerticalStrut(3));
- l.addActionListener(a);
- l = new JButton(new AColorIcon(AColorMap.INVISIBLE, 13, 13));
- l.setMargin(new Insets(0, 0, 0, 0));
- l.setBorder(null);
- l.setToolTipText("Invisible");
- b.add(l);
- l.addActionListener(a);
- super.add(b);
- }
- }
-
-
-
- public ArrayList getLastDrawn()
- {
- ArrayList result = new ArrayList();
-
- Enumeration myenum = lastDrawn.children();
- while(myenum.hasMoreElements())
- {
- Object o = ((DefaultMutableTreeNode) (myenum.nextElement())).getUserObject();
- if(o instanceof AList)
- {
- if(((AList) o).getItems().length > 0)
- {
- result.add(o);
- }
- }
- }
-
- return result;
- }
-
-
-
- public void copyLastDrawn()
- {
-
- DefaultMutableTreeNode copy = new DefaultMutableTreeNode("List " + numLists++);
- Enumeration myenum = lastDrawn.children();
- while (myenum.hasMoreElements())
- {
- Object o = ((DefaultMutableTreeNode) (myenum.nextElement())).getUserObject();
- if (o instanceof AList)
- {
- if (((AList) o).getItems().length > 0)
- copy.add(new DefaultMutableTreeNode(o, false));
- }
- }
- dtm.insertNodeInto(copy, root, 0);
- setSelectionPath(new TreePath(dtm.getPathToRoot(copy)));
- // expandPath(getPathForLocation(e.getX(), e.getY()));
- }
-
- public void mouseExited(MouseEvent e)
- {
- update(e);
- } // DnD
-
- public void mouseClicked(MouseEvent e)
- {}
-
- public void mouseEntered(MouseEvent e)
- {
- update(e);
- } // DnD
-
-
- public void mousePressed(MouseEvent e)
- {
- // source of DnD
- source = getNode(e.getPoint());
- // set picked object to selection if possible
- TreePath tp = getPathForLocation(e.getPoint().x, e.getPoint().y);
- if (tp != null)
- {
-
- DefaultMutableTreeNode node = (DefaultMutableTreeNode) (tp.getLastPathComponent());
- if (!node.getAllowsChildren())
- {
- AList a = (AList) (node.getUserObject());
- if (a.getItems().length == 1)
- APickingGraphics2D.setPicked(a.getSource(), a.getItems()[0]);
- }
- }
- // special for right button
- if (!AUtilities.isRightMouseButton(e))
- return;
- // make right button act on selection just as left button does
- if (tp != null)
- {
- if (e.isControlDown())
- {
- addSelectionPath(tp);
- }
- else
- {
- setSelectionPath(tp);
- }
- }
- // pop up menu on right click
- TreePath[] sel = getSelectionPaths();
- Collection selection = new ArrayList(sel.length);
- for (int i = 0; i < sel.length; ++i)
- selection.add(sel[i].getLastPathComponent());
-
- JPopupMenu popup = new JPopupMenu();
- Action temp;
- temp = expand(selection);
- if (temp != null)
- popup.add(temp);
- temp = remove(selection);
- if (temp != null)
- popup.add(temp);
- temp = reset(selection);
- if (temp != null)
- popup.add(temp);
- temp = rename(selection);
- if (temp != null)
- popup.add(temp);
- temp = newParent(selection);
- if (temp != null)
- popup.add(temp);
- temp = newChild(selection);
- if (temp != null)
- popup.add(temp);
- temp = newSummarize(selection);
- if (temp != null)
- popup.add(temp);
- // gary just remove this for now
-
- AListProcessor[] listProcessors = eventManager.getCurrentEvent().getData();
-
- for (int i = 0; i < listProcessors.length; i++)
- {
- Action[] actions = listProcessors[i].getActions(selection);
- for (int j = 0; j < actions.length; ++j)
- {
- popup.add(actions[j]);
- }
- }
-
- popup.show(e.getComponent(), e.getX(), e.getY());
-
- }
-
- public void mouseMoved(MouseEvent e)
- {}
-
- public void mouseDragged(MouseEvent e)
- {
- // start of drag
- if (!draging)
- {
- if (source != null && isDragSource(source))
- draging = true;
- }
- update(e);
- }
-
- public void mouseReleased(MouseEvent e)
- {
- // DnD event
- if (draging && source != null)
- {
- DefaultMutableTreeNode destination = getNode(e.getPoint());
- if (destination != null && source != destination && destination.getAllowsChildren() && isValidDrag(source, destination))
- {
- if (!e.isControlDown() && source != lastDrawn)
- {
- dtm.removeNodeFromParent(source);
- }
- if (source == lastDrawn)
- {
- DefaultMutableTreeNode copy = new DefaultMutableTreeNode("List " + numLists++);
- Enumeration myenum = source.children();
- while (myenum.hasMoreElements())
- {
- Object o = ((DefaultMutableTreeNode) (myenum.nextElement())).getUserObject();
- copy.add(new DefaultMutableTreeNode(o, false));
- }
- dtm.insertNodeInto(copy, destination, 0);
- }
- else
- dtm.insertNodeInto(source, destination, 0);
- expandPath(getPathForLocation(e.getX(), e.getY()));
- ACanvas.getCanvas().repaintAllFromScratch();
- }
- }
- draging = false;
- source = null;
- setCursor(ACursorFactory.getInstance().getDefaultCursor());
- }
-
- private boolean isDragSource(DefaultMutableTreeNode source)
- {
- if (source == null || source == root || source == highlight || source == others || source==mass)
- return false;
- else
- return true;
- }
-
- private boolean isValidDrag(DefaultMutableTreeNode source, DefaultMutableTreeNode destination)
- {
- if (source == null || destination == null)
- return false;
- if (source == root || source == highlight || source == others || source == mass)
- return false;
- if (destination == others)
- return false;
- if (destination == lastDrawn)
- return false;
- if (destination == highlight)
- {
- if (source.getAllowsChildren())
- return false;
- if (((AList) (source.getUserObject())).getItems().length != 1)
- return false;
- if (highlight.getChildCount() != 0)
- return false;
- }
- return true;
- }
-
- private void update(MouseEvent e)
- {
- if (!draging)
- return;
- Point point = e.getPoint();
- DefaultMutableTreeNode current = getNode(point);
- if (current != null && current.getAllowsChildren() && isValidDrag(source, current))
- {
- TreePath p = getPathForLocation(point.x, point.y);
- setSelectionPath(p);
- if (e.isControlDown())
- {
- setCursor(DROP_VALID_COPY);
- }
- else
- {
- setCursor(ACursorFactory.getInstance().getDragValidCursor());
- }
- }
- else
- {
- setCursor(ACursorFactory.getInstance().getDragInvalidCursor());
- }
- }
-
-}
-
-
-class Summarizer
-{
- private A4Vector vector = null;
- private double etSum = 0;
-
-
- public Summarizer()
- {
- vector = new A4Vector();
-
- }
-
-
- public String getHeader()
- {
- StringBuffer sb = new StringBuffer();
- sb.append("\nSummary output:\n");
- sb.append(" "); // 18 spaces
- sb.append(" PT ");
- sb.append(" ET ");
- sb.append(" E ");
- sb.append(" M ");
- sb.append(" MT ");
- sb.append("\n");
-
- return sb.toString();
-
- }
-
-
- public String addAndGetInfo(A4Vector item, String description)
- {
- vector.add(item);
- etSum += item.getEt();
- StringBuffer sb = new StringBuffer();
- sb.append(description);
- sb.append("\n");
- sb.append(" "); // 18 spaces
- sb.append(String.format("%7.1f",item.getPt()));
- sb.append(String.format("%8.1f",item.getEt()));
- sb.append(String.format("%7.1f",item.getE()));
- sb.append(String.format("%8.3f",item.getMass()));
- sb.append(String.format("%8.1f",item.getMt()));
- sb.append("\n");
-
- return sb.toString();
- }
-
- public double getTotalEt()
- {
- return etSum;
- }
-
- public double getTotalPt()
- {
- return vector.getPt();
- }
-
- public double getTotalMt()
- {
- double et = getTotalEt();
- double pt = getTotalPt();
- return Math.sqrt(et*et - pt*pt);
- }
-
- public String getTotalInfo()
- {
- StringBuffer sb = new StringBuffer();
- sb.append(String.format("%-18s", "Total"));
- sb.append(String.format("%7.1f",getTotalPt()));
- sb.append(String.format("%8.1f",getTotalEt()));
- sb.append(String.format("%7.1f",vector.getE()));
- sb.append(String.format("%8.3f",vector.getMass()));
- sb.append(String.format("%8.1f",getTotalMt()));
- sb.append("\n");
-
- return sb.toString();
-
- }
-
-}
-
diff --git a/graphics/AtlantisJava/src/atlantis/list/AListProcessor.java b/graphics/AtlantisJava/src/atlantis/list/AListProcessor.java
deleted file mode 100755
index 6c58995a4a5..00000000000
--- a/graphics/AtlantisJava/src/atlantis/list/AListProcessor.java
+++ /dev/null
@@ -1,10 +0,0 @@
-package atlantis.list;
-
-
-import javax.swing.Action;
-import java.util.Collection;
-
-
-public interface AListProcessor {
- Action[] getActions(Collection nodes);
-}
diff --git a/graphics/AtlantisJava/src/atlantis/list/package.html b/graphics/AtlantisJava/src/atlantis/list/package.html
deleted file mode 100644
index ca84b937bc7..00000000000
--- a/graphics/AtlantisJava/src/atlantis/list/package.html
+++ /dev/null
@@ -1,6 +0,0 @@
-<html>
-<head></head>
-<body>
-<p>Implementation of lists which are used to store event datatypes.</p>
-</body>
-</html>
diff --git a/graphics/AtlantisJava/src/atlantis/nge/ANAnimInterpolate.java b/graphics/AtlantisJava/src/atlantis/nge/ANAnimInterpolate.java
deleted file mode 100644
index 90e0284bc68..00000000000
--- a/graphics/AtlantisJava/src/atlantis/nge/ANAnimInterpolate.java
+++ /dev/null
@@ -1,47 +0,0 @@
-package atlantis.nge;
-
-/**
- *
- * @author Adam Davison
- */
-public class ANAnimInterpolate extends ANAnimSegment {
-
- private ANAnimVar m_var;
- private double m_t1;
- private double m_t2;
- private double m_v1;
- private double m_v2;
- private int m_interp;
-
- public ANAnimInterpolate(ANAnimVar var, double t1, double t2,
- double v1, double v2, int interp) {
- m_var = var;
- m_t1 = t1;
- m_t2 = t2;
- m_v1 = v1;
- m_v2 = v2;
- m_interp = interp;
- }
-
- public void evaluate(double now) {
- if (now < m_t1) { return; }
- switch(m_interp) {
- case (ANAnimationManager.INTERP_LINEAR):
- //System.out.println("now: " + now + " m_t1: " + m_t1 + " m_t2: " + m_t2);
- double t = (now - m_t1) / (m_t2 - m_t1);
- //System.out.println("t: " + t);
- m_var.setValue((t * (m_v2 - m_v1)) + m_v1);
- break;
- }
- }
-
- @Override
- public double getStart() {
- return m_t1;
- }
-
- @Override
- public double getEnd() {
- return m_t2;
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/nge/ANAnimSegment.java b/graphics/AtlantisJava/src/atlantis/nge/ANAnimSegment.java
deleted file mode 100644
index 6678cade19f..00000000000
--- a/graphics/AtlantisJava/src/atlantis/nge/ANAnimSegment.java
+++ /dev/null
@@ -1,13 +0,0 @@
-package atlantis.nge;
-
-/**
- *
- * @author Adam Davison
- */
-public abstract class ANAnimSegment {
-
- public abstract double getStart();
- public abstract double getEnd();
-
- public abstract void evaluate(double now);
-}
diff --git a/graphics/AtlantisJava/src/atlantis/nge/ANAnimSetProjection.java b/graphics/AtlantisJava/src/atlantis/nge/ANAnimSetProjection.java
deleted file mode 100644
index 6ca352555ac..00000000000
--- a/graphics/AtlantisJava/src/atlantis/nge/ANAnimSetProjection.java
+++ /dev/null
@@ -1,38 +0,0 @@
-package atlantis.nge;
-
-/**
- *
- * @author Adam Davison
- */
-public class ANAnimSetProjection extends ANAnimSegment {
- private ANFrameManager m_fm;
- private ANProjection m_p;
- private double m_when;
-
- public ANAnimSetProjection(ANFrameManager fm, ANProjection p, double when) {
- m_fm = fm;
- m_p = p;
- m_when = when;
- }
-
- @Override
- public void evaluate(double now) {
- //System.out.println("Evaluate in SetProjection: " + now);
- if (now > m_when) {
- //System.out.println("CHANGE!");
- m_fm.setCurrentProjection(m_p);
- }
- }
-
- @Override
- public double getStart() {
- return m_when;
- }
-
- @Override
- public double getEnd() {
- return m_when;
- }
-
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/nge/ANAnimThread.java b/graphics/AtlantisJava/src/atlantis/nge/ANAnimThread.java
deleted file mode 100644
index 97185bb17cd..00000000000
--- a/graphics/AtlantisJava/src/atlantis/nge/ANAnimThread.java
+++ /dev/null
@@ -1,67 +0,0 @@
-package atlantis.nge;
-
-import atlantis.canvas.AWindow;
-import atlantis.utils.ALogger;
-import java.util.logging.Level;
-import java.util.logging.Logger;
-
-/**
- *
- * @author Adam Davison
- */
-public class ANAnimThread implements Runnable {
-
- private static ALogger logger = ALogger.getLogger(ANAnimThread.class);
- private ANAnimationManager m_am;
- private Object m_wait = new Object();
- private AWindow m_w;
-
- public ANAnimThread(ANAnimationManager am, AWindow w) {
- m_am = am;
- m_w = w;
- }
-
- public void reschedule() {
- //System.out.println("Rescheduling");
- synchronized (m_wait) {
- m_wait.notifyAll();
- }
- //System.out.println("Rescheduled");
- }
-
- public void run() {
- while (true) {
- double wait = m_am.timeToWait();
-
- //System.out.println("Told to wait: " + wait);
-
- double mintime = 1.0 / 100.0;
-
- if (wait == -1.0) {
- // wait forever
- synchronized (m_wait) {
- try {
- m_wait.wait();
- } catch (InterruptedException ex) {
- logger.error("Interrupted in sleep", ex);
- }
- }
- } else if (wait > mintime) {
- // wait until we're supposed to do something
- synchronized (m_wait) {
- try {
- m_wait.wait((long) (wait * 1000));
- } catch (InterruptedException ex) {
- logger.error("Interrupted in sleep", ex);
- }
- }
- } else {
- // do something now
- //System.out.println("Forcing Repaint!");
- m_w.invalidateQuietly();
- //m_w.getView().paintImmediately(0, 0, m_w.getWidth(), m_w.getHeight());
- m_w.repaint();
- }
- }
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/nge/ANAnimVar.java b/graphics/AtlantisJava/src/atlantis/nge/ANAnimVar.java
deleted file mode 100644
index 2dd5c9c9b38..00000000000
--- a/graphics/AtlantisJava/src/atlantis/nge/ANAnimVar.java
+++ /dev/null
@@ -1,27 +0,0 @@
-package atlantis.nge;
-
-/**
- * A variable which is animatable, pretty much a wrapper around a double...
- *
- * @author Adam Davison
- */
-public class ANAnimVar {
-
- private double m_val;
-
- public ANAnimVar(double val) {
- m_val = val;
- }
-
- public ANAnimVar() {
- m_val = 0.0;
- }
-
- public double getValue() {
- return m_val;
- }
-
- public void setValue(double val) {
- m_val = val;
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/nge/ANAnimationManager.java b/graphics/AtlantisJava/src/atlantis/nge/ANAnimationManager.java
deleted file mode 100644
index a4d7e3fe0c8..00000000000
--- a/graphics/AtlantisJava/src/atlantis/nge/ANAnimationManager.java
+++ /dev/null
@@ -1,92 +0,0 @@
-package atlantis.nge;
-
-import atlantis.canvas.AWindow;
-import java.util.ArrayList;
-import java.util.Iterator;
-
-/**
- *
- * @author Adam Davison
- */
-public class ANAnimationManager {
-
- public static final int INTERP_LINEAR = 1;
- private ArrayList<ANAnimSegment> m_segs;
- private double m_now;
-
- private ANAnimThread m_at;
-
- public ANAnimationManager(AWindow w) {
- m_segs = new ArrayList<ANAnimSegment>();
- updateNow();
- m_at = new ANAnimThread(this, w);
- new Thread(m_at).start();
- }
-
- public void updateNow() {
- m_now = ((double) System.currentTimeMillis()) / 1000.0;
- }
-
- public void scheduleAnimationAbsolute(ANAnimVar v, double t1, double t2, double v1, double v2) {
- m_segs.add(new ANAnimInterpolate(v, t1, t2, v1, v2, INTERP_LINEAR));
- m_at.reschedule();
- }
-
- public void scheduleAnimation(ANAnimVar v, double t1, double t2, double v1, double v2) {
- updateNow();
- scheduleAnimationAbsolute(v, t1 + m_now, t2 + m_now, v1, v2);
- }
-
- public void scheduleProjectionChange(ANFrameManager fm, ANProjection p, double t) {
- updateNow();
- m_segs.add(new ANAnimSetProjection(fm, p, t + m_now));
- m_at.reschedule();
- }
-
- public void animate() {
- updateNow();
-
- //System.out.println("Animating at: " + m_now);
-
- Iterator<ANAnimSegment> it = m_segs.listIterator();
- while (it.hasNext()) {
- ANAnimSegment seg = it.next();
- //System.out.println("Seg: " + seg + " start: " + seg.getStart() + " end: " + seg.getEnd());
- if (seg.getStart() < m_now) {
- seg.evaluate(m_now);
- }
- if (seg.getEnd() < m_now) {
- it.remove();
- }
- }
- }
-
- public double timeToWait() {
- double next = -1.0;
- updateNow();
-
- //System.out.println("Wait testing at: " + m_now);
-
- Iterator<ANAnimSegment> it = m_segs.listIterator();
- while (it.hasNext()) {
- ANAnimSegment seg = it.next();
- //System.out.println("Seg: " + seg + " start: " + seg.getStart() + " end: " + seg.getEnd());
- if (seg.getStart() <= next && seg.getEnd() >= next) {
- //System.out.println("In segment, returning 0.0");
- return 0.0;
- } else if (seg.getStart() >= next) {
- double wait = seg.getStart() - m_now;
- if (wait < next || next == -1.0) {
- if (wait < 0.0) {
- wait = 0.0;
- }
- next = wait;
- }
- }
- }
-
- return next;
- }
-}
-
-
diff --git a/graphics/AtlantisJava/src/atlantis/nge/ANCacheToken.java b/graphics/AtlantisJava/src/atlantis/nge/ANCacheToken.java
deleted file mode 100644
index 3ec2fe065ac..00000000000
--- a/graphics/AtlantisJava/src/atlantis/nge/ANCacheToken.java
+++ /dev/null
@@ -1,11 +0,0 @@
-package atlantis.nge;
-
-/**
- *
- * @author Adam Davison
- */
-public class ANCacheToken<T> {
-
-
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/nge/ANColor.java b/graphics/AtlantisJava/src/atlantis/nge/ANColor.java
deleted file mode 100644
index 87c01543c86..00000000000
--- a/graphics/AtlantisJava/src/atlantis/nge/ANColor.java
+++ /dev/null
@@ -1,87 +0,0 @@
-package atlantis.nge;
-
-import atlantis.graphics.colormap.AColorMap;
-
-import java.awt.Color;
-
-/**
- * A floating point colour class that enforces very little
- *
- * @author Adam Davison, Mark Stockton
- */
-public class ANColor {
-
- public float r;
- public float g;
- public float b;
- public float a;
-
- public ANColor(Color c) {
- r = ((float) c.getRed()) / 255.0f;
- g = ((float) c.getGreen()) / 255.0f;
- b = ((float) c.getBlue()) / 255.0f;
- a = ((float) c.getAlpha()) / 255.0f;
- }
-
- public ANColor(float _r, float _g, float _b, float _a) {
- r = _r;
- g = _g;
- b = _b;
- a = _a;
- }
-
- public ANColor(float _r, float _g, float _b) {
- r = _r;
- g = _g;
- b = _b;
- a = 1.0f;
- }
-
- public static ANColor getBGColor() {
- return getMapColor(AColorMap.BG);
- }
-
- public static ANColor getMapColor(int index) {
- Color bg = AColorMap.getColors()[index];
-
- float r = ((float) bg.getRed()) / 255.0f;
- float g = ((float) bg.getGreen()) / 255.0f;
- float b = ((float) bg.getBlue()) / 255.0f;
-
- return new ANColor(r, g, b);
- }
-
- public static ANColor getMapColor(int index, float trans) {
- Color bg = AColorMap.getColors()[index];
-
- float r = ((float) bg.getRed()) / 255.0f;
- float g = ((float) bg.getGreen()) / 255.0f;
- float b = ((float) bg.getBlue()) / 255.0f;
-
- return new ANColor(r, g, b, trans);
- }
-
- public void mult(float c) {
- r *= c;
- g *= c;
- b *= c;
- if (r < 0.0f) { r = 0.0f; }
- if (r > 1.0f) { r = 1.0f; }
- if (g < 0.0f) { g = 0.0f; }
- if (g > 1.0f) { g = 1.0f; }
- if (b < 0.0f) { b = 0.0f; }
- if (b > 1.0f) { b = 1.0f; }
- }
-
- public void lighten(float c) {
- r = 1.0f - ((1.0f - r)*c);
- g = 1.0f - ((1.0f - g)*c);
- b = 1.0f - ((1.0f - b)*c);
- if (r < 0.0f) { r = 0.0f; }
- if (r > 1.0f) { r = 1.0f; }
- if (g < 0.0f) { g = 0.0f; }
- if (g > 1.0f) { g = 1.0f; }
- if (b < 0.0f) { b = 0.0f; }
- if (b > 1.0f) { b = 1.0f; }
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/nge/ANFrameManager.java b/graphics/AtlantisJava/src/atlantis/nge/ANFrameManager.java
deleted file mode 100644
index adb6cb778c0..00000000000
--- a/graphics/AtlantisJava/src/atlantis/nge/ANFrameManager.java
+++ /dev/null
@@ -1,190 +0,0 @@
-package atlantis.nge;
-
-import atlantis.canvas.AWindow;
-import java.nio.ByteBuffer;
-import java.nio.ByteOrder;
-import java.nio.IntBuffer;
-import javax.media.opengl.DebugGL;
-import javax.media.opengl.GL;
-import javax.media.opengl.GLAutoDrawable;
-import javax.media.opengl.glu.GLU;
-
-/**
- * Decides which projection should be onscreen and in what state.
- * Handles animation, performance and probably all sorts of other things.
- *
- * @author Adam Davison, Mark Stockton
- */
-public class ANFrameManager {
-
- // Targ is what we're aiming to display but proj is what we're really
- // displaying, could be the same but could also be some transition into
- // targ
-
- private ANProjection m_targ;
- private ANProjection m_proj;
-
- private ANAnimationManager m_am;
-
- public ANFrameManager(AWindow w) {
- // Default, if not told anything else construct 3d projection
- m_proj = null;
- m_am = new ANAnimationManager(w);
-
- }
-
- public ANPickResult pick(GLAutoDrawable drawable, int w, int h, int x, int y) {
-
- if (m_proj == null) { return null; }
-
- long before = System.nanoTime();
-
- GL gl = drawable.getGL();
- gl.glViewport(0, 0, w, h);
-
- GLU glu = new GLU();
- int maxsize = 100000;
-
- ByteBuffer bb = ByteBuffer.allocateDirect(4*maxsize);
- bb.order(ByteOrder.nativeOrder());
- // FIXME: Reuse this object for performance
- IntBuffer ib = bb.asIntBuffer();
- gl.glSelectBuffer(maxsize, ib);
- gl.glRenderMode(GL.GL_SELECT);
- gl.glMatrixMode(GL.GL_PROJECTION);
- int[] viewport = new int[4];
- gl.glLoadIdentity();
- gl.glGetIntegerv(GL.GL_VIEWPORT, viewport, 0);
- y = h - y;
- glu.gluPickMatrix(x - 1, y - 1, 3, 3, viewport, 0);
-
- ANRenderHints rh = new ANRenderHints();
- rh.setPick(true);
- rh.setPickHelper(new ANPickHelper(gl));
-
- //gl.glPushName(0);
- m_proj.display(drawable, w, h, rh);
- //gl.glPopName();
-
- int hits = gl.glRenderMode(GL.GL_RENDER);
-
- System.out.println("HITS: " + hits);
- ANSelectionList sl = new ANSelectionList(ib);
- //System.out.println("FRONT: " + sl.getFrontID());
- int[] front = sl.getFrontID();
-
- ANPickResult ret = null;
-
- if (front != null) {
- int id = front[0];
- System.out.println(id);
- int data = front[1];
- System.out.println(data);
- ANPickHandler ph = rh.getPickHelper().getPickHandler(id);
- System.out.println(ph);
- if (ph != null) {
- ret = ph.getHitInfo(data);
- }
- }
-
- long after = System.nanoTime();
- System.out.println("Pick took: " + (after - before) / 1000);
-
- System.out.println(ret);
- return ret;
- }
-
- public void display(GLAutoDrawable drawable, int w, int h) {
- System.out.println("Asked to display!");
-
- if (m_proj == null) { return; }
-
- long before = System.nanoTime();
-
- GL gl = new DebugGL(drawable.getGL());
- gl.glViewport(0, 0, w, h);
-
- m_am.animate();
-
- m_proj.display(drawable, w, h, new ANRenderHints());
-
- long after = System.nanoTime();
- System.out.println("Frame took: " + (after - before) / 1000);
- }
-
- public double timeToWait() {
- return m_am.timeToWait();
- }
-
- public ANProjection getTargetProjection() {
- return m_targ;
- }
-
- public ANProjection getCurrentProjection() {
- return m_proj;
- }
-
- public void setCurrentProjection(ANProjection proj) {
- m_proj = proj;
- }
-
- public void scheduleTransition(ANProjection p) {
- //(new Exception()).printStackTrace();
-
- m_targ = p;
-
- if (m_proj == null || m_proj == p) { m_proj = p; return; }
-
- //System.out.println(m_proj);
- //System.out.println(p);
-
- if (m_proj instanceof ANLinearProjection &&
- p instanceof ANLinearProjection) {
-
- //System.out.println("HERE!");
-
- ANLinearTransition trans = new ANLinearTransition(
- (ANLinearProjection) m_proj,
- (ANLinearProjection) p);
-
- setCurrentProjection(trans);
-
- double length = 1.0;
-
- m_am.scheduleAnimation(trans.getTransformTimeVar(), 0.0, length, 0.0, 1.0);
- m_am.scheduleAnimation(trans.getFadeTimeVar(), 0.0, length, 0.0, 1.0);
- m_am.scheduleProjectionChange(this, p, length);
-
- } else {
- m_proj = p;
- }
- }
-
- public void checkProjectionYX() {
- //System.out.println("checkProjectionYX: m_proj: " + m_proj);
- if (!(m_targ instanceof ANProjectionYX)) {
- //System.out.println("RECREATING");
- scheduleTransition(new ANProjectionYX());
- }
- }
-
- public void checkProjection3D() {
- if (!(m_targ instanceof ANProjection3D)) {
- scheduleTransition(new ANProjection3D());
- }
- }
-
- public ANProjectionPhysics checkProjectionPhysics() {
- if (!(m_targ instanceof ANProjectionPhysics)) {
- ANProjectionPhysics pp = new ANProjectionPhysics();
- scheduleTransition(pp);
- return pp;
- } else {
- return (ANProjectionPhysics)(m_targ);
- }
- }
-
- public ANAnimationManager getAnimationManager() {
- return m_am;
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/nge/ANGlobalFlags.java b/graphics/AtlantisJava/src/atlantis/nge/ANGlobalFlags.java
deleted file mode 100644
index 5a96788eafa..00000000000
--- a/graphics/AtlantisJava/src/atlantis/nge/ANGlobalFlags.java
+++ /dev/null
@@ -1,17 +0,0 @@
-package atlantis.nge;
-
-/**
- * This class contains some static final boolean flags that can be used to
- * control behaviour such as debugging and sanity checking.
- *
- * The java compiler guarantees that code enclosed in an if(var) where var
- * is a final and false boolean is entirely excluded from your class file
- *
- * This is better than just using logger.debug() here because we don't want
- * to do the debug level testing inside the fast rendering path
- *
- * @author Adam Davison
- */
-public class ANGlobalFlags {
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/nge/ANLinearProjection.java b/graphics/AtlantisJava/src/atlantis/nge/ANLinearProjection.java
deleted file mode 100644
index c3cda8cb627..00000000000
--- a/graphics/AtlantisJava/src/atlantis/nge/ANLinearProjection.java
+++ /dev/null
@@ -1,229 +0,0 @@
-package atlantis.nge;
-
-import atlantis.nge.object.data.ANObjectDataJet;
-import atlantis.nge.object.geometry.ANObjectGeomMuon;
-import atlantis.nge.object.geometry.ANObjectGeomCalo;
-import atlantis.nge.object.data.ANObjectDataCell;
-import atlantis.data.ACalorimeterData;
-import atlantis.event.AEvent;
-import atlantis.event.AEventManager;
-import atlantis.data.AJetData;
-import atlantis.data.ALArData;
-import atlantis.geometry.AAtlasDetector;
-import atlantis.geometry.ABarrelCalorimeterDetector;
-import atlantis.geometry.ABoxDetector;
-import atlantis.geometry.ACalorimeterDetector;
-import atlantis.geometry.ADetector;
-import atlantis.geometry.ADetectors;
-import atlantis.geometry.AEndcapCalorimeterDetector;
-import atlantis.geometry.AEndcapCryostatDetector;
-import atlantis.utils.AMath;
-
-import java.util.ArrayList;
-
-import javax.media.opengl.GL;
-import javax.media.opengl.GLAutoDrawable;
-
-/**
- * This class represents projections which are a linear transformation on
- * 3d space. These are easy to handle for a variety of reasons
- *
- * @author Adam Davison, Mark Stockton
- */
-public abstract class ANLinearProjection extends ANProjection {
-
- // DEPRECATED
- public ANObjectGeomMuon m_ogm;//muon
- public ANObjectGeomCalo m_ogc;//calo barrel
- public ANObjectGeomCalo m_ogetp;//extended tile +z
- public ANObjectGeomCalo m_ogtsp;//mbts +z
- public ANObjectGeomCalo m_ogecp;//endcap +z
- public ANObjectGeomCalo m_ogetm;//extended tile -z
- public ANObjectGeomCalo m_ogtsm;//mbts -z
- public ANObjectGeomCalo m_ogecm;//endcap -z
-
- public ANObjectDataJet m_jet;//jets
- public ANObjectDataCell m_lar;//lar cells
-
- private static AEventManager eventManager = AEventManager.instance();
-
- /**
- * The contract of applyLinearTransform is that you can assume
- * the matrix stack is in an identity state and you should always apply
- * the transformation in a relative manner, ie glTransform, glRotate
- * nothing like glLoadMatrix or glLoadIdentity
- *
- * @param drawable
- */
- public abstract void applyLinearTransform(GLAutoDrawable drawable, int w, int h);
-
- public abstract void drawScene(GLAutoDrawable drawable, ANRenderHints hint);
-
- // TODO: A lot of this function should probably be broken up into more
- // subclasses to allow this functionality to be selected more
- // granularly
- @Override
- public final void display(GLAutoDrawable drawable, int w, int h, ANRenderHints hint) {
- GL gl = drawable.getGL();
- gl.glMatrixMode(GL.GL_MODELVIEW);
- gl.glLoadIdentity();
-
- gl.glMatrixMode(GL.GL_PROJECTION);
-
- // This is a bit of a hack maybe...
- if (!hint.getPick()) {
- gl.glLoadIdentity();
- }
-
- gl.glEnable(gl.GL_BLEND);
- gl.glBlendFunc(gl.GL_SRC_ALPHA, gl.GL_ONE_MINUS_SRC_ALPHA);
- gl.glEnable(GL.GL_DEPTH_TEST);
-
- gl.glPolygonOffset(2.0f, 1.0f);
- gl.glEnable(GL.GL_POLYGON_OFFSET_FILL);
-
- applyLinearTransform(drawable, w, h);
-
- ANColor bg = ANColor.getBGColor();
-
- gl.glClearColor(bg.r, bg.g, bg.b, 1.0f);
- gl.glClear(gl.GL_COLOR_BUFFER_BIT | gl.GL_DEPTH_BUFFER_BIT);
-
- drawScene(drawable, hint);
- } // Some function that calls applyLinearTransform and extracts the matrix
- // is needed for the transitions but that can come later...
-
-
- // DEPRECATED - to be replaced shortly by ANObjectGenerator
- public final void createGeometry(){
- ArrayList<ABoxDetector> m_boxes = new ArrayList<ABoxDetector>();
- ArrayList<ACalorimeterDetector> m_calo = new ArrayList<ACalorimeterDetector>();
- ArrayList<ACalorimeterDetector> m_extt = new ArrayList<ACalorimeterDetector>();
- ArrayList<ACalorimeterDetector> m_mbts = new ArrayList<ACalorimeterDetector>();
- ArrayList<ACalorimeterDetector> m_endc = new ArrayList<ACalorimeterDetector>();
-
- ADetectors[] ds = AAtlasDetector.getDetector().getDetectors();
- for (int i = 0; i < ds.length; i++) {
- ADetector[] d = ds[i].getDetectors();
- for (int j = 0; j < d.length; j++) {
- if (d[j] instanceof ABoxDetector) {
- ABoxDetector bd = (ABoxDetector) d[j];
- //TODO temporary code to show cut away detector
- //if((bd.getPhi()>1.2 && bd.getPhi()<5.1) || !ACanvas.getCanvas().getPaintingWindow().getProjection().getName().equals("N3D"))
- m_boxes.add(bd);
- }else if (d[j] instanceof ABarrelCalorimeterDetector) {
- ACalorimeterDetector cd = (ACalorimeterDetector) d[j];
- //extended tile only has one end in geom file and not relicated like others
- if(d[j].getName().equals("Extended TILE")){
- m_extt.add(cd);
- }else{
- m_calo.add(cd);
- }
-
- } else if (d[j] instanceof AEndcapCryostatDetector) {
- //adds MBTS but only has one end in geom file
- AEndcapCryostatDetector ecd = (AEndcapCryostatDetector) d[j];
- m_mbts.add(ecd);
- } else if (d[j] instanceof AEndcapCalorimeterDetector) {
- //adds LAr endcap + HEC but only has one end in geom file
- AEndcapCalorimeterDetector ecd = (AEndcapCalorimeterDetector) d[j];
- m_endc.add(ecd);
-
- }
-
- }
- }
-
- m_ogm = new ANObjectGeomMuon(m_boxes);
- m_ogc = new ANObjectGeomCalo(m_calo, 4, false);
- m_ogetp = new ANObjectGeomCalo(m_extt, 4, false);
- m_ogtsp = new ANObjectGeomCalo(m_mbts, 1, false);
- m_ogecp = new ANObjectGeomCalo(m_endc, 1, false);
- m_ogetm = new ANObjectGeomCalo(m_extt, 4, true);
- m_ogtsm = new ANObjectGeomCalo(m_mbts, 1, true);
- m_ogecm = new ANObjectGeomCalo(m_endc, 1, true);
-
-
- }
-
- // DEPRECATED - to be replaced shortly by ANObjectGenerator
- public final void createData(){
-
- AEvent ev = eventManager.getCurrentEvent();
- AJetData ajd = ev.getJetData();
- ajd.makeDrawList();
- m_jet = new ANObjectDataJet(ajd);
-
- ALArData ald = ev.getLArData();
- ald.makeDrawList();
- m_lar = new ANObjectDataCell(ald);
-
- }
-
- // DEPRECATED - to be replaced shortly by ANObjectGenerator
- public final void createGeometry(float phi, float eta, float dr){
- ArrayList<ABoxDetector> m_boxes = new ArrayList<ABoxDetector>();
- ArrayList<ACalorimeterDetector> m_calo = new ArrayList<ACalorimeterDetector>();
- ArrayList<ACalorimeterDetector> m_extt = new ArrayList<ACalorimeterDetector>();
- ArrayList<ACalorimeterDetector> m_mbts = new ArrayList<ACalorimeterDetector>();
- ArrayList<ACalorimeterDetector> m_endc = new ArrayList<ACalorimeterDetector>();
-
-
- ADetectors[] ds = AAtlasDetector.getDetector().getDetectors();
- for (int i = 0; i < ds.length; i++) {
- ADetector[] d = ds[i].getDetectors();
- for (int j = 0; j < d.length; j++) {
- if (d[j] instanceof ABoxDetector) {
- ABoxDetector bd = (ABoxDetector) d[j];
- //code to show cut away detector
- float etabd = (float) AMath.etaAbs(bd.getZMin(), bd.getRMin());
- if(AMath.deltaR(phi,eta,(float)bd.getPhi(),etabd)<dr)
- m_boxes.add(bd);
- }else if (d[j] instanceof ABarrelCalorimeterDetector) {
- ACalorimeterDetector cd = (ACalorimeterDetector) d[j];
- //extended tile only has one end in geom file and not relicated like others
- if(d[j].getName().equals("Extended TILE")){
- m_extt.add(cd);
- }else{
- m_calo.add(cd);
- }
-
- } else if (d[j] instanceof AEndcapCryostatDetector) {
- //adds MBTS but only has one end in geom file
- AEndcapCryostatDetector ecd = (AEndcapCryostatDetector) d[j];
- m_mbts.add(ecd);
- } else if (d[j] instanceof AEndcapCalorimeterDetector) {
- //adds LAr endcap + HEC but only has one end in geom file
- AEndcapCalorimeterDetector ecd = (AEndcapCalorimeterDetector) d[j];
- m_endc.add(ecd);
-
- }
-
- }
- }
-
- m_ogm = new ANObjectGeomMuon(m_boxes);
- m_ogc = new ANObjectGeomCalo(m_calo, 4, false);
- m_ogetp = new ANObjectGeomCalo(m_extt, 4, false);
- m_ogtsp = new ANObjectGeomCalo(m_mbts, 1, false);
- m_ogecp = new ANObjectGeomCalo(m_endc, 1, false);
- m_ogetm = new ANObjectGeomCalo(m_extt, 4, true);
- m_ogtsm = new ANObjectGeomCalo(m_mbts, 1, true);
- m_ogecm = new ANObjectGeomCalo(m_endc, 1, true);
-
-
- }
-
- public final void createData(float phi, float eta, float dr){
-
- AEvent ev = eventManager.getCurrentEvent();
- AJetData ajd = ev.getJetData();
- ajd.makeDrawList();
- m_jet = new ANObjectDataJet(ajd, phi, eta, dr);
-
- ALArData ald = ev.getLArData();
- ald.makeDrawList();
- m_lar = new ANObjectDataCell((ACalorimeterData)ald, phi, eta, dr);
-
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/nge/ANLinearTransition.java b/graphics/AtlantisJava/src/atlantis/nge/ANLinearTransition.java
deleted file mode 100644
index 918caf427d8..00000000000
--- a/graphics/AtlantisJava/src/atlantis/nge/ANLinearTransition.java
+++ /dev/null
@@ -1,140 +0,0 @@
-package atlantis.nge;
-
-import javax.media.opengl.GL;
-import javax.media.opengl.GLAutoDrawable;
-
-/**
- *
- * @author Adam Davison
- */
-public class ANLinearTransition extends ANLinearProjection {
-
- private ANLinearProjection m_a;
- private ANLinearProjection m_b;
- private ANAnimVar m_vtttime = new ANAnimVar();
- private ANAnimVar m_fadetime = new ANAnimVar();
-
- public ANLinearTransition(ANLinearProjection a, ANLinearProjection b) {
- m_a = a;
- m_b = b;
- }
-
- public ANAnimVar getTransformTimeVar() { return m_vtttime; }
- public ANAnimVar getFadeTimeVar() { return m_fadetime; }
-
- @Override
- public void applyLinearTransform(GLAutoDrawable drawable, int w, int h) {
- GL gl = drawable.getGL();
-
- double vtttime = m_vtttime.getValue();
-
- if (vtttime < 0.0) { vtttime = 0.0; }
-
- if (vtttime <= 0.0f) {
- m_a.applyLinearTransform(drawable, w, h);
- } else if (vtttime >= 1.0f) {
- m_b.applyLinearTransform(drawable, w, h);
- } else {
-
- float[] ma = new float[16];
- float[] mb = new float[16];
-
- // TODO: Make this whole thing better
- // Maybe this is ok. If getFloatv is problematic we may have trouble
- // but generally this allows us to transform between moving projections!
- gl.glMatrixMode(GL.GL_PROJECTION);
- gl.glPushMatrix();
- gl.glLoadIdentity();
- m_a.applyLinearTransform(drawable, w, h);
- gl.glGetFloatv(GL.GL_PROJECTION_MATRIX, ma, 0);
- gl.glLoadIdentity();
- m_b.applyLinearTransform(drawable, w, h);
- gl.glGetFloatv(GL.GL_PROJECTION_MATRIX, mb, 0);
- gl.glPopMatrix();
-
- float[] matrix = new float[16];
-
- // Scaling the matrix linearly means that x/w moves in a highly
- // non-linear way, especially where large scale changes in w are
- // involved, try to compensate this by using a highly non-linear
- // time coordinate
-
- // Final solution involves inverting the formula for the transformation
- // to calculate what time coordinate should be applied to ensure
- // linear motion of a test eye coordinate between it's clip
- // coordinates under transformation by ma and mb
- // Should document the maths at some point for sanity...
-
- // Operating on normalised time here, length 1
- double[] zerosums = new double[4];
- double[] gradsums = new double[4];
-
- for (int y = 0; y < 4; y++) {
- zerosums[y] = 0.0f;
- gradsums[y] = 0.0f;
- for (int x = 0; x < 4; x++) {
- zerosums[y] += ma[(4 * x) + y];
- gradsums[y] += mb[(4 * x) + y] - ma[(4 * x) + y];
- }
- }
-
- double w0 = ma[3] + ma[7] + ma[11] + ma[15];
- double wT = mb[3] + mb[7] + mb[11] + mb[15];
-
- double[] timeest = new double[3];
- for (int i = 0; i < 3; i++) {
- // Target value of coord/w
- double c0w = (ma[0 + i] + ma[4 + i] + ma[8 + i] + ma[12 + i]) / w0;
- double cTw = (mb[0 + i] + mb[4 + i] + mb[8 + i] + mb[12 + i]) / wT;
- // Beta is the target value for this component, this could be
- // a non-linear function for smoother transitions
- // i.e. something with 0 first derivative at times 0 and 1
- double beta = (c0w + ((cTw - c0w) * vtttime));
- timeest[i] = (zerosums[i] - zerosums[3] * beta) / (gradsums[3] * beta - gradsums[i]);
- }
-
- // They seem to tend to scale similarly at the moment but this
- // may fall apart for some really wierd transformation matrix...
- // ... just take the mean for now and look out for problems
- double meantime = (timeest[0] + timeest[1] + timeest[2]) / 3.0;
-
- for (int i = 0; i < 16; i++) {
- matrix[i] = (float) (ma[i] + ((mb[i] - ma[i]) * meantime));
- }
-
- gl.glMultMatrixf(matrix, 0);
- }
- }
-
- @Override
- public void drawScene(GLAutoDrawable drawable, ANRenderHints hint) {
- GL gl = drawable.getGL();
-
-
-
- if (m_fadetime.getValue() > 0.0) {
- m_a.drawScene(drawable, hint);
-
- gl.glMatrixMode(GL.GL_PROJECTION);
- gl.glPushMatrix();
- gl.glLoadIdentity();
- gl.glOrtho(-1.0, 1.0, -1.0, 1.0, -1.0, 1.0);
- ANColor bgc = ANColor.getBGColor();
- gl.glColor4f(bgc.r, bgc.g, bgc.b, (float)(m_fadetime.getValue()));
- gl.glDisable(GL.GL_DEPTH_TEST);
- gl.glBegin(GL.GL_QUADS);
- gl.glVertex3f(-1.0f, -1.0f, 0.0f);
- gl.glVertex3f(1.0f, -1.0f, 0.0f);
- gl.glVertex3f(1.0f, 1.0f, 0.0f);
- gl.glVertex3f(-1.0f, 1.0f, 0.0f);
- gl.glEnd();
- // FIXME: Don't always want this back on here potentially
- gl.glEnable(GL.GL_DEPTH_TEST);
- gl.glPopMatrix();
- gl.glClear(GL.GL_DEPTH_BUFFER_BIT);
- }
-
- m_b.drawScene(drawable, hint);
-
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/nge/ANManager.java b/graphics/AtlantisJava/src/atlantis/nge/ANManager.java
deleted file mode 100644
index 0b7350c29e4..00000000000
--- a/graphics/AtlantisJava/src/atlantis/nge/ANManager.java
+++ /dev/null
@@ -1,122 +0,0 @@
-package atlantis.nge;
-
-import atlantis.canvas.AWindow;
-import atlantis.utils.ALogger;
-import java.util.Hashtable;
-import java.util.logging.Level;
-import java.util.logging.Logger;
-import javax.media.opengl.GLAutoDrawable;
-import javax.media.opengl.GLCapabilities;
-import javax.media.opengl.GLDrawableFactory;
-import javax.media.opengl.GLEventListener;
-import javax.media.opengl.GLPbuffer;
-
-/**
- * This class keeps handy resources for you...
- *
- * @author Adam Davison
- */
-public class ANManager implements GLEventListener {
-
- private static ALogger logger = ALogger.getLogger(ANManager.class);
- private static ANManager manager = new ANManager();
-
- public static ANManager getManager() {
- return manager;
- }
- private Hashtable<AWindow, ANFrameManager> m_fms = null;
- private GLPbuffer m_buf = null;
- private GLEventListener m_gll;
-
- public ANManager() {
- m_fms = new Hashtable<AWindow, ANFrameManager>();
- }
-
- public ANFrameManager getFrameManager(AWindow w) {
- if (w == null) {
- return null;
- }
- ANFrameManager fm = m_fms.get(w);
- if (fm == null) {
- fm = new ANFrameManager(w);
- m_fms.put(w, fm);
- }
- return fm;
- }
-
- public static int getNextPower2(int v) {
- int p = 1;
- for (int i = 0; i < 16; i++) {
- p *= 2;
- if (p >= v) {
- return p;
- }
- }
-
- logger.warn("Returning non power of 2 buffer size!");
- return v;
- }
-
- public void requestBufferDraw(int w, int h, GLEventListener gll) {
-
- if (m_buf != null && m_buf.getWidth() >= w && m_buf.getHeight() >= h) {
- //System.out.println("BUFFER OK");
- // Do nothing
- } else {
- //System.out.println("BUFFER CREATE/REPLACE");
- if (m_buf != null) {
- m_buf.destroy();
- }
-
- GLCapabilities pbcap = new GLCapabilities();
- pbcap.setHardwareAccelerated(true);
- pbcap.setSampleBuffers(true);
- pbcap.setNumSamples(4);
- //pbcap.setPbufferRenderToTexture(true);
- //pbcap.setDoubleBuffered(false);
-
- //logger.info("w: " + m_w + " 2: " + getNextPower2(m_w));
-
- m_buf = GLDrawableFactory.getFactory().createGLPbuffer(pbcap, null,
- getNextPower2(w), getNextPower2(h), null);
-
- if (m_buf == null) {
- logger.error("Got null when trying to create pbuffer!");
- return;
- }
-
- m_buf.addGLEventListener(this);
-
- logger.info("Created pbuffer w: " + m_buf.getWidth() + " h: " + m_buf.getHeight());
-
- if (m_buf.getChosenGLCapabilities() == null) {
- logger.warn("Your implementation returns null for pbuffer capabilities...");
- } else {
- logger.info("Pbuffer hardware accelleration: " + m_buf.getChosenGLCapabilities().getHardwareAccelerated());
- }
- }
-
- // Set up events to go back to the projection
- m_gll = gll;
-
- //System.out.println("CALLING DISPLAY");
- m_buf.display();
- }
-
- public void init(GLAutoDrawable arg0) {
- m_gll.init(arg0);
- }
-
- public void display(GLAutoDrawable arg0) {
- //System.out.println("HIT DISPLAY CALLBACK");
- m_gll.display(arg0);
- }
-
- public void reshape(GLAutoDrawable arg0, int arg1, int arg2, int arg3, int arg4) {
- m_gll.reshape(arg0, arg1, arg2, arg3, arg4);
- }
-
- public void displayChanged(GLAutoDrawable arg0, boolean arg1, boolean arg2) {
- m_gll.displayChanged(arg0, arg1, arg2);
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/nge/ANObjectGenerator.java b/graphics/AtlantisJava/src/atlantis/nge/ANObjectGenerator.java
deleted file mode 100644
index 260518afd22..00000000000
--- a/graphics/AtlantisJava/src/atlantis/nge/ANObjectGenerator.java
+++ /dev/null
@@ -1,151 +0,0 @@
-package atlantis.nge;
-
-import atlantis.event.AEventManager;
-import atlantis.data.ACalorimeterData;
-import atlantis.event.AEvent;
-import atlantis.data.AJetData;
-import atlantis.data.ATrackData;
-import atlantis.geometry.ABoxDetector;
-import atlantis.nge.object.ANObject;
-import atlantis.nge.object.ANObjectList;
-import atlantis.nge.object.data.ANObjectPointing;
-import atlantis.nge.object.data.ANObjectTracks;
-import atlantis.nge.object.geometry.ANObjectGeomMuon;
-import atlantis.utils.ALogger;
-import atlantis.utils.AMath;
-import java.nio.IntBuffer;
-import java.util.ArrayList;
-import java.util.List;
-
-/**
- * These things get arrays of ANObjects out of the Atlantis data store
- *
- * The general idea is to separate the selection of objects from the way
- * they're represented in the projection. But I suspect that'll break down
- *
- * For now it's a static object but if we ever want to unstatic it then it's
- * only accessible via getGenerator() so it should be easy to refactor
- *
- * A lot of the functionality should one day be pushed back into the detector
- * objects themselves
- *
- * @author Adam Davison
- */
-public class ANObjectGenerator {
-
- private static ALogger logger = ALogger.getLogger(ANObjectGenerator.class);
- private static AEventManager eventManager = AEventManager.instance();
-
- private static ANObjectGenerator thegenerator = new ANObjectGenerator();
-
- private ANObjectGenerator() {
- }
-
- public static ANObjectGenerator getGenerator() {
- return thegenerator;
- }
-
- public ANObject getGeometryMuon() {
- return new ANObjectGeomMuon(ANTerribleHacks.getMuonDetectors());
- }
-
- // Ideally change layout of detector stuff so this can be more generic
- // not like one search per type, since basically everything has eta/phi
- public ANObject getGeometryMuon(float phi, float eta, float dr) {
- ArrayList<ABoxDetector> boxes = ANTerribleHacks.getMuonDetectors();
- ArrayList<ABoxDetector> hits = new ArrayList<ABoxDetector>();
-
- for (int i = 0; i < boxes.size(); i++) {
- ABoxDetector bd = boxes.get(i);
- // TODO - This formula is wrong, it's only checking one corner
- float etabd = (float) AMath.etaAbs(bd.getZMin(), bd.getRMin());
- if (AMath.deltaR(phi, eta, (float) bd.getPhi(), etabd) < dr) {
- hits.add(bd);
- }
- }
-
- return new ANObjectGeomMuon(hits);
- }
-
- public ANObject getDataCaloForJet(int j, String key) {
-
- ANObjectList ol = new ANObjectList();
-
- AEvent ev = eventManager.getCurrentEvent();
- AJetData jd = ev.getJetData();
- String assockey = jd.getFullName();
- int[][] assoc = ev.getAssociationManager().get(assockey, key);
- if (assoc == null) { return ol; }
- if (assoc[j] == null) { return ol; }
- int[] dl = new int[assoc[j].length];
- List calolist = ev.getCalorimeters();
- ACalorimeterData calo = null;
- for (int i = 0; i < calolist.size(); i++) {
- ACalorimeterData tc = (ACalorimeterData)(calolist.get(i));
- if (tc.getName().equals(key)) {
- calo = tc;
- }
- }
- if (calo == null) {
- logger.error("Requested unavailable calo key!");
- return ol;
- }
-
- calo.makeDrawList();
- int[] calodl = calo.getDrawList();
-
- IntBuffer ib = IntBuffer.allocate(assoc[j].length);
- for (int i = 0; i < assoc[j].length; i++) {
- int id = assoc[j][i];
- int index = calo.getIndexFromId(id);
- boolean found = false;
- for (int d = 0; d < calo.getNumDraw(); d++) {
- if (calodl[d] == index) {
- found = true;
- }
- }
- if (found) {
- ib.put(index);
- }
- }
-
- ol.addObject(new ANObjectPointing(calo, ib.array(), ib.position(), true));
- ol.addObject(new ANObjectPointing(calo, ib.array(), ib.position(), false));
-
- return ol;
- }
-
- public ANObject getInDetTracksForJet(int j) {
- AEvent ev = eventManager.getCurrentEvent();
- AJetData jd = ev.getJetData();
- int jetid = jd.getIdFromIndex(j);
- ATrackData tracks = ev.getTrackData("InDetTrack");
- int[] trackdl = tracks.getDrawList();
- String jetassockey = jd.getFullName();
- String trackassockey = tracks.getName() + tracks.getStoreGateKey();
- int[][] assoc = ev.getAssociationManager().get(trackassockey, jetassockey);
-
- IntBuffer ib = IntBuffer.allocate(assoc.length);
- for (int i = 0; i < assoc.length; i++) {
- for (int s = 0; s < assoc[i].length; s++) {
- if (assoc[i][s] == jetid) {
- boolean display = false;
- for (int d = 0; d < trackdl.length; d++) {
- if (trackdl[d] == i) {
- display = true;
- }
- }
- if (display) {ib.put(i);}
- }
- }
- }
-
- return new ANObjectTracks(tracks, ib.array());
- }
-
- public ANObject getInDetTracks() {
- AEvent ev = eventManager.getCurrentEvent();
- ATrackData td = ev.getTrackData("InDetTrack");
- return new ANObjectTracks(td);
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/nge/ANPickDrawer.java b/graphics/AtlantisJava/src/atlantis/nge/ANPickDrawer.java
deleted file mode 100644
index 938f0a4f370..00000000000
--- a/graphics/AtlantisJava/src/atlantis/nge/ANPickDrawer.java
+++ /dev/null
@@ -1,59 +0,0 @@
-package atlantis.nge;
-
-import atlantis.canvas.AWindow;
-import javax.media.opengl.GLAutoDrawable;
-import javax.media.opengl.GLEventListener;
-
-/**
- *
- * @author Adam Davison
- */
-public class ANPickDrawer implements GLEventListener {
-
- private AWindow m_window;
- private int m_w;
- private int m_h;
- private int m_x;
- private int m_y;
-
- private ANPickResult m_pr;
- private boolean m_pickdone;
-
- private ANPickListener m_pl;
-
- public ANPickDrawer(AWindow window, int w, int h, int x, int y, ANPickListener pl) {
- m_window = window;
- m_w = w;
- m_h = h;
- m_x = x;
- m_y = y;
- m_pickdone = false;
- m_pl = pl;
- }
-
- public void doPick() {
- ANManager.getManager().requestBufferDraw(m_w, m_h, this);
- }
-
- public void init(GLAutoDrawable arg0) {
- //throw new UnsupportedOperationException("Not supported yet.");
- }
-
- public void display(GLAutoDrawable arg0) {
- m_pr = ANManager.getManager().getFrameManager(m_window).pick(arg0, m_w, m_h, m_x, m_y);
- m_pickdone = true;
-
- if (m_pl != null) {
- m_pl.pickCompleted(m_pr);
- }
- }
-
- public void reshape(GLAutoDrawable arg0, int arg1, int arg2, int arg3, int arg4) {
- //throw new UnsupportedOperationException("Not supported yet.");
- }
-
- public void displayChanged(GLAutoDrawable arg0, boolean arg1, boolean arg2) {
- //throw new UnsupportedOperationException("Not supported yet.");
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/nge/ANPickHandler.java b/graphics/AtlantisJava/src/atlantis/nge/ANPickHandler.java
deleted file mode 100644
index baaeb581efe..00000000000
--- a/graphics/AtlantisJava/src/atlantis/nge/ANPickHandler.java
+++ /dev/null
@@ -1,11 +0,0 @@
-package atlantis.nge;
-
-/**
- *
- * @author Adam Davison
- */
-public interface ANPickHandler {
-
- // Turn your 32 bits of data into a result somehow
- public ANPickResult getHitInfo(int data);
-}
diff --git a/graphics/AtlantisJava/src/atlantis/nge/ANPickHandlerSimple.java b/graphics/AtlantisJava/src/atlantis/nge/ANPickHandlerSimple.java
deleted file mode 100644
index 7b1f713e79e..00000000000
--- a/graphics/AtlantisJava/src/atlantis/nge/ANPickHandlerSimple.java
+++ /dev/null
@@ -1,19 +0,0 @@
-package atlantis.nge;
-
-/**
- *
- * @author Adam Davison
- */
-public class ANPickHandlerSimple implements ANPickHandler {
-
- private String m_name;
-
- public ANPickHandlerSimple(String name) {
- m_name = name;
- }
-
- public ANPickResult getHitInfo(int data) {
- return new ANPickResult(m_name);
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/nge/ANPickHelper.java b/graphics/AtlantisJava/src/atlantis/nge/ANPickHelper.java
deleted file mode 100644
index e8912acfdf9..00000000000
--- a/graphics/AtlantisJava/src/atlantis/nge/ANPickHelper.java
+++ /dev/null
@@ -1,51 +0,0 @@
-package atlantis.nge;
-
-import atlantis.nge.object.ANObject;
-import java.lang.ref.WeakReference;
-import java.util.ArrayList;
-import javax.media.opengl.GL;
-
-/**
- *
- * @author Adam Davison
- */
-public class ANPickHelper {
-
- private ArrayList<ANObject> m_all = new ArrayList<ANObject>();
- private GL m_gl;
-
- public ANPickHelper(GL gl) {
- m_gl = gl;
- }
-
- public ANPickHandler getPickHandler(int id) {
- System.out.println(m_all.get(id));
- return m_all.get(id).getPickHandler();
- }
-
- public int getIndex(ANObject p) {
- int id = m_all.indexOf(p);
-
- if (id == -1) {
- m_all.add(p);
- id = m_all.indexOf(p);
- }
-
- return id;
- }
-
- // Worry about it being fast much later...
- public void startPick(ANObject p, int data) {
- startPick(getIndex(p), data);
- }
-
- public void startPick(int pickid, int data) {
- m_gl.glPushName(pickid);
- m_gl.glPushName(data);
- }
-
- public void endPick() {
- m_gl.glPopName();
- m_gl.glPopName();
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/nge/ANPickListener.java b/graphics/AtlantisJava/src/atlantis/nge/ANPickListener.java
deleted file mode 100644
index f7a118143fa..00000000000
--- a/graphics/AtlantisJava/src/atlantis/nge/ANPickListener.java
+++ /dev/null
@@ -1,15 +0,0 @@
-/*
- * To change this template, choose Tools | Templates
- * and open the template in the editor.
- */
-
-package atlantis.nge;
-
-/**
- *
- * @author Adam
- */
-public interface ANPickListener {
-
- public void pickCompleted(ANPickResult pr);
-}
diff --git a/graphics/AtlantisJava/src/atlantis/nge/ANPickResult.java b/graphics/AtlantisJava/src/atlantis/nge/ANPickResult.java
deleted file mode 100644
index d1d05d7efcf..00000000000
--- a/graphics/AtlantisJava/src/atlantis/nge/ANPickResult.java
+++ /dev/null
@@ -1,21 +0,0 @@
-package atlantis.nge;
-
-/**
- * This class encapsulates all the information you might want to get out of a
- * pick interaction and back into Atlantis
- *
- * @author Adam Davison
- */
-public class ANPickResult {
-
- private String m_result;
-
- public ANPickResult(String result) {
- m_result = result;
- }
-
- public String getResult() {
- return m_result;
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/nge/ANPickResultPrinter.java b/graphics/AtlantisJava/src/atlantis/nge/ANPickResultPrinter.java
deleted file mode 100644
index 1b28bd2a45e..00000000000
--- a/graphics/AtlantisJava/src/atlantis/nge/ANPickResultPrinter.java
+++ /dev/null
@@ -1,17 +0,0 @@
-package atlantis.nge;
-
-import atlantis.output.ALogInterface;
-import atlantis.output.AOutput;
-
-/**
- *
- * @author Adam Davison
- */
-public class ANPickResultPrinter implements ANPickListener {
-
- public void pickCompleted(ANPickResult pr) {
- if (pr != null) {
- AOutput.append("Picked: " + pr.getResult() + "\n\n", ALogInterface.PICK);
- }
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/nge/ANProjection.java b/graphics/AtlantisJava/src/atlantis/nge/ANProjection.java
deleted file mode 100644
index f49fb76086b..00000000000
--- a/graphics/AtlantisJava/src/atlantis/nge/ANProjection.java
+++ /dev/null
@@ -1,20 +0,0 @@
-package atlantis.nge;
-
-import javax.media.opengl.GLAutoDrawable;
-
-/**
- * So this class represents a projection, which in this model is the class
- * that decides what objects to draw and how to draw them
- *
- * It is controlled by the ANFrameManager which tells it what to do.
- *
- * It shouldn't touch the Atlantis core at all. It gets ANObjects from an
- * ANObjectGenerator which is can then render in any order it chooses into a
- * renderer it can configure in any way it likes.
- *
- * @author Adam Davison
- */
-public abstract class ANProjection {
-
- public abstract void display(GLAutoDrawable drawable, int w, int h, ANRenderHints hint);
-}
diff --git a/graphics/AtlantisJava/src/atlantis/nge/ANProjection3D.java b/graphics/AtlantisJava/src/atlantis/nge/ANProjection3D.java
deleted file mode 100644
index 954f0ead445..00000000000
--- a/graphics/AtlantisJava/src/atlantis/nge/ANProjection3D.java
+++ /dev/null
@@ -1,90 +0,0 @@
-package atlantis.nge;
-
-import atlantis.nge.object.ANObjectTestAxes;
-import javax.media.opengl.GL;
-import javax.media.opengl.GLAutoDrawable;
-
-import atlantis.parameters.APar;
-
-/**
- * The plain 3d projection, simple for debugging
- *
- * @author Adam Davison, Mark Stockton
- */
-public class ANProjection3D extends ANLinearProjection {
-
-
- private float m_phi;
- private float m_elev;
- private float m_distance;
- private float m_tx, m_ty, m_tz;
-
- public ANProjection3D() {
-
- m_phi = -45.0f;
- m_elev = 20.0f;
- m_distance = 3000.0f;
- m_tx = 0.0f;
- m_ty = 0.0f;
- m_tz = 0.0f;
-
- // create the object generator here
- }
-
- @Override
- public void applyLinearTransform(GLAutoDrawable drawable, int width, int height) {
- GL gl = drawable.getGL();
-
- float w = 1000.0f;
- float h = (w * drawable.getHeight()) / drawable.getWidth();
-
- gl.glFrustum(-w, w, -h, h, 1000.0f, 10000.0f);
-
- // Remember, these are in reverse so essentially:
- // 0. GL default, start at 0,0,-1 looking at 0,0,0
- // 1. Spin around y axis to give phi
- // 2. Spin around x axis to give elevation
- // 3. Pull back to give distance
- gl.glTranslatef(0.0f, 0.0f, -m_distance);
- gl.glRotatef(m_elev, 1.0f, 0.0f, 0.0f);
- gl.glRotatef(m_phi, 0.0f, 1.0f, 0.0f);
- gl.glTranslatef(-m_tx, -m_ty, -m_tz);
- }
-
- @Override
- public void drawScene(GLAutoDrawable drawable, ANRenderHints hint) {
- ANRenderer r = new ANRendererBasic(drawable);
- if(APar.instance().get("N3D","Axis").getStatus()){
- ANObjectTestAxes ota = new ANObjectTestAxes();
- ota.render(r, hint);
- }
-
- if (m_ogm == null) {
- //m_ogm = new ANObjectGeom();
- createGeometry();
- }
-
- m_ogm.render(r, hint);
- m_ogc.render(r, hint);
- m_ogetp.render(r, hint);
- m_ogecp.render(r, hint);
- m_ogtsp.render(r, hint);
- m_ogetm.render(r, hint);
- m_ogecm.render(r, hint);
- m_ogtsm.render(r, hint);
-
- createData();
- m_jet.render(r, hint);
-
- }
-
- public void dPhi(float phi) {
- m_phi += phi;
- }
-
- public void dElev(float elev) {
- m_elev += elev;
- if (m_elev < -90.0f) { m_elev = -90.0f; }
- if (m_elev > 90.0f) { m_elev = 90.0f; }
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/nge/ANProjectionPhysics.java b/graphics/AtlantisJava/src/atlantis/nge/ANProjectionPhysics.java
deleted file mode 100644
index 47e95f65d9f..00000000000
--- a/graphics/AtlantisJava/src/atlantis/nge/ANProjectionPhysics.java
+++ /dev/null
@@ -1,181 +0,0 @@
-package atlantis.nge;
-
-import atlantis.event.AData;
-import atlantis.data.AJetData;
-import atlantis.nge.object.ANObjectTestAxes;
-import javax.media.opengl.GL;
-import javax.media.opengl.GLAutoDrawable;
-
-import atlantis.parameters.APar;
-import atlantis.utils.A3Vector;
-import atlantis.utils.AMath;
-import javax.media.opengl.glu.GLU;
-
-/**
- * The plain 3d projection, simple for debugging
- *
- * @author Adam Davison, Mark Stockton
- */
-public class ANProjectionPhysics extends ANLinearProjection {
-
- private float m_focus_phi;
- private float m_focus_eta;
- private ANAnimVar m_phi;
- private ANAnimVar m_elev;
- private float m_distance;
- private float m_tx, m_ty, m_tz;
- private AData m_data;
- private int m_data_index;
-
- public ANProjectionPhysics() {
-
- m_focus_phi = 0;
- m_focus_eta = 0;
- m_phi = new ANAnimVar(-45.0);
- m_elev = new ANAnimVar(20.0);
- m_distance = 2000.0f;
- m_tx = 0.0f;
- m_ty = 0.0f;
- m_tz = 0.0f;
-
-
- // create the object generator here
- }
-
- @Override
- public void applyLinearTransform(GLAutoDrawable drawable, int w, int h) {
- GL gl = drawable.getGL();
-
- //float w = 1000.0f;
- //float h = (w * drawable.getHeight()) / drawable.getWidth();
-
- //gl.glFrustum(-w, w, -h, h, 1000.0f, 10000.0f);
- GLU glu = new GLU();
- glu.gluPerspective(7.0f, w / h, 200.0f, 10000.0f);
-
- /*gl.glTranslatef(0.0f, 0.0f, -2000.0f);
- gl.glRotatef(m_elev, 1.0f, 0.0f, 0.0f);
- gl.glRotatef(m_phi, 0.0f, 1.0f, 0.0f);
- gl.glRotatef(m_focus_phi, 0.0f, 0.0f, 1.0f);
- gl.glRotatef(-theta, 0.0f, 1.0f, 0.0f);
- gl.glTranslatef(0.0f, 0.0f, 500.0f);
- gl.glRotatef(theta, 0.0f, 1.0f, 0.0f);
- gl.glRotatef(-m_focus_phi, 0.0f, 0.0f, 1.0f);*/
- // Remember, these are in reverse so essentially:
- // 0. GL default, start at 0,0,-1 looking at 0,0,0
- // 1. Spin around y axis to give phi
- // 2. Spin around x axis to give elevation
- // 3. Pull back to give distance
- gl.glTranslatef(0.0f, 0.0f, -m_distance);
- gl.glRotatef((float) m_elev.getValue(), 1.0f, 0.0f, 0.0f);
- gl.glRotatef((float) m_phi.getValue(), 0.0f, 1.0f, 0.0f);
- gl.glTranslatef(-m_tx, -m_ty, -m_tz);
-
-
- }
-
- @Override
- public void drawScene(GLAutoDrawable drawable, ANRenderHints hint) {
- ANRenderer r = new ANRendererBasic(drawable);
-
- GL gl = drawable.getGL();
- gl.glColor3f(1.0f, 0.0f, 0.0f);
- gl.glPointSize(2.0f);
- gl.glBegin(GL.GL_POINTS);
- gl.glVertex3f(m_tx, m_ty, m_tz);
- gl.glEnd();
-
- if (APar.instance().get("NPhysics", "Axis").getStatus()) {
- ANObjectTestAxes ota = new ANObjectTestAxes();
- ota.render(r, hint);
- }
-
- //ANObjectGenerator.getGenerator()
- // .getGeometryMuon(m_focus_phi, m_focus_eta, 1.0f).render(r, pick);
- //.getGeometryMuon().render(r, pick);
-
- ANObjectGenerator.getGenerator().getDataCaloForJet(m_data_index, "LAr").render(r, hint);
- ANObjectGenerator.getGenerator().getDataCaloForJet(m_data_index, "TILE").render(r, hint);
- ANObjectGenerator.getGenerator().getDataCaloForJet(m_data_index, "HEC").render(r, hint);
- //ANObjectGenerator.getGenerator().getDataCaloForJet(m_data_index, "FCAL").render(r, pick);
- ANObjectGenerator.getGenerator().getInDetTracksForJet(m_data_index).render(r, hint);
-
- //createGeometry(m_focus_phi, m_focus_eta, 1.0f);
- //m_ogm.render(r, pick);
- /*m_ogc.render(r);
- m_ogetp.render(r);
- m_ogecp.render(r);
- m_ogtsp.render(r);
- m_ogetm.render(r);
- m_ogecm.render(r);
- m_ogtsm.render(r);*/
-
- //createData(m_focus_phi, m_focus_eta, 2.0f);
- //m_jet.render(r, pick);
- //m_lar.render(r, pick);
-
- }
-
- public void dPhi(float phi) {
- m_phi.setValue(m_phi.getValue() + phi);
- }
-
- public void dElev(float elev) {
- m_elev.setValue(m_elev.getValue() + elev);
- if (m_elev.getValue() < -90.0) {
- m_elev.setValue(-90.0);
- }
- if (m_elev.getValue() > 90.0) {
- m_elev.setValue(90.0);
- }
- }
-
- public void lookAt(AJetData jd, int jet_index) {
-
- m_data = jd;
- m_data_index = jet_index;
-
- A3Vector centre = ANTerribleHacks.getCellCentreLArForJet(jet_index);
- m_tx = (float) centre.x;
- m_ty = (float) centre.y;
- m_tz = (float) centre.z;
-
- float phi = jd.getPhi(jet_index);
- float eta = jd.getEta(jet_index);
-
- m_focus_phi = phi;
- m_focus_eta = eta;
-
- // m_elev is Spin around y axis to give phi
- // m_phi is Spin around x axis to give elevation
- float theta = (float) (2.0f * Math.atan(Math.exp(eta)));
- theta = (float) Math.toDegrees(theta);
- phi = (float) Math.toDegrees(phi);
-
- //produce coords to try to look perpendicular to jet
- //needs improving
- if (eta < 0) {
- eta = -1;
- } else {
- eta = 1;
- }
- float x = (float) (m_distance * Math.cos(phi) * Math.sin(theta));
- float z = (float) (m_distance * Math.cos(theta));
-
- float rot = (float) Math.toDegrees(Math.atan(z / x));
-
- if (theta < 90) {
- m_elev.setValue(eta * -theta);
- m_phi.setValue(rot);
- } else {
- m_elev.setValue(eta * (180. - theta));
- m_phi.setValue(rot - 45.);
- }
- //actually dont need to set melev
- m_elev.setValue(0);
-
- }
-
- public ANAnimVar getElevVar() { return m_elev; }
- public ANAnimVar getPhiVar() { return m_phi; }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/nge/ANProjectionYX.java b/graphics/AtlantisJava/src/atlantis/nge/ANProjectionYX.java
deleted file mode 100644
index 6ca68b65f10..00000000000
--- a/graphics/AtlantisJava/src/atlantis/nge/ANProjectionYX.java
+++ /dev/null
@@ -1,46 +0,0 @@
-package atlantis.nge;
-
-import atlantis.nge.object.ANObjectTestAxes;
-import javax.media.opengl.GL;
-import javax.media.opengl.GLAutoDrawable;
-
-import atlantis.parameters.APar;
-
-/**
- *
- * @author Adam Davison, Mark Stockton
- */
-public class ANProjectionYX extends ANLinearProjection {
-
-
- @Override
- public void applyLinearTransform(GLAutoDrawable drawable, int w, int h) {
- GL gl = drawable.getGL();
-
- gl.glMatrixMode(GL.GL_PROJECTION);
- float scale = ((float) drawable.getHeight()) / ((float) drawable.getWidth());
- gl.glOrtho(-1500.0f, 1500.0f, -1500.0f * scale, 1500.0f * scale, -100000.0f, 100000.0f);
- }
-
- @Override
- public void drawScene(GLAutoDrawable drawable, ANRenderHints hint) {
- ANRenderer r = new ANRendererBasic(drawable);
- if(APar.instance().get("NYX","Axis").getStatus()){
- ANObjectTestAxes ota = new ANObjectTestAxes();
- ota.render(r, hint);
- }
-
- if (m_ogm == null) {
- //m_ogm = new ANObjectGeomMuon();
- createGeometry();
- }
-
- m_ogm.render(r, hint);
-
- m_ogc.render(r, hint);
-
- createData();
- m_jet.render(r, hint);
- m_lar.render(r, hint);
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/nge/ANRenderHints.java b/graphics/AtlantisJava/src/atlantis/nge/ANRenderHints.java
deleted file mode 100644
index c370fdf3a98..00000000000
--- a/graphics/AtlantisJava/src/atlantis/nge/ANRenderHints.java
+++ /dev/null
@@ -1,33 +0,0 @@
-package atlantis.nge;
-
-/**
- *
- * @author Adam Davison
- */
-public class ANRenderHints {
-
- private boolean pick;
- private ANPickHelper pickHelper;
-
- public ANRenderHints() {
- pick = false;
- pickHelper = null;
- }
-
- public ANPickHelper getPickHelper() {
- return pickHelper;
- }
-
- public void setPickHelper(ANPickHelper pickHelper) {
- this.pickHelper = pickHelper;
- }
-
- public boolean getPick() {
- return pick;
- }
-
- public void setPick(boolean pick) {
- this.pick = pick;
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/nge/ANRenderer.java b/graphics/AtlantisJava/src/atlantis/nge/ANRenderer.java
deleted file mode 100644
index 91817987407..00000000000
--- a/graphics/AtlantisJava/src/atlantis/nge/ANRenderer.java
+++ /dev/null
@@ -1,22 +0,0 @@
-package atlantis.nge;
-
-/**
- * This class provides an interface for drawing into a context of some kind
- * essentially it's a drawing API, much like java.awt.Graphics but rather
- * tuned towards drawing 3-d objects via OpenGL
- *
- * @author Adam Davison
- */
-public abstract class ANRenderer {
-
- public abstract void begin(int type);
- public abstract void end();
-
- public abstract void vertex3f(float x, float y, float z);
- public abstract void color3f(float r, float g, float b);
- public abstract void color4f(float r, float g, float b, float a);
- public abstract void lineWidth(float w);
-
- public abstract void drawVertices(float[] vert);
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/nge/ANRendererBasic.java b/graphics/AtlantisJava/src/atlantis/nge/ANRendererBasic.java
deleted file mode 100644
index c0895accf38..00000000000
--- a/graphics/AtlantisJava/src/atlantis/nge/ANRendererBasic.java
+++ /dev/null
@@ -1,88 +0,0 @@
-package atlantis.nge;
-
-import javax.media.opengl.GL;
-import javax.media.opengl.GLAutoDrawable;
-import javax.media.opengl.glu.GLU;
-
-/**
- *
- * @author Adam Davison
- */
-public class ANRendererBasic extends ANRenderer {
-
- private GLAutoDrawable m_drawable;
- private GL m_gl;
-
- public ANRendererBasic(GLAutoDrawable drawable) {
- m_drawable = drawable;
- m_gl = drawable.getGL();
- }
-
- @Override
- public void begin(int type) {
- m_gl.glBegin(type);
- }
-
- @Override
- public void end() {
- m_gl.glEnd();
- }
-
- @Override
- public void drawVertices(float[] vert) {
- throw new UnsupportedOperationException("Not supported yet.");
- }
-
- @Override
- public void vertex3f(float x, float y, float z) {
- // if (m_btesting) {
- // doBoundTest(x, y, z);
- // }
-
- m_gl.glVertex3f(x, y, z);
- }
-
- @Override
- public void color3f(float r, float g, float b) {
- m_gl.glColor3f(r, g, b);
- }
-
- @Override
- public void lineWidth(float w) {
- m_gl.glLineWidth(w);
- }
-
- @Override
- public void color4f(float r, float g, float b, float a) {
- m_gl.glColor4f(r, g, b, a);
- }
-
-/* private float[] m_tmat = new float[16];
- private float m_minx;
- private float m_maxx;
- private float m_miny;
- private float m_maxy;
-
- private boolean m_btesting = false;
-
- public void beginBoundsTest() {
- // This function assumes no new transformations take place
- // So bear that in mind...
-
- m_gl.glGetFloatv(GL.GL_MODELVIEW_MATRIX, m_tmat, 0);
- m_minx = Float.MAX_VALUE;
- m_maxx = Float.MIN_VALUE;
- m_miny = Float.MAX_VALUE;
- m_maxy = Float.MIN_VALUE;
-
- m_btesting = true;
- }
-
- public void stopBoundsTest() {
- m_btesting = false;
- }
-
- private void doBoundTest(float x, float y, float z) {
-
- }*/
-}
diff --git a/graphics/AtlantisJava/src/atlantis/nge/ANSelectionList.java b/graphics/AtlantisJava/src/atlantis/nge/ANSelectionList.java
deleted file mode 100644
index 52e404eda2a..00000000000
--- a/graphics/AtlantisJava/src/atlantis/nge/ANSelectionList.java
+++ /dev/null
@@ -1,81 +0,0 @@
-package atlantis.nge;
-
-import java.nio.IntBuffer;
-
-/**
- *
- * @author Adam Davison
- */
-public class ANSelectionList {
-
- private long[] m_zmax;
- private long[] m_zmin;
- private int[][] m_names;
- private int m_ent;
-
- public ANSelectionList(IntBuffer ib) {
- int s = ib.limit();
- // Shortest possible entry is 4 ints long, could two pass to get
- // memory requirements right but better to just spend a few bytes
- int maxent = s/4;
- m_zmax = new long[maxent];
- m_zmin = new long[maxent];
- m_names = new int[maxent][];
-
- /*for (int i = 0; i < 20; i++) {
- System.out.print(":" + ib.get(i));
- }
- System.out.println();*/
-
- m_ent = 0;
- int pos = 0;
- while((pos = processEntry(ib, pos, m_ent)) != -1) {
- m_ent++;
- }
- //System.out.println("Got " + m_ent + " entries in selection list");
- }
-
- private int processEntry(IntBuffer ib, int pos, int ent) {
- //System.out.println("Processing at " + pos + " entry " + ent);
- int nn = ib.get(pos);
- //System.out.println("nn: " + nn);
- if (nn == 0) {
- // At the end
- return -1;
- }
- m_zmin[ent] = getUnsigned(ib.get(pos+1));
- m_zmax[ent] = getUnsigned(ib.get(pos+2));
- m_names[ent] = new int[nn];
- for (int i = 0; i < nn; i++) {
- m_names[ent][i] = ib.get(pos+3+i);
- //System.out.println("Name " + i + " is " + m_names[ent][i]);
- }
- pos += 3 + nn;
- return pos;
- }
-
- public long getUnsigned(int a) {
- long b = a;
- if (b < 0) { b -= 2L*(long)Integer.MIN_VALUE; }
- return b;
- }
-
- public int[] getFrontID() {
- int found = -1;
- long max = Long.MIN_VALUE;
- for (int i = 0; i < m_ent; i++) {
- System.out.println(m_zmax[i] + ":" + max);
- if (m_zmax[i] > max) {
- max = m_zmax[i];
- found = i;
- }
- }
-
- System.out.println(found);
- if (found == -1) {
- return null;
- } else {
- return m_names[found];
- }
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/nge/ANTerribleHacks.java b/graphics/AtlantisJava/src/atlantis/nge/ANTerribleHacks.java
deleted file mode 100644
index 1fd1b1c106a..00000000000
--- a/graphics/AtlantisJava/src/atlantis/nge/ANTerribleHacks.java
+++ /dev/null
@@ -1,119 +0,0 @@
-package atlantis.nge;
-
-import atlantis.event.AEvent;
-import atlantis.event.AEventManager;
-import atlantis.data.AJetData;
-import atlantis.data.ALArData;
-import atlantis.geometry.AAtlasDetector;
-import atlantis.geometry.ABarrelCalorimeterDetector;
-import atlantis.geometry.ABoxDetector;
-import atlantis.geometry.ACalorimeterDetector;
-import atlantis.geometry.ADetector;
-import atlantis.geometry.ADetectors;
-import atlantis.geometry.AEndcapCalorimeterDetector;
-import atlantis.geometry.AEndcapCryostatDetector;
-import atlantis.utils.A3Vector;
-import java.util.ArrayList;
-
-/**
- * This class encapsulates everything that we shouldn't have to do in one place
- *
- * Mainly it relates to the fact that there's no way to ask the detector
- * store for something like the muon geometry only at the moment
- *
- * One day if we really use this code then we need to add sensible access
- * methods like that to the detector store
- *
- * This class should definitely be deleted one day
- *
- * @author Adam Davison
- */
-public class ANTerribleHacks {
-
- private static ArrayList<ABoxDetector> m_boxes = null;
- private static ArrayList<ACalorimeterDetector> m_calo = null;
- private static ArrayList<ACalorimeterDetector> m_extt = null;
- private static ArrayList<ACalorimeterDetector> m_mbts = null;
- private static ArrayList<ACalorimeterDetector> m_endc = null;
-
- public static ArrayList<ABoxDetector> getMuonDetectors() {
- if (m_boxes == null) {
- fillArrays();
- }
- return m_boxes;
- }
-
- private static void fillArrays() {
- m_boxes = new ArrayList<ABoxDetector>();
- m_calo = new ArrayList<ACalorimeterDetector>();
- m_extt = new ArrayList<ACalorimeterDetector>();
- m_mbts = new ArrayList<ACalorimeterDetector>();
- m_endc = new ArrayList<ACalorimeterDetector>();
-
- ADetectors[] ds = AAtlasDetector.getDetector().getDetectors();
- for (int i = 0; i < ds.length; i++) {
- ADetector[] d = ds[i].getDetectors();
- for (int j = 0; j < d.length; j++) {
- if (d[j] instanceof ABoxDetector) {
- ABoxDetector bd = (ABoxDetector) d[j];
- //TODO temporary code to show cut away detector
- //if((bd.getPhi()>1.2 && bd.getPhi()<5.1) || !ACanvas.getCanvas().getPaintingWindow().getProjection().getName().equals("N3D"))
- m_boxes.add(bd);
- } else if (d[j] instanceof ABarrelCalorimeterDetector) {
- ACalorimeterDetector cd = (ACalorimeterDetector) d[j];
- //extended tile only has one end in geom file and not relicated like others
- if (d[j].getName().equals("Extended TILE")) {
- m_extt.add(cd);
- } else {
- m_calo.add(cd);
- }
-
- } else if (d[j] instanceof AEndcapCryostatDetector) {
- //adds MBTS but only has one end in geom file
- AEndcapCryostatDetector ecd = (AEndcapCryostatDetector) d[j];
- m_mbts.add(ecd);
- } else if (d[j] instanceof AEndcapCalorimeterDetector) {
- //adds LAr endcap + HEC but only has one end in geom file
- AEndcapCalorimeterDetector ecd = (AEndcapCalorimeterDetector) d[j];
- m_endc.add(ecd);
-
- }
-
- }
- }
- }
-
- public static A3Vector getCellCentreLArForJet(int j) {
- float xsum = 0.0f;
- float ysum = 0.0f;
- float zsum = 0.0f;
- int count = 0;
- AEvent ev = AEventManager.instance().getCurrentEvent();
- AJetData jd = ev.getJetData();
- String assockey = jd.getFullName();
- int[][] assoc = ev.getAssociationManager().get(assockey, "LAr");
- int[] dl = new int[assoc[j].length];
- ALArData calo = ev.getLArData();
- for (int i = 0; i < assoc[j].length; i++) {
- int index = calo.getIndexFromId(assoc[j][i]);
- float eta = (float) (calo.getEta(index));
-
- float theta = (float) (2.0f * Math.atan(Math.exp(-eta)));
-
- float phi = (float) (calo.getPhi(index));
-
- float rmin = (float) calo.getDetector(index).getRMin();
- float rmax = (float) calo.getDetector(index).getRMax();
- float r = 0.5f * (rmin + rmax);
-
- xsum += (float) (r * Math.cos(phi));
- ysum += (float) (r * Math.sin(phi));
- zsum += (float) (r / Math.tan(theta));
- count++;
- }
-
-
-
- return new A3Vector(xsum / count, ysum / count, zsum / count);
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/nge/ANTestWindow.java b/graphics/AtlantisJava/src/atlantis/nge/ANTestWindow.java
deleted file mode 100644
index f4340ca844e..00000000000
--- a/graphics/AtlantisJava/src/atlantis/nge/ANTestWindow.java
+++ /dev/null
@@ -1,119 +0,0 @@
-package atlantis.nge;
-
-import com.sun.opengl.util.Screenshot;
-import java.awt.Graphics;
-import java.awt.image.BufferedImage;
-import java.util.Random;
-import javax.media.opengl.GL;
-import javax.media.opengl.GLAutoDrawable;
-import javax.media.opengl.GLCapabilities;
-import javax.media.opengl.GLDrawableFactory;
-import javax.media.opengl.GLEventListener;
-import javax.media.opengl.GLPbuffer;
-import javax.swing.JComponent;
-import javax.swing.JFrame;
-
-/**
- * The ubiquitous test window class...
- *
- * @author Adam Davison
- */
-public class ANTestWindow implements GLEventListener {
-
- private Random m_r = new Random();
-
- private int m_h = 400;
- private int m_w = 400;
-
- private JFrame m_f;
- private BufferedImage m_img;
-
- private ANFrameManager m_fm;
-
- private GLPbuffer m_context;
-
- public ANTestWindow() {
- m_f = new JFrame("Happy Time!");
- m_f.setBounds(100, 100, m_w, m_h);
-
- TestComponent tc = new TestComponent(this);
-
- m_f.add(tc);
-
- GLCapabilities pbcap = new GLCapabilities();
- pbcap.setSampleBuffers(true);
- pbcap.setNumSamples(4);
- //pbcap.setPbufferRenderToTexture(true);
- //pbcap.setDoubleBuffered(false);
- m_context = GLDrawableFactory.getFactory().createGLPbuffer(pbcap, null, m_w, m_h, null);
- m_context.addGLEventListener(this);
-
- m_fm = new ANFrameManager(null);
-
- m_f.setVisible(true);
-
- //(new Thread(new TimingThread(tc))).start();
- }
-
- public void causeRepaint(Graphics g) {
- m_context.display();
- g.drawImage(m_img, 0, 0, null);
- }
-
- public void init(GLAutoDrawable arg0) {
- }
-
- public void display(GLAutoDrawable arg0) {
- //m_fm.display(arg0);
- m_img = Screenshot.readToBufferedImage(m_w, m_h);
- }
-
- public void reshape(GLAutoDrawable arg0, int arg1, int arg2, int arg3, int arg4) {
- }
-
- public void displayChanged(GLAutoDrawable arg0, boolean arg1, boolean arg2) {
- throw new UnsupportedOperationException("Not supported yet.");
- }
-
-}
-
-class TestComponent extends JComponent {
- private ANTestWindow m_parent;
-
- public TestComponent(ANTestWindow parent) {
- m_parent = parent;
- }
-
- @Override
- protected void paintComponent(Graphics g) {
- m_parent.causeRepaint(g);
- }
-
-}
-
-class TimingThread implements Runnable {
- private JComponent m_parent;
-
- private long m_sum;
- private int m_count;
-
- public TimingThread(JComponent parent) {
- m_parent = parent;
- }
-
- public void run() {
- m_sum = 0;
- m_count = 0;
- try {
- Thread.sleep(5000);
- } catch (Exception e) {}
- for (int i = 0; i < 100; i++) {
- long before = System.nanoTime();
- m_parent.paintImmediately(0, 0, m_parent.getWidth(), m_parent.getHeight());
- long after = System.nanoTime();
- m_sum += after - before;
- m_count++;
- }
- System.out.println("Mean time: " + m_sum/m_count + "ns");
- }
-}
\ No newline at end of file
diff --git a/graphics/AtlantisJava/src/atlantis/nge/object/ANObject.java b/graphics/AtlantisJava/src/atlantis/nge/object/ANObject.java
deleted file mode 100644
index 944c3c461b9..00000000000
--- a/graphics/AtlantisJava/src/atlantis/nge/object/ANObject.java
+++ /dev/null
@@ -1,27 +0,0 @@
-package atlantis.nge.object;
-
-import atlantis.nge.*;
-
-/**
- * An ANObject is the superclass of anything which knows how to draw itself
- * using an ANRenderer
- *
- * Specifically these will tend to represent some kind of visual onscreen
- * element and will contain all the information required to draw the
- * representation
- *
- * @author Adam Davison
- */
-public abstract class ANObject {
-
- public abstract void render(ANRenderer r, ANRenderHints hint);
-
- private ANPickHandler m_ph = null;
- protected void setPickHandler(ANPickHandler ph) {
- m_ph = ph;
- }
-
- public ANPickHandler getPickHandler() {
- return m_ph;
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/nge/object/ANObjectList.java b/graphics/AtlantisJava/src/atlantis/nge/object/ANObjectList.java
deleted file mode 100644
index 7e79f7f10e5..00000000000
--- a/graphics/AtlantisJava/src/atlantis/nge/object/ANObjectList.java
+++ /dev/null
@@ -1,30 +0,0 @@
-package atlantis.nge.object;
-
-import atlantis.nge.ANRenderHints;
-import atlantis.nge.ANRenderer;
-import java.util.ArrayList;
-
-/**
- * A composite object, of course these can be nested to make trees of objects
- *
- * @author Adam Davison
- */
-public class ANObjectList extends ANObject {
-
- private ArrayList<ANObject> m_list;
-
- public ANObjectList() {
- m_list = new ArrayList<ANObject>();
- }
-
- public void addObject(ANObject o) {
- m_list.add(o);
- }
-
- public void render(ANRenderer r, ANRenderHints hint) {
- for (int i = 0; i < m_list.size(); i++) {
- m_list.get(i).render(r, hint);
- }
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/nge/object/ANObjectTestAxes.java b/graphics/AtlantisJava/src/atlantis/nge/object/ANObjectTestAxes.java
deleted file mode 100644
index c32ad4e2fec..00000000000
--- a/graphics/AtlantisJava/src/atlantis/nge/object/ANObjectTestAxes.java
+++ /dev/null
@@ -1,44 +0,0 @@
-package atlantis.nge.object;
-
-import atlantis.nge.*;
-import javax.media.opengl.GL;
-
-/**
- * A simple test object
- *
- * @author Adam Davison, Mark Stockton
- */
-public class ANObjectTestAxes extends ANObject {
-
- public ANObjectTestAxes() {
-
- }
-
- @Override
- public void render(ANRenderer r, ANRenderHints hint) {
-
- r.lineWidth(2.0f);
-
- // x
- r.color3f(1.0f, 0.0f, 0.0f);
- r.begin(GL.GL_LINES);
- r.vertex3f(0.0f, 0.0f, 0.0f);
- r.vertex3f(1500.0f, 0.0f, 0.0f);
- r.end();
-
- // y
- r.color3f(0.0f, 1.0f, 0.0f);
- r.begin(GL.GL_LINES);
- r.vertex3f(0.0f, 0.0f, 0.0f);
- r.vertex3f(0.0f, 1500.0f, 0.0f);
- r.end();
-
- // z
- r.color3f(0.0f, 0.0f, 1.0f);
- r.begin(GL.GL_LINES);
- r.vertex3f(0.0f, 0.0f, 0.0f);
- r.vertex3f(0.0f, 0.0f, 1500.0f);
- r.end();
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/nge/object/ANObjectVL.java b/graphics/AtlantisJava/src/atlantis/nge/object/ANObjectVL.java
deleted file mode 100644
index 091ac5ffb58..00000000000
--- a/graphics/AtlantisJava/src/atlantis/nge/object/ANObjectVL.java
+++ /dev/null
@@ -1,66 +0,0 @@
-package atlantis.nge.object;
-
-import atlantis.nge.*;
-
-/**
- * An object which draws from a vertex list
- *
- * @author Adam Davison
- */
-public abstract class ANObjectVL extends ANObject {
-
- public abstract float[][] getVertices();
-
- public abstract int[] getPrimTypes();
-
- // What the hell is this?
- public final int DRAW_LINE=-9;
-
- public ANColor getColor(int i) {
- return new ANColor(1.0f, 0.0f, 0.0f, 1.0f);
- }
-
- /**
- * This function is like the software equivalent of just dumping a block
- * of vertex information in GL 3.1...
- * @param r
- * @param hint
- */
- @Override
- public void render(ANRenderer r, ANRenderHints hint) {
- r.lineWidth(1.5f);
-
- int pid = -1;
- ANPickHelper ph = null;
- if (hint.getPick()) {
- ph = hint.getPickHelper();
- pid = ph.getIndex(this);
- }
-
- int[] pt = getPrimTypes();
- float[][] v = getVertices();
-
- if (pt == null) {
- return;
- }
-
- for (int i = 0; i < pt.length; i++) {
- if (hint.getPick()) {
- ph.startPick(pid, i);
- }
-
- ANColor c = getColor(i);
- r.color4f(c.r, c.g, c.b, c.a);
- r.begin(pt[i]);
- for (int j = 0; j < v[i].length; j+=3) {
- r.vertex3f(v[i][j], v[i][j+1], v[i][j+2]);
- }
- r.end();
-
- if (hint.getPick()) {
- ph.endPick();
- }
- }
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/nge/object/data/ANObjectDataCell.java b/graphics/AtlantisJava/src/atlantis/nge/object/data/ANObjectDataCell.java
deleted file mode 100644
index 410ea527370..00000000000
--- a/graphics/AtlantisJava/src/atlantis/nge/object/data/ANObjectDataCell.java
+++ /dev/null
@@ -1,170 +0,0 @@
-package atlantis.nge.object.data;
-
-import atlantis.nge.object.*;
-import atlantis.nge.*;
-import atlantis.data.ACalorimeterData;
-import atlantis.geometry.AEndcapCalorimeterDetector;
-import atlantis.utils.AMath;
-
-import javax.media.opengl.GL;
-
-/**
- * Object that draws cells
- *
- * @author Adam Davison, Mark Stockton
- */
-public class ANObjectDataCell extends ANObjectVL {
-
- private float[][] m_v;
- private int[] m_pt;
- private int[] m_color;
-
- public ANObjectDataCell() {
- }
-
- public ANObjectDataCell(ACalorimeterData ald) {
-
- m_pt = new int[ald.getNumDraw()];
- m_v = new float[ald.getNumDraw()][];
- m_color = new int[ald.getNumDraw()];
-
- for (int j = 0; j < ald.getNumDraw(); j++) {
- int i = ald.getDrawIndex(j);
-
- m_pt[j] = GL.GL_TRIANGLE_STRIP;
- m_color[j] = ald.getColor(i);
- m_v[j] = getVert(ald, i);
-
- }
- }
-
- public ANObjectDataCell(ACalorimeterData ald, int dl[]) {
-
- m_pt = new int[dl.length];
- m_v = new float[dl.length][];
- m_color = new int[dl.length];
-
- for (int j = 0; j < dl.length; j++) {
- int i = dl[j];
-
- m_pt[j] = GL.GL_TRIANGLE_STRIP;
- m_color[j] = ald.getColor(i);
- m_v[j] = getVert(ald, i);
-
- }
- }
-
- // This logic should be in ANObjectGenerator
- public ANObjectDataCell(ACalorimeterData ald, float phi, float eta, float dr) {
-
- int num = 0;
- for (int j = 0; j < ald.getNumDraw(); j++) {
- int i = ald.getDrawIndex(j);
- if (AMath.deltaR(phi, eta, (float) ald.getPhi(i), (float) ald.getEta(i)) < dr) {
- num++;
- }
- }
-
- m_pt = new int[num];
- m_v = new float[num][];
- m_color = new int[num];
- num = 0;
- for (int j = 0; j < ald.getNumDraw(); j++) {
- int i = ald.getDrawIndex(j);
- if (AMath.deltaR(phi, eta, (float) ald.getPhi(i), (float) ald.getEta(i)) > dr) {
- continue;
- }
- m_pt[num] = GL.GL_TRIANGLE_STRIP;
- m_color[num] = ald.getColor(i);
- m_v[num] = getVert(ald, i);
- num++;
-
- }
- }
-
- private float[] getVert(ACalorimeterData ald, int index) {
-
- float etamin = (float) (ald.getEta(index) - ald.getdEta(index));
- float etamax = (float) (ald.getEta(index) + ald.getdEta(index));
-
- float thetamin = (float) (2.0f * Math.atan(Math.exp(-etamin)));
- float thetamax = (float) (2.0f * Math.atan(Math.exp(-etamax)));
-
- float phimin = (float) (ald.getPhi(index) - ald.getdPhi(index));
- float phimax = (float) (ald.getPhi(index) + ald.getdPhi(index));
-
- float rmin = (float) ald.getDetector(index).getRMin();
- float rmax = (float) ald.getDetector(index).getRMax();
-
- // TODO: Push this up to the getZ??? functions in this detector
- // class.
- if (ald.getDetector(index) instanceof AEndcapCalorimeterDetector) {
- //correction taken from AEndcapCalorimeterDetector
- String name = ald.getDetector(index).getName();
- float zmin = (float) (ald.getDetector(index).getZMin());
- //This shouldn't be 0, but just to be on the safe side.
- int side = ald.getSide(index);
- if (side != 0) {
- side /= Math.abs(side);
- }
- zmin *= side;
- if (name.indexOf("Inner") >= 0 || name.indexOf("Outer") >= 0 || name.indexOf("Presampler") >= 0) {
- rmax = (float) (zmin / Math.sinh(etamin));
- }
- rmin = (float) (zmin / Math.sinh(etamax));
- }
-
- float[][] v = new float[8][3];
-
- fillVert(v[0], rmin, thetamin, phimin);
- fillVert(v[1], rmin, thetamax, phimin);
- fillVert(v[2], rmax, thetamax, phimin);
- fillVert(v[3], rmax, thetamin, phimin);
- fillVert(v[4], rmin, thetamin, phimax);
- fillVert(v[5], rmin, thetamax, phimax);
- fillVert(v[6], rmax, thetamax, phimax);
- fillVert(v[7], rmax, thetamin, phimax);
-
- float[] vert = new float[3 * 14];
- int[] wind = {6, 5, 7, 4, 0, 5, 1, 2, 0, 3, 7, 2, 6, 5};
- for (int i = 0; i < 14; i++) {
- copyVert(v[wind[i]], vert, i);
- }
-
- return vert;
- }
-
- private void copyVert(float[] v, float[] t, int ti) {
- t[(ti * 3) + 0] = v[0];
- t[(ti * 3) + 1] = v[1];
- t[(ti * 3) + 2] = v[2];
-
- }
-
- private void fillVert(float[] v, float r, float theta, float phi) {
-
- v[0] = (float) (r * Math.cos(phi));
- v[1] = (float) (r * Math.sin(phi));
- v[2] = (float) (r / Math.tan(theta));
- }
-
- @Override
- public float[][] getVertices() {
- return m_v;
- }
-
- @Override
- public int[] getPrimTypes() {
- return m_pt;
- }
-
- @Override
- public ANColor getColor(int i) {
-
- if (m_color[i] == DRAW_LINE) {
- return new ANColor(0.0f, 0.0f, 0.0f, 1.0f);
- } else {
- return ANColor.getMapColor(m_color[i]);
- }
- }
-}
\ No newline at end of file
diff --git a/graphics/AtlantisJava/src/atlantis/nge/object/data/ANObjectDataJet.java b/graphics/AtlantisJava/src/atlantis/nge/object/data/ANObjectDataJet.java
deleted file mode 100644
index f97774fe95f..00000000000
--- a/graphics/AtlantisJava/src/atlantis/nge/object/data/ANObjectDataJet.java
+++ /dev/null
@@ -1,146 +0,0 @@
-package atlantis.nge.object.data;
-
-import atlantis.nge.object.*;
-import atlantis.nge.*;
-import atlantis.data.AJetData;
-import atlantis.utils.AMath;
-
-import javax.media.opengl.GL;
-
-/**
- * Object that draws geometry of the muon system
- *
- * @author Adam Davison, Mark Stockton
- */
-public class ANObjectDataJet extends ANObjectVL {
-
- private float[][] m_v;
- private int[] m_pt;
- private int[] m_color;
-
- public ANObjectDataJet() {
-
- }
-
-public ANObjectDataJet(AJetData ajd) {
-
-
- m_pt = new int[2*ajd.getNumDraw()];
- m_v = new float[2*ajd.getNumDraw()][];
- m_color = new int[2*ajd.getNumDraw()];
-
- for (int j = 0; j < ajd.getNumDraw(); j++) {
- int i= ajd.getDrawIndex(j);
- float theta = (float) (2.0f * Math.atan(Math.exp(-ajd.getEta(i))));
-
- m_pt[2*j] = GL.GL_TRIANGLE_FAN;
- //m_v[2*j] = getCone(ajd.getET(i), ajd.getPhi(i), theta);
- m_v[2*j] = getCone(1300.0f, ajd.getPhi(i), theta);
- m_color[2*j]=ajd.getColor(i);
- m_pt[2*j+1] = GL.GL_LINES;
- //m_v[2*i+1] = getCore(ajd.getET(i), ajd.getPhi(i), theta);
- m_v[2*j+1] = getCore(1300.0f, ajd.getPhi(i), theta);
- m_color[2*j+1]=DRAW_LINE;
- }
- }
-
- public ANObjectDataJet(AJetData ajd, float phi, float eta, float dr) {
-
- int num=0;
- for (int j = 0; j < ajd.getNumDraw(); j++) {
- int i= ajd.getDrawIndex(j);
- if(AMath.deltaR(phi,eta,(float)ajd.getPhi(i),(float)ajd.getEta(i))<dr){
- num++;
- }
- }
-
- m_pt = new int[2*num];
- m_v = new float[2*num][];
- m_color = new int[2*num];
- num=0;
- for (int j = 0; j < ajd.getNumDraw(); j++) {
- int i= ajd.getDrawIndex(j);
- if(AMath.deltaR(phi,eta,(float)ajd.getPhi(i),(float)ajd.getEta(i))>dr)
- continue;
- float theta = (float) (2.0f * Math.atan(Math.exp(-ajd.getEta(i))));
-
- m_pt[2*num] = GL.GL_TRIANGLE_FAN;
- //m_v[2*num] = getCone(ajd.getET(i), ajd.getPhi(i), theta);
- m_v[2*num] = getCone(1300.0f, ajd.getPhi(i), theta);
- m_color[2*num]=ajd.getColor(i);
- m_pt[2*num+1] = GL.GL_LINES;
- //m_v[2*num+1] = getCore(ajd.getET(i), ajd.getPhi(i), theta);
- m_v[2*num+1] = getCore(1300.0f, ajd.getPhi(i), theta);
- m_color[2*num+1]=DRAW_LINE;
- num++;
- }
- }
-
-
-
- private float[] getCore(float len, float phi, float theta){
-
- // Jets are in detector eta so primary vertex set to 0 is sensible for now
- float[] core = {0.0f, 0.0f, 0.0f,
- (float) (len * Math.cos(phi) * Math.sin(theta)),
- (float) (len * Math.sin(phi) * Math.sin(theta)),
- (float) (len * Math.cos(theta))
- };
- return core;
- }
-
- private float[] getCone(float len, float phi, float theta){
- int segs = 8;
-
- float[] cone = new float[3 * (2 + segs)];
- cone[0] = 0.0f;
- cone[1] = 0.0f;
- cone[2] = 0.0f;
-
- //temporary jet radius
- float jetr = 100.0f;
-
- for (int i = 0; i < segs; i++) {
- float lphi = (float) (i * 2.0f * Math.PI / segs);
- float ax = (float) (jetr * Math.cos(lphi));
- float ay = (float) (jetr * Math.sin(lphi));
- float az = len;
-
- float bx = (float) (ax * Math.cos(phi) * Math.cos(theta) +
- az * Math.sin(theta) * Math.cos(phi) - ay * Math.sin(phi));
- float by = (float) (ax * Math.cos(theta) * Math.sin(phi) +
- az * Math.sin(theta) * Math.sin(phi) + ay * Math.cos(phi));
- float bz = (float) (-ax * Math.sin(theta) + az * Math.cos(theta));
-
- cone[i*3+3] = bx;
- cone[i*3+4] = by;
- cone[i*3+5] = bz;
- }
-
- cone[(3*(2+segs)) - 3] = cone[3];
- cone[(3*(2+segs)) - 2] = cone[4];
- cone[(3*(2+segs)) - 1] = cone[5];
-
- return cone;
- }
-
- @Override
- public float[][] getVertices() {
- return m_v;
- }
-
- @Override
- public int[] getPrimTypes() {
- return m_pt;
- }
-
- @Override
- public ANColor getColor(int i) {
-
- if(m_color[i]==DRAW_LINE)
- return new ANColor(0.0f, 0.0f, 0.0f, 1.0f);
- else
- return ANColor.getMapColor(m_color[i], 0.5f);
-
- }
-}
\ No newline at end of file
diff --git a/graphics/AtlantisJava/src/atlantis/nge/object/data/ANObjectPointing.java b/graphics/AtlantisJava/src/atlantis/nge/object/data/ANObjectPointing.java
deleted file mode 100644
index 2fddcee1d37..00000000000
--- a/graphics/AtlantisJava/src/atlantis/nge/object/data/ANObjectPointing.java
+++ /dev/null
@@ -1,147 +0,0 @@
-package atlantis.nge.object.data;
-
-import atlantis.data.ACalorimeterData;
-import atlantis.data.ATILEData;
-import atlantis.geometry.AEndcapCalorimeterDetector;
-import atlantis.nge.ANColor;
-import atlantis.nge.object.ANObjectVL;
-import atlantis.utils.AMath;
-import javax.media.opengl.GL;
-
-/**
- *
- * @author Adam Davison
- */
-public class ANObjectPointing extends ANObjectVL {
-
- private float[][] m_v;
- private int[] m_pt;
- private ANColor[] m_c;
-
- public ANObjectPointing(ACalorimeterData ald, int dl[], int dllen, boolean outline) {
- m_pt = new int[dllen];
- m_v = new float[dllen][];
- m_c = new ANColor[dllen];
-
- double[] area = new double[dl.length];
- for (int i = 0; i < dllen; i++) {
- area[i] = 1.0;
- }
-
- ald.calibrateLocalDensity(dl, area);
- double[] scale = ald.getScaleFactors(dl, area);
-
- if (outline) {
- for (int j = 0; j < dllen; j++) {
- int i = dl[j];
- m_pt[j] = GL.GL_LINES;
- m_c[j] = ANColor.getMapColor(ald.getColor(i));
- m_c[j].mult(0.5f);
- m_v[j] = getVert(ald, i, (float)scale[j], true);
- //m_v[j] = getVert(ald, i, 1.0f, true);
- }
- } else {
-
- for (int j = 0; j < dllen; j++) {
- int i = dl[j];
- m_pt[j] = GL.GL_TRIANGLE_STRIP;
- m_c[j] = ANColor.getMapColor(ald.getColor(i));
- m_v[j] = getVert(ald, i, (float)scale[j], false);
- }
- }
-
- }
-
- @Override
- public float[][] getVertices() {
- return m_v;
- }
-
- @Override
- public int[] getPrimTypes() {
- return m_pt;
- }
-
- @Override
- public ANColor getColor(int i) {
- return m_c[i];
- }
-
- private float[] getVert(ACalorimeterData ald, int index, float scale, boolean outline) {
-
- // Possibly should apply scale to theta not eta?
- float etamin = (float) (ald.getEta(index) - 0.5f*scale*ald.getdEta(index));
- float etamax = (float) (ald.getEta(index) + 0.5f*scale*ald.getdEta(index));
-
- float thetamin = (float) (2.0f * Math.atan(Math.exp(-etamin)));
- float thetamax = (float) (2.0f * Math.atan(Math.exp(-etamax)));
-
- float phimin = (float) (ald.getPhi(index) - 0.5f*scale*ald.getdPhi(index));
- float phimax = (float) (ald.getPhi(index) + 0.5f*scale*ald.getdPhi(index));
-
- float rmin = (float) ald.getDetector(index).getRMin();
- float rmax = (float) ald.getDetector(index).getRMax();
- float dr = 0.5f*(rmax - rmin);
- rmin += (1.0f - scale)*dr;
- rmax -= (1.0f - scale)*dr;
-
- // TODO: Push this up to the getZ??? functions in this detector
- // class.
- if (ald.getDetector(index) instanceof AEndcapCalorimeterDetector) {
- //correction taken from AEndcapCalorimeterDetector
- String name = ald.getDetector(index).getName();
- float zmin = (float) (ald.getDetector(index).getZMin());
- //This shouldn't be 0, but just to be on the safe side.
- int side = ald.getSide(index);
- if (side != 0) {
- side /= Math.abs(side);
- }
- zmin *= side;
- if (name.indexOf("Inner") >= 0 || name.indexOf("Outer") >= 0 || name.indexOf("Presampler") >= 0) {
- rmax = (float) (zmin / Math.sinh(etamin));
- }
- rmin = (float) (zmin / Math.sinh(etamax));
- }
-
- float[][] v = new float[8][3];
-
- fillVert(v[0], rmin, thetamin, phimin);
- fillVert(v[1], rmin, thetamax, phimin);
- fillVert(v[2], rmax, thetamax, phimin);
- fillVert(v[3], rmax, thetamin, phimin);
- fillVert(v[4], rmin, thetamin, phimax);
- fillVert(v[5], rmin, thetamax, phimax);
- fillVert(v[6], rmax, thetamax, phimax);
- fillVert(v[7], rmax, thetamin, phimax);
-
- int[] wind = null;
- if (!outline) {
- int[] inwind = {6, 5, 7, 4, 0, 5, 1, 2, 0, 3, 7, 2, 6, 5};
- wind = inwind;
- } else {
- int[] outwind = {0, 3, 0, 1, 0, 4, 2, 1, 2, 3, 2, 6,
- 7, 4, 7, 6, 7, 3, 5, 6, 5, 4, 5, 1};
- wind = outwind;
- }
- float[] vert = new float[3 * wind.length];
- for (int i = 0; i < wind.length; i++) {
- copyVert(v[wind[i]], vert, i);
- }
-
- return vert;
- }
-
- private void copyVert(float[] v, float[] t, int ti) {
- t[(ti * 3) + 0] = v[0];
- t[(ti * 3) + 1] = v[1];
- t[(ti * 3) + 2] = v[2];
-
- }
-
- private void fillVert(float[] v, float r, float theta, float phi) {
-
- v[0] = (float) (r * Math.cos(phi));
- v[1] = (float) (r * Math.sin(phi));
- v[2] = (float) (r / Math.tan(theta));
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/nge/object/data/ANObjectTracks.java b/graphics/AtlantisJava/src/atlantis/nge/object/data/ANObjectTracks.java
deleted file mode 100644
index f8599c1f12a..00000000000
--- a/graphics/AtlantisJava/src/atlantis/nge/object/data/ANObjectTracks.java
+++ /dev/null
@@ -1,82 +0,0 @@
-package atlantis.nge.object.data;
-
-import atlantis.data.ALArData;
-import atlantis.data.ATrackData;
-import atlantis.nge.ANColor;
-import atlantis.nge.object.ANObjectVL;
-import javax.media.opengl.GL;
-
-/**
- *
- * @author Adam Davison
- */
-public class ANObjectTracks extends ANObjectVL {
-
- private float[][] m_v;
- private int[] m_pt;
- private int[] m_color;
-
- public ANObjectTracks(ATrackData td) {
- float[][] x = td.getX();
- float[][] y = td.getY();
- float[][] z = td.getZ();
-
- m_pt = new int[x.length];
- m_v = new float[x.length][];
- m_color = new int[x.length];
-
- for (int i = 0; i < x.length; i++) {
- m_pt[i] = GL.GL_LINE_STRIP;
- m_v[i] = new float[x[i].length * 3];
- m_color[i] = td.getColor(i);
- for (int p = 0; p < x[i].length; p++) {
- m_v[i][p * 3] = x[i][p];
- m_v[i][p * 3 + 1] = y[i][p];
- m_v[i][p * 3 + 2] = z[i][p];
- }
- }
- }
-
- public ANObjectTracks(ATrackData td, int[] dl) {
- float[][] x = td.getX();
- if (x == null) {
- System.out.println("ARGH!!");
- m_pt = null;
- m_v = null;
- m_color = null;
- return;
- }
- float[][] y = td.getY();
- float[][] z = td.getZ();
-
- m_pt = new int[dl.length];
- m_v = new float[dl.length][];
- m_color = new int[dl.length];
-
- for (int i = 0; i < dl.length; i++) {
- m_pt[i] = GL.GL_LINE_STRIP;
- int index = td.getIndexFromId(dl[i]);
- m_v[i] = new float[x[index].length * 3];
- m_color[i] = td.getColor(index);
- for (int p = 0; p < x[index].length; p++) {
- m_v[i][p * 3] = x[index][p];
- m_v[i][p * 3 + 1] = y[index][p];
- m_v[i][p * 3 + 2] = z[index][p];
- }
- }
- }
-
- @Override
- public float[][] getVertices() {
- return m_v;
- }
-
- @Override
- public int[] getPrimTypes() {
- return m_pt;
- }
-
- public ANColor getColor(int i) {
- return ANColor.getMapColor(m_color[i]);
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/nge/object/geometry/ANObjectBeamLine.java b/graphics/AtlantisJava/src/atlantis/nge/object/geometry/ANObjectBeamLine.java
deleted file mode 100644
index ad9d7da77b4..00000000000
--- a/graphics/AtlantisJava/src/atlantis/nge/object/geometry/ANObjectBeamLine.java
+++ /dev/null
@@ -1,21 +0,0 @@
-package atlantis.nge.object.geometry;
-
-import atlantis.nge.object.ANObjectVL;
-
-/**
- *
- * @author Adam Davison
- */
-public class ANObjectBeamLine extends ANObjectVL {
-
- @Override
- public float[][] getVertices() {
- throw new UnsupportedOperationException("Not supported yet.");
- }
-
- @Override
- public int[] getPrimTypes() {
- throw new UnsupportedOperationException("Not supported yet.");
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/nge/object/geometry/ANObjectGeomCalo.java b/graphics/AtlantisJava/src/atlantis/nge/object/geometry/ANObjectGeomCalo.java
deleted file mode 100644
index 5705182ecc6..00000000000
--- a/graphics/AtlantisJava/src/atlantis/nge/object/geometry/ANObjectGeomCalo.java
+++ /dev/null
@@ -1,159 +0,0 @@
-package atlantis.nge.object.geometry;
-
-import atlantis.nge.object.*;
-import atlantis.nge.*;
-import atlantis.geometry.ACalorimeterDetector;
-
-import java.util.ArrayList;
-import javax.media.opengl.GL;
-
-/**
- * Object that draws geometry of the muon system
- *
- * @author Adam Davison, Mark Stockton
- */
-public class ANObjectGeomCalo extends ANObjectVL {
-
- private float[][] m_v;
- private int[] m_pt;
-
- private int[] m_color;
-
- public ANObjectGeomCalo(ArrayList<ACalorimeterDetector> m_calo, int nv_scale, boolean duplicate) {
-
- m_pt = new int[7*m_calo.size()];
- m_v = new float[7*m_calo.size()][];
- m_color = new int[7*m_calo.size()];
-
- //all endcaps and extended tile only has one end in geom file and not relicated like others
- for (int j = 0; j < m_calo.size(); j++) {
- int i=7*j;
- ACalorimeterDetector cd = m_calo.get(j);
- m_pt[i]=GL.GL_TRIANGLE_STRIP;
- m_pt[i+1]=GL.GL_TRIANGLE_STRIP;
- m_pt[i+2]=GL.GL_TRIANGLE_STRIP;
- m_pt[i+3]=GL.GL_LINE_LOOP;
- m_pt[i+4]=GL.GL_LINE_LOOP;
- m_pt[i+5]=GL.GL_LINE_LOOP;
- m_pt[i+6]=GL.GL_LINE_LOOP;
- m_color[i]=cd.getFillColor();
- m_color[i+1]=cd.getFillColor();
- m_color[i+2]=cd.getFillColor();
- m_color[i+3]=DRAW_LINE;
- m_color[i+4]=DRAW_LINE;
- m_color[i+5]=DRAW_LINE;
- m_color[i+6]=DRAW_LINE;
-
- float zMin=(float) cd.getZMin();
- float zMax=(float) cd.getZMax();
- if(duplicate){
- zMin*=-1.;
- zMax*=-1.;
- }
- m_v[i] = getEndTris(zMin, (float) cd.getRMin(), (float) cd.getRMax(), cd.getNumPhi() / nv_scale);
- m_v[i+1] = getEndTris(zMax, (float) cd.getRMin(), (float) cd.getRMax(), cd.getNumPhi() / nv_scale);
- m_v[i+2] = getBarrelTris(zMin, zMax, (float) cd.getRMin(), (float) cd.getRMax(), cd.getNumPhi() / nv_scale);
- m_v[i+3] = getEdges(zMin, (float) cd.getRMin(), cd.getNumPhi() / nv_scale, true);
- m_v[i+4] = getEdges(zMax, (float) cd.getRMin(), cd.getNumPhi() / nv_scale, true);
- m_v[i+5] = getEdges(zMin, (float) cd.getRMax(), cd.getNumPhi() / nv_scale, false);
- m_v[i+6] = getEdges(zMax, (float) cd.getRMax(), cd.getNumPhi() / nv_scale, false);
- }
- }
-
-
- private float[] getEdges(float z, float r, int nv, boolean inner) {
- float[] v = new float[3 * nv];
-
- float dphi = (2 * (float) Math.PI) / nv;
- float hdphi = 0.5f * dphi;
- //if (inner) { hdphi = 0.0f; }
-
- for (int i = 0; i < nv; i++) {
- int ie = i * 3;
- v[ie] = r * (float) Math.cos(i * dphi + hdphi);
- v[ie + 1] = r * (float) Math.sin(i * dphi + hdphi);
- v[ie + 2] = (float) z;
- }
-
- return v;
- }
-
- private float[] getBarrelTris(float zmin, float zmax, float rmin, float rmax, int nv) {
- float[] v = new float[3 * (nv * 2 + 2)];
-
- float dphi = (2 * (float) Math.PI) / nv;
- float hdphi = 0.5f * dphi;
-
- float r = (float) rmax;
-
- for (int i = 0; i < nv; i++) {
- int ie = i * 2 * 3;
- int oe = (i * 2 + 1) * 3;
- v[ie] = r * (float) Math.cos(i * dphi + hdphi);
- v[ie + 1] = r * (float) Math.sin(i * dphi + hdphi);
- v[ie + 2] = (float) zmin;
- v[oe] = r * (float) Math.cos(i * dphi + hdphi);
- v[oe + 1] = r * (float) Math.sin(i * dphi + hdphi);
- v[oe + 2] = (float) zmax;
- }
-
- // Close the strip
- for (int i = 0; i < 6; i++) {
- v[i + v.length - 6] = v[i];
- }
-
- return v;
- }
-
- private float[] getEndTris(float z, float rmin, float rmax, int nv) {
- float[] v = new float[3 * (nv * 2 + 2)];
-
- float dphi = (2 * (float) Math.PI) / nv;
- float hdphi = 0.5f * dphi;
-
- for (int i = 0; i < nv; i++) {
- int ie = i * 2 * 3;
- int oe = (i * 2 + 1) * 3;
- v[ie] = (float) rmin * (float) Math.cos(i * dphi);
- v[ie + 1] = (float) rmin * (float) Math.sin(i * dphi);
- v[ie + 2] = z;
- v[oe] = (float) rmax * (float) Math.cos(i * dphi + hdphi);
- v[oe + 1] = (float) rmax * (float) Math.sin(i * dphi + hdphi);
- v[oe + 2] = z;
- }
-
- // Close the strip
- for (int i = 0; i < 6; i++) {
- v[i + v.length - 6] = v[i];
- }
-
- return v;
- }
-
-
-
- public ANObjectGeomCalo() {
-
- }
-
- @Override
- public int[] getPrimTypes()
- {
- return m_pt;
- }
-
- @Override
- public float[][] getVertices()
- {
- return m_v;
- }
-
- @Override
- public ANColor getColor(int i) {
-
- if(m_color[i]==DRAW_LINE)
- return new ANColor(0.0f, 0.0f, 0.0f, 1.0f);
- else
- return ANColor.getMapColor(m_color[i], 1.0f);
- }
-}
\ No newline at end of file
diff --git a/graphics/AtlantisJava/src/atlantis/nge/object/geometry/ANObjectGeomMuon.java b/graphics/AtlantisJava/src/atlantis/nge/object/geometry/ANObjectGeomMuon.java
deleted file mode 100644
index dd115cb360a..00000000000
--- a/graphics/AtlantisJava/src/atlantis/nge/object/geometry/ANObjectGeomMuon.java
+++ /dev/null
@@ -1,229 +0,0 @@
-package atlantis.nge.object.geometry;
-
-import atlantis.nge.object.*;
-import atlantis.nge.*;
-import atlantis.geometry.ABoxDetector;
-import java.util.ArrayList;
-import javax.media.opengl.GL;
-
-/**
- * Object that draws geometry of the muon system
- *
- * @author Adam Davison, Mark Stockton
- */
-public class ANObjectGeomMuon extends ANObjectVL {
-
- private float[][] m_v;
- private int[] m_pt;
- private int[] m_color;
-
- public ANObjectGeomMuon() {
- setPickHandler(new ANPickHandlerSimple("Muon Spectrometer"));
- }
-
- public ANObjectGeomMuon(ArrayList<ABoxDetector> m_boxes) {
- setPickHandler(new ANPickHandlerSimple("Muon Spectrometer"));
-
- m_pt = new int[2*m_boxes.size()];
- m_v = new float[2*m_boxes.size()][];
- m_color = new int[2*m_boxes.size()];
-
- for (int i = 0; i < m_boxes.size(); i++) {
- ABoxDetector b = m_boxes.get(i);
- m_pt[2*i] = GL.GL_TRIANGLE_STRIP;
- m_v[2*i] = getBoxFaces((float)b.getZMin(), (float)b.getZMax(),
- (float)b.getRMin(), (float)b.getRMax(), (float)b.getPhi(),
- (float)b.getSize());
- m_color[2*i]=b.getFillColor();
- m_pt[2*i+1] = GL.GL_LINES;
- m_v[2*i+1] = getBoxEdges((float)b.getZMin(), (float)b.getZMax(),
- (float)b.getRMin(), (float)b.getRMax(), (float)b.getPhi(),
- (float)b.getSize());
- m_color[2*i+1]=DRAW_LINE;
- }
- }
-
- // This code answers the question, how do you wrap a strip of 14 triangles
- // to form a cube?
- private float[] getBoxFaces(float zmin, float zmax, float rmin, float rmax, float phi, float w) {
- float[] v = new float[3*14];
-
- float sinPhi = (float)Math.sin(phi);
- float cosPhi = (float)Math.cos(phi);
-
- float xmi = rmin*cosPhi;
- float ymi = rmin*sinPhi;
- float xmo = rmax*cosPhi;
- float ymo = rmax*sinPhi;
- float dx = -sinPhi*w/2.0f;
- float dy = cosPhi*w/2.0f;
-
- v[0] = xmi + dx;
- v[1] = ymi + dy;
- v[2] = zmax;
-
- v[3] = xmi - dx;
- v[4] = ymi - dy;
- v[5] = zmax;
-
- v[6] = xmo + dx;
- v[7] = ymo + dy;
- v[8] = zmax;
-
- v[9] = xmo - dx;
- v[10] = ymo - dy;
- v[11] = zmax;
-
- v[12] = v[9];
- v[13] = v[10];
- v[14] = zmin;
-
- v[15] = v[3];
- v[16] = v[4];
- v[17] = v[5];
-
- v[18] = v[3];
- v[19] = v[4];
- v[20] = zmin;
-
- v[21] = v[0];
- v[22] = v[1];
- v[23] = zmin;
-
- v[24] = v[12];
- v[25] = v[13];
- v[26] = v[14];
-
- v[27] = v[6];
- v[28] = v[7];
- v[29] = zmin;
-
- v[30] = v[6];
- v[31] = v[7];
- v[32] = v[8];
-
- v[33] = v[21];
- v[34] = v[22];
- v[35] = v[23];
-
- v[36] = v[0];
- v[37] = v[1];
- v[38] = v[2];
-
- v[39] = v[3];
- v[40] = v[4];
- v[41] = v[5];
-
- return v;
- }
-
- private float[] getBoxEdges(float zmin, float zmax, float rmin, float rmax, float phi, float w) {
- float[] v = new float[3*12*2]; // 3d*12edges*2ends
-
- float sinPhi = (float)Math.sin(phi);
- float cosPhi = (float)Math.cos(phi);
-
- float xmi = rmin*cosPhi;
- float ymi = rmin*sinPhi;
- float xmo = rmax*cosPhi;
- float ymo = rmax*sinPhi;
- float dx = -sinPhi*w/2.0f;
- float dy = cosPhi*w/2.0f;
-
- v[0] = xmi + dx;
- v[1] = ymi + dy;
- v[2] = zmin;
-
- v[3] = xmi - dx;
- v[4] = ymi - dy;
- v[5] = zmin;
-
- v[6] = v[3];
- v[7] = v[4];
- v[8] = v[5];
-
- v[9] = xmo - dx;
- v[10] = ymo - dy;
- v[11] = zmin;
-
- v[12] = v[9];
- v[13] = v[10];
- v[14] = v[11];
-
- v[15] = xmo + dx;
- v[16] = ymo + dy;
- v[17] = zmin;
-
- v[18] = v[15];
- v[19] = v[16];
- v[20] = v[17];
-
- v[21] = v[0];
- v[22] = v[1];
- v[23] = v[2];
-
- for (int i = 24; i < 48; i++) {
- if (i % 3 == 2) {
- v[i] = zmax;
- } else {
- v[i] = v[i - 24];
- }
-
- }
-
- v[48] = v[0];
- v[49] = v[1];
- v[50] = v[2];
-
- v[51] = v[0];
- v[52] = v[1];
- v[53] = zmax;
-
- v[54] = v[3];
- v[55] = v[4];
- v[56] = v[5];
-
- v[57] = v[3];
- v[58] = v[4];
- v[59] = zmax;
-
- v[60] = v[9];
- v[61] = v[10];
- v[62] = v[11];
-
- v[63] = v[9];
- v[64] = v[10];
- v[65] = zmax;
-
- v[66] = v[15];
- v[67] = v[16];
- v[68] = v[17];
-
- v[69] = v[15];
- v[70] = v[16];
- v[71] = zmax;
-
- return v;
- }
-
- @Override
- public float[][] getVertices() {
- return m_v;
- }
-
- @Override
- public int[] getPrimTypes() {
- return m_pt;
- }
-
- @Override
- public ANColor getColor(int i) {
-
- if(m_color[i]==DRAW_LINE)
- return new ANColor(0.0f, 0.0f, 0.0f, 1.0f);
- else
- return ANColor.getMapColor(m_color[i], 1.0f);
-
- }
-
-}
\ No newline at end of file
diff --git a/graphics/AtlantisJava/src/atlantis/output/AExceptionHandler.java b/graphics/AtlantisJava/src/atlantis/output/AExceptionHandler.java
deleted file mode 100755
index 7be2501d9e7..00000000000
--- a/graphics/AtlantisJava/src/atlantis/output/AExceptionHandler.java
+++ /dev/null
@@ -1,61 +0,0 @@
-package atlantis.output;
-
-import javax.swing.JOptionPane;
-
-import atlantis.globals.AGlobals;
-
-/**
- * Handles an exception thrown in the AWT event-dispatch thread. If the system
- * property "sun.awt.exception.handler" is defined then when an exception occurs
- * in the AWT event-dispatch thread, the thread wii do the following: 1) Load
- * the class named by the value of that property, using the current thread's
- * context class loader, 2) Instantiate that class using its zero-argument
- * constructor, 3) Find the resulting handler object's "public void handle"
- * method, which should take a single argument of type "Throwable", and 4)
- * Invoke the handler's "handle" method, passing it the exception as an
- * argument.
- *
- * Note: The magic "sun.awt.exception.handler" property will be
- * removed in a future release.
- *
- * Comment: No wonder - centrally handling all exceptions is not a good idea
- * in the first place (S.B.)
- */
-
-public class AExceptionHandler {
- private static final AGlobals globals = AGlobals.instance();
-
- public void handle(Throwable exception)
- {
- processException("AWT Event Dispatch Thread Exception:", exception);
- }
-
- public static void processException(String message, Throwable exception)
- {
- exception.printStackTrace();
- showMessageDialog(message);
- }
-
- public static void processException(String type, String message)
- {
-
- if (type.equals("fatal")){
- showMessageDialog(type + ": " + message + "\n");
- System.exit(1);
- }
- AOutput.append(type + ": " + message + "\n", ALogInterface.BAD_COMMAND);
- }
-
- private static void showMessageDialog(String message)
- {
- //Do not show messages in headless mode
- if(AGlobals.isAtlantisHeadless()) return;
-
- //Do not show messages in demo mode
- if (AGlobals.instance().isDemoMode()) return;
-
- //Else show a message box with the exception
- JOptionPane.showMessageDialog(globals.getGuiFrame(), message, "Atlantis", JOptionPane.ERROR_MESSAGE);
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/output/ALogInterface.java b/graphics/AtlantisJava/src/atlantis/output/ALogInterface.java
deleted file mode 100644
index 3a3f416a71f..00000000000
--- a/graphics/AtlantisJava/src/atlantis/output/ALogInterface.java
+++ /dev/null
@@ -1,25 +0,0 @@
-package atlantis.output;
-
-/**
- * Non-GUI-dependent interface for ALogPane.
- *
- * @author waugh
- *
- */
-public interface ALogInterface {
-
- public static final String TITLE = "TITLE";
- public static final String NORMAL = "NORMAL";
- public static final String NORMAL_BOLD = "NORMAL_BOLD";
- public static final String COMMAND = "COMMAND";
- public static final String BAD_COMMAND = "BAD_COMMAND";
- public static final String PICK = "PICK";
- public static final String WARNING = "WARNING";
-
- void append(String s);
-
- void append(String s, String style);
-
- void clear();
-
-}
\ No newline at end of file
diff --git a/graphics/AtlantisJava/src/atlantis/output/AOutput.java b/graphics/AtlantisJava/src/atlantis/output/AOutput.java
deleted file mode 100755
index 4f5285cb5a5..00000000000
--- a/graphics/AtlantisJava/src/atlantis/output/AOutput.java
+++ /dev/null
@@ -1,54 +0,0 @@
-package atlantis.output;
-
-import atlantis.globals.AGlobals;
-import atlantis.utils.ALogger;
-
-/**
- * AOutput provides access to the specific static instance of AMainLogPane which
- * is used for displaying general information within Atlantis
- * @author Adam Davison
- */
-public class AOutput
-{
- //Handle to the main log pane
- private static ALogInterface outputPane;
-
- /** Logger for when not outputting to the GUI (Minerva). */
- private final static ALogger logger = ALogger.getLogger(AOutput.class);
-
- /** Append text to output pane/logger depending on output level. */
- public static void append(String s, String style) {
- if (outputPane==null) return; // in case not set yet, or no GUI
- if(AGlobals.instance().getSimpleOutput()>0){
- if (style.equals(ALogInterface.BAD_COMMAND) || style.equals(ALogInterface.WARNING)) {
- logger.warn(s);
- }else{
- logger.info(s);
- }
- }else{
- outputPane.append(s, style);
- }
- }
-
- /** Append text to output pane - only for pick info (and select event/debug info). */
- public static void alwaysAppend(String s, String style) {
- if (outputPane==null) return; // in case not set yet, or no GUI
- outputPane.append(s, style);
- }
-
- /**
- * Provide interface to the log pane in the GUI.
- * @param outputDisplay the log pane
- */
- public static void setOutput(ALogInterface outputDisplay) {
- AOutput.outputPane = outputDisplay;
- }
-
- /**
- * Get interface to the log pane in the GUI, if any.
- * @param outputDisplay the log pane
- */
- public static ALogInterface getOutput() {
- return outputPane;
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/package.html b/graphics/AtlantisJava/src/atlantis/package.html
deleted file mode 100644
index 9d160b36ad3..00000000000
--- a/graphics/AtlantisJava/src/atlantis/package.html
+++ /dev/null
@@ -1,8 +0,0 @@
-<html>
-<head></head>
-<body>
- Root package of the Atlantis application.
- Contains main class Atlantis, whose purpose is to parse the command line,
- initialise the application's main components and provide access to them.
-</body>
-</html>
diff --git a/graphics/AtlantisJava/src/atlantis/parameters/AAbstractParameter.java b/graphics/AtlantisJava/src/atlantis/parameters/AAbstractParameter.java
deleted file mode 100755
index 74401090c6e..00000000000
--- a/graphics/AtlantisJava/src/atlantis/parameters/AAbstractParameter.java
+++ /dev/null
@@ -1,913 +0,0 @@
-package atlantis.parameters;
-
-import java.awt.Color;
-import java.awt.event.ActionEvent;
-import java.awt.event.ActionListener;
-import java.awt.event.MouseAdapter;
-import java.awt.event.MouseEvent;
-import java.util.ArrayList;
-import java.util.List;
-import java.util.StringTokenizer;
-
-import javax.swing.JComponent;
-import javax.swing.JLabel;
-import javax.swing.JPopupMenu;
-import javax.swing.LookAndFeel;
-
-import atlantis.canvas.ACanvas;
-import atlantis.canvas.AWindow;
-import atlantis.gui.ACheckBox;
-import atlantis.gui.AParametersTable;
-import atlantis.output.AExceptionHandler;
-import atlantis.utils.AUtilities;
-
-/**
- * The class is used as a default implementation of the AParameter interface.
- * All parameters extend this class except ALinkParameter which implements
- * AParameter directly.
- */
-abstract class AAbstractParameter implements AParameter
-{
- // range constants
- protected final static int MIN = 0;
- protected final static int MAX = 1;
- protected final static int SVAL = 2;
-
- // unitsOf constants
- protected final static int NOTHING = 0;
- protected final static int LENGTH = 1;
- protected final static int ENERGY = 2;
- protected final static int ENERGYMEV = 3;
-
- /**
- * List of listeners/observers to be informed of changes to parameters.
- * Currently this is just the GUI, which repaints its tables when a parameter
- * changes.
- */
- private List<AParameterChangeListener> parameterChangeListeners = new ArrayList<AParameterChangeListener>();
-
- /** The internal name of the parameter. */
- protected String name;
- /** The name which is displayed in the user interface. */
- protected String screenName;
- /** Tool tip, i.e. text that appears when mouse hovers over control. */
- protected String toolTip;
-
- protected boolean hasStatus;
- protected int valueType;
- protected int scope;
- protected int defaultScope;
- protected boolean isModulus;
- protected int userLevel;
- protected int unitsOf;
- protected String[] operators;
- /** Allowed values for this parameter:
- * range[MIN][i] and range[MAX][i] are the limits of the i'th range;
- * range[SVAL][j] is the j'th allowed single value. */
- protected double[][] range;
-
- private ACheckBox nameLabel;
- private JLabel label;
- private boolean isInitialized = false;
-
- /** The number of windows in the canvas. */
- protected int wCount = 0; // initialised later in constructor
-
- /** Contains the values for each window. */
- protected AParameterData data;
-
- @Override
- public void addParameterChangeListener(AParameterChangeListener listener) {
- parameterChangeListeners.add(listener);
- }
-
- public AAbstractParameter(String name, String screenName, String toolTip,
- int valueType, double value, String op, String dop,
- boolean haseStatus, boolean status, boolean isMod, int userLevel,
- int scope, int unitsOf)
- {
- // initialising wCount
- // for running without Canvas (e.g. calling geometry methods from GraXML),
- // this may run without Canvas initialised
- // check if Canvas actually exists
- // dependency of AAbstractParameter on ACanvas should be revised, this
- // current solution is not very elegant
- ACanvas canvas = ACanvas.getCanvas();
- this.wCount = canvas == null ? 0 : canvas.getWindowsCount();
-
- this.isModulus = isMod;
- this.unitsOf = unitsOf;
-
- if (!screenName.trim().equals(""))
- this.screenName = screenName;
- else
- this.screenName = name;
-
- if (isMod)
- this.screenName = "|" + this.screenName + "|";
-
- // removing spaces from the parameter name
- StringBuffer strBuffer = new StringBuffer(name);
- int i = 0;
-
- while (i < strBuffer.length())
- {
- if (Character.isWhitespace(strBuffer.charAt(i)))
- strBuffer.deleteCharAt(i);
- else
- i++;
- }
- this.name = strBuffer.toString();
-
- if ((toolTip == null) || (toolTip.trim().length() == 0))
- this.toolTip = this.screenName;
- else
- this.toolTip = toolTip;
-
- this.hasStatus = haseStatus;
- this.valueType = valueType;
-
- // set up the local window copies
- this.data = new AParameterData(wCount);
-
- for (i = 0; i < wCount; i++)
- {
- this.data.setValue(i, value);
- this.data.setStatus(i, status);
- }
-
- // decompose supportedOperators
- if ((op == null) || (op.trim().equals("")))
- {
- this.operators = new String[1];
- operators[0] = "=";
- }
- else
- {
- String[] tempOperators = new String[10];
-
- int operatorsCount = 0;
- StringTokenizer st = new StringTokenizer(op, ",");
-
- while (st.hasMoreTokens())
- {
- String oper = st.nextToken().trim();
-
- if (isKnownOperator(oper))
- {
- tempOperators[operatorsCount] = oper;
- operatorsCount++;
- }
- else
- throw new Error("Unknown operator: " + oper);
- }
-
- this.operators = new String[operatorsCount];
- for (i = 0; i < operatorsCount; i++)
- this.operators[i] = tempOperators[i];
- }
-
- if ((dop == null) || (dop.trim().equals("")))
- for (i = 0; i < wCount; i++)
- this.data.setOperator(i, operators[0]);
- else
- for (i = 0; i < wCount; i++)
- this.data.setOperator(i, dop);
-
- this.userLevel = userLevel;
- setScope(scope);
- saveDefaults();
- }
-
- public void saveDefaults()
- {
- this.data.saveDefaults();
- this.defaultScope = this.scope;
- }
-
- public void restoreDefaults()
- {
- this.data.restoreDefaults();
- changeScope(this.defaultScope);
- }
-
- /**
- * This method is called to apply the change in the value of the parameter
- */
- public void apply()
- {
- if (getScope() == LOCAL)
- ACommandProcessor.receive("DO");
- else
- ACanvas.getCanvas().repaintAllFromScratch();
- }
-
- /**
- * Called by the User Interface in order to initialize the graphics of the
- * parameter (if it will be displayed in the UI).
- */
- public void initialize()
- {
- if (hasStatus)
- {
- nameLabel = new ACheckBox(screenName);
- nameLabel.setSelected(getStatus());
- nameLabel.setBackground(new Color(204, 204, 204));
- if (getScope() == LOCAL)
- setForeground(Color.black);
- else
- setForeground(Color.blue);
-
- nameLabel.setToolTipText(toolTip);
- nameLabel.addActionListener(new ActionListener()
- {
- public void actionPerformed(ActionEvent e)
- {
- ACommandProcessor.receive(name);
- apply();
- }
- });
-
- // after the first left click at the table in the parameter tabbed
- // pane, all the followingmouse mouse event will be catched by the
- // mouselisteners of those components inside the table cells, not
- // the table itself, so in order for the local/global
- // switch (right click to change) to always work, have to add mouse
- // listeners to these components as well.
- nameLabel.addMouseListener(new MouseAdapter()
- {
- public void mousePressed(MouseEvent e)
- {
- if (AUtilities.isRightMouseButton(e))
- {
- JPopupMenu popupMenu = new JPopupMenu();
- if (getScope() == AParameter.LOCAL)
- {
- popupMenu.add(AParametersTable.SET_GLOBAL).addActionListener(new ActionListener()
- {
- public void actionPerformed(ActionEvent e)
- {
- changeScope(AParameter.GLOBAL);
- refresh();
- }
- });
- }
- else
- {
- popupMenu.add(AParametersTable.SET_LOCAL).addActionListener(new ActionListener()
- {
- public void actionPerformed(ActionEvent e)
- {
- changeScope(AParameter.LOCAL);
- refresh();
- }
- });
- }
- popupMenu.show(nameLabel, e.getX(), e.getY());
- }
- }
- });
- }
- else
- {
- label = new JLabel(screenName);
- if (getScope() == LOCAL)
- setForeground(Color.black);
- else
- setForeground(Color.blue);
-
- // after the first left click at the table in the parameter tabbed
- // pane, all the followingmouse mouse event will be catched by the
- // mouselisteners of those components inside the table cells, not
- // the table itself, so in order for the local/global
- // switch (right click to change) to always work, have to add mouse
- // listeners to these components as well.
- label.addMouseListener(new MouseAdapter()
- {
- public void mousePressed(MouseEvent e)
- {
- if (AUtilities.isRightMouseButton(e))
- {
- JPopupMenu popupMenu = new JPopupMenu();
- if (getScope() == AParameter.LOCAL)
- {
- popupMenu.add(AParametersTable.SET_GLOBAL).addActionListener(new ActionListener()
- {
- public void actionPerformed(ActionEvent e)
- {
- changeScope(AParameter.GLOBAL);
- refresh();
- }
- });
- }
- else
- {
- popupMenu.add(AParametersTable.SET_LOCAL).addActionListener(new ActionListener()
- {
- public void actionPerformed(ActionEvent e)
- {
- changeScope(AParameter.LOCAL);
- refresh();
- }
- });
- }
- popupMenu.show(label, e.getX(), e.getY());
- }
- }
- });
- label.setOpaque(true);
- label.setToolTipText(toolTip);
- LookAndFeel.installColorsAndFont(label, "CheckBox.background", "CheckBox.foreground", "CheckBox.font");
- }
-
- isInitialized = true;
- }
-
- public boolean isInitialized()
- {
- return this.isInitialized;
- }
-
- /**
- * Copies from one window to another the value of the parameter
- */
- public void copy(int from, int to)
- {
- data.copy(from,to);
- }
-
- /**
- * This function is called for GLOBAL parameters to apply the value in all
- * windows.
- */
- public void globalize(int window)
- {
- data.globalize(window);
- }
-
- public void setScope(int scope)
- {
- this.scope = scope;
- if (scope == LOCAL)
- setForeground(Color.black);
- else
- setForeground(Color.blue);
- }
-
- public void changeScope(int scope)
- {
- if (scope != this.scope)
- {
- this.scope = scope;
- if (scope == LOCAL)
- setForeground(Color.black);
- else
- {
- setForeground(Color.blue);
- data.globalize();
- ACanvas.getCanvas().repaintAllFromScratch();
- }
- }
- }
-
- public int getScope()
- {
- return scope;
- }
-
- public String getName()
- {
- return name;
- }
-
- public String getScreenName()
- {
- return screenName;
- }
-
- public String getToolTip()
- {
- return toolTip;
- }
-
- // public String getOperator() { return operator; }
- public boolean isModulus()
- {
- return isModulus;
- }
-
- public int getValueType()
- {
- return valueType;
- }
-
- public String getOperator()
- {
- return data.getOperator();
- }
-
- protected void _setOperator(String oper)
- {
- // if (!validateValue(v))
- // throw new Error("Value " + v + " for parameter " + screenName + " is
- // out of range ");
- data.setOperator(oper);
- if (scope == GLOBAL) data.globalize();
- }
-
- protected void _setOperator(String windowName, String oper)
- {
- if (scope == GLOBAL || windowName.equals("*")) {
- data.setOperator(oper);
- data.globalize();
- } else {
- data.setOperator(ACanvas.getCanvas().getWindow(windowName).getIndex(), oper);
- }
- }
-
- protected void _setValue(String windowName, double val)
- {
- if (scope == GLOBAL || windowName.equals("*")) {
- data.setValue(val);
- data.globalize();
- } else {
- data.setValue(ACanvas.getCanvas().getWindow(windowName).getIndex(), val);
- }
- }
-
- protected void _setStatus(String windowName, boolean stat)
- {
- if (scope == GLOBAL || windowName.equals("*")) {
- data.setStatus(stat);
- data.globalize();
- } else {
- data.setStatus(ACanvas.getCanvas().getWindow(windowName).getIndex(), stat);
- }
- }
-
- /**
- * _setD and _setI are used by subclasses when changing the values of
- * parameters.
- */
- protected void _setD(double v)
- {
- if (!validateValue(v))
- throw new Error("Value " + v + " for parameter " + screenName + " is out of range ");
- data.setValue(v);
- if (scope == GLOBAL) data.globalize();
- }
-
- protected void _setI(int v)
- {
- if (!validateValue(v))
- throw new Error("Value " + v + " for parameter " + screenName + " is out of range ");
- data.setValue(v);
- if (scope == GLOBAL) data.globalize();
- }
-
- public double getD()
- {
- if (valueType != FLOAT)
- throw new Error("getD acces on not FLOAT parameter");
- return data.getValue();
- }
-
- public int getI()
- {
- if (valueType != INT)
- throw new Error("getI acces on not INT parameter");
- return (int) data.getValue();
- }
-
- public String getValue()
- {
- if (valueType == FLOAT)
- return Double.toString(data.getValue());
- else
- return Integer.toString((int) data.getValue());
- }
-
- public void setStatus(boolean st)
- {
- if (!hasStatus)
- throw new Error("Parameter has no status");
- data.setStatus(st);
- if (scope == GLOBAL) data.globalize();
-
- refresh();
- fireParameterChanged();
- }
-
- public boolean getStatus()
- {
- if (!hasStatus)
- throw new Error("Parameter hase no status");
-
- return data.getStatus();
- }
-
- public JComponent getNameComponent()
- {
- if (hasStatus)
- return nameLabel;
- else
- return label;
- }
-
- public JComponent getValueComponent()
- {
- return new JLabel("error");
- }
-
- protected void _refresh()
- {
- if (hasStatus)
- if (nameLabel != null)
- nameLabel.setSelected(getStatus());
- }
-
- /**
- * Parses the PossibleValues string and returns the double[][] containing
- * the range of this parameter.
- */
- protected static double[][] resolvePossibleValues(String possibleValues, int type)
- {
- double[][] range = new double[3][100];
- int valCount = 0;
- int rangeCount = 0;
- StringTokenizer st = new StringTokenizer(possibleValues, ",");
- String sval;
- double val = 0;
-
- while (st.hasMoreTokens())
- {
- String token = st.nextToken().trim();
- StringTokenizer st1 = new StringTokenizer(token, ":");
-
- switch (st1.countTokens())
- {
- case 1:
- sval = st1.nextToken().trim();
- try
- {
- if (type == FLOAT)
- val = Double.parseDouble(sval);
- else if (type == INT)
- val = Integer.parseInt(sval);
- range[SVAL][valCount] = val;
- valCount++;
- }
- catch (NumberFormatException nfe)
- {
- AExceptionHandler.processException("Corrupt Possible Value: " + sval, nfe);
- }
- break;
-
- case 2:
- for (int i = 0; i < 2; i++)
- {
- sval = st1.nextToken().trim();
- try
- {
- if (type == FLOAT)
- val = Double.parseDouble(sval);
- else if (type == INT)
- val = Integer.parseInt(sval);
- }
- catch (NumberFormatException nfe)
- {
- if (sval.equals("inf"))
- val = Double.POSITIVE_INFINITY;
- else if (sval.equals("-inf"))
- val = Double.NEGATIVE_INFINITY;
- else
- AExceptionHandler.processException("Corrupt Possible Range: (" + token + ")", nfe);
- }
- range[i][rangeCount] = val;
- }
- rangeCount++;
- break;
-
- default:
- AExceptionHandler.processException("fatal", "Corrupt \"pv\" definition: \"" + possibleValues + "\"");
- break;
- }
- }
-
- double[] min = new double[rangeCount];
- double[] max = new double[rangeCount];
-
- for (int i = 0; i < rangeCount; i++)
- if (range[MIN][i] <= range[MAX][i])
- {
- min[i] = range[MIN][i];
- max[i] = range[MAX][i];
- }
- else
- throw new Error("Bad range definiton: (" + range[0][i] + ":" + range[1][i] + ")");
-
- double[] v = new double[valCount];
-
- for (int i = 0; i < valCount; i++)
- v[i] = range[SVAL][i];
-
- range[MIN] = min;
- range[MAX] = max;
- range[SVAL] = v;
- return range;
- }
-
- protected static int[] getValues(String possibleValues)
- {
- int[] pVal = new int[100];
- int[] range = new int[2];
- int i, valCount = 0;
- String token;
- StringTokenizer st, st1;
-
- st = new StringTokenizer(possibleValues, ",");
- while (st.hasMoreTokens())
- {
- token = st.nextToken().trim();
- st1 = new StringTokenizer(token, ":");
- switch (st1.countTokens())
- {
- case 1:
- try
- {
- pVal[valCount++] = Integer.parseInt(st1.nextToken().trim());
- }
- catch (NumberFormatException nfe)
- {
- AExceptionHandler.processException("Corrupt Possible Value", nfe);
- }
- break;
-
- case 2:
- for (i = 0; i < 2; i++)
- try
- {
- range[i] = Integer.parseInt(st1.nextToken().trim());
- }
- catch (NumberFormatException nfe)
- {
- AExceptionHandler.processException("fatal", "error in range definition");
- }
-
- if (range[0] <= range[1])
- for (i = range[0]; i <= range[1]; i++)
- pVal[valCount++] = i;
- break;
-
- default:
- AExceptionHandler.processException("fatal", "Corrupt range definition: \"" + possibleValues + "\"");
- }
- }
-
- int[] pValFinal = new int[valCount];
-
- for (i = 0; i < valCount; i++)
- pValFinal[i] = pVal[i];
-
- return pValFinal;
- }
-
- public boolean processCommand(String oper, double v)
- {
- // first I validate the operator and the value
- if (!validateOperator(oper))
- return false;
- if (!validateValue(v))
- return false;
-
- if (valueType == FLOAT)
- _setD(v);
- else
- _setI((int) v);
-
- _setOperator(oper);
-
- refresh();
- fireParameterChanged();
-
- return true;
- }
-
- public boolean validateValue(double v)
- {
- if (range[SVAL] != null)
- for (int i = 0; i < range[SVAL].length; i++)
- if (v == range[SVAL][i])
- return true;
-
- if (range[MIN] != null)
- for (int i = 0; i < range[MIN].length; i++)
- if ((v >= range[MIN][i]) && (v <= range[MAX][i]))
- return true;
-
- return false;
- }
-
- public boolean validateOperator(String oper)
- {
- for (int i = 0; i < operators.length; i++)
- if (oper.equals(operators[i]))
- return true;
-
- return false;
- }
-
- public int getUserLevel()
- {
- return userLevel;
- }
-
-
- public String toString()
- {
- StringBuilder s = new StringBuilder(screenName + ": ");
-
- if (scope == GLOBAL)
- s.append("GLOBAL");
- else if (scope == LOCAL)
- s.append("LOCAL");
-
- s.append("[");
-
- // for running without Canvas (e.g. calling geometry methods from GraXML),
- // this may run without Canvas initialised
- // check if Canvas actually exists
- // dependency of AAbstractParameter on ACanvas should be revised, this
- // current solution is not very elegant
- ACanvas canvas = ACanvas.getCanvas();
- String[] wName = canvas == null ? new String[0] : canvas.getKnownWindowNames();
-
- for (int i = 0; i < wName.length; i++)
- {
- AWindow w = ACanvas.getCanvas().getWindow(wName[i]);
-
- s.append(wName[i] + ": " + data.getValue(w.getIndex()) + ": ");
- }
-
- return s.toString() + "]" + " :" + toolTip + ":";
- }
-
-
- private final void setForeground(Color color)
- {
- if (getNameComponent() != null)
- getNameComponent().setForeground(color);
- }
-
- public String getDifferences(String groupName)
- {
- StringBuffer b = new StringBuffer();
- String[] windowNames = ACanvas.getCanvas().getKnownWindowNames();
- int[] inverse = new int[windowNames.length];
- for (int i = 0; i < windowNames.length; i++)
- inverse[ACanvas.getCanvas().getWindow(windowNames[i]).getIndex()] = i;
-
- for (int i = 0; i < wCount; ++i)
- {
- if (data.getStatus() != data.getStatus(i) || !data.getOperator().equals(data.getOperator(i)) || data.getValue() != data.getValue(i))
- {
-
- b.append("\t\t<DIFFERENCE group=\"" + groupName + "\" name=\"" + getName() + "\" windowName=\"" + windowNames[inverse[i]] + "\"");
-
- if (data.getValue() != data.getValue(i))
- b.append(" va=\"" + data.getValue(i) + "\"");
- if (data.getStatus() != data.getStatus(i))
- {
- if (data.getStatus(i))
- b.append(" st=\"ON\"");
- else
- b.append(" st=\"OFF\"");
- }
- if (!data.getOperator().equals(data.getOperator(i)))
- b.append(" op=\"" + data.getOperator(i) + "\"");
- b.append("/>\n");
- }
- }
- return b.toString();
- }
-
- protected double parseUnitsDouble(String text)
- {
- // units shown are cm
- if (unitsOf == LENGTH)
- {
- if (text.endsWith("MM") || text.endsWith("mm"))
- return 0.1 * Double.parseDouble(text.substring(0, text.length() - 2));
- if (text.endsWith("CM") || text.endsWith("cm"))
- return Double.parseDouble(text.substring(0, text.length() - 2));
- if (text.endsWith("UM") || text.endsWith("um"))
- return 0.0001 * Double.parseDouble(text.substring(0, text.length() - 2));
- else if (text.endsWith("M") || text.endsWith("m"))
- return 100. * Double.parseDouble(text.substring(0, text.length() - 1));
- else
- return Double.parseDouble(text.substring(0, text.length()));
- }
- else if (unitsOf == ENERGY)
- {
- if (text.endsWith("GeV") || text.endsWith("gev") || text.endsWith("GEV"))
- return Double.parseDouble(text.substring(0, text.length() - 3));
- else if (text.endsWith("MeV") || text.endsWith("mev") || text.endsWith("MEV"))
- return .001 * Double.parseDouble(text.substring(0, text.length() - 3));
- else
- return Double.parseDouble(text);
- }
- else if (unitsOf == ENERGYMEV)
- {
- if (text.endsWith("MeV") || text.endsWith("mev") || text.endsWith("MEV"))
- return Double.parseDouble(text.substring(0, text.length() - 3));
- else if (text.endsWith("KeV") || text.endsWith("kev") || text.endsWith("KEV"))
- return .001 * Double.parseDouble(text.substring(0, text.length() - 3));
- else if (text.endsWith(" eV") || text.endsWith(" ev") || text.endsWith(" EV"))
- return .000001 * Double.parseDouble(text.substring(0, text.length() - 3));
- else
- return Double.parseDouble(text);
- }
- else
- {
- return Double.parseDouble(text);
- }
- }
-
- protected String parseUnits(double d)
- {
- // units shown are cm
- double abs = Math.abs(d);
- if (unitsOf == LENGTH)
- {
- if (abs >= 100.)
- return "" + trim(d, 100.) + " m";
- else if (abs >= 1.)
- return "" + trim(d, 1.) + " cm";
- else if (abs >= 0.1)
- return "" + trim(d, 0.1) + " mm";
- else
- return "" + trim(d, 0.0001) + " um";
- }
- else if (unitsOf == ENERGY)
- {
- if (abs >= 1.)
- return "" + trim(d, 1.) + " GeV";
- else
- return "" + trim(d, 0.001) + " MeV";
- }
- else if (unitsOf == ENERGYMEV)
- {
- if (abs >= 1.)
- return "" + trim(d, 1.) + " MeV";
- else if(abs >=0.001)
- return "" + trim(d, 0.001) + " KeV";
- else
- return "" + trim(d, 0.000001) + " eV";
- }
- else
- {
- return "" + trim(d, 1.);
- }
- }
-
- private String trim(double d, double factor)
- {
- // only display with 3 significant digits
- if (unitsOf == LENGTH && Math.abs(d) < .1)
- return "" + Math.rint(d / factor);
- else if (unitsOf == ENERGY && Math.abs(d) < 1.)
- return "" + Math.rint(d / factor);
- else if (unitsOf == ENERGYMEV && Math.abs(d) < 1.)
- return "" + Math.rint(d / factor);
- else
- return "" + Math.rint(1000. * d / factor) / 1000.;
- }
-
- public ACheckBox getCheckBox()
- {
- return this.nameLabel;
- }
-
- /**
- * Check if a given operator is one of the allowed supportedOperators.
- * @param oper the operator to check
- * @return true if this is a known operator
- */
- protected static boolean isKnownOperator(String oper)
- {
- for(int i=0; i<AParameter.supportedOperators.length; i++)
- if(oper.equals(AParameter.supportedOperators[i]))
- return true;
-
- return false;
- }
-
- /**
- * Tell the listeners that a parameter has changed.
- */
- protected void fireParameterChanged() {
- for (AParameterChangeListener listener : parameterChangeListeners) {
- listener.parameterChanged(this);
- }
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/parameters/AColorParameter.java b/graphics/AtlantisJava/src/atlantis/parameters/AColorParameter.java
deleted file mode 100755
index 34972e6e189..00000000000
--- a/graphics/AtlantisJava/src/atlantis/parameters/AColorParameter.java
+++ /dev/null
@@ -1,92 +0,0 @@
-package atlantis.parameters;
-
-import java.awt.event.ItemEvent;
-import java.awt.event.ItemListener;
-import javax.swing.JComponent;
-
-import atlantis.gui.AColorComboBoxRenderer;
-import atlantis.gui.AComboBox;
-
-/**
- * A parameter representing a selectable colour.
- */
-public class AColorParameter extends AAbstractParameter {
- private AComboBox colorComboBox;
-
- public AColorParameter(
- String name, String screenName, String toolTip, String pv, double value,
- boolean haseStatus, boolean status, int userLevel, int scope) {
-
- super(name, screenName, toolTip, INT, value, null, null, haseStatus, status, false, userLevel,
- scope, NOTHING);
-
- range=resolvePossibleValues(pv, INT);
- if((range[SVAL]==null)&&(range[MIN]==null)) {
- range[MIN]=new double[] {0};
- range[MAX]=new double[] {29};
- }
-
- }
-
- public void setD(double v) {
- throw new IllegalArgumentException("is not allowed to use setD on ColorParameter");
- }
-
- public void setI(int v) {
- if(colorComboBox!=null)
- colorComboBox.setGUISelectedItem(new Integer(v));
-
- _setI(v);
- refresh();
- fireParameterChanged();
- }
-
- public void initialize() {
- super.initialize();
- colorComboBox=new AComboBox();
- colorComboBox.setRenderer(new AColorComboBoxRenderer());
- colorComboBox.setToolTipText(toolTip);
-
- int i, j;
-
- for(i=0; i<range[SVAL].length; i++) {
- int color=(int)range[SVAL][i];
-
- if((color>=0)&&(color<=29))
- colorComboBox.addItem(new Integer(color));
- }
-
- for(i=0; i<range[MIN].length; i++) {
- int color1=(int)range[MIN][i];
- int color2=(int)range[MAX][i];
-
- if((color1>=0)&&(color1<=29)&&(color2>=0)&&(color2<=29))
- for(j=color1; j<=color2; j++)
- colorComboBox.addItem(new Integer(j));
- }
-
- colorComboBox.setGUIItemListener(new ItemListener() {
- public void itemStateChanged(ItemEvent e) {
- if(e.getStateChange()==ItemEvent.SELECTED) {
- int color=((Integer)colorComboBox.getSelectedItem()).intValue();
-
- ACommandProcessor.receive(name+"="+color);
- apply();
- }
- }
- });
-
- colorComboBox.setGUISelectedItem(new Integer(getI()));
- }
-
- public JComponent getValueComponent() {
- return colorComboBox;
- }
-
- public void refresh() {
- _refresh();
- if(colorComboBox!=null)
- colorComboBox.setGUISelectedItem(new Integer(getI()));
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/parameters/ACommand.java b/graphics/AtlantisJava/src/atlantis/parameters/ACommand.java
deleted file mode 100755
index 1ae57ad8ffc..00000000000
--- a/graphics/AtlantisJava/src/atlantis/parameters/ACommand.java
+++ /dev/null
@@ -1,31 +0,0 @@
-package atlantis.parameters;
-
-import java.awt.event.ActionEvent;
-import java.awt.event.ActionListener;
-import javax.swing.JButton;
-
-/**
- * This class is a GUI representation of a command button.
- * It just generates the corresponding command when pressed.
- */
-public class ACommand extends JButton {
- private String command;
-
- ACommand(String name, String _command, String toolTip) {
- super(name);
-
- this.command=_command;
-
- setToolTipText(toolTip);
- addActionListener(new ActionListener() {
- public void actionPerformed(ActionEvent e) {
- ACommandProcessor.receive(command);
- }
- });
- }
-
- public String getName() {
- return getText();
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/parameters/ACommandProcessor.java b/graphics/AtlantisJava/src/atlantis/parameters/ACommandProcessor.java
deleted file mode 100755
index 9c023708c66..00000000000
--- a/graphics/AtlantisJava/src/atlantis/parameters/ACommandProcessor.java
+++ /dev/null
@@ -1,451 +0,0 @@
-package atlantis.parameters;
-
-import java.util.Vector;
-
-import atlantis.canvas.ACanvas;
-import atlantis.canvas.AWindow;
-import atlantis.event.AEventManager;
-import atlantis.event.AFilter;
-import atlantis.data.AS3DData;
-import atlantis.data.ATrackData;
-import atlantis.output.ALogInterface;
-import atlantis.output.AOutput;
-import atlantis.projection.AProjection;
-import atlantis.utils.ALogger;
-
-/**
- * (almost?) All actions on the GUI generate a command (which is basically a
- * text string) which is passed to the command processor which performs the
- * actions associated with that command. This should allow a simple
- * implementation of scripting and logging
- *
- * NOTE: This design has been dramatically neglected in the past and should
- * probably be revised (Sebastian Boeser, 06.10.09)
- */
-
-public class ACommandProcessor
-{
- private static ALogger logger = ALogger.getLogger(ACommandProcessor.class);
- private static AEventManager eventManager = AEventManager.instance();
-
- private static String legoLayoutName ="";
- private static String[] legoWindowNames = {"current", "W", "1", "2", "3", "4"};
- private final static String[] legoStatusParameterNames = {"DrawPlot", "MainLegend", "L1EtLegend", "L1Items", "L2Items", "EFItems"};
- private final static String[] legoIntParameterNames = {"Mode", "nphicells", "netacells"};
- private final static String[] legoCaloParameterNames = {"LAr", "TILE", "FCAL", "MBTS"};
- private static boolean[][] legoStatusParameter = new boolean[6][6];
- private static int[][] legoIntParameter = new int[6][3];
- private static boolean[][] legoCaloParameter = new boolean[2][4];
-
- private static APar parameterStore = APar.instance();
-
- /**
- * While this is called receive, it is actually just a small wrapper to
- * processes a command and at the same time log it
- * @param command the command to process
- */
- public synchronized static void receive(String command)
- {
- //In debug mode show the command
- logger.debug("ACommandProcessor.receive(): " + command);
- //In trace mode show also who called this
- logger.trace("Calling hierarchy",new Exception());
-
- //Now process the command
- boolean status = process(command);
-
- //And log the result
- logger.debug( ((status)?" success: ":" bad command:") + command);
-
- }
-
-
-
- private synchronized static boolean process(String c)
- {
-
- if (processGlobal(c))
- {
- return true;
- }
-
- AProjection p = ACanvas.getCanvas().getCurrentWindow().getProjection();
- // projection dependent command could be processed here
- if (p.processLocalCommand(c))
- {
- return true;
- }
-
- if (parameterStore.processParameterChangeCommand(c))
- {
- return true;
- }
-
- return false;
- }
-
- // used for checking all command are implemented
- private synchronized static boolean found(int mode, String name, String command)
- {
- if (mode != 0)
- {
- logger.warn("Command not found: " + command);
- return false;
- }
- if (name.equals(command))
- return true;
- return false;
- }
-
- private synchronized static boolean foundWindow(int mode, String name, String command)
- {
- if (mode != 0)
- {
- String[] windowNames = ACanvas.getCanvas().getKnownWindowNames();
-
- for (int i = 0; i < windowNames.length; ++i)
- logger.debug(command + windowNames[i]);
- return false;
- }
-
- if (name.substring(0, name.length() - 1).equals(command))
- if (ACanvas.getCanvas().isValidWindowName(name.substring(name.length() - 1)))
- if (ACanvas.getCanvas().getWindow(name.substring(name.length() - 1)) != null)
- return true;
- return false;
- }
-
- private synchronized static boolean processGlobal(String c)
- {
- return processGlobal(c, 0);
- }
-
- private static void getGlobalCommands()
- {
- processGlobal("GARY", 1);
- }
-
- private static boolean processZoomTrack(String name, int mode)
- {
- ATrackData tr = null;
-
- // check if STr (Simulated Track) Zoom Next Track was pressed
- if(found(mode, name, "ZOOMNEXTSTR"))
- {
- tr = eventManager.getCurrentEvent().getSTrData();
- }
- // check if Track (InDetTrack) Zoom Next Track was pressed
- else if(found(mode, name, "ZOOMNEXTTRACK"))
- {
- AEnumeratorParameter listBox = null;
- listBox = (AEnumeratorParameter) parameterStore.get("InDetTrack", "InDetTrackCollections");
- String col = listBox.getCurrentText();
- if("All".equals(col))
- {
- String msg = "Choose a particular Track collection, " +
- "can't zoom next track when 'All' is selected.\n";
- AOutput.alwaysAppend(msg, ALogInterface.WARNING);
- return false;
- }
- else
- {
- tr = eventManager.getCurrentEvent().getTrackData("InDetTrack", col);
- }
- }
-
- if(tr == null)
- {
- // STr or Track of requested collection doesn't exits in this event
- return false;
- }
-
- // check if the datatype where Zoom Next Track was pressed is actually
- // turned on and thus visible
- if(! parameterStore.get("Data", tr.getName()).getStatus())
- {
- AOutput.alwaysAppend("Can't zoom next track, " + tr.getNameScreenName() +
- " is turned off.\n", ALogInterface.WARNING);
- return false;
- }
-
- AParameter nextTrPar = parameterStore.get(tr.getName(), "NextTrack");
- nextTrPar.setStatus(true);
- nextTrPar.setI(nextTrPar.getI() + 1);
- tr.zoomAroundTracks();
- ACanvas.getCanvas().getCurrentWindow().repaintFromScratch();
-
- AOutput.alwaysAppend(tr.getNameScreenName() + " -> Next Track cut active now.\n",
- ALogInterface.WARNING);
-
- return true;
-
- } // processZoomTrack()
- // ---------------------------------------------------
-
- private synchronized static boolean processGlobal(String name, int mode)
- {
- // is this a group in the parameter file ?
- Vector<String> groups = parameterStore.getUIGroupNames();
- for (int i = 0; i < groups.size(); ++i)
- {
- String groupName = groups.elementAt(i);
- if (found(mode, name, groupName + "."))
- {
- ACanvas.getCanvas().getCurrentWindow().setGroup(groupName);
- return true;
- }
- }
-
- if(found(mode, name, "SETORIGINALPRIMARYVERTEX"))
- {
- eventManager.getCurrentEvent().setPrimaryVertex();
- ACanvas.getCanvas().repaintAllFromScratch();
- }
-
-
- if (found(mode, name, "LEGOTRIGGER"))
- {
- processLegoTrigger();
- return true;
- }
-
- if (found(mode, name, "RETURNLEGOTRIGGER"))
- {
- if(legoLayoutName.equals(""))
- {
- AOutput.append("No trigger debugging to return from\n", ALogInterface.NORMAL);
- return true;
- }
-
- returnLegoTrigger();
- return true;
- }
-
- if (found(mode, name, "PREVSECTOR"))
- {
- AParameter phi = parameterStore.get("YZ", "Phi");
- phi.setD(((Math.round(phi.getD()/22.5) + 15) % 16) * 22.5);
- ACanvas.getCanvas().getCurrentWindow().repaintFromScratch();
- return true;
- }
-
- if (found(mode, name, "NEXTSECTOR"))
- {
- AParameter phi = parameterStore.get("YZ", "Phi");
- phi.setD(((Math.round(phi.getD()/22.5) + 1) % 16) * 22.5);
- ACanvas.getCanvas().getCurrentWindow().repaintFromScratch();
- return true;
- }
-
- if (found(mode, name, "ZOOMNEXTSTR") || found(mode, name, "ZOOMNEXTTRACK"))
- {
- return processZoomTrack(name, mode);
- }
-
- if (found(mode, name, "PC"))
- {
- getGlobalCommands();
- return true;
- }
- if (found(mode, name, "DO"))
- {
- ACanvas.getCanvas().getCurrentWindow().repaintFromScratch();
- return true;
- }
-
- // turning all datatypes on/off command: - see code which was
- // commented out in AtlantisJava-09-05-71 and before
-
- // Toggle: PT,D0,Z0,NU off:NG,NB,NS,NR,SH
- if (found(mode, name, "CC"))
- {
- if (parameterStore.get("CutsInDet", "z0-zVtx").getStatus())
- {
- parameterStore.get("CutsInDet", "z0-zVtx").setStatus(false);
- parameterStore.get("CutsInDet", "d0").setStatus(false);
- parameterStore.get("CutsInDet", "Pt").setStatus(false);
- parameterStore.get("CutsInDet", "NumS3D").setStatus(false);
- }
- else
- {
- parameterStore.get("CutsInDet", "z0-zVtx").setStatus(true);
- parameterStore.get("CutsInDet", "d0").setStatus(true);
- parameterStore.get("CutsInDet", "Pt").setStatus(true);
- parameterStore.get("CutsInDet", "NumS3D").setStatus(true);
- }
- parameterStore.get("CutsInDet", "RTrIndex").setStatus(false);
- parameterStore.get("CutsInDet", "STr").setStatus(false);
- parameterStore.get("CutsInDet", "Group").setStatus(false);
- parameterStore.get("CutsATLAS", "Index").setStatus(false);
- ACanvas.getCanvas().getCurrentWindow().repaintFromScratch();
- return true;
- }
- if (found(mode, name, "FH"))
- {
- //Try to get SpacePoints
- AS3DData spacePoints = (AS3DData) eventManager.getCurrentEvent().get("S3D");
- //Apply Hans Drevermanns hit filter
- if (spacePoints != null){
- AFilter.filter(spacePoints);
- ACanvas.getCanvas().getCurrentWindow().repaintFromScratch();
- }
- return true;
- }
- if (foundWindow(mode, name, "W"))
- {
- ACanvas.getCanvas().setCurrentWindow(name.substring(1, 2));
- return true;
- }
- if (foundWindow(mode, name, "C"))
- {
- return true;
- }
- if (foundWindow(mode, name, "Z"))
- {
- return true;
- }
- return false;
- } // processGlobal() ------------------------------------------------------
-
- private synchronized static void processLegoTrigger()
- {
- String currentWindowName = ACanvas.getCanvas().getCurrentWindowName();
- String currentLayoutName = ACanvas.getCanvas().getCurrentLayout().getName();
-
- //save status of windows on first time button pressed
- if(legoLayoutName.equals(""))
- {
- //output message to the user
- AOutput.append("\nWindows changed to:\n",ALogInterface.TITLE);
- AOutput.append("Window 1: LegoPlot with Calo View\n", ALogInterface.NORMAL);
- AOutput.append("Window 2: LegoPlot with Trigger Tower View\n", ALogInterface.NORMAL);
- AOutput.append("Window 3: LegoPlot with Jet Element View\n", ALogInterface.NORMAL);
- AOutput.append("Window 4: LegoPlot Legend (may not be displayed if window too small)\n", ALogInterface.NORMAL);
- //save current window name and layout to then parameters to restore later
- legoWindowNames[0]=currentWindowName;
- legoLayoutName=currentLayoutName;
- for(int i=0; i<legoWindowNames.length; i++)
- {
- parameterStore.selectWindowParameters(legoWindowNames[i]);
- if (ACanvas.getCanvas().getWindow(legoWindowNames[i]) != null)
- {
- //save lego status parameters
- for(int j=0; j<legoStatusParameterNames.length; j++){
- legoStatusParameter[i][j]=parameterStore.get("LegoPlot", legoStatusParameterNames[j]).getStatus();
- }
- //save lego int parameters
- for(int j=0; j<legoIntParameterNames.length; j++){
- legoIntParameter[i][j]=parameterStore.get("LegoPlot", legoIntParameterNames[j]).getI();
- }
- //save data parameters for windows 1 and 4
- if(legoWindowNames[i].equals("1")){
- for(int j=0; j<legoCaloParameterNames.length; j++){
- legoCaloParameter[0][j]=parameterStore.get("Data", legoCaloParameterNames[j]).getStatus();
- }
- }else if(legoWindowNames[i].equals("4")){
- for(int j=0; j<legoCaloParameterNames.length; j++){
- legoCaloParameter[1][j]=parameterStore.get("Data", legoCaloParameterNames[j]).getStatus();
- }
- }
- }
- parameterStore.restoreWindowParameters();
- }
- }
- //copy to W to make sure can switch layout to 4 squares
- ACanvas.getCanvas().copyWindowSettings(currentWindowName, "W");
- if(!currentLayoutName.equals("FOUR SQUARES"))
- ACanvas.getCanvas().setCurrentLayout("FOUR SQUARES");
- //for cell sizing take defaults values and then roughly scaled for different views
- int nphicells = 128;
- int netacells = 200;
- //now copy to each window and set the display correctly
- for (int i = 0; i < 4; i++)
- {
- String wName = Integer.toString(i + 1);
- AWindow w = ACanvas.getCanvas().getWindow(wName);
- parameterStore.selectWindowParameters(wName);
- if (w != null)
- {
- ACanvas.getCanvas().copyWindowSettings("W", wName);
- //first 3 windows show data items (calo, trigger towers, jet elements)
- if(i<3)
- {
- parameterStore.get("LegoPlot", "Mode").setI(i);
- parameterStore.get("LegoPlot", "DrawPlot").setStatus(true);
- parameterStore.get("LegoPlot", "MainLegend").setStatus(false);
- parameterStore.get("LegoPlot", "L1EtLegend").setStatus(false);
- parameterStore.get("LegoPlot", "L1Items").setStatus(false);
- parameterStore.get("LegoPlot", "L2Items").setStatus(false);
- parameterStore.get("LegoPlot", "EFItems").setStatus(false);
- parameterStore.get("LegoPlot", "nphicells").setI(nphicells/((int) Math.pow(2.0, i)));
- parameterStore.get("LegoPlot", "netacells").setI(netacells/((int) Math.pow(2.0, i)));
- }
- else
- {
- //last window shows legend
- parameterStore.get("LegoPlot", "DrawPlot").setStatus(false);
- parameterStore.get("LegoPlot", "MainLegend").setStatus(true);
- parameterStore.get("LegoPlot", "L1EtLegend").setStatus(true);
- parameterStore.get("LegoPlot", "L1Items").setStatus(true);
- parameterStore.get("LegoPlot", "L2Items").setStatus(true);
- parameterStore.get("LegoPlot", "EFItems").setStatus(true);
- }
- //if first or last window it needs the data items turned on
- if(i==0 || i==3)
- {
- for(int j=0; j<legoCaloParameterNames.length; j++){
- parameterStore.get("Data", legoCaloParameterNames[j]).setStatus(true);
- }
- }
- }
- parameterStore.restoreWindowParameters();
- ACanvas.getCanvas().moveToFrontWindow(w.getName());
- w.repaintFromScratch();
-
- }
- }
-
- private synchronized static void returnLegoTrigger()
- {
- //now will reset the parameters explictly set by trigger debug mode
- //others may be changed as on doing trigger debug others might get changed
- //when the current window is copied to W but these have been changed by the
- //user so not so important to reset
-
- //loop backwards so can reset each window before reverting to previous layout
- for(int i=legoWindowNames.length-1; i>=0; i--)
- {
- //reset the lego status parameters
- parameterStore.selectWindowParameters(legoWindowNames[i]);
- for(int j=0; j<legoStatusParameterNames.length; j++){
- parameterStore.get("LegoPlot", legoStatusParameterNames[j]).setStatus(legoStatusParameter[i][j]);
- }
- //reset the lego int parameters
- for(int j=0; j<legoIntParameterNames.length; j++){
- parameterStore.get("LegoPlot", legoIntParameterNames[j]).setI(legoIntParameter[i][j]);
- }
- //reset the data ites for windows 1 and 4
- if(legoWindowNames[i].equals("1")){
- for(int j=0; j<legoCaloParameterNames.length; j++){
- parameterStore.get("Data", legoCaloParameterNames[j]).setStatus(legoCaloParameter[0][j]);
- }
- }else if(legoWindowNames[i].equals("4")){
- for(int j=0; j<legoCaloParameterNames.length; j++){
- parameterStore.get("Data", legoCaloParameterNames[j]).setStatus(legoCaloParameter[1][j]);
- }
- }
- parameterStore.restoreWindowParameters();
- //finished altering window so repaint
- ACanvas.getCanvas().getWindow(legoWindowNames[i]).repaintFromScratch();
- //have just finished W window so now can reset the layout
- if(i==1){
- ACanvas.getCanvas().setCurrentLayout(legoLayoutName);
- legoLayoutName="";
- }
- }
- //everything reset now make the original window where trigger debug
- //was started the current window
- ACanvas.getCanvas().setCurrentWindow(legoWindowNames[0]);
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/parameters/ACutParameter.java b/graphics/AtlantisJava/src/atlantis/parameters/ACutParameter.java
deleted file mode 100755
index 490114e3e65..00000000000
--- a/graphics/AtlantisJava/src/atlantis/parameters/ACutParameter.java
+++ /dev/null
@@ -1,171 +0,0 @@
-package atlantis.parameters;
-
-import java.awt.Color;
-import java.awt.event.*;
-import javax.swing.*;
-
-import atlantis.output.ALogInterface;
-import atlantis.output.AOutput;
-import atlantis.utils.AUtilities;
-import atlantis.gui.AMutableCheckBox;
-import atlantis.gui.AParametersTable;
-import atlantis.gui.ATextField;
-
-/**
- * A parameter representing a cut on a variable.
- */
-public class ACutParameter extends AAbstractParameter {
- // name component
- private AMutableCheckBox checkBox;
-
- // value component
- private ATextField textField;
-
- private ActionListener statusActionListener, valueActionListener;
-
- public ACutParameter(
- String name, String screenName, String toolTip, String pv, int valueType, double value,
- String operators, String defOperator, boolean haseStatus, boolean status, boolean isMod,
- int userLevel, int scope, int unitsOf) {
-
- super(name, screenName, toolTip, valueType, value, operators, defOperator, haseStatus, status,
- isMod, userLevel, scope, unitsOf);
-
- range=resolvePossibleValues(pv, valueType);
- }
-
- public void setD(double v) {
- if(valueType!=FLOAT) throw new IllegalArgumentException("setD acces on not FLOAT parameter");
-
- if(textField!=null) textField.setText(""+v);
- _setD(v);
-
- refresh();
- }
-
- public void setI(int v) {
- if(valueType!=INT) throw new IllegalArgumentException("setI acces on not INT parameter");
-
- if(textField!=null) textField.setText(""+v);
- _setI(v);
-
- refresh();
- }
-
- public void initialize() {
- checkBox=new AMutableCheckBox(screenName);
- checkBox.setToolTipText(toolTip);
- if(getScope()==LOCAL)
- checkBox.setForeground(Color.black);
- else
- checkBox.setForeground(Color.blue);
-
- for(int i=0; i<operators.length; i++)
- checkBox.addItem(operators[i]);
-
- checkBox.finalizeConstruction();
- checkBox.setSelectedText(getOperator());
-
- statusActionListener=new ActionListener() {
- public void actionPerformed(ActionEvent e) {
- ACommandProcessor.receive(name);
- apply();
- }
- };
-
- valueActionListener=new ActionListener() {
- public void actionPerformed(ActionEvent e) {
- applyInput();
- }
- };
-
- checkBox.addStatusActionListener(statusActionListener);
- checkBox.addTextActionListener(valueActionListener);
-
- // after the first left click at the table in the parameter tabbed pane,
- // all the followingmouse mouse event will be catched by the mouselisteners of those
- // components inside the table cells, not the table itself, so in order for the local/global
- // switch (right click to change) to always work, have to add mouse listeners to these components
- // as well.
- checkBox.getCheckBox().addMouseListener(new MouseAdapter() {
- public void mousePressed(MouseEvent e) {
- if(AUtilities.isRightMouseButton(e)) {
- JPopupMenu popupMenu=new JPopupMenu();
- if(getScope()==AParameter.LOCAL) {
- popupMenu.add(AParametersTable.SET_GLOBAL).addActionListener(new ActionListener() {
- public void actionPerformed(ActionEvent e) {
- changeScope(AParameter.GLOBAL);
- refresh();
- }
- });
- } else {
- popupMenu.add(AParametersTable.SET_LOCAL).addActionListener(new ActionListener() {
- public void actionPerformed(ActionEvent e) {
- changeScope(AParameter.LOCAL);
- refresh();
- }
- });
- }
- popupMenu.show(checkBox.getCheckBox(), e.getX(), e.getY());
- }
- }
- });
-
- textField=new ATextField();
- textField.setToolTipText(toolTip);
-
- if(valueType==FLOAT)
- textField.setText(""+getD());
- else
- textField.setText(""+getI());
-
- textField.addActionListener(valueActionListener);
-
- /*
- textField.addFocusListener(new FocusAdapter() {
- public void focusLost(FocusEvent e) {
- applyInput();
- }
- });
- */
- }
-
- private void applyInput() {
- try {
- if(valueType==FLOAT) {
- double v=parseUnitsDouble(textField.getText());
-
- ACommandProcessor.receive(name+checkBox.getSelectedText()+v);
- apply();
- } else {
- int v=Integer.parseInt(textField.getText());
-
- ACommandProcessor.receive(name+checkBox.getSelectedText()+v);
- apply();
- }
- } catch(NumberFormatException nfe) {
- AOutput.append("value: "+textField.getText()+", is not correct!", ALogInterface.BAD_COMMAND);
- }
- }
-
- public JComponent getValueComponent() {
- return textField;
- }
-
- public JComponent getNameComponent() {
- return checkBox;
- }
-
- public void refresh() {
- if(textField!=null) {
- if(valueType==FLOAT)
- textField.setText(parseUnits(getD()));
- else
- textField.setText(""+getI());
- }
- if(checkBox!=null) checkBox.setStatus(getStatus());
- if(checkBox!=null) checkBox.setSelectedText(getOperator());
- fireParameterChanged();
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/parameters/AEnumeratorParameter.java b/graphics/AtlantisJava/src/atlantis/parameters/AEnumeratorParameter.java
deleted file mode 100755
index 92cdc8019c7..00000000000
--- a/graphics/AtlantisJava/src/atlantis/parameters/AEnumeratorParameter.java
+++ /dev/null
@@ -1,278 +0,0 @@
-package atlantis.parameters;
-
-import java.util.StringTokenizer;
-import java.util.Hashtable;
-import java.awt.event.ItemEvent;
-import java.awt.event.ItemListener;
-import javax.swing.JComponent;
-
-import atlantis.output.AExceptionHandler;
-import atlantis.gui.AComboBox;
-
-
-/**
- * A parameter that displays a finite list of possible values.
- * Used to contain items in pTexts String[], reimplemented to contain items
- * in Hash in order to be able to change the contents from event to event
- * (because of the multiple collections cuts).
- */
-public class AEnumeratorParameter extends AAbstractParameter
-{
- private AComboBox comboBox;
- private Hashtable<Integer, String> pTexts;
-
-
-
- public AEnumeratorParameter(String name, String screenName, String toolTip,
- String possibleValues, double value,
- boolean haseStatus, boolean status,
- int userLevel, int scope)
- {
- super(name, screenName, toolTip, INT, value, null, null, haseStatus,
- status, false, userLevel, scope, NOTHING);
-
- StringTokenizer st, tokenSt;
- st = new StringTokenizer(possibleValues, ",");
- int num = st.countTokens();
- if(num <= 0)
- {
- throw new Error("Empty \"pv\" attribute for ENUM: " + name);
- }
- pTexts = new Hashtable<Integer, String>();
- comboBox = new AComboBox();
- comboBox.setName(screenName);
-
- range = new double[3][];
- range[MIN] = null;
- range[MAX] = null;
- range[SVAL] = new double[num];
-
- for(int i = 0; i < num; i++)
- {
- tokenSt = new StringTokenizer(st.nextToken(), "=");
- if(tokenSt.countTokens() != 2)
- {
- throw new Error("Incomplete \"text = value\" declaration " +
- "for ENUM: " + name);
- }
- pTexts.put(new Integer(i), tokenSt.nextToken().trim());
-
- try
- {
- if(valueType == FLOAT)
- {
- range[SVAL][i] =
- Double.parseDouble(tokenSt.nextToken().trim());
- }
- else if(valueType == INT)
- {
- range[SVAL][i] =
- Integer.parseInt(tokenSt.nextToken().trim());
- }
- }
- catch(NumberFormatException nfe)
- {
- String msg = "Number error for ENUM: " + name + possibleValues;
- AExceptionHandler.processException(msg, nfe);
- }
- }
-
- } // AEnumeratorParameter() ---------------------------------------------
-
-
-
- public void setD(double v)
- {
- if(valueType != FLOAT)
- {
- throw new Error("setD access on not FLOAT parameter");
- }
- if(comboBox != null)
- {
- comboBox.setGUISelectedItem(getText(v));
- }
- _setD(v);
- refresh();
-
- } // setD() -------------------------------------------------------------
-
-
-
- public void setI(int v)
- {
- if(valueType != INT)
- {
- throw new Error("setI access on not INT parameter");
- }
- if(comboBox != null)
- {
- comboBox.setGUISelectedItem(getText(v));
- }
- _setI(v);
- refresh();
-
- } // setI() -------------------------------------------------------------
-
-
-
- public String getCurrentText()
- {
- return getText(getI());
-
- } // getCurrentText() ---------------------------------------------------
-
-
-
- public void clear()
- {
- pTexts.clear();
-
- } // clear() ------------------------------------------------------------
-
-
-
- public Hashtable<Integer, String> getValuesHashtable()
- {
- return pTexts;
-
- } // getValuesHashtable() -----------------------------------------------
-
-
-
- public int size()
- {
- return pTexts.size();
-
- } // size() -------------------------------------------------------------
-
-
-
- public String getText(double v)
- {
- for(int i = 0; i < pTexts.size(); i++)
- {
- if(range[SVAL][i] == v)
- {
- return pTexts.get(new Integer(i));
- }
- }
- return null;
-
- } // getText() ----------------------------------------------------------
-
-
-
- public double getValue(String text)
- {
- for(int i = 0; i < pTexts.size(); i++)
- {
- if(text.equals(pTexts.get(new Integer(i))))
- {
- return range[SVAL][i];
- }
- }
- return 0;
-
- } // getValue() ---------------------------------------------------------
-
-
-
- public void addItem(int key, String item)
- {
- pTexts.put(new Integer(key), item);
- range[SVAL] = new double[pTexts.size()];
- for(int i = 0; i < pTexts.size(); i++)
- {
- range[SVAL][i] = i;
- }
-
- } // addItem() ----------------------------------------------------------
-
-
- public void removeItem(String itemToRemove)
- {
- Hashtable<Integer, String> pTextsNew = new Hashtable<Integer, String>();
- for(int i = 0; i < pTexts.size(); i++)
- {
- String item = pTexts.get(new Integer(i));
- if(itemToRemove.equals(item))
- {
- continue;
- }
- else
- {
- pTextsNew.put(new Integer(pTextsNew.size()), item);
- }
- }
- pTexts = pTextsNew;
-
- range[SVAL] = new double[pTexts.size()];
- for(int i = 0; i < pTexts.size(); i++)
- {
- range[SVAL][i] = i;
- }
-
- } // removeItem() -------------------------------------------------------
-
-
-
- /**
- * Initialize the contained AComboBox with the list of items stored in this AEnumeratorParameter.
- * Also sets a listener to send the appropriate command when an item is selected.
- */
- public void initialize()
- {
- super.initialize();
- // remove all existing items from, in the constructor created, comboBox
- // rather than create a new instance here, because after the first
- // call of this initialize() method is not possible to update items
- // in the comboBox
- comboBox.removeAllItems();
- comboBox.setToolTipText(toolTip);
- for(int i = 0; i < pTexts.size(); i++)
- {
- String item = pTexts.get(new Integer(i));
- comboBox.addItem(item);
- }
- comboBox.setGUISelectedItem(getText(getI()));
- if (!comboBox.hasGUIItemListener()) {
- comboBox.setGUIItemListener(new ItemListener()
- {
- public void itemStateChanged(ItemEvent e)
- {
- if(e.getStateChange() == ItemEvent.SELECTED)
- {
- int index = comboBox.getSelectedIndex();
- String command = name + "=" + range[SVAL][index];
- ACommandProcessor.receive(command);
- apply();
- }
- }
- });
- }
- refresh();
- } // initialize() -------------------------------------------------------
-
-
-
- public JComponent getValueComponent()
- {
- return comboBox;
-
- } // getValueComponent() ------------------------------------------------
-
-
-
- public void refresh()
- {
- _refresh();
- if(comboBox != null)
- {
- comboBox.setGUISelectedItem(getText(getI()));
- }
- fireParameterChanged();
- } // refresh() ----------------------------------------------------------
-
-
-
-} // class AEnumeratorParameter =============================================
diff --git a/graphics/AtlantisJava/src/atlantis/parameters/ALinkParameter.java b/graphics/AtlantisJava/src/atlantis/parameters/ALinkParameter.java
deleted file mode 100755
index c1c732e42e6..00000000000
--- a/graphics/AtlantisJava/src/atlantis/parameters/ALinkParameter.java
+++ /dev/null
@@ -1,151 +0,0 @@
-package atlantis.parameters;
-
-
-import java.util.StringTokenizer;
-import javax.swing.JComponent;
-
-
-/**
- * A parameter which represents a link to another parameter.
- */
-public class ALinkParameter implements AParameter {
- private String groupName, parameterName;
- private AParameter parameter=null;
-
- public ALinkParameter(String linkTo) {
- StringTokenizer st=new StringTokenizer(linkTo.trim(), ".");
-
- groupName=st.nextToken().trim();
- parameterName=st.nextToken().trim();
- }
-
- public void solveLink() {
- parameter=APar.instance().get(groupName, parameterName);
- }
-
- public void initialize() {
- parameter.initialize();
- }
-
- public boolean isInitialized() {
- return parameter.isInitialized();
- }
-
- public void copy(int from, int to) {
- parameter.copy(from, to);
- }
-
- public void globalize(int window) {
- parameter.globalize(window);
- }
-
- public boolean isModulus() {
- return parameter.isModulus();
- }
-
- public int getValueType() {
- return parameter.getValueType();
- }
-
- public void setScope(int scope) {}
-
- public void changeScope(int scope) {
- parameter.changeScope(scope);
- }
-
- public int getScope() {
- return parameter.getScope();
- }
-
- public String getName() {
- return parameter.getName();
- }
-
- public String getScreenName() {
- return parameter.getScreenName();
- }
-
- public String getToolTip() {
- return parameter.getToolTip();
- }
-
- public boolean validateOperator(String oper) {
- return parameter.validateOperator(oper);
- }
-
- public boolean validateValue(double v) {
- return parameter.validateValue(v);
- }
-
- public void setD(double v) {
- parameter.setD(v);
- }
-
- public void setI(int v) {
- parameter.setI(v);
- }
-
- public double getD() {
- return parameter.getD();
- }
-
- public int getI() {
- return parameter.getI();
- }
-
- public String getValue() {
- return parameter.getValue();
- }
-
- public String getCurrentText(){
- if(parameter instanceof AEnumeratorParameter)
- return ((AEnumeratorParameter) parameter).getCurrentText();
- else
- return null;
- }
-
- public void setStatus(boolean status) {
- parameter.setStatus(status);
- }
-
- public boolean getStatus() {
- return parameter.getStatus();
- }
-
- public String toString() {
- return parameter.toString();
- }
-
- public String getOperator() {
- return parameter.getOperator();
- }
-
- public boolean processCommand(String oper, double value) {
- return parameter.processCommand(oper, value);
- }
-
- public JComponent getValueComponent() {
- return parameter.getValueComponent();
- }
-
- public JComponent getNameComponent() {
- return parameter.getNameComponent();
- }
-
- public void refresh() {
- parameter.refresh();
- }
-
- public int getUserLevel() {
- return parameter.getUserLevel();
- }
-
- public String getDifferences(String groupName) {
- return "";
- }
-
- @Override
- public void addParameterChangeListener(AParameterChangeListener listener) {
- if (parameter!=null) parameter.addParameterChangeListener(listener);
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/parameters/AListIntegerParameter.java b/graphics/AtlantisJava/src/atlantis/parameters/AListIntegerParameter.java
deleted file mode 100755
index 0f26c158813..00000000000
--- a/graphics/AtlantisJava/src/atlantis/parameters/AListIntegerParameter.java
+++ /dev/null
@@ -1,98 +0,0 @@
-package atlantis.parameters;
-
-import atlantis.utils.*;
-import atlantis.gui.AComboBox;
-import java.awt.event.ItemEvent;
-import java.awt.event.ItemListener;
-import javax.swing.JComponent;
-
-/**
- * A parameter which shows a list of possible integer values.
- */
-public class AListIntegerParameter extends AAbstractParameter {
-
- private static ALogger logger = ALogger.getLogger(AListIntegerParameter.class);
-
- private AComboBox comboBox;
- int[] displayableValues;
-
- public AListIntegerParameter(
- String name, String screenName, String toolTip, String pv, int value,
- boolean haseStatus, boolean status, int userLevel, int scope) {
-
- super(name, screenName, toolTip, INT, value, null, null, haseStatus, status, false, userLevel,
- scope, NOTHING);
-
- range=resolvePossibleValues(pv, INT);
- displayableValues=getValues(pv);
- }
-
- public void setD(double v) {
- throw new IllegalArgumentException("is not allowed to use setD on AListIntegerParameter");
- }
-
- public void setI(int v) {
- if(comboBox!=null) comboBox.setGUISelectedItem(""+v);
- _setI(v);
- refresh();
- }
-
- public void initialize() {
- super.initialize();
- comboBox=new AComboBox();
- comboBox.setEditable(true);
- comboBox.setToolTipText(toolTip);
-
- for(int i=0; i<displayableValues.length; i++)
- if(validateValue(displayableValues[i]))
- comboBox.addItem(""+displayableValues[i]);
- else throw new Error("Displayable Value: "+displayableValues[i]+" cannot be validated"
- +toString());
-
- comboBox.setGUISelectedItem(""+getI());
-
- comboBox.setGUIItemListener(new ItemListener() {
- public void itemStateChanged(ItemEvent e) {
- if(e.getStateChange()==ItemEvent.SELECTED)
- applyInput();
- }
- });
-
- /*
- comboBox.addFocusListener(new FocusAdapter() {
- public void focusLost(FocusEvent e) {
- applyInput();
- }
- });
- */
- }
-
- private void applyInput() {
- boolean error=false;
-
- try {
- int val=Integer.parseInt((String)comboBox.getSelectedItem());
-
- if(validateValue(val)) {
- ACommandProcessor.receive(name+"="+val);
- apply();
- } else
- error=true;
- } catch(NumberFormatException nfe) {
- error=true;
- }
- if(error)
- logger.error("value: "+comboBox.getSelectedItem()+", is not correct!");
- }
-
- public JComponent getValueComponent() {
- return comboBox;
- }
-
- public void refresh() {
- _refresh();
- if(comboBox!=null) comboBox.setGUISelectedItem(""+getI());
- fireParameterChanged();
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/parameters/ANumberParameter.java b/graphics/AtlantisJava/src/atlantis/parameters/ANumberParameter.java
deleted file mode 100755
index 403285e8648..00000000000
--- a/graphics/AtlantisJava/src/atlantis/parameters/ANumberParameter.java
+++ /dev/null
@@ -1,104 +0,0 @@
-package atlantis.parameters;
-
-import java.awt.event.ActionEvent;
-import java.awt.event.ActionListener;
-import javax.swing.JComponent;
-
-import atlantis.output.ALogInterface;
-import atlantis.output.AOutput;
-import atlantis.gui.ATextField;
-
-public class ANumberParameter extends AAbstractParameter {
- private ATextField textField;
-
- public ANumberParameter(
- String name, String screenName, String toolTip, String pv, int valueType, double value,
- boolean haseStatus, boolean status, boolean isMod, int userLevel, int scope, int unitsOf) {
-
- super(name, screenName, toolTip, valueType, value, null, null, haseStatus, status, isMod,
- userLevel, scope, unitsOf);
- range=resolvePossibleValues(pv, valueType);
- }
-
- public void setD(double v) {
- if(valueType!=FLOAT)
- throw new IllegalArgumentException("setD acces on not FLOAT parameter");
-
- _setD(v);
- refresh();
- }
-
- public void setI(int v) {
- if(valueType!=INT)
- throw new IllegalArgumentException("setI acces on not INT parameter");
-
- if(textField!=null) textField.setText(""+v);
- _setI(v);
- }
-
- public void initialize() {
- super.initialize();
-
- textField=new ATextField();
- textField.setEditable(true);
- textField.setToolTipText(toolTip);
-
- if(valueType==FLOAT)
- textField.setText(""+getD());
- else
- textField.setText(""+getI());
-
- textField.addActionListener(new ActionListener() {
- public void actionPerformed(ActionEvent e) {
- applyInput();
- }
- });
-
- /*
- textField.addFocusListener(new FocusAdapter() {
- public void focusLost(FocusEvent e) {
- applyInput();
- }
- });
- */
- }
-
- private void applyInput() {
- boolean error=false;
-
- try {
- double val=parseUnitsDouble(textField.getText());
-
- if(validateValue(val)) {
- if(valueType==FLOAT) {
- ACommandProcessor.receive(name+getOperator()+val);
- apply();
- } else {
- ACommandProcessor.receive(name+getOperator()+(int)val);
- apply();
- }
- } else
- error=true;
- } catch(NumberFormatException nfe) {
- error=true;
- }
- if(error)
- AOutput.append("value: "+textField.getText()+", is not correct!", ALogInterface.BAD_COMMAND);
- }
-
- public JComponent getValueComponent() {
- return textField;
- }
-
- public void refresh() {
- _refresh();
- if(textField!=null) {
- if(valueType==FLOAT)
- textField.setText(parseUnits(getD()));
- else
- textField.setText(""+getI());
- }
- fireParameterChanged();
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/parameters/APar.java b/graphics/AtlantisJava/src/atlantis/parameters/APar.java
deleted file mode 100644
index 1aefa78f03b..00000000000
--- a/graphics/AtlantisJava/src/atlantis/parameters/APar.java
+++ /dev/null
@@ -1,657 +0,0 @@
-package atlantis.parameters;
-
-import java.util.ArrayList;
-
-import java.util.HashSet;
-import java.util.Hashtable;
-import java.util.List;
-import java.util.Set;
-import java.util.Vector;
-
-import org.w3c.dom.NamedNodeMap;
-import org.w3c.dom.Node;
-import org.w3c.dom.NodeList;
-
-import atlantis.canvas.ACanvas;
-import atlantis.canvas.AWindow;
-import atlantis.data.AJetData;
-import atlantis.event.AEvent;
-import atlantis.event.AEventManager;
-import atlantis.event.ANewEventListener;
-import atlantis.utils.ALogger;
-import atlantis.utils.xml.AXMLUtils;
-
-/**
- * The Atlantis parameters store. Contains a list of AParametersGroup
- * groups of parameters.
- *
- * The class keeps a reference to a singleton instance, but this must initially be created using
- * the method {@link #construct(Node)}. Attempting to access the instance before initialization will
- * cause an Error to be thrown.
- *
- * Ideally the APar instance would be passed to the classes that need it when the application is
- * initalized, but currently the instance is fetched where it is needed, in many different parts of
- * the code.
- */
-public final class APar implements ANewEventListener, AParameterChangeListener
-{
- private static ALogger logger = ALogger.getLogger(APar.class);
-
- private final List<AParameterSuperGroup> superGroups = new ArrayList<AParameterSuperGroup>();
-
- /** Index of the currently selected window */
- private int currentWindowIndex;
- /** Index of the previously selected window.
- * Used for obtaining temporary access to parameters of some window!
- */
- private int previousIndex;
-
- /** Parameter change listeners: just the GUI for now. */
- private List<AParameterChangeListener> parameterChangeListeners = new ArrayList<AParameterChangeListener>();
-
- /** The user level of the program */
- private int userLevel;
-
- /** The singleton instance */
- private static APar instance;
-
- /**
- * Create and return the singleton instance.
- * @param parameters
- */
- public synchronized static APar construct(Node parameters) {
- instance = new APar();
- instance.initialize(parameters);
- return instance;
- }
-
- /**
- * Get the singleton instance.
- * @return
- */
- public synchronized static APar instance() {
- if (instance==null) throw new Error("Attempted to access APar instance before initialization.");
- return instance;
- }
-
- /**
- * For testing only: create instance without initializing.
- * @return
- */
- public static synchronized APar constructDummyForTesting() {
- instance = new APar();
- return instance;
- }
-
- /**
- * Constructs dummy singleton instance for testing.
- */
- private APar() {}
-
- /**
- * Constructs the singleton instance by reading the config file.
- */
- private void initialize(Node parameters)
- {
- String ul=parameters.getAttributes().getNamedItem("userLevel").getNodeValue();
- userLevel=Integer.parseInt(ul);
-
- NodeList superGroupNodes=parameters.getChildNodes();
- for(int s=0; s<superGroupNodes.getLength(); s++)
- {
- Node superGroupNode = superGroupNodes.item(s);
- if (superGroupNode.getNodeType() == Node.ELEMENT_NODE)
- {
- // here we have a <SuperGroup> element
- AParameterSuperGroup superGroup = AParameterSuperGroup.readSuperGroup(superGroupNode,userLevel);
- superGroup.addParameterChangeListener(this);
-
- this.superGroups.add(superGroup);
- }
- }
- // Can't resolve link parameters until all parameters configured.
- for (AParameterSuperGroup superGroup : superGroups) {
- superGroup.resolveLinkParameters();
- }
-
- previousIndex=-1;
- }
-
- /** Used to take into account differences in local parameters. */
- public void update(Node differences)
- {
- if(differences==null) return;
- NodeList children=differences.getChildNodes();
- int childrenCount=children.getLength();
- for(int i=0; i<childrenCount; i++)
- {
- Node diff=children.item(i);
- if(diff.getNodeType()==Node.ELEMENT_NODE)
- {
- NamedNodeMap attributes=diff.getAttributes();
- String group=AXMLUtils.tryAttribut(attributes, "group");
- String name=AXMLUtils.tryAttribut(attributes, "name");
- String windowName=AXMLUtils.tryAttribut(attributes, "windowName");
- String va=AXMLUtils.tryAttribut(attributes, "va");
- String st=AXMLUtils.tryAttribut(attributes, "st");
- String op=AXMLUtils.tryAttribut(attributes, "op");
- AParameter p=get(group, name);
- if(p instanceof AAbstractParameter)
- {
- // When setting a global variable for just one window, make it local first
- if (((AAbstractParameter)p).getScope() == AAbstractParameter.GLOBAL && !windowName.equals("*")) {
- System.out.println("Setting scope to local for "+p.getName());
- ((AAbstractParameter)p).setScope(AAbstractParameter.LOCAL);
- }
- if(va!=null&&!va.equals(""))
- {
- ((AAbstractParameter)p)._setValue(windowName, Double.parseDouble(va));
- }
- if(st!=null&&!st.equals(""))
- {
- if(st.equals("ON"))
- ((AAbstractParameter)p)._setStatus(windowName, true);
- else if(st.equals("OFF"))
- ((AAbstractParameter)p)._setStatus(windowName, false);
- }
- if(op!=null&&!op.equals(""))
- {
- ((AAbstractParameter)p)._setOperator(windowName, op);
- }
- ((AAbstractParameter)p).saveDefaults();
- }
- }
- }
- }
-
- /** Restore default settings of all parameters. */
- public void restoreDefaults()
- {
- for (AParameterSuperGroup superGroup : superGroups) {
- superGroup.restoreDefaults();
- }
- }
-
- /**
- * Get parameter supergroups corresponding to current user level.
- * i.e. Those with a user level less than or equal to the current level.
- * @return supergroups corresponding to current user level
- */
- public List<AParameterSuperGroup> getUISuperGroups() {
- List<AParameterSuperGroup> uiSuperGroups = new ArrayList<AParameterSuperGroup>();
- for (AParameterSuperGroup superGroup : superGroups) {
- if (superGroup.getUserLevel()<=this.userLevel) uiSuperGroups.add(superGroup);
- }
- return uiSuperGroups;
- }
-
- /**
- * Get all the parameter groups used by the GUI, according to the user level.
- * @return the parameter groups
- */
- public AParametersGroup[][] getUIGroups()
- {
- List<AParametersGroup[]> uiSuperGroups = new ArrayList<AParametersGroup[]>();
- for (AParameterSuperGroup superGroup : superGroups) {
- List<AParametersGroup> uiGroups = superGroup.getUIGroups();
- AParametersGroup[] uiGroupsArray = uiGroups.toArray(new AParametersGroup[uiGroups.size()]);
- uiSuperGroups.add(uiGroupsArray);
- }
- AParametersGroup[][] groups =
- uiSuperGroups.toArray(new AParametersGroup[uiSuperGroups.size()][]);
- return groups;
- }
-
- /**
- * Get names of groups of given usage type to display in GUI.
- * @param uiUsage UI usage type to select
- * @return the group names
- */
- public Vector<String> getUIGroupNames(int uiUsage) {return getUIGroupNames(false,uiUsage);}
-
- /**
- * Get names of groups to display in GUI.
- * @return the group names
- */
- public Vector<String> getUIGroupNames() {return getUIGroupNames(true,0);}
-
- /**
- * Get names of groups to display in GUI.
- * @param selectAll true to select all regardless of UI usage
- * @param uiUsage ignored if selectAll is true
- * @return the group names
- */
- private Vector<String> getUIGroupNames(boolean selectAll, int uiUsage) {
- Vector<String> v=new Vector<String>();
- AParametersGroup[][] g=getUIGroups();
- for(int i=0;i<g.length;++i)
- for(int j=0;j<g[i].length;++j)
- if(selectAll || (g[i][j].getUIUsage()==uiUsage))
- v.addElement(g[i][j].getGroupName());
- return v;
- }
-
- /**
- * Find parameter group with given name.
- * @param groupName name to look for
- * @return the group, or null if not found
- */
- public AParametersGroup getGroup(String groupName)
- {
- for (AParameterSuperGroup superGroup : superGroups) {
- AParametersGroup group = superGroup.getGroup(groupName);
- if (group!=null) return group;
- }
- return null;
- }
-
- public int getUserLevel()
- {
- return userLevel;
- }
-
- public AParameter get(String group, String name)
- {
- AParametersGroup g = getGroup(group);
- if(g == null)
- {
- logger.debug("No group named \"" + group + "\"");
- return null;
- }
-
- AParameter p = g.getParameter(name);
- if(p == null)
- {
- logger.debug("No parameter named \"" + group + ":" + name + "\"");
- }
-
- return p;
- }
-
- public AParameter getUnknown(String group, String name)
- {
- AParametersGroup grp = getGroup(group);
- if(grp==null)
- return null;
- else
- return grp.getParameter(name);
- }
-
- /**
- * Returns the values of an array of parameters
- * (can be ANY order: C1, C2, C3 ...)
- */
- public int[] getArray(String groupName, String name, int numEntries)
- {
- int[] array=new int[numEntries];
-
- String baseName=name.substring(0, name.length()-1);
- int baseNumber=Integer.parseInt(name.substring(name.length()-1, name.length()));
-
- for(int i=0; i<numEntries; i++)
- array[i]=this.get(groupName, baseName+(baseNumber+i)).getI();
-
- return array;
- }
-
- boolean processParameterChangeCommand(String parameterChangeCommand)
- {
- String parameterName, sValue;
- double value;
- AParameter parameter=null;
- String groupName = ACanvas.getCanvas().getCurrentWindow().getGroupName();
-
- for(int i=0; i<AParameter.supportedOperators.length; i++)
- {
- int index=parameterChangeCommand.indexOf(AParameter.supportedOperators[i]);
-
- if(index!=-1)
- {
- parameterName=parameterChangeCommand.substring(0, index).trim();
- AParametersGroup pg = getGroup(groupName);
-
- parameter=pg.getParameter(parameterName);
-
- /* AEvent calls listbox initialize in order to change its values from
- event to event basis
- AEnumeratorParameter.initialize() ->
- ACommandProcessor.receive() -> .process() ->
- APar.processParameterChangeCommand()
-
- In case of ETMis - warning 'ETMisCollections=0.0 bad command' when
- ATLAS->ETMis group wasn't the active one for a current window.
- Following statement however continues if the group tab (ETMis) is
- active, so it's not a bad command.
- This will have to be dealt with when implementing the keyboard
- commands mode of driving Atlantis, it would have to be possible to
- change values, etc of group tabs which are not active. It should be
- easy as local commands (like ETMisCollections) would say name of
- parameter group they belong to. Proper groupName would the only problem.
- */
- if(parameter==null)
- {
- logger.debug("APar: warning: parameter " + parameterName +
- " doesn't exist " + "in active group tab " + groupName);
- return true; // prevent printing warning 'bad command ...'
-
- // return false; - used to, hence raising 'bad command ... ' in
- // ACommandProcessor.receive(). the same effect.
- }
-
- sValue=parameterChangeCommand.substring(index+AParameter.supportedOperators[i].length(), parameterChangeCommand.length()).trim();
-
- if(sValue.equals("")) break;
-
- try
- {
- value=Double.parseDouble(sValue);
- }
- catch(NumberFormatException e)
- {
- return false;
- }
-
- return parameter.processCommand(AParameter.supportedOperators[i], value);
- }
- }
-
- AParametersGroup pg = getGroup(groupName);
-
- parameterName=parameterChangeCommand.trim();
- parameter=pg.getParameter(parameterName);
- if(parameter!=null)
- {
- if(parameter.getStatus()==true)
- parameter.setStatus(false);
- else
- parameter.setStatus(true);
- return true;
- }
- else
- return false;
- }
-
- /**
- * Copy parameters from one window to another.
- * @param sourceName name of source window
- * @param destName name of destination window
- */
- public void copyParameters(String sourceName, String destName)
- {
- for (AParameterSuperGroup superGroup : superGroups) {
- superGroup.copyParameters(sourceName, destName);
- }
- }
-
- public void copyCurrentGroupLocalsTo(String destinationWindow)
- {
- if(ACanvas.getCanvas().isValidWindowName(destinationWindow))
- {
- AWindow w=ACanvas.getCanvas().getCurrentWindow();
- Vector<AParameter> params=(getGroup(w.getGroupName())).getParameters(userLevel);
-
- int from=w.getIndex();
- int to=ACanvas.getCanvas().getWindow(destinationWindow).getIndex();
-
- for(int i=0; i<params.size(); i++)
- {
- AParameter p=(AParameter)params.elementAt(i);
-
- if(p.getScope()==AParameter.LOCAL)
- p.copy(from, to);
- }
- }
- else
- throw new Error("copyCurrentGroupLocalsTo, unknown: "+destinationWindow);
- }
-
- /**
- * selectWindowParameters/restoreWindowParameters methods are used for
- * obtaining temporary access to parameters of some window
- */
- public void selectWindowParameters(String newWindow)
- {
- //ACH - this was getting thrown sometimes, and I don't know why...
- //if(previousIndex!=-1)
- //throw new Error("selectWindowParameters, Try to select twice !?");
-
- if(ACanvas.getCanvas().isValidWindowName(newWindow))
- {
- previousIndex=getCurrentWindowIndex();
- setCurrentWindowIndex(ACanvas.getCanvas().getWindow(newWindow).getIndex());
- }
- else
- throw new Error("selectWindowParameters, window: "+newWindow+" , doesn't exist !?");
- }
-
- /**
- * selectWindowParameters/restoreWindowParameters methods are used for
- * obtaining temporary access to parameters of some window
- */
- public void restoreWindowParameters()
- {
- if(previousIndex!=-1)
- {
- setCurrentWindowIndex(previousIndex);
- previousIndex=-1;
- }
- else
- throw new Error("restoreWindowParameters: you have nothing to restore !?");
- }
-
- /**
- * @param currentWindowIndex the currentWindowIndex to set
- */
- public void setCurrentWindowIndex(int currentWindowIndex) {
- this.currentWindowIndex = currentWindowIndex;
- }
-
- /**
- * @return the currentWindowIndex
- */
- public int getCurrentWindowIndex() {
- return currentWindowIndex;
- }
-
- /**
- * Add a listener to be informed of parameter changes.
- *
- * @param listener
- */
- public void addParameterChangeListener(AParameterChangeListener listener) {
- parameterChangeListeners.add(listener);
- }
-
- /**
- * Tell the listeners that a parameter has changed.
- */
- @Override
- public void parameterChanged(AParameter parameter) {
- if(parameter.getName().equals("JetBTagger")){
- this.setDefaultBTaggerValue(parameter);
- }
- for (AParameterChangeListener listener : parameterChangeListeners) {
- listener.parameterChanged(parameter);
- }
- }
-
- @Override
- public void newEvent(AEvent event) {
- // update collection cut listboxes for collection-aware datatypes
- updateCollectionsListBoxes(event);
- updateBTaggerListBox(event);
- }
-
- /**
- * Update collection cut listboxes for collection-aware datatypes.
- */
- private void updateCollectionsListBoxes(AEvent event)
- {
- Hashtable<String,Vector<String>> collections = event.getCollections();
- String listBoxName = null;
- Hashtable<Integer, String> listBoxPreviousContents = null;
- Vector<String> keys = null;
- String[] keysArray = null;
- boolean contentsChanged = false; // contents of listbox change watchdog
- Set<AEnumeratorParameter> updatedEnumeratorParameters = new HashSet<AEnumeratorParameter>();
-
- // note - listBox.initialize()
- // if tab containing this particular listbox was active, it didn't
- // take effect to set different value by .setI() as default value
- // was in this case always the first one added - .initialize() called
- // automatically when tabpane is active
- // if tabpane wasn't active it worked fine
- for (String dataTypeName : collections.keySet())
- {
- contentsChanged = false;
- listBoxName = dataTypeName + "Collections";
- keys = collections.get(dataTypeName);
- AEnumeratorParameter listBox = (AEnumeratorParameter) this.get(dataTypeName, listBoxName);
- keysArray = keys.toArray(new String[keys.size()]);
-
- listBoxPreviousContents = listBox.getValuesHashtable();
-
- for(int i = 0; i < listBoxPreviousContents.size(); i++)
- {
- String item = (String) listBoxPreviousContents.get(new Integer(i));
- if(keys.contains(item) || "All".equals(item))
- {
- continue;
- }
- else
- {
- contentsChanged = true;
- listBox.removeItem(item);
- }
- }
-
- for(int i = 0; i < keysArray.length; i++)
- {
- if(listBoxPreviousContents.containsValue(keysArray[i]))
- {
- continue;
- }
- else
- {
- contentsChanged = true;
- listBox.addItem(listBox.size(), keysArray[i]);
- }
- }
-
- // if the previous event had completely different collections than
- // the current one, 'all' item will be the only one which remained
- // after removal (the first loop). then the current (new) collections
- // were added in the secold loop and 'all' item was in this case the
- // fist, hence the default one - not desired
- // solution: if any changes were performed in these two loops
- // (contentsChanged variable set to true), the listbox will
- // get re-initialised anyway. by removing 'all' and subsequent
- // adding it the first collection from the event will be the default
- // one and 'all' would be the last item - as desired
- if(contentsChanged && !dataTypeName.endsWith("Segment"))
- {
- listBox.removeItem("All");
- listBox.addItem(listBox.size(), "All");
- listBox.initialize();
- }
- updatedEnumeratorParameters.add(listBox);
- } // while
- // Get the enumerator parameters so we can tell them about the new event.
- List<AEnumeratorParameter> collectionParameters = new ArrayList<AEnumeratorParameter>();
- for (AParameterSuperGroup superGroup : superGroups) {
- collectionParameters.addAll(superGroup.getCollectionParameters());
- }
- for (AEnumeratorParameter listBox : collectionParameters) {
- if (!updatedEnumeratorParameters.contains(listBox)) {
- listBox.clear();
- listBox.addItem(0, "None");
- listBox.initialize();
- }
- }
- } // updateCollectionsCutListBoxes() ------------------------------------
-
- /**
- * Update btagging cut listboxes for available btaggers.
- *
- * @param event The current event
- *
- * TODO: Make this independent of context (ie. pass it the name of the listBox to update, plus the values it should use) ? - Tom
- */
- private void updateBTaggerListBox(AEvent event)
- {
- AJetData currentjets = event.getJetData();
- if (currentjets==null) return;
- List<String> taggers = currentjets.getBTaggers();
- Set<AEnumeratorParameter> updatedEnumeratorParameters = new HashSet<AEnumeratorParameter>();
- AEnumeratorParameter listBox = (AEnumeratorParameter) this.get("CutsObjects", "JetBTagger");
-
- if(taggers.size() == 0) {
- listBox.clear();
- listBox.addItem(0, "None");
- }
-
- for(int i=0; i<taggers.size(); i++) {
- listBox.addItem(i, taggers.get(i));
- }
-
- listBox.initialize();
- updatedEnumeratorParameters.add(listBox);
-
- } // updateBTaggerListBox() ------------------------------------
-
- /**
- * Keep a list of popular 'default' values for various b-taggers
- * If we don't know about the b-tagger, use a fallback default of 1.0
- *
- * @param parameter The current BTagger parameter
- */
- public void setDefaultBTaggerValue(AParameter parameter) {
- AEventManager eventManager = AEventManager.instance();
-
- //Necessary code to stop B-tagging listener when having no-jet-info xml file
- AJetData Jetss = eventManager.getCurrentEvent().getJetData();
- if(Jetss == null)
- return;
-
- // Grab the b-taggers from the current Jet Collection
- List<String> taggers = eventManager.getCurrentEvent().getJetData().getBTaggers();
- if(taggers.size() == 0)
- return;
-
- // Get the BTagName corresponding to the current selection (ordering!)
- // String newTagger = taggers.get(parameter.getI());
- String newTagger = taggers.get(parameter.getI());
-
-
- if(newTagger.equals(new String("SV0"))){
- get("CutsObjects", "JetBTagweight").setD(5.25);
- }
- else if(newTagger.equals(new String("SV1"))){
- get("CutsObjects", "JetBTagweight").setD(1.00);
- }
- else if(newTagger.equals(new String("JetFitterCOMBNN"))){
- get("CutsObjects", "JetBTagweight").setD(2.4);
- }
- else if(newTagger.equals(new String("IP3D+SV1")) || newTagger.equals(new String("IP3DSV1"))){
- get("CutsObjects", "JetBTagweight").setD(1.55);
- }
- else if(newTagger.equals(new String("JetFitterTagNN"))){
- get("CutsObjects", "JetBTagweight").setD(1.55);
- }
- else if(newTagger.equals(new String("IP2D"))){
- get("CutsObjects", "JetBTagweight").setD(1.00);
- }
- else if(newTagger.equals(new String("IP3D"))){
- get("CutsObjects", "JetBTagweight").setD(1.00);
- }
- else if(newTagger.equals(new String("SV2"))){
- get("CutsObjects", "JetBTagweight").setD(1.00);
- }
- else if(newTagger.equals(new String("MV1"))){
- get("CutsObjects", "JetBTagweight").setD(0.601713);
- }
- else {
- get("CutsObjects", "JetBTagweight").setD(1.00);
- }
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/parameters/AParameter.java b/graphics/AtlantisJava/src/atlantis/parameters/AParameter.java
deleted file mode 100755
index 31b3ce329c6..00000000000
--- a/graphics/AtlantisJava/src/atlantis/parameters/AParameter.java
+++ /dev/null
@@ -1,107 +0,0 @@
-package atlantis.parameters;
-
-
-import javax.swing.JComponent;
-
-
-/**
- * This interface defines all the methods a parameter should have.
- */
-public interface AParameter {
- // scope constants
- int LOCAL=1;
- int GLOBAL=2;
-
- // value type constants
- int NO_VALUE=0;
- int INT=1;
- int FLOAT=2;
-
- /** All supported supportedOperators */
- static final String[] supportedOperators= {"!=", ">=", ">", "<=", "<", "="};
-
- /** Initializes graphics for this parameter. */
- void initialize();
-
- /** Checks if the parameters graphics is initialized. */
- boolean isInitialized();
-
- /** Copies the value and status from one window to the other. */
- void copy(int from, int to);
-
- /** Copies the value and status from "window" in all the others. */
- void globalize(int window);
-
- /** Returns true if parameter is modulus, i.e. sign is irrelevant. */
- boolean isModulus();
-
- /** Return NO_VALUE, INT or FLOAT. */
- int getValueType();
-
- /** sets the scope to LOCAL or GLOBAL. */
- void setScope(int scope);
-
- /** Returns the scope of the parameter. */
- int getScope();
-
- /** Changes scope after it has originally been set. */
- void changeScope(int scope);
-
- /** Returns the name of the parameter. */
- String getName();
-
- /** returns the screen name of the parameter. */
- String getScreenName();
-
- /** Returns the tooltip text. */
- String getToolTip();
-
- /** Returns the current operator assigned to parameter. */
- String getOperator();
-
- /** Sets the double value for parameter. */
- void setD(double v);
- void setI(int v);
-
- /** Returns the value of the parameter. */
- double getD();
- /** Returns the value of the parameter. */
- int getI();
- /** Returns the value of the parameter. */
- String getValue();
-
- /** Sets the parameter's status. */
- void setStatus(boolean status);
-
- /** Returns the current status. */
- boolean getStatus();
-
- /** Returns the graphical component used to display the Name and Status of this parameter. */
- JComponent getNameComponent();
-
- /** Returns the graphical component used to display the value of this parameter. */
- JComponent getValueComponent();
-
- /** Make synchronisation between the value and status and graphical components. */
- void refresh();
-
- /** Returns true if "oper" represents an valid operator for this parameter. */
- boolean validateOperator(String oper);
-
- /** Returns true if "v" represents a valid value for this parameter. */
- boolean validateValue(double v);
-
- String getDifferences(String groupName);
-
- /** Validates and updates the current operator and value. */
- boolean processCommand(String oper, double v);
-
- /** Returns the user level associated with the parameter. */
- int getUserLevel();
-
- /** Returns a String representation of the parameter. */
- String toString();
-
- /** Add a parameter change listener. */
- void addParameterChangeListener(AParameterChangeListener listener);
-}
diff --git a/graphics/AtlantisJava/src/atlantis/parameters/AParameterChangeListener.java b/graphics/AtlantisJava/src/atlantis/parameters/AParameterChangeListener.java
deleted file mode 100644
index b65e530b826..00000000000
--- a/graphics/AtlantisJava/src/atlantis/parameters/AParameterChangeListener.java
+++ /dev/null
@@ -1,11 +0,0 @@
-package atlantis.parameters;
-
-/**
- * Used by GUI to listen for changed parameters.
- *
- * @author waugh
- *
- */
-public interface AParameterChangeListener {
- void parameterChanged(AParameter parameter);
-}
diff --git a/graphics/AtlantisJava/src/atlantis/parameters/AParameterConfigReader.java b/graphics/AtlantisJava/src/atlantis/parameters/AParameterConfigReader.java
deleted file mode 100644
index 8a2a88e9eae..00000000000
--- a/graphics/AtlantisJava/src/atlantis/parameters/AParameterConfigReader.java
+++ /dev/null
@@ -1,114 +0,0 @@
-package atlantis.parameters;
-
-import org.w3c.dom.NamedNodeMap;
-import org.w3c.dom.Node;
-
-import atlantis.utils.xml.AXMLUtils;
-
-/**
- * Construct AParameter objects from the XML configuration file.
- *
- * @author waugh
- *
- */
-public class AParameterConfigReader {
- /**
- * This function reads any type of parameters.
- * @param parameter The Node containing the definition of the parameter.
- * @return An AParameter object.
- */
- static AParameter readParameter(Node parameter, int groupScope)
- {
- AParameter par=null;
-
- // the node name of the parameter decides its type
- String type=parameter.getNodeName();
-
- // read all the parameter atributes
- NamedNodeMap attributes=parameter.getAttributes();
- String fn=AXMLUtils.tryAttribut(attributes, "fn");
- String sn=AXMLUtils.tryAttribut(attributes, "sn");
- String sst=AXMLUtils.tryAttribut(attributes, "st");
- String sisMod=AXMLUtils.tryAttribut(attributes, "isMod");
- String sva=AXMLUtils.tryAttribut(attributes, "va");
- String op=AXMLUtils.tryAttribut(attributes, "op");
- String dop=AXMLUtils.tryAttribut(attributes, "dop");
- String to=AXMLUtils.tryAttribut(attributes, "to");
- String pv=AXMLUtils.tryAttribut(attributes, "pv");
- String tip=AXMLUtils.tryAttribut(attributes, "tip");
- String scopeAtt=AXMLUtils.tryAttribut(attributes, "scope");
- String unitsOfAtt=AXMLUtils.tryAttribut(attributes, "u");
-
- // set scope value for this parameter
- int scope=groupScope;
- if(scopeAtt!=null)
- {
- if(scopeAtt.equals("LOCAL"))
- scope=AParameter.LOCAL;
- else if(scopeAtt.equals("GLOBAL"))
- scope=AParameter.GLOBAL;
- }
-
- // set user level for this parameter
- int ul=-1;
- if(!type.equals("LINK"))
- ul=Integer.parseInt(AXMLUtils.tryAttribut(attributes, "ul"));
-
- double va=0;
- if(sva!=null) va=Double.parseDouble(sva);
-
- // set initial status of this parameter
- boolean st=false;
- if(sst!=null)
- if(sst.equals("ON"))
- st=true;
-
- boolean isMod=false;
- if(sisMod!=null)
- if(sisMod.equals("YES"))
- isMod=true;
-
- int unitsOf=0;
- if(unitsOfAtt!=null)
- unitsOf=Integer.parseInt(unitsOfAtt);
-
- // create an AParameter object based on its type
- if(type.equals("LINK"))
- par=new ALinkParameter(to);
- else if(type.equals("COLOR"))
- par=new AColorParameter(fn, sn, tip, pv, va, false, st, ul, scope);
- else if(type.equals("SCOLOR"))
- par=new AColorParameter(fn, sn, tip, pv, va, true, st, ul, scope);
- else if(type.equals("ENUM"))
- par=new AEnumeratorParameter(fn, sn, tip, pv, va, false, st, ul, scope);
- else if(type.equals("SENUM"))
- par=new AEnumeratorParameter(fn, sn, tip, pv, va, true, st, ul, scope);
- else if(type.equals("ICUT"))
- par=new ACutParameter(fn, sn, tip, pv, AParameter.INT, va, op, dop, false, st, isMod, ul, scope, unitsOf);
- else if(type.equals("SICUT"))
- par=new ACutParameter(fn, sn, tip, pv, AParameter.INT, va, op, dop, true, st, isMod, ul, scope, unitsOf);
- else if(type.equals("FCUT"))
- par=new ACutParameter(fn, sn, tip, pv, AParameter.FLOAT, va, op, dop, false, st, isMod, ul, scope, unitsOf);
- else if(type.equals("SFCUT"))
- par=new ACutParameter(fn, sn, tip, pv, AParameter.FLOAT, va, op, dop, true, st, isMod, ul, scope, unitsOf);
- else if(type.equals("FLOAT"))
- par=new ANumberParameter(fn, sn, tip, pv, AParameter.FLOAT, va, false, st, isMod, ul, scope, unitsOf);
- else if(type.equals("SFLOAT"))
- par=new ANumberParameter(fn, sn, tip, pv, AParameter.FLOAT, va, true, st, isMod, ul, scope, unitsOf);
- else if(type.equals("INT"))
- par=new ANumberParameter(fn, sn, tip, pv, AParameter.INT, (int)va, false, st, isMod, ul, scope, unitsOf);
- else if(type.equals("SINT"))
- par=new ANumberParameter(fn, sn, tip, pv, AParameter.INT, (int)va, true, st, isMod, ul, scope, unitsOf);
- else if(type.equals("LINT"))
- par=new AListIntegerParameter(fn, sn, tip, pv, (int)va, false, st, ul, scope);
- else if(type.equals("SLINT"))
- par=new AListIntegerParameter(fn, sn, tip, pv, (int)va, true, st, ul, scope);
- else if(type.equals("STATUS"))
- par=new AStatusParameter(fn, sn, tip, st, ul, scope);
- else if(type.equals("StatusRoot"))
- par = new AStatusRootParameter(parameter, fn, sn, tip, ul, scope);
- else if(type.equals("StatusGroup"))
- par = new AStatusGroupParameter(parameter, fn, sn, tip, ul, scope);
- return par;
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/parameters/AParameterData.java b/graphics/AtlantisJava/src/atlantis/parameters/AParameterData.java
deleted file mode 100644
index 0abcdf85799..00000000000
--- a/graphics/AtlantisJava/src/atlantis/parameters/AParameterData.java
+++ /dev/null
@@ -1,202 +0,0 @@
-package atlantis.parameters;
-
-/**
- * Encapsulates the per-window data belonging to a parameter.
- *
- * @author waugh
- *
- */
-public class AParameterData {
- private AParameterState[] state;
- private AParameterState[] defaultState;
-
- protected final APar parameterStore = APar.instance();
-
- /**
- * Create AParameterData for given number of windows.
- * @param numWindows number of windows in the canvas
- */
- AParameterData(int numWindows) {
- state = new AParameterState[numWindows];
- defaultState = new AParameterState[numWindows];
- initializeParameterState(state);
- initializeParameterState(defaultState);
- }
-
- /**
- * Initialize arrays of AParameterState objects.
- * @param state
- */
- private static void initializeParameterState(AParameterState[] state) {
- for (int i=0; i<state.length; ++i) {
- state[i] = new AParameterState();
- }
- }
-
- /**
- * Return the state of this parameter for a given window.
- * @param windowIndex index of window
- * @return the state
- */
- AParameterState getState(int windowIndex) {
- return state[windowIndex];
- }
-
- /**
- * Get value of parameter for current window.
- * @return value
- */
- public double getValue() {
- int currentWindowIndex = parameterStore.getCurrentWindowIndex();
- return getValue(currentWindowIndex);
- }
-
- /**
- * Get value of parameter for given window.
- * @param windowIndex index of window
- * @return value
- */
- public double getValue(int windowIndex) {
- return state[windowIndex].value;
- }
-
- /**
- * Set value of parameter for current window.
- * @param value
- */
- public void setValue(double value) {
- int currentWindowIndex = parameterStore.getCurrentWindowIndex();
- setValue(currentWindowIndex,value);
- }
-
- /**
- * Set value of parameter for given window.
- * @param windowIndex index of window
- * @param value
- */
- public void setValue(int windowIndex, double value) {
- this.state[windowIndex].value = value;
- }
-
- /**
- * Get status (whether parameter is enabled) for current window.
- * @return true if enabled
- */
- public boolean getStatus() {
- int currentWindowIndex = parameterStore.getCurrentWindowIndex();
- return getStatus(currentWindowIndex);
- }
-
- /**
- * Get status (whether parameter is enabled) for given window.
- * @param windowIndex index of window
- * @return true if enabled
- */
- public boolean getStatus(int windowIndex) {
- return state[windowIndex].status;
- }
-
- /**
- * Set status (whether parameter is enabled) for current window.
- * @param status true to enable
- */
- public void setStatus(boolean status) {
- int currentWindowIndex = parameterStore.getCurrentWindowIndex();
- setStatus(currentWindowIndex,status);
- }
-
- /**
- * Set status (whether parameter is enabled) for given window).
- * @param windowIndex index of window
- * @param status true to enable
- */
- public void setStatus(int windowIndex, boolean status) {
- this.state[windowIndex].status = status;
- }
-
- /**
- * Get operator for current window.
- * @return operator
- */
- public String getOperator() {
- int currentWindowIndex = parameterStore.getCurrentWindowIndex();
- return getOperator(currentWindowIndex);
- }
-
- /**
- * Get operator for given window.
- * @param windowIndex index of window
- * @return operator
- */
- public String getOperator(int windowIndex) {
- return state[windowIndex].operator;
- }
-
- /**
- * Set operator for current window.
- * @param operator
- */
- public void setOperator(String operator) {
- int currentWindowIndex = parameterStore.getCurrentWindowIndex();
- setOperator(currentWindowIndex,operator);
- }
-
- /**
- * Set operator for given window.
- * @param windowIndex index of window
- * @param operator
- */
- public void setOperator(int windowIndex, String operator) {
- this.state[windowIndex].operator = operator;
- }
-
- /**
- * Copy values from one window to another.
- * @param from index of source window
- * @param to index of destination window
- */
- public void copy(int from, int to) {
- if (to!=from) state[to] = state[from].copy();
- }
-
- /**
- * Save current values for each window to be restored later.
- */
- public void saveDefaults() {
- int numWindows = state.length;
- for (int iWindow = 0; iWindow<numWindows; ++iWindow) {
- defaultState[iWindow] = state[iWindow].copy();
- }
- }
-
- /**
- * Restore values for each window from saved values.
- */
- public void restoreDefaults() {
- int numWindows = state.length;
- for (int iWindow = 0; iWindow<numWindows; ++iWindow) {
- state[iWindow] = defaultState[iWindow].copy();
- }
- }
-
- /**
- * This function is called for GLOBAL parameters to apply the value in all
- * windows.
- */
- public void globalize()
- {
- int currentWindowIndex = parameterStore.getCurrentWindowIndex();
- globalize(currentWindowIndex);
- }
-
- /**
- * This function is called for GLOBAL parameters to apply the value in all
- * windows.
- */
- public void globalize(int window)
- {
- int numWindows = state.length;
- for (int i = 0; i < numWindows; i++)
- copy(window, i);
- }
-}
\ No newline at end of file
diff --git a/graphics/AtlantisJava/src/atlantis/parameters/AParameterState.java b/graphics/AtlantisJava/src/atlantis/parameters/AParameterState.java
deleted file mode 100644
index 0c93ee31a72..00000000000
--- a/graphics/AtlantisJava/src/atlantis/parameters/AParameterState.java
+++ /dev/null
@@ -1,38 +0,0 @@
-package atlantis.parameters;
-
-/**
- * Encapsulate the state (value, status, operator) of a given parameter for a
- * single window.
- *
- * @author waugh
- *
- */
-public class AParameterState implements Cloneable {
- double value;
- boolean status;
- String operator = "";
-
- /**
- * Make a new AParameterState with default values.
- */
- AParameterState() {}
-
- /**
- * Make a new AParameterState that is a copy of another.
- * Other classes should use the public copy() method.
- * @param from the object to copy
- */
- private AParameterState(AParameterState from) {
- this.value = from.value;
- this.status = from.status;
- this.operator = from.operator;
- }
-
- /**
- * Make a new AParameterState that is a copy of this one.
- * @return copy
- */
- public AParameterState copy() {
- return new AParameterState(this);
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/parameters/AParameterSuperGroup.java b/graphics/AtlantisJava/src/atlantis/parameters/AParameterSuperGroup.java
deleted file mode 100644
index fe01d3b3d7b..00000000000
--- a/graphics/AtlantisJava/src/atlantis/parameters/AParameterSuperGroup.java
+++ /dev/null
@@ -1,241 +0,0 @@
-package atlantis.parameters;
-
-import java.util.ArrayList;
-import java.util.Collection;
-import java.util.HashMap;
-import java.util.List;
-import java.util.Map;
-
-import org.w3c.dom.NamedNodeMap;
-import org.w3c.dom.Node;
-import org.w3c.dom.NodeList;
-
-/**
- * A supergroup of parameters, i.e. a group of groups, corresponding to one of the
- * top-level tabs in the GUI, e.g. "Projections" or "Data".
- *
- * @author waugh
- *
- */
-public class AParameterSuperGroup implements AParameterChangeListener {
- private String name;
- private String toolTip;
- private int userLevel;
-
- private Map<String,AParametersGroup> parameterGroups = new HashMap<String,AParametersGroup>();
- private List<AParametersGroup> uiGroups = new ArrayList<AParametersGroup>();
- /** Keep track of enumerator parameters so we can tell them about new events. */
- private final List<AEnumeratorParameter> collectionParameters = new ArrayList<AEnumeratorParameter>();
-
- private List<AParameterChangeListener> parameterChangeListeners = new ArrayList<AParameterChangeListener>();
-
- private AParameterSuperGroup() {}
-
- static AParameterSuperGroup readSuperGroup(Node node, int applicationUserLevel) {
- AParameterSuperGroup superGroup = new AParameterSuperGroup();
- superGroup.name = node.getAttributes().getNamedItem("name").getNodeValue();
- superGroup.toolTip = node.getAttributes().getNamedItem("toolTip").getNodeValue();
- String sUserLevel = node.getAttributes().getNamedItem("userLevel").getNodeValue();
- superGroup.userLevel = Integer.parseInt(sUserLevel);
- superGroup.readGroups(node,applicationUserLevel);
- return superGroup;
- }
-
- /**
- * Populate the lists of parameter groups and UI groups.
- * @param superGroupNode
- */
- private void readGroups(Node superGroupNode, int applicationUserLevel) {
- NodeList groups = superGroupNode.getChildNodes();
- for (int i = 0; i < groups.getLength(); i++)
- {
- Node group = groups.item(i);
- if (group.getNodeType() == Node.ELEMENT_NODE)
- {
- // here we have a <Group> element and create an AParametersGroup object from it
- AParametersGroup g = readGroup(group);
-
- String gName = g.getGroupName();
- if (parameterGroups.containsKey(gName))
- throw new Error("Duplicate definition of group " + gName);
- parameterGroups.put(gName, g);
- int guiUsage = g.getUIUsage();
-
- if ( ( (guiUsage == AParametersGroup.TABLE) ||
- (guiUsage == AParametersGroup.PROJECTION)
- || (guiUsage == AParametersGroup.BRAIN_TEST)
- ) && (g.getUserLevel() <= userLevel))
- uiGroups.add(g);
- }
- }
-
- }
-
- private AParametersGroup readGroup(Node group)
- {
- // first we read all the attributes
- NamedNodeMap attributes=group.getAttributes();
- String groupName=attributes.getNamedItem("name").getNodeValue();
- String screenName=attributes.getNamedItem("sname").getNodeValue();
- String guiUsageAttribut=attributes.getNamedItem("guiUsage").getNodeValue();
- String scopeAttribut=attributes.getNamedItem("scope").getNodeValue();
- int ul=Integer.parseInt(attributes.getNamedItem("userLevel").getNodeValue());
- String groupToolTip=attributes.getNamedItem("toolTip").getNodeValue();
-
- // set guiUsage value for this group
- int guiUsage;
- if(guiUsageAttribut.equals("TABLE"))
- guiUsage=AParametersGroup.TABLE;
- else if(guiUsageAttribut.equals("PROJECTION"))
- guiUsage=AParametersGroup.PROJECTION;
- else if(guiUsageAttribut.equals("BRAIN_TEST"))
- guiUsage=AParametersGroup.BRAIN_TEST;
- else
- guiUsage=AParametersGroup.NO_USE;
-
- // set scope value for this group
- int scope;
- if(scopeAttribut.equals("LOCAL"))
- scope=AParameter.LOCAL;
- else if(scopeAttribut.equals("GLOBAL"))
- scope=AParameter.GLOBAL;
- else
- scope=AParameter.GLOBAL;
-
- // create an AParametersGroup object based on the attributes
- AParametersGroup thisGroup=new AParametersGroup(groupName, screenName, guiUsage, scope, ul, groupToolTip);
-
- // report error if no parameters in this group
- NodeList childrens=group.getChildNodes();
- if(childrens==null) throw new Error("this group contains no parameters");
- int childrensCount=childrens.getLength();
- if(childrensCount==0) throw new Error("this group contains no parameters");
-
- // read all the parameters of this group recursively
- for(int i=0; i<childrensCount; i++)
- {
- Node child=childrens.item(i);
- if(child.getNodeType()==Node.ELEMENT_NODE)
- {
- // for each parameter, create an object (either ACommnad or AParameter)
- // and add it into the to be returned AParametersGroup object
- String childName=child.getNodeName();
- if(childName.equals("Command")) {
- ACommand c=readCommand(child);
- if(c!=null) thisGroup.add(c);
- }
- else {
- AParameter parameter = AParameterConfigReader.readParameter(child, scope);
- parameter.addParameterChangeListener(this);
- thisGroup.add(parameter);
- if (parameter instanceof AEnumeratorParameter &&
- parameter.getScreenName().endsWith("Collections")) {
- collectionParameters.add((AEnumeratorParameter)parameter);
- }
- }
- }
- }
-
- return thisGroup;
- }
-
-
-
- private ACommand readCommand(Node commandNode)
- {
- NamedNodeMap attributes=commandNode.getAttributes();
-
- String name=attributes.getNamedItem("name").getNodeValue();
- String command=attributes.getNamedItem("command").getNodeValue();
- String toolTip=attributes.getNamedItem("toolTip").getNodeValue();
- String userLevel=attributes.getNamedItem("ul").getNodeValue();
- if(Integer.parseInt(userLevel)<=this.userLevel)
- return new ACommand(name, command, toolTip);
- else
- return null;
- }
-
- /**
- * Get the name of the supergroup.
- * @return the name
- */
- public String getName() {return name;}
-
- /**
- * Get the tool tip for this supergroup.
- * @return the tool tip
- */
- public String getToolTip() {return toolTip;}
-
- /**
- * Get the user level of this supergroup.
- * @return the user level
- */
- public int getUserLevel() {return userLevel;}
-
- /**
- * Get parameter group with given name.
- * @param name name of group
- * @return parameter group
- */
- public AParametersGroup getGroup(String name) {return parameterGroups.get(name);}
-
- /**
- * Get the parameter groups that are displayed in the UI in the current user level.
- * @return list of parameter groups
- */
- public List<AParametersGroup> getUIGroups() {return uiGroups;}
-
- /**
- * Tell the listeners that a parameter has changed.
- */
- @Override
- public void parameterChanged(AParameter parameter) {
- for (AParameterChangeListener listener : parameterChangeListeners) {
- listener.parameterChanged(parameter);
- }
- }
-
- public Map<? extends String, ? extends AParametersGroup> getParameterGroups() {
- return parameterGroups;
- }
-
- public Collection<? extends AEnumeratorParameter> getCollectionParameters() {
- return collectionParameters;
- }
-
- /**
- * Add a listener to be informed of parameter changes.
- *
- * @param listener
- */
- public void addParameterChangeListener(AParameterChangeListener listener) {
- this.parameterChangeListeners.add(listener);
- }
-
- /**
- * Restore all groups in supergroup to defaults.
- */
- public void restoreDefaults() {
- for (AParametersGroup group : parameterGroups.values()) {
- group.restoreDefaults();
- }
- }
-
- /**
- * Copy parameters from one window to another.
- * @param sourceName name of source window
- * @param destName name of destination window
- */
- public void copyParameters(String sourceName, String destName) {
- for (AParametersGroup group : parameterGroups.values()) {
- group.copyParameters(sourceName, destName);
- }
- }
-
- public void resolveLinkParameters() {
- for (AParametersGroup group : parameterGroups.values()) {
- group.resolveLinkParameters();
- }
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/parameters/AParameterUtilities.java b/graphics/AtlantisJava/src/atlantis/parameters/AParameterUtilities.java
deleted file mode 100644
index 7dada86fe69..00000000000
--- a/graphics/AtlantisJava/src/atlantis/parameters/AParameterUtilities.java
+++ /dev/null
@@ -1,102 +0,0 @@
-/**
- *
- */
-package atlantis.parameters;
-
-import atlantis.utils.AMath;
-
-/**
- * Mathematical utility methods that act on Parameters.
- * Moved from atlantis.utils.AMath to reduce dependencies of utils on other packages.
- *
- * @author waugh
- *
- */
-public class AParameterUtilities {
-
- private final static APar parameterStore = APar.instance();
- private final static AParameter xVertexPar = parameterStore.get("Event", "XVtx");
- private final static AParameter yVertexPar = parameterStore.get("Event", "YVtx");
- private final static AParameter zVertexPar = parameterStore.get("Event", "ZVtx");
-
- /**
- * Get coordinates of event vertex.
- *
- * @return (x,y,z) of vertex
- */
- public static double[] getPrimaryVertex()
- {
- double[] primaryVertex = new double[3];
- primaryVertex[0] = parameterStore.get("Event", "XVtx").getD();
- primaryVertex[1] = parameterStore.get("Event", "YVtx").getD();
- primaryVertex[2] = parameterStore.get("Event", "ZVtx").getD();
- return primaryVertex;
- }
-
- /**
- * Returns phi with respect to the primary vertex.
- * @param x double x coordinate
- * @param y double y coordinate
- * @return double phi
- */
- public static double phi(double x, double y) {
- double phi = Math.atan2(y-yVertexPar.getD(), x-xVertexPar.getD());
- if (phi < 0) phi += 2.*Math.PI;
- return Math.toDegrees(phi);
- }
-
- /**
- * Returns eta with respect to the primary vertex.
- * @param z double z coordinate
- * @param rho double rho coordinate
- * @return double eta
- */
- public static double eta(double z, double rho)
- {
- return AMath.etaAbs(z - zVertexPar.getD(), rho);
- }
-
- public static double getPhiStereo(double rho, double phi, double z)
- {
- AParameter stereoAnglePar = parameterStore.get("SiCluster", "Stereo");
- if(!stereoAnglePar.getStatus())
- {
- return phi;
- }
- double stereoAngle = stereoAnglePar.getI() * 0.04;
- return phi + stereoAngle * (z-parameterStore.get("Event", "ZVtx").getD()) / rho;
- }
-
- /**
- * Get the sign of the rho coordinate based on the x and y coordinates and
- * the phi value set by the user.
- * @param x double x coordinate
- * @param y double y coordinate
- * @return int sign of rho (-1 or +1)
- */
- public static int getRhoSign(double x, double y) {
- return getRhoSign(Math.atan2(y, x));
- }
-
- /**
- * Get the sign of the rho coordinate based on the phi coordinate and
- * the phi value set by the user.
- * @param phi double phi coordinate
- * @return int sign of rho (-1 or +1)
- */
- private static int getRhoSign(double phi) {
- int sign;
- if (phi < 0.) phi += 2.*Math.PI;
-
- double phiMid = Math.toRadians(parameterStore.get("RZ", "Phi").getD());
- double phiDiff = Math.abs(phi-phiMid);
-
- if(phiDiff <= Math.PI/2.|| phiDiff > 3*Math.PI/2.) {
- sign = 1;
- } else {
- sign = -1;
- }
- return sign;
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/parameters/AParametersGroup.java b/graphics/AtlantisJava/src/atlantis/parameters/AParametersGroup.java
deleted file mode 100755
index eeadb9d3183..00000000000
--- a/graphics/AtlantisJava/src/atlantis/parameters/AParametersGroup.java
+++ /dev/null
@@ -1,157 +0,0 @@
-package atlantis.parameters;
-
-import atlantis.canvas.ACanvas;
-import java.util.*;
-
-/**
- * This class is used to store a set of parameters. Provides functions for
- * fast searching of a parameter by its name.
- */
-public class AParametersGroup {
- public static final int NO_USE=0;
- public static final int TABLE=1;
- public static final int PROJECTION=2;
- public static final int BRAIN_TEST=3;
-
- private String name;
- private String screenName;
- private String toolTip;
- private int scope;
- private int guiUsage;
- private int userLevel;
-
- private Vector<AParameter> parametersVector = new Vector<AParameter>();
- private HashMap<String, AParameter> parametersMap = new HashMap<String, AParameter>();
- private Vector<ACommand> commandsVector = new Vector<ACommand>();
-
- public AParametersGroup(String name, String screenName, int guiUsage,
- int scope, int userLevel, String toolTip) {
-
- this.name=name;
-
- if(!screenName.trim().equals(""))
- this.screenName=screenName;
- else
- this.screenName=name;
-
- this.guiUsage=guiUsage;
- this.scope=scope;
- this.userLevel=userLevel;
- this.toolTip=toolTip;
- }
-
- public void restoreDefaults() {
- Enumeration<AParameter> parameters = parametersVector.elements();
- while(parameters.hasMoreElements()) {
- AParameter p = parameters.nextElement();
- if(p instanceof AAbstractParameter)
- ((AAbstractParameter)p).restoreDefaults();
- }
- }
-
-
- private void addToMap(AParameter p) {
- if(parametersMap.containsKey(p.getName()))
- throw new Error("Duplicate definition of parameter full name "+p.getName());
-
- parametersMap.put(p.getName(), p);
- }
-
- public void add(AParameter p) {
- parametersVector.addElement(p);
- if(!(p instanceof ALinkParameter))
- addToMap(p);
- }
-
- public void add(ACommand c) {
- for(int i=0; i<commandsVector.size(); i++) {
- ACommand command = commandsVector.elementAt(i);
- if(command.getName().equals(c.getName()))
- throw new Error("Duplicate definition of command "+c.getName());
- }
- commandsVector.addElement(c);
- }
-
- public int getScope() {
- return scope;
- }
-
- public String getGroupName() {
- return name;
- }
-
- public String getScreenName() {
- return screenName;
- }
-
- public String getToolTip() {
- return toolTip;
- }
-
- public int getUIUsage() {
- return guiUsage;
- }
-
- public int getUserLevel() {
- return userLevel;
- }
-
- public ACommand[] getCommands() {
- ACommand[] commands=new ACommand[commandsVector.size()];
-
- for(int i=0; i<commands.length; i++)
- commands[i]=commandsVector.elementAt(i);
-
- return commands;
- }
-
- public Vector<AParameter> getParameters(int userLevel) {
- Vector<AParameter> v=new Vector<AParameter>(parametersVector.size());
-
- for(int i=0; i<parametersVector.size(); i++) {
- AParameter p = parametersVector.elementAt(i);
- if(p.getUserLevel()<=userLevel)
- v.addElement(p);
- }
-
- return v;
- }
-
- public AParameter getParameter(String name) {
- if(parametersMap.get(name)!=null)
- return parametersMap.get(name);
- // if under group "Data", should find the parameter in the whole tree
- else if(parametersMap.get("Status")!=null){
- return ((AStatusRootParameter)parametersMap.get("Status")).getParameter(name);
- }
- else
- return null;
- }
-
- /**
- * Copy parameters from one window to another.
- * @param sourceName name of source window
- * @param destName name of destination window
- */
- public void copyParameters(String sourceName, String destName) {
- int source=ACanvas.getCanvas().getWindow(sourceName).getIndex();
- int dest=ACanvas.getCanvas().getWindow(destName).getIndex();
-
- for(int i=0; i<parametersVector.size(); i++) {
- AParameter p = parametersVector.elementAt(i);
- if(p.getScope()==AParameter.LOCAL)
- p.copy(source, dest);
- }
- }
-
- public void resolveLinkParameters() {
- for(int i=0; i<parametersVector.size(); i++) {
- AParameter p = parametersVector.elementAt(i);
- if(p instanceof ALinkParameter) {
- ((ALinkParameter)p).solveLink();
- addToMap(p);
- }
- }
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/parameters/AStatusGroupParameter.java b/graphics/AtlantisJava/src/atlantis/parameters/AStatusGroupParameter.java
deleted file mode 100755
index 59bc40f1fc2..00000000000
--- a/graphics/AtlantisJava/src/atlantis/parameters/AStatusGroupParameter.java
+++ /dev/null
@@ -1,213 +0,0 @@
-package atlantis.parameters;
-
-import org.w3c.dom.Node;
-import org.w3c.dom.NodeList;
-import javax.swing.JComponent;
-import java.util.ArrayList;
-import java.awt.Color;
-import hep.wired.util.TristateCheckBox;
-
-import atlantis.gui.ACheckNode;
-import atlantis.gui.ACheckBox;
-
-/**
- * Created on 16 March 2005, 16:15
- *
- * @author Qiang Lu
- */
-public class AStatusGroupParameter extends AAbstractParameter
-{
- private ArrayList<AParameter> parameterNodeList;
-
- private ACheckNode statusGroupNode;
-
- /** Creates a new instance of AStatusGroupParameter */
- AStatusGroupParameter(Node statusGroup, String name, String screenName, String toolTip, int userLevel, int scope)
- {
- super(name, screenName, toolTip, AParameter.NO_VALUE, 0, null, null, false, false,
- false, userLevel, scope, AAbstractParameter.NOTHING);
-
- // get child element of statusGroup
- NodeList childrens = statusGroup.getChildNodes();
- // report error if no parameters
- if (childrens == null)
- throw new Error("StatusGroup element contains no parameters");
- int childrensCount = childrens.getLength();
- if (childrensCount == 0)
- throw new Error("StatusGroup element contains no parameters");
-
- // create an AParameter object for each node under statusGroup
- // and add them into parameterNodeList
- parameterNodeList = new ArrayList<AParameter>();
- for (int i = 0; i < childrensCount; i++)
- {
- Node child = childrens.item(i);
-
- if (child.getNodeType() == Node.ELEMENT_NODE)
- {
- // here we have a <StatusGroup> or <Status> element
- parameterNodeList.add(AParameterConfigReader.readParameter(child, scope));
- }
- }
- }
-
- public void initialize()
- {
- super.initialize();
-
- // create the tree node using the <StatusGroup> element
- TristateCheckBox groupCheckBox = new TristateCheckBox(screenName);
- groupCheckBox.setBackground(new Color(204, 204, 204));
- if (getScope() == LOCAL)
- groupCheckBox.setForeground(Color.black);
- else
- groupCheckBox.setForeground(Color.blue);
-
- groupCheckBox.setToolTipText(toolTip);
- statusGroupNode = new ACheckNode(groupCheckBox, false, ACheckNode.MULTI_SELECTION, this);
-
- for (AParameter aNodeParameter : parameterNodeList)
- {
- aNodeParameter.initialize();
- if (aNodeParameter instanceof AStatusParameter)
- {
- if (aNodeParameter.getUserLevel() <= APar.instance().getUserLevel())
- {
- ACheckBox statusCheckBox = ((AStatusParameter) aNodeParameter).getCheckBox();
- ACheckNode aNode = new ACheckNode(statusCheckBox, statusCheckBox.isSelected(), ACheckNode.SINGLE_SELECTION, aNodeParameter);
- statusGroupNode.add(aNode);
- }
- }
- else if (aNodeParameter instanceof AStatusGroupParameter)
- {
- statusGroupNode.add(((AStatusGroupParameter) aNodeParameter).getCheckNode());
- }
- }
- }
-
- public JComponent getValueComponent()
- {
- return null;
- }
-
- public ACheckNode getCheckNode()
- {
- return statusGroupNode;
- }
-
- ArrayList<AParameter> getParameterList()
- {
- return parameterNodeList;
- }
-
- public AParameter getParameter(String name)
- {
- for (AParameter aNodeParameter : parameterNodeList)
- {
- if (aNodeParameter instanceof AStatusParameter)
- {
- if (aNodeParameter.getName().equals(name))
- return aNodeParameter;
- }
- else if (((AStatusGroupParameter) aNodeParameter).getParameter(name) != null)
- {
- return ((AStatusGroupParameter) aNodeParameter).getParameter(name);
- }
- }
- return null;
- }
-
- public AParameter getGroupParameter(String name)
- {
- if(getName().equals(name))
- return this;
- for (AParameter aNodeParameter : parameterNodeList)
- {
- if (aNodeParameter instanceof AStatusGroupParameter)
- {
- if (((AStatusGroupParameter) aNodeParameter).getGroupParameter(name) != null)
- {
- return ((AStatusGroupParameter) aNodeParameter).getGroupParameter(name);
- }
- }
- }
- return null;
- }
-
- public boolean getStatus()
- {
- return statusGroupNode.isSelected();
- }
-
- public void setStatus(boolean status)
- {
- for (AParameter aNodeParameter : parameterNodeList)
- {
- aNodeParameter.setStatus(status);
- }
- }
-
- public void refresh()
- {
- _refresh();
- fireParameterChanged();
- }
-
- public void setD(double v)
- {
- throw new IllegalArgumentException("StatusGroupParameter hase no value");
- }
-
- public void setI(int v)
- {
- throw new IllegalArgumentException("StatusGroupParameter hase no value");
- }
-
- public void saveChildrenDefaults()
- {
- for (AParameter aNodeParameter : parameterNodeList)
- {
- AAbstractParameter aNodeAbstractParameter = (AAbstractParameter) aNodeParameter;
- if(aNodeAbstractParameter instanceof AStatusGroupParameter)
- ((AStatusGroupParameter)aNodeAbstractParameter).saveChildrenDefaults();
- else
- ((AStatusParameter)aNodeAbstractParameter).saveDefaults();
- }
- }
-
- public void restoreDefaults()
- {
- super.restoreDefaults();
- for (AParameter aNodeParameter : parameterNodeList)
- {
- AAbstractParameter aNodeAbstractParameter = (AAbstractParameter) aNodeParameter;
- aNodeAbstractParameter.restoreDefaults();
- }
- }
-
- public void copy(int from, int to)
- {
- for (AParameter aNodeParameter : parameterNodeList)
- {
- AAbstractParameter aNodeAbstractParameter = (AAbstractParameter) aNodeParameter;
- aNodeAbstractParameter.copy(from, to);
- }
- }
-
- public String getDifferences(String groupName)
- {
- StringBuffer ret = new StringBuffer();
-
- for (AParameter aNodeParameter : parameterNodeList)
- {
- AAbstractParameter aNodeAbstractParameter = (AAbstractParameter) aNodeParameter;
- if(aNodeAbstractParameter instanceof AStatusGroupParameter)
- ret.append(((AStatusGroupParameter)aNodeAbstractParameter).getDifferences(groupName));
- else
- ret.append(aNodeAbstractParameter.getDifferences(groupName));
- }
-
- return ret.toString();
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/parameters/AStatusParameter.java b/graphics/AtlantisJava/src/atlantis/parameters/AStatusParameter.java
deleted file mode 100755
index ad42a168db9..00000000000
--- a/graphics/AtlantisJava/src/atlantis/parameters/AStatusParameter.java
+++ /dev/null
@@ -1,58 +0,0 @@
-package atlantis.parameters;
-
-import javax.swing.JLabel;
-import javax.swing.LookAndFeel;
-import javax.swing.JComponent;
-
-/**
- * A parameter representing an on/off value. Corresponds to an ACheckBox in the GUI.
- */
-public class AStatusParameter extends AAbstractParameter
-{
- private JLabel valueLabel;
-
- public AStatusParameter(String name, String screenName, String toolTip,
- boolean status, int userLevel, int scope)
- {
- super(name, screenName, toolTip, NO_VALUE, 0, null, null, true,
- status, false, userLevel, scope, NOTHING);
- }
-
-
- public void setD(double v)
- {
- throw new IllegalArgumentException("StatusParameter has no value");
- }
-
-
- public void setI(int v)
- {
- throw new IllegalArgumentException("StatusParameter has no value");
- }
-
-
- public void initialize()
- {
- super.initialize();
- valueLabel = new JLabel();
- valueLabel.setOpaque(true);
- valueLabel.setToolTipText(toolTip);
- LookAndFeel.installColorsAndFont(valueLabel, "CheckBox.background",
- "CheckBox.foreground",
- "CheckBox.font");
- }
-
-
- public JComponent getValueComponent()
- {
- return valueLabel;
- }
-
-
- public void refresh()
- {
- _refresh();
- fireParameterChanged();
- }
-
-} // class AStatusParameter =================================================
diff --git a/graphics/AtlantisJava/src/atlantis/parameters/AStatusRootParameter.java b/graphics/AtlantisJava/src/atlantis/parameters/AStatusRootParameter.java
deleted file mode 100755
index fbbf4f40448..00000000000
--- a/graphics/AtlantisJava/src/atlantis/parameters/AStatusRootParameter.java
+++ /dev/null
@@ -1,435 +0,0 @@
-package atlantis.parameters;
-
-import hep.wired.util.TristateCheckBox;
-
-import java.awt.Color;
-import java.awt.Component;
-import java.awt.event.ActionEvent;
-import java.awt.event.ActionListener;
-import java.awt.event.MouseAdapter;
-import java.awt.event.MouseEvent;
-import java.util.ArrayList;
-import java.util.Iterator;
-
-import javax.swing.JComponent;
-import javax.swing.JPopupMenu;
-import javax.swing.JTree;
-import javax.swing.ToolTipManager;
-import javax.swing.tree.DefaultTreeModel;
-import javax.swing.tree.TreePath;
-
-import org.w3c.dom.Node;
-import org.w3c.dom.NodeList;
-
-import atlantis.utils.AUtilities;
-import atlantis.gui.ACheckBox;
-import atlantis.gui.ACheckNode;
-import atlantis.gui.AParametersTable;
-import atlantis.gui.ATreeCellRenderer;
-
-/**
- * AStatusRootParameter.java
- *
- * Created on 14 March 2005, 17:49
- *
- * @author Qiang Lu
- */
-public class AStatusRootParameter extends AAbstractParameter
-{
- private ArrayList<AParameter> parameterNodeList;
-
- private JTree statusTree;
-
- private ACheckNode statusRootNode;
-
- /** Creates a new instance of AStatusGroupParameter */
- AStatusRootParameter(Node statusRoot, String name, String screenName, String toolTip, int userLevel, int scope)
- {
- super(name, screenName, toolTip, AParameter.NO_VALUE, 0, null, null, false, false,
- false, userLevel, scope, AAbstractParameter.NOTHING);
- // get child element of statusRoot
- NodeList childrens = statusRoot.getChildNodes();
- // report error if no parameters
- if (childrens == null)
- throw new Error("this group contains no parameters");
- int childrensCount = childrens.getLength();
- if (childrensCount == 0)
- throw new Error("this group contains no parameters");
-
- // create an AParameter object for each node under statusRoot
- // and add them into parameterNodeList
- parameterNodeList = new ArrayList<AParameter>();
- for (int i = 0; i < childrensCount; i++)
- {
- Node child = childrens.item(i);
-
- if (child.getNodeType() == Node.ELEMENT_NODE)
- {
- // here we have a <StatusGroup> or <Status> element
- parameterNodeList.add(AParameterConfigReader.readParameter(child, scope));
- }
- }
- }
-
- public void initialize()
- {
- super.initialize();
-
- // create the root node of the tree using the <StatusRoot> element
- TristateCheckBox rootCheckBox = new TristateCheckBox(screenName);
- rootCheckBox.setBackground(new Color(204, 204, 204));
- if (getScope() == LOCAL)
- rootCheckBox.setForeground(Color.black);
- else
- rootCheckBox.setForeground(Color.blue);
-
- rootCheckBox.setToolTipText(toolTip);
- statusRootNode = new ACheckNode(rootCheckBox, false, ACheckNode.MULTI_SELECTION, this);
- for (AParameter aNodeParameter : parameterNodeList)
- {
- aNodeParameter.initialize();
- if (aNodeParameter instanceof AStatusParameter)
- {
- if (aNodeParameter.getUserLevel() <= APar.instance().getUserLevel())
- {
- ACheckBox statusCheckBox = ((AStatusParameter) aNodeParameter).getCheckBox();
- ACheckNode aNode = new ACheckNode(statusCheckBox, statusCheckBox.isSelected(), ACheckNode.SINGLE_SELECTION, aNodeParameter);
- statusRootNode.add(aNode);
- }
- }
- else if (aNodeParameter instanceof AStatusGroupParameter)
- {
- statusRootNode.add(((AStatusGroupParameter) aNodeParameter).getCheckNode());
- }
- }
-
- statusTree = new JTree(statusRootNode);
- statusTree.setBackground(new Color(204, 204, 204));
- statusTree.setCellRenderer(new ATreeCellRenderer());
- statusTree.addMouseListener(new NodeSelectionListener(statusTree));
- ToolTipManager.sharedInstance().registerComponent(statusTree);
- }
-
- public JComponent getValueComponent()
- {
- return null;
- }
-
- public JComponent getNameComponent()
- {
- return statusTree;
- }
-
- ArrayList<AParameter> getParameterList()
- {
- return parameterNodeList;
- }
-
- public AParameter getParameter(String name)
- {
- for (AParameter aNodeParameter : parameterNodeList)
- {
- if (aNodeParameter instanceof AStatusParameter)
- {
- if (aNodeParameter.getName().equals(name))
- return aNodeParameter;
- }
- else if (((AStatusGroupParameter) aNodeParameter).getParameter(name) != null)
- {
- return ((AStatusGroupParameter) aNodeParameter).getParameter(name);
- }
- }
- return null;
- }
-
- public AParameter getGroupParameter(String name)
- {
- if(!isInitialized())
- initialize();
-
- if(getName().equals(name))
- return this;
- for (AParameter aNodeParameter : parameterNodeList)
- {
- if (aNodeParameter instanceof AStatusGroupParameter)
- {
- if (((AStatusGroupParameter) aNodeParameter).getGroupParameter(name) != null)
- {
- return ((AStatusGroupParameter) aNodeParameter).getGroupParameter(name);
- }
- }
- }
- return null;
- }
-
- public boolean getStatus()
- {
- return statusRootNode.isSelected();
- }
-
- public void setStatus(boolean status)
- {
- for (AParameter aNodeParameter : parameterNodeList)
- {
- aNodeParameter.setStatus(status);
- }
- }
-
- public void refresh()
- {
- _refresh();
- fireParameterChanged();
- }
-
- public void setD(double v)
- {
- throw new IllegalArgumentException("StatusRootParameter hase no value");
- }
-
- public void setI(int v)
- {
- throw new IllegalArgumentException("StatusRootParameter hase no value");
- }
-
- public void saveChildrenDefaults()
- {
- for (AParameter aNodeParameter : parameterNodeList)
- {
- AAbstractParameter aNodeAbstractParameter = (AAbstractParameter) aNodeParameter;
- if(aNodeAbstractParameter instanceof AStatusGroupParameter)
- ((AStatusGroupParameter)aNodeAbstractParameter).saveChildrenDefaults();
- else
- ((AStatusParameter)aNodeAbstractParameter).saveDefaults();
- }
- }
-
- public void restoreDefaults()
- {
- for (AParameter aNodeParameter : parameterNodeList)
- {
- AAbstractParameter aNodeAbstractParameter = (AAbstractParameter) aNodeParameter;
- aNodeAbstractParameter.restoreDefaults();
- }
- if(statusTree != null)
- {
- for (int i = 1; i < statusTree.getRowCount(); i++)
- statusTree.collapseRow(i);
- }
- }
-
- public void copy(int from, int to)
- {
- for (AParameter aNodeParameter : parameterNodeList)
- {
- AAbstractParameter aNodeAbstractParameter = (AAbstractParameter) aNodeParameter;
- aNodeAbstractParameter.copy(from, to);
- }
- }
-
- public String getDifferences(String groupName)
- {
- StringBuffer ret = new StringBuffer();
-
- for (AParameter aNodeParameter : parameterNodeList)
- {
- AAbstractParameter aNodeAbstractParameter = (AAbstractParameter) aNodeParameter;
- if(aNodeAbstractParameter instanceof AStatusGroupParameter)
- ret.append(((AStatusGroupParameter)aNodeAbstractParameter).getDifferences(groupName));
- else
- ret.append(((AStatusParameter)aNodeAbstractParameter).getDifferences(groupName));
- }
-
- return ret.toString();
- }
-
- public class NodeSelectionListener extends MouseAdapter
- {
- private JTree tree;
-
- private int offsetX;
- private int offsetY;
-
- NodeSelectionListener(JTree tree)
- {
- this.tree = tree;
- offsetX = 0;
- offsetY = 0;
- }
-
- public void setOffset(int x, int y)
- {
- offsetX = x;
- offsetY = y;
- }
-
- public int getOffsetX()
- {
- return offsetX;
- }
-
- public int getOffsetY()
- {
- return offsetY;
- }
-
- public void mousePressed(MouseEvent e)
- {
- if (AUtilities.isRightMouseButton(e))
- {
- AParameter clickedPar = null;
- int x = e.getX();
- int y = e.getY();
- int row = tree.getRowForLocation(x, y);
- TreePath path = tree.getPathForRow(row);
- if (path != null)
- {
- Object clickedNode = path.getLastPathComponent();
- if (clickedNode instanceof ACheckNode)
- {
- ACheckNode node = (ACheckNode) clickedNode;
- clickedPar = node.getParameter();
- }
-
- final AParameter effectPar = clickedPar;
- if(effectPar instanceof AStatusParameter)
- {
- JPopupMenu popupMenu = new JPopupMenu();
- if (effectPar.getScope() == AParameter.LOCAL)
- {
- popupMenu.add(AParametersTable.SET_GLOBAL).addActionListener(new ActionListener()
- {
- public void actionPerformed(ActionEvent e)
- {
- effectPar.changeScope(AParameter.GLOBAL);
- refresh();
- }
- });
- }
- else
- {
- popupMenu.add(AParametersTable.SET_LOCAL).addActionListener(new ActionListener()
- {
- public void actionPerformed(ActionEvent e)
- {
- effectPar.changeScope(AParameter.LOCAL);
- refresh();
- }
- });
- }
- if (tree.isShowing())
- popupMenu.show(tree, e.getX(), e.getY());
- else
- // when e.getSource() is the table
- popupMenu.show((Component) e.getSource(), e.getX() + getOffsetX(), e.getY() + getOffsetY());
- }
- else
- {
- popupGroupScopeMenu(effectPar, e);
- }
- }
- }
- }
-
- // groupPar is either AStatusRootParameter or AStatusGroupParameter
- private final void changeGroupScopes(AParameter groupPar, int scope)
- {
- Iterator<AParameter> it;
- if(groupPar instanceof AStatusRootParameter)
- it = ((AStatusRootParameter) groupPar).getParameterList().iterator();
- else
- it = ((AStatusGroupParameter) groupPar).getParameterList().iterator();
- while (it.hasNext())
- {
- AParameter aPar = it.next();
- // aPar is either AStatusGroupParameter or AStatusParameter
- if(aPar instanceof AStatusGroupParameter)
- changeGroupScopes(aPar, scope);
- else
- aPar.changeScope(scope);
- }
- }
-
- // groupPar is either AStatusRootParameter or AStatusGroupParameter
- private void popupGroupScopeMenu(AParameter groupPar, MouseEvent e)
- {
- final AParameter tmpPar = groupPar;
- JPopupMenu popupMenu = new JPopupMenu();
- popupMenu.add(AParametersTable.SET_ALL_LOCAL).addActionListener(
- new ActionListener()
- {
- public void actionPerformed(ActionEvent e)
- {
- changeGroupScopes(tmpPar, AParameter.LOCAL);
- refresh();
- }
- });
- popupMenu.add(AParametersTable.SET_ALL_GLOBAL).addActionListener(
- new ActionListener()
- {
- public void actionPerformed(ActionEvent e)
- {
- changeGroupScopes(tmpPar, AParameter.GLOBAL);
- refresh();
- }
- });
- if (tree.isShowing())
- popupMenu.show(tree, e.getX(), e.getY());
- else
- // when e.getSource() is the table
- popupMenu.show((Component) e.getSource(), e.getX() + getOffsetX(), e.getY() + getOffsetY());
- }
-
- public void mouseClicked(MouseEvent e)
- {
- if (AUtilities.isRightMouseButton(e))
- {
- return;
- }
- int x = e.getX();
- int y = e.getY();
- int row = tree.getRowForLocation(x, y);
- TreePath path = tree.getPathForRow(row);
- if (path != null)
- {
- Object clickedNode = path.getLastPathComponent();
- if (clickedNode instanceof ACheckNode)
- {
- ACheckNode node = (ACheckNode) clickedNode;
- boolean newSelectionFlag;
- if (node.getParameter() instanceof AStatusParameter)
- newSelectionFlag = !node.isSelected();
- else
- {
- TristateCheckBox.State currentState = ((TristateCheckBox) node.getUserObject()).getState();
- if (currentState == TristateCheckBox.NOT_SELECTED)
- newSelectionFlag = true;
- else
- newSelectionFlag = false;
- }
- node.getClicked(newSelectionFlag, true);
-
- if ((node.getSelectionMode() == ACheckNode.MULTI_SELECTION))
- {
- if (node.isSelected())
- {
- tree.expandPath(path);
- }
- else
- {
- if (row != 0)
- tree.collapsePath(path);
- }
- }
- ((DefaultTreeModel) tree.getModel()).nodeChanged(node);
- // I need revalidate if node is root. but why?
- if (row == 0)
- {
- tree.revalidate();
- tree.repaint();
- }
- }
- }
- }
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/parameters/package.html b/graphics/AtlantisJava/src/atlantis/parameters/package.html
deleted file mode 100644
index 8572821c5f1..00000000000
--- a/graphics/AtlantisJava/src/atlantis/parameters/package.html
+++ /dev/null
@@ -1,7 +0,0 @@
-<html>
-<head></head>
-<body>
-<p>Application parameter store where APar and AParameter are the main
- classes.</p>
-</body>
-</html>
diff --git a/graphics/AtlantisJava/src/atlantis/projection/AProjection.java b/graphics/AtlantisJava/src/atlantis/projection/AProjection.java
deleted file mode 100755
index 2cd72969cf8..00000000000
--- a/graphics/AtlantisJava/src/atlantis/projection/AProjection.java
+++ /dev/null
@@ -1,32 +0,0 @@
-package atlantis.projection;
-
-
-import java.awt.event.ActionListener;
-import atlantis.canvas.AWindow;
-import atlantis.event.AEventManager;
-import atlantis.parameters.APar;
-
-import javax.swing.*;
-import java.awt.*;
-
-
-public abstract class AProjection implements ActionListener {
-
- protected static APar parameterStore = APar.instance();
- protected static AEventManager eventManager = AEventManager.instance();
-
- public abstract String getName();
- public abstract String getScreenName();
- public abstract void paint(AWindow window, Graphics g);
-
- public abstract JMenuItem[] getPopupItems();
-
- // next 4/5 needed for normal 2d projections, not for others e.g. Braintests
- // should be changed at some point.....
- public abstract String getXLabel();
- public abstract String getYLabel();
- public abstract String getXUnits();
- public abstract String getYUnits();
- public abstract void setScales();
- public abstract boolean processLocalCommand(String name);
-}
diff --git a/graphics/AtlantisJava/src/atlantis/projection/AProjection2D.java b/graphics/AtlantisJava/src/atlantis/projection/AProjection2D.java
deleted file mode 100755
index d7a12dd4ead..00000000000
--- a/graphics/AtlantisJava/src/atlantis/projection/AProjection2D.java
+++ /dev/null
@@ -1,348 +0,0 @@
-package atlantis.projection;
-
-import java.awt.Color;
-import java.awt.Dimension;
-import java.awt.Graphics;
-import java.awt.Rectangle;
-import java.awt.event.ActionEvent;
-import java.awt.geom.Point2D;
-import java.util.List;
-import java.util.ArrayList;
-
-import javax.swing.JMenuItem;
-
-import atlantis.canvas.ACanvas;
-import atlantis.canvas.AWindow;
-import atlantis.data.ACalorimeterData;
-import atlantis.data.ADHelix;
-import atlantis.event.AData;
-import atlantis.event.AEvent;
-import atlantis.geometry.AAtlasDetector;
-import atlantis.graphics.ACoord;
-import atlantis.graphics.AGraphics;
-import atlantis.graphics.colormap.AColorMap;
-import atlantis.parameters.AParameter;
-import atlantis.utils.APolygon;
-import atlantis.utils.AVector;
-
-/**
- * Base class of Standard 2D projections handles the painting of a projection
- * Handles non-linear transforms (linear transforms in AWindow)
- */
-public abstract class AProjection2D extends AProjection
-{
- private boolean debug = false;
- protected ArrayList<JMenuItem> popupItems;
- protected final static String ASPECT_RATIO_1 = "Aspect Ratio 1";
-
- public AProjection2D()
- {
- popupItems = new ArrayList<JMenuItem>();
- }
-
- public void actionPerformed(ActionEvent e)
- {
- String action = e.getActionCommand();
-
- if (action.equals(ASPECT_RATIO_1))
- setAspectRatio1(ACanvas.getCanvas().getCurrentWindow());
- }
-
- public void setAspectRatio1(AWindow window)
- {
- //Get the extend of the shown projection (i.e. the corners in user coordinates)
- Point2D.Double[] corners = window.getUserCorners();
- AVector v01 = new AVector(corners[0], corners[1]);
- AVector v12 = new AVector(corners[1], corners[2]);
- //Get the actual size of this window on the screen
- Rectangle wSize = window.getBounds();
-
- //Calculate new corner positions
- //This seems a bit longish to me... CLEANUP - S.B.
-
- //Calculate stretch factor f such that we keep the larger one of the two extends in user coordinates
- //"modulus" just means length of vector!
- double f = Math.min(wSize.width / v01.modulus(), wSize.height / v12.modulus());
-
- //Rescale new width and height
- double w = wSize.width / f;
- double h = wSize.height / f;
-
- //All this just to calculate the center and the new scale
- //Maybe easier to split with an if-statement rather than using "Math.min" above
- AVector down = v12.getUnitary().scale(h / 2);
- AVector up = v12.getUnitary().invert().scale(h / 2);
-
- AVector v0 = v01.getUnitary().invert().scale(w / 2).add(up);
- AVector v1 = v01.getUnitary().scale(w / 2).add(up);
- AVector v2 = v01.getUnitary().scale(w / 2).add(down);
-
- AVector v02 = new AVector(corners[0], corners[2]).scale(0.5);
- Point2D.Double center = new Point2D.Double(corners[0].x + v02.dx, corners[0].y + v02.dy);
-
- //Set the new corner positions
- corners[0].setLocation(center.x + v0.dx, center.y + v0.dy);
- corners[1].setLocation(center.x + v1.dx, center.y + v1.dy);
- corners[2].setLocation(center.x + v2.dx, center.y + v2.dy);
-
- //Apply new user coordinates
- window.setUserCorners(corners);
- }
-
- public boolean processLocalCommand(String name)
- {
- return false;
- }
-
- public abstract String getName();
-
- public String getScreenName()
- {
- return getName();
- }
-
- protected Color getBackgroundFillColor(Color[] colorMap)
- {
- return colorMap[parameterStore.get("Color", "BkgFill").getI()];
- }
-
- // min rho for tracks
- public double getMinRho()
- {
- return 0.;
- }
-
- public void paint(AWindow window, Graphics g)
- {
-
- AEvent event = null;
- List hitsAndTracks = null;
- AGraphics ag = AGraphics.makeAGraphics(g);
- long time = 0;
-
- if (debug)
- {
- time = System.currentTimeMillis();
- }
- fillBackground(window, ag);
- if (debug)
- {
- System.out.println("fill " + (System.currentTimeMillis() - time));
- time = System.currentTimeMillis();
- }
-
- // draw detector geometry
- AAtlasDetector.getDetector().draw(window, ag, this);
- if (debug)
- {
- System.out.println("det " + (System.currentTimeMillis() - time));
- time = System.currentTimeMillis();
- }
-
- // is true when F key is pressed during ZMR operations (detector is
- // zoomed for instance, but data are not drawn during the operation)
- boolean fastZooming = parameterStore.get("Projection", "SkipData").getStatus();
- if (fastZooming)
- {
- return;
- }
-
- // draw the current event
- event = eventManager.getCurrentEvent();
-
- //If there is no current event do nothing
- if (event == null) return;
-
- ACalorimeterData.drawCalorimeters(window, ag, this, event);
-
- hitsAndTracks = event.getHitsAndTracks(this);
- if (debug)
- {
- System.out.println("calo " + (System.currentTimeMillis() - time));
- time = System.currentTimeMillis();
- }
- for (int h = 0; h < hitsAndTracks.size(); h++)
- {
- ((AData) hitsAndTracks.get(h)).draw(window, ag, this);
- if (debug)
- {
- long delta = (System.currentTimeMillis() - time);
- if (delta > 0)
- {
- System.out.println(((AData) hitsAndTracks.get(h)).getName() + " " + delta);
- }
- time = System.currentTimeMillis();
- }
- } // for
-
- } // paint()
-
- protected void fillBackground(AWindow window, AGraphics ag)
- {
- ag.setColor(getBackgroundFillColor(AColorMap.getColors()));
- ag.fillRect(0, 0, window.getWidth(), window.getHeight());
- }
-
- // this is here to make drawing of tracks fast enough
- public abstract ACoord getUserPoint(ADHelix dH, double s);
-
- public ACoord nonLinearTransform(ACoord user)
- {
- return user;
- }
-
- public ACoord[] nonLinearTransform(ACoord[] user)
- {
- if (user != null)
- for (int i = 0; i < user.length; i++)
- user[i] = nonLinearTransform(user[i]);
- return user;
- }
-
- public Point2D.Double nonLinearTransform(double x, double y)
- {
- ACoord c = nonLinearTransform(new ACoord(x, y));
- return new Point2D.Double(c.hv[0][0][0], c.hv[1][0][0]);
- }
-
- public Point2D.Double nonLinearTransform(Point2D.Double user)
- {
- return nonLinearTransform(user.x, user.y);
- }
-
- public ACoord inverseNonLinearTransform(ACoord user)
- {
- return user;
- }
-
- public Point2D.Double inverseNonLinearTransform(double x, double y)
- {
- ACoord c = inverseNonLinearTransform(new ACoord(x, y));
-
- return new Point2D.Double(c.hv[0][0][0], c.hv[1][0][0]);
- }
-
- public Point2D.Double inverseNonLinearTransform(Point2D.Double user)
- {
- return inverseNonLinearTransform(user.x, user.y);
- }
-
- protected static ACoord nonLinearTransform2D(ACoord user, String projectionName)
- {
- AParameter fishEyePar = parameterStore.get(projectionName, "FishEye");
-
- if (fishEyePar.getStatus())
- {
- double[] z, r;
- double fishEye = 0.001 * fishEyePar.getD();
- double rTo = parameterStore.get(projectionName, "rTo").getD();
- double zTo = parameterStore.get(projectionName, "zTo").getD();
-
- for (int j = 0; j < user.hv[0].length; ++j)
- {
- z = user.hv[0][j];
- r = user.hv[1][j];
- for (int i = 0; i < z.length; ++i)
- {
- z[i] *= (1 + fishEye * zTo) / (1 + fishEye * Math.abs(z[i]));
- r[i] *= (1 + fishEye * rTo) / (1 + fishEye * Math.abs(r[i]));
- }
- }
- }
- return user;
- }
-
- protected static ACoord inverseNonLinearTransform2D(ACoord user, String projectionName)
- {
- AParameter fishEyePar = parameterStore.get(projectionName, "FishEye");
-
- if (fishEyePar.getStatus())
- {
- double[] z, r;
- double fishEye = 0.001 * fishEyePar.getD();
- double rTo = parameterStore.get(projectionName, "rTo").getD();
- double zTo = parameterStore.get(projectionName, "zTo").getD();
-
- for (int j = 0; j < user.hv[0].length; ++j)
- {
- z = user.hv[0][j];
- r = user.hv[1][j];
- for (int i = 0; i < z.length; ++i)
- {
- z[i] *= 1 / (1 + fishEye * (zTo - Math.abs(z[i])));
- r[i] *= 1 / (1 + fishEye * (rTo - Math.abs(r[i])));
- }
- }
- }
- return user;
- }
-
- protected static Point2D.Double[] aspectRatioLayout(double width, double height, Dimension wSize)
- {
- double f = Math.min(wSize.width / width, wSize.height / height);
-
- width = wSize.width / f;
- height = wSize.height / f;
-
- Point2D.Double[] corners = new Point2D.Double[3];
-
- corners[0] = new Point2D.Double(-width, +height);
- corners[1] = new Point2D.Double(+width, +height);
- corners[2] = new Point2D.Double(+width, -height);
- return corners;
- }
-
- public void setScales()
- {}
-
- public abstract Point2D.Double[] calculateNoZoomCorners(Dimension wSize);
-
- public abstract Point2D.Double getCenter();
-
- public Point2D.Double[] validateCorners(Point2D.Double[] corners)
- {
- APolygon p = new APolygon();
-
- for (int i = 0; i < corners.length; i++)
- p.addPoint(corners[i].x, corners[i].y);
-
- if (p.getArea() == 0)
- return null;
- else
- return corners;
- }
-
- /**
- * This function is called when the ACanvas configuration was written on
- * a screen with one aspect ratio but the current screen has a different
- * aspect ratio. Subclasses may re-implement this to behave however they
- * like. At present (when this was written) only YX does anything.
- *
- * -- Adam Davison
- *
- * @param w AWindow object containing this
- * @param oldaspect Aspect ratio of screen where current window corners were chosen
- * @param newaspect Aspect ratio of screen now
- */
-
- public void aspectRatioChange(AWindow w, double oldaspect, double newaspect) {
- // Do nothing by default
- }
-
- public JMenuItem[] getPopupItems()
- {
- // Can't cast arrays very easily...
- JMenuItem[] ret = new JMenuItem[popupItems.size()];
- for (int i = 0; i < popupItems.size(); i++) {
- ret[i] = (JMenuItem)popupItems.get(i);
- }
- return ret;
- }
-
- protected void addPopupItem(String str) {
- JMenuItem it = new JMenuItem(str);
- popupItems.add(it);
- it.addActionListener(this);
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/projection/AProjection3D.java b/graphics/AtlantisJava/src/atlantis/projection/AProjection3D.java
deleted file mode 100755
index 28bf192814c..00000000000
--- a/graphics/AtlantisJava/src/atlantis/projection/AProjection3D.java
+++ /dev/null
@@ -1,167 +0,0 @@
-package atlantis.projection;
-
-import atlantis.data.ADHelix;
-import atlantis.graphics.*;
-import atlantis.parameters.APar;
-import atlantis.utils.AMath;
-import atlantis.event.*;
-import java.awt.*;
-import java.awt.geom.*;
-import javax.swing.JMenuItem;
-
-public class AProjection3D extends AProjection2D {
-
- // axis about which the rotations take place
- static private double phi;
- static private double sinPhi, cosPhi;
- // center of rotation in xyz frame
- static private double rx, ry, rz;
- // three axis abc in the xyz frame
- static private double ax, ay, az;
- static private double bx, by, bz;
- static private double cx, cy, cz;
-
- static private double[][] abc=new double[3][3];
-
- public AProjection3D() {
- JMenuItem asp = new JMenuItem(ASPECT_RATIO_1);
- asp.addActionListener(this);
- popupItems.add(asp);
- }
-
- public String getName() {
- return "3D";
- }
-
- public String getXLabel() {
- return "V";
- }
-
- public String getYLabel() {
- return "H";
- }
-
- public String getXUnits() {
- return "(cm)";
- }
-
- public String getYUnits() {
- return "(cm)";
- }
-
- public Point2D.Double getCenter() {
- return new Point2D.Double(0, 0);
- }
-
- public Point2D.Double[] calculateNoZoomCorners(Dimension wSize) {
- double radius=parameterStore.get("Projection", "TrackingRadius").getD();
- double length=parameterStore.get("Projection", "TrackingLength").getD();
- return aspectRatioLayout(length, radius, wSize);
- }
-
- public static double getPhi() {
- return parameterStore.get("3D", "Phi").getD();
- }
-
- public static void updateParameters() {
- phi=Math.toRadians(getPhi());
- sinPhi=Math.sin(phi);
- cosPhi=Math.cos(phi);
- ax=parameterStore.get("3D", "xAxis").getD();
- ay=parameterStore.get("3D", "yAxis").getD();
- az=parameterStore.get("3D", "zAxis").getD();
- rx=parameterStore.get("Event", "XVtx").getD();
- ry=parameterStore.get("Event", "YVtx").getD();
- rz=parameterStore.get("Event", "ZVtx").getD();
- double dx;
- double dy;
- double dz;
-
- if(ax==0.&&ay==0) {
- // d is the y-axis
- dx=0.;
- dy=-1.;
- dz=0.;
- } else {
- // d is the z-axis
- dx=0.;
- dy=0.;
- dz=1.;
- }
-
- bx=+ay*dz-az*dy;
- by=-ax*dz+az*dx;
- bz=+ax*dy-ay*dx;
-
- cx=+ay*bz-az*by;
- cy=-ax*bz+az*bx;
- cz=+ax*by-ay*bx;
- }
-
- public static double[][] getRotationMatrix() {
- updateParameters();
- abc[0][0]=ax;
- abc[0][1]=ay;
- abc[0][2]=az;
- abc[1][0]=bx;
- abc[1][1]=by;
- abc[1][2]=bz;
- abc[2][0]=cx;
- abc[2][1]=cy;
- abc[2][2]=cz;
- return abc;
- }
-
- public static double[] getRotated(double[] p) {
- updateParameters();
- double x=p[0]-rx;
- double y=p[1]-ry;
- double z=p[2]-rz;
-
- double u=x*ax+y*ay+z*az;
- double v=x*bx+y*by+z*bz;
- double w=x*cx+y*cy+z*cz;
-
- p[0]=u;
- p[1]=v*cosPhi-w*sinPhi;
- p[2]=v*sinPhi+w*cosPhi;
- return p;
- }
-
- public static double[][] getRotated(int numDraw, int[] listdl, float[] x, float[] y, float[] z) {
- updateParameters();
-
- double[][] uvw=new double[3][numDraw];
-
- for(int i=0; i<numDraw; i++) {
- int list=listdl[i];
- double xx=x[list]-rx;
- double yy=y[list]-ry;
- double zz=z[list]-rz;
- double u=xx*ax+yy*ay+zz*az;
- double v=xx*bx+yy*by+zz*bz;
- double w=xx*cx+yy*cy+zz*cz;
- uvw[0][i]=u;
- uvw[1][i]=v*cosPhi-w*sinPhi;
- uvw[2][i]=v*sinPhi+w*cosPhi;
- }
- return uvw;
- }
-
- public static int[] getAxisMapping() {
- return new int[] {0, 1, 2};
- }
-
- public ACoord getUserPoint(ADHelix dH, double s) {
- return nonLinearTransform(dH.get3DPoint(s));
- }
-
- public ACoord nonLinearTransform(ACoord user) {
- return nonLinearTransform2D(user, getName());
- }
-
- public ACoord inverseNonLinearTransform(ACoord user) {
- return inverseNonLinearTransform2D(user, getName());
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/projection/AProjection3DBox.java b/graphics/AtlantisJava/src/atlantis/projection/AProjection3DBox.java
deleted file mode 100755
index 62ae22b6913..00000000000
--- a/graphics/AtlantisJava/src/atlantis/projection/AProjection3DBox.java
+++ /dev/null
@@ -1,569 +0,0 @@
-package atlantis.projection;
-
-import java.awt.Color;
-import java.awt.Graphics;
-import java.awt.Rectangle;
-import java.awt.event.ActionEvent;
-import java.awt.geom.Point2D;
-import java.util.LinkedList;
-
-import javax.swing.JMenuItem;
-
-import Jama.Matrix;
-import atlantis.canvas.ACanvas;
-import atlantis.canvas.AWindow;
-import atlantis.data.A3DPointData;
-import atlantis.data.ADHelix;
-import atlantis.event.AEvent;
-import atlantis.data.ATrackData;
-import atlantis.graphics.ACoord;
-import atlantis.graphics.ADrawParameters;
-import atlantis.graphics.ADrawable;
-import atlantis.graphics.AGraphics;
-import atlantis.graphics.colormap.AColorMap;
-
-public class AProjection3DBox extends AProjection
-{
- // angle of the rotation about the axis
- static private double phi;
- static private double sinPhi;
- static private double cosPhi;
-
- static private double scale;
- static private double zP;
- static private double xz;
- static private double yz;
-
- static private AVec3D centerDisplay;
- static private AVec3D sizeDisplay;
-
- static private AVec3D sizeUser = new AVec3D(1.1, .5, .5);
-
- static final String RESTORE_DEFAULTS = "Default Box Volume";
-
- static private LinkedList<AVec3D[]> planes = new LinkedList<AVec3D[]>();
-
- static private JMenuItem[] popupItems;
-
- public AProjection3DBox()
- {
- popupItems = new JMenuItem[1];
- popupItems[0] = new JMenuItem(RESTORE_DEFAULTS);
- popupItems[0].addActionListener(this);
- }
-
- public String getName()
- {
- return "3DBox";
- }
-
- public String getScreenName()
- {
- return "3DBox";
- }
-
- public String getXLabel()
- {
- return "V";
- }
-
- public String getYLabel()
- {
- return "H";
- }
-
- public String getXUnits()
- {
- return "(cm)";
- }
-
- public String getYUnits()
- {
- return "(cm)";
- }
-
- public void setScales()
- {}
-
- public boolean processLocalCommand(String name)
- {
- return false;
- }
-
- public Point2D.Double getCenter(AWindow window)
- {
- updateParameters(window);
- return new Point2D.Double(centerDisplay.x, centerDisplay.y);
- }
-
- public void zoom(double factor)
- {
- if (factor != 0.)
- {
- sizeUser = sizeUser.scale(factor);
- updateScale();
- }
- }
-
- public static void setSizeUser(double size)
- {
- if (size != 0.)
- {
- sizeUser.x = size;
- // updateScale();
- // ACanvas.getCanvas().getCurrentWindow().repaintFromScratch();
- }
- }
-
- public void zoomHorizontal(double factor)
- {
- if (factor != 0.)
- {
- sizeUser.x *= factor;
- updateScale();
- }
- }
-
- public void zoomVertical(double factor)
- {
- if (factor != 0. && !Double.isInfinite(factor))
- {
- sizeUser.y *= factor;
- sizeUser.z *= factor;
- updateScale();
- }
- }
-
- public static void updateScale()
- {
- scale = parameterStore.get("3DBox", "Scale").getD();
- ACanvas.getCanvas().getCurrentWindow().setUserCorners(0, 2. * sizeUser.x / scale, -sizeUser.y / scale, sizeUser.y / scale);
- }
-
- public static void updateScale(AWindow window)
- {
- scale = parameterStore.get("3DBox", "Scale").getD();
- window.setUserCorners(0, 2. * sizeUser.x / scale, -sizeUser.y / scale, sizeUser.y / scale);
- }
-
- public static double getPhi()
- {
- return parameterStore.get("3DBox", "Phi").getD();
- }
-
- public static void updateParameters(AWindow window)
- {
- phi = Math.toRadians(getPhi());
- sinPhi = Math.sin(phi);
- cosPhi = Math.cos(phi);
- scale = parameterStore.get("3DBox", "Scale").getD();
- zP = parameterStore.get("3DBox", "ZP").getD();
- xz = parameterStore.get("3DBox", "xz").getD();
- yz = parameterStore.get("3DBox", "yz").getD();
-
- Rectangle bounds = window.getCurrDisp();
- centerDisplay = new AVec3D(bounds.x + bounds.width / 2, bounds.y + bounds.height / 2, 0.);
- sizeDisplay = new AVec3D(0.5 * bounds.width * scale, 0.5 * bounds.height * scale, 0.5 * bounds.height * scale);
- centerDisplay.x -= sizeDisplay.x;
- updateScale(window);
- }
-
- protected void drawBox(AGraphics ag)
- {
- double x = sizeDisplay.x;
- double y = sizeDisplay.y;
- double z = sizeDisplay.z;
-
- AVec3D[] firstPlane = new AVec3D[] { new AVec3D(0, y, z), new AVec3D(0, y, -z), new AVec3D(0, -y, -z), new AVec3D(0, -y, z) };
- AVec3D[] middlePlane = new AVec3D[] { new AVec3D(x, y, z), new AVec3D(x, y, -z), new AVec3D(x, -y, -z), new AVec3D(x, -y, z) };
- AVec3D[] lastPlane = new AVec3D[] { new AVec3D(2 * x, y, z), new AVec3D(2 * x, y, -z), new AVec3D(2 * x, -y, -z), new AVec3D(2 * x, -y, z) };
-
- planes = new LinkedList<AVec3D[]>();
-
- planes.add(firstPlane);
- planes.add(middlePlane);
- planes.add(lastPlane);
-
- for (int i = 0; i < planes.size(); i++)
- {
- AVec3D[] plane = (AVec3D[]) (planes.get(i));
- for (int j = 0; j < plane.length; ++j)
- plane[j] = applyViewPoint(plane[j]);
- }
-
- double[] h = new double[4];
- double[] v = new double[4];
-
- // back
- AVec3D[] back = new AVec3D[] { firstPlane[3], firstPlane[1], lastPlane[1], lastPlane[3] };
- for (int j = 0; j < back.length; ++j)
- {
- h[j] = back[j].x;
- v[j] = back[j].y;
- }
-
- ag.updateDrawParameters(new ADrawParameters(true, 0, 0, 1, 0, 0));
- ag.setColor(Color.gray);
- ag.fillPolygon(h, v, 4);
- ag.setColor(Color.white);
- ag.drawPolygon(h, v, 4);
- // base
- AVec3D[] base = new AVec3D[] { firstPlane[0], firstPlane[1], lastPlane[1], lastPlane[0] };
- for (int j = 0; j < base.length; ++j)
- {
- h[j] = base[j].x;
- v[j] = base[j].y;
- }
- ag.setColor(Color.black);
- ag.fillPolygon(h, v, 4);
- ag.setColor(Color.white);
- ag.drawPolygon(h, v, 4);
-
- for (int i = 0; i < planes.size(); i++)
- {
- AVec3D[] plane = (AVec3D[]) (planes.get(i));
- for (int j = 0; j < plane.length; ++j)
- {
- h[j] = plane[j].x;
- v[j] = plane[j].y;
- }
- ag.setColor(Color.black);
- ag.fillPolygon(h, v, 4);
- ag.setColor(Color.white);
- ag.drawPolygon(h, v, 4);
- }
-
- // top
- AVec3D[] top = new AVec3D[] { firstPlane[3], firstPlane[2], lastPlane[2], lastPlane[3] };
- for (int j = 0; j < top.length; ++j)
- {
- h[j] = top[j].x;
- v[j] = top[j].y;
- }
- ag.setColor(Color.white);
- ag.drawPolygon(h, v, 4);
- }
-
- protected void touchupBox(AGraphics ag)
- {
- ag.updateDrawParameters(new ADrawParameters(true, 0, 0, 1, 0, 0));
- ag.setColor(Color.white);
- for (int i = 0; i < planes.size(); i++)
- {
- AVec3D[] plane = (AVec3D[]) (planes.get(i));
- ag.drawLine(plane[1].x, plane[1].y, plane[2].x, plane[2].y);
- }
- }
-
- AVec3D scale(AVec3D v)
- {
- return v.mult(sizeDisplay).divide(sizeUser);
- }
-
- AVec3D rotate(AVec3D v)
- {
- return new AVec3D(v.x, v.y * cosPhi - v.z * sinPhi, v.y * sinPhi + v.z * cosPhi);
- }
-
- static AVec3D applyViewPoint(AVec3D v)
- {
- return new AVec3D((v.x + xz * v.z) * (1 - v.z * zP) + centerDisplay.x, (v.y + yz * v.z) * (1 - v.z * zP) + centerDisplay.y, v.z);
- }
-
- public void paint(AWindow window, Graphics g)
- {
- updateParameters(window);
- AGraphics ag = AGraphics.makeAGraphics(g);
- fillBackground(window, ag);
- drawBox(ag);
- AEvent event = eventManager.getCurrentEvent();
- if (event == null)
- return;
-
- java.util.List hitsAndTracks = event.getHitsAndTracks(this);
-
- for (int h = 0; h < hitsAndTracks.size(); h++)
- {
- Object o = hitsAndTracks.get(h);
- if (o instanceof ATrackData)
- drawTracks((ATrackData) o, window, ag);
- else if (o instanceof A3DPointData)
- drawPoints((A3DPointData) o, window, ag);
- }
- touchupBox(ag);
- }
-
- protected void drawPoints(A3DPointData pointData, AWindow window, AGraphics ag)
- {
- double[][] points = pointData.get3DPoints();
- int[] index = pointData.get3DPointsIndex();
-
- double[][][] hv = new double[2][1][index.length];
-
- for (int i = 0; i < points.length; ++i)
- {
- AVec3D point = rotate(new AVec3D(AProjection3D.getRotated(points[i])));
-
- if (point.x > 0 && point.x < 2 * sizeUser.x && point.y > -sizeUser.y && point.y < sizeUser.y && point.z > -sizeUser.z && point.z < sizeUser.z)
- {
- point = applyViewPoint(scale(point));
- hv[0][0][i] = point.x;
- hv[1][0][i] = point.y;
- }
- else
- {
- // aaargh allow this to be clipped from picture for now
- hv[0][0][i] = -1000.;
- hv[1][0][i] = -1000.;
- }
- }
-
- ag.draw(new ACoord(hv, index, pointData, ACoord.SYMBOLS));
- }
-
- protected void drawTracks(ATrackData tracks, AWindow window, AGraphics ag)
- {
- ADHelix[] dhelix = tracks.getHelices();
-
- int numPlanes = planes.size();
- int numSegments = numPlanes + 4;
- AVec3D[][] intersection = new AVec3D[dhelix.length][numPlanes];
-
- double[][][] hv = new double[2][dhelix.length * numSegments][0];
- int[] index = new int[dhelix.length * numSegments];
- int[] indexTemp = tracks.getDrawList();
- for (int i = 0; i < indexTemp.length; ++i)
- for (int j = 0; j < numSegments; ++j)
- index[i * numSegments + j] = indexTemp[i];
-
- int numPointsOnEllipse = 24;
- AVec3D[] ellipse = new AVec3D[numPointsOnEllipse + 1];
- double radius = 0.005;
- for (int i = 0; i < ellipse.length; i++)
- {
- double phi = 2. * Math.PI * i / numPointsOnEllipse;
- ellipse[i] = new AVec3D(0., radius * Math.sin(phi), radius * Math.cos(phi));
- }
-
- for (int j = 0; j < dhelix.length; ++j)
- if (dhelix[j] != null)
- {
- // s always 0? I don't know why that is...
- double s = 0.;
- AVec3D start = new AVec3D(dhelix[j].get3DPointAsArray(s));
- AVec3D end = new AVec3D(dhelix[j].get3DPointAsArray(s + 0.01));
-
- boolean backwards = false;
-
- // calculate intersections
- for (int p = 0; p < planes.size(); ++p)
- {
- // position of plane
- double xInt = p * sizeUser.x;
- double m = (xInt - start.x) / (end.x - start.x);
-
- // While we're in here, can check if we're pointing in the right direction
- if (p == 1 && m < 0.0) { backwards = true; }
-
- double yInt = start.y + m * (end.y - start.y);
- double zInt = start.z + m * (end.z - start.z);
- intersection[j][p] = new AVec3D(xInt, yInt, zInt);
- }
-
- // Throw out anything that isn't pointing in the right direction...
- if (backwards) { continue; }
-
- AVec3D first = rotate(intersection[j][0]);
- AVec3D middle = rotate(intersection[j][1]);
- AVec3D last = rotate(intersection[j][numPlanes - 1]);
-
- if (first.y > -sizeUser.y && first.y < sizeUser.y && first.z > -sizeUser.z && first.z < sizeUser.z && last.y > -sizeUser.y && last.y < sizeUser.y && last.z > -sizeUser.z && last.z < sizeUser.z)
- {
-
- double[][] cov = dhelix[j].helix.getCovariance();
- if (cov != null)
- {
- double[][] c = new double[2][2];
- c[0][0] = cov[0][0];
- c[0][1] = cov[0][1];
- c[1][0] = cov[1][0];
- c[1][1] = cov[1][1];
- Matrix covM = new Matrix(c);
- Matrix errM = covM.inverse();
-
- double b1 = errM.get(0, 0);
- double b2 = errM.get(1, 1);
-
- double b3 = 2. * errM.get(0, 1);
- if (parameterStore.get("3DBox", "ellipses").getStatus())
- {
- ellipse = new AVec3D[180];
-
- for (int i = 0; i < 360; i += 2)
- {
- double thetat = Math.toRadians(i);
- double tt = Math.tan(thetat);
- double xx = Math.sqrt(1. / (b1 + b2 * tt * tt + b3 * tt));
- if (i > 90 && i <= 270)
- xx *= -1.;
- ellipse[i / 2] = new AVec3D(0., xx, xx * tt);
- }
- }
- // add intersections to draw list
- for (int p = 0; p < planes.size(); ++p)
- {
- double[] h = new double[ellipse.length];
- double[] v = new double[ellipse.length];
-
- for (int i = 0; i < ellipse.length; i++)
- {
- AVec3D point = applyViewPoint(scale(rotate(intersection[j][p].add(ellipse[i]))));
- h[i] = point.x;
- v[i] = point.y;
- }
-
- hv[0][numSegments * j + p] = h;
- hv[1][numSegments * j + p] = v;
- }
- }
- first = applyViewPoint(scale(first));
- middle = applyViewPoint(scale(middle));
- last = applyViewPoint(scale(last));
-
- double[][] edge = new double[planes.size()][2];
- for (int i = 0; i < planes.size(); i++)
- {
- AVec3D[] plane = (AVec3D[]) (planes.get(i));
- double xInt = plane[1].x;
- double m = (xInt - first.x) / (last.x - first.x);
- double yInt = first.y + m * (last.y - first.y);
- edge[i] = new double[] { xInt, yInt };
- }
-
- hv[0][numSegments * j + 3] = new double[] { first.x, edge[1][0] };
- hv[1][numSegments * j + 3] = new double[] { first.y, edge[1][1] };
- hv[0][numSegments * j + 4] = new double[] { middle.x, edge[2][0] };
- hv[1][numSegments * j + 4] = new double[] { middle.y, edge[2][1] };
-
- drawDashed(ag, tracks, indexTemp[j], edge[1][0], edge[1][1], middle.x, middle.y);
- drawDashed(ag, tracks, indexTemp[j], edge[2][0], edge[2][1], last.x, last.y);
- }
- }
- ag.draw(new ACoord(hv, index, tracks, ACoord.POLYLINES));
- }
-
- protected void drawDashed(AGraphics ag, ADrawable source, int ind, double h0, double v0, double h1, double v1)
- {
- double dH = h1 - h0;
- double dV = v1 - v0;
- double dist = Math.sqrt(dH * dH + dV * dV);
- double dashSize = 4;
- int num = (int) (dist / dashSize);
- int[] index = new int[num / 2 + 1];
- double[][][] hv = new double[2][num / 2 + 1][2];
-
- for (int i = 0; i < num; ++i)
- {
- if (i % 2 == 1)
- {
- int n = i / 2;
- index[n] = ind;
- hv[0][n][0] = h0 + dH * i / num;
- hv[0][n][1] = h0 + dH * (i + 1) / num;
- hv[1][n][0] = v0 + dV * i / num;
- hv[1][n][1] = v0 + dV * (i + 1) / num;
- if (i >= num - 2)
- {
- hv[0][n][1] = h1;
- hv[1][n][1] = v1;
- }
- }
- }
- ag.draw(new ACoord(hv, index, source, ACoord.POLYLINES));
- }
-
-protected void fillBackground(AWindow window, AGraphics ag)
- {
- Color[] colorMap = AColorMap.getColors();
- ag.setColor(colorMap[getBackgroundFillColor()]);
- ag.fillRect(0, 0, window.getWidth(), window.getHeight());
- }
-
- protected int getBackgroundFillColor()
- {
- return parameterStore.get("Color", "BkgFill").getI();
- }
-
- public JMenuItem[] getPopupItems()
- {
- return popupItems;
- }
-
- public void actionPerformed(ActionEvent e)
- {
- String action = e.getActionCommand();
- if (action.equals(RESTORE_DEFAULTS))
- {
- sizeUser.x = 2.;
- sizeUser.y = .1;
- sizeUser.z = .1;
- updateScale();
- ACanvas.getCanvas().getCurrentWindow().repaintFromScratch();
- }
- }
-
-}
-
-class AVec3D
-{
- double x, y, z;
-
- AVec3D(double x, double y, double z)
- {
- this.x = x;
- this.y = y;
- this.z = z;
- }
-
- AVec3D(double[] v)
- {
- this.x = v[0];
- this.y = v[1];
- this.z = v[2];
- }
-
- AVec3D cross(AVec3D d)
- {
- return new AVec3D(+this.y * d.z - this.z * d.y, -this.x * d.z + this.z * d.x, +this.x * d.y - this.y * d.x);
- }
-
- AVec3D add(AVec3D d)
- {
- return new AVec3D(x + d.x, y + d.y, z + d.z);
- }
-
- AVec3D mult(AVec3D d)
- {
- return new AVec3D(x * d.x, y * d.y, z * d.z);
- }
-
- AVec3D divide(AVec3D d)
- {
- return new AVec3D(x / d.x, y / d.y, z / d.z);
- }
-
- AVec3D scale(double s)
- {
- return new AVec3D(s * x, s * y, s * z);
- }
-
- public String toString()
- {
- return x + " " + y + " " + z;
- }
-
- public double mag2() {
- return x*x + y*y + z*z;
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/projection/AProjectionEventInfo.java b/graphics/AtlantisJava/src/atlantis/projection/AProjectionEventInfo.java
deleted file mode 100644
index 1735ec2a666..00000000000
--- a/graphics/AtlantisJava/src/atlantis/projection/AProjectionEventInfo.java
+++ /dev/null
@@ -1,197 +0,0 @@
-package atlantis.projection;
-
-import java.awt.Color;
-import java.awt.Dimension;
-import java.awt.Font;
-import java.awt.FontMetrics;
-import java.awt.Graphics;
-import java.awt.event.ActionEvent;
-import java.awt.geom.Point2D;
-import javax.swing.ImageIcon;
-import javax.swing.JMenuItem;
-
-import atlantis.canvas.ACanvas;
-import atlantis.canvas.AWindow;
-import atlantis.data.ADHelix;
-import atlantis.event.AEvent;
-import atlantis.globals.AGlobals;
-import atlantis.graphics.ACoord;
-import atlantis.graphics.AGraphics;
-import atlantis.utils.AUtilities;
-
-/** Class used to display the ATLAS Experiment logo, along with
- * Event Number, Run Number, and Date/Time
- *
- * @author Tom McLaughlan
- */
-public class AProjectionEventInfo extends AProjectionInfo {
-
- private static long EventNumber;
- private static long RunNumber;
- private static String DateTime;
- private static String Source;
- private static Color textColor = Color.white,
- backgroundColor = Color.black;
-
- public String getName() {
- return "EventInfo";
- }
-
- public void paint(AWindow window, Graphics g) {
-
- AEvent event = eventManager.getCurrentEvent();
-
- if (event != null) {
- RunNumber = event.getRunNumber();
- EventNumber = event.getEventNumber();
- DateTime = event.getDateTime();
- Source = event.getSourceName();
- }
-
- // Begin drawing
- AGraphics ag = AGraphics.makeAGraphics(g);
- // Fill the background
- ag.setColor(backgroundColor);
- ag.fillRect(0, 0, window.getWidth(), window.getHeight());
-
- String iconPath = AGlobals.instance().getHomeDirectory() + "img" + System.getProperty("file.separator");
-
- ImageIcon i = AUtilities.getFileAsImageIcon(iconPath + "atlas_logo_shadow.png");
-
-
- // Determine height and width of current window, and width of ATLAS logo
- // These are then used to determine a scaling factor which is used in the
- // scale function.
- //
- int height = window.getSize().height;
- int width = window.getSize().width;
- int iwidth = i.getIconWidth();
- double factor = (double) width / (double) iwidth;
-
- // Call scale function to scale image to window size
- ImageIcon iscale = AUtilities.scale(i.getImage(), factor, parameterStore.get("Prefs", "AntiAlias").getStatus());
- // x, y calculated to position image exactly centred
- int x = (width / 2) - (iscale.getIconWidth() / 2);
- int y = (height / 2) - ((3 * iscale.getIconHeight()) / 4);
-
- // get screen dpi for resolution independent scaling
- // commented out 27/3 -- EJ
- // without a screen you obviously do not have a screen resolution
- int dpi = 72; //Toolkit.getDefaultToolkit().getScreenResolution();
-
- // Set a scaling font size with window width
- int fontSize = (int) Math.round(3.0 * width / (double) dpi);
-
- Font f = new Font("SansSerif", Font.PLAIN, fontSize);
-
- ag.drawImage(iscale.getImage(), x, y);
-
- ag.setColor(textColor); // Set colour for text
- ag.updateColor(); // Update current colour for drawing
-
- String DateString = "", RunEventString = "";
- String DisclaimerString1 = "", DisclaimerString2 = "";
- if (event != null) {
- DateString = "Date: " + DateTime;
- RunEventString = "Run Number: " + RunNumber + ", Event Number: " + EventNumber;
- DisclaimerString1 = "Snapshot of a proton collision";
- DisclaimerString2 = "directly from the ATLAS experiment";
- } else {
- RunEventString = "No event data available";
- }
-
- FontMetrics fm = g.getFontMetrics(f);
- int DateWidth = fm.stringWidth(DateString);
- int RunEventWidth = fm.stringWidth(RunEventString);
- int Disclaimer1Width = fm.stringWidth(DisclaimerString1);
- int Disclaimer2Width = fm.stringWidth(DisclaimerString2);
-
- // This may need changing to be a bit more elegant
- // -- currently under investigation by Tom
-
- // Check if font is wider than the window and scale down til it fits.
- while ((RunEventWidth > width - 20) || (DateWidth > width - 20))
- {
-
- fontSize = fontSize - 1;
- f = new Font("SansSerif", Font.PLAIN, fontSize);
- fm = g.getFontMetrics(f);
- RunEventWidth = fm.stringWidth(RunEventString);
- DateWidth = fm.stringWidth(DateString);
- Disclaimer1Width = fm.stringWidth(DisclaimerString1);
- Disclaimer2Width = fm.stringWidth(DisclaimerString2);
- }
-
- ag.setFont(f); // set font as defined above
-
- // For the streams at P1, we include a disclaimer
- // Anything without .xml is considered a stream for now
- if (Source != null && !Source.endsWith(".xml")) {
- ag.drawString(DisclaimerString1,
- (width / 2) - Disclaimer1Width / 2, 0.89 * height);
- ag.drawString(DisclaimerString2,
- (width / 2) - Disclaimer2Width / 2, 0.95 * height);
- }
-
- if (event != null && !DateTime.equals("") && !DateTime.equals("n/a")) {
- // If event contains Date/Time data, draw Run Number, Event Number and Date/Time
- // and position text in centre of window
- ag.drawString(RunEventString,
- (width / 2) - RunEventWidth / 2, y + (1.1 * iscale.getIconHeight()));
-
- ag.drawString(DateString,
- (width / 2) - DateWidth / 2, y + (1.3 * iscale.getIconHeight()));
- } else {
- // Draw text (No Date/Time, for MC events, etc)
- ag.drawString(RunEventString,
- (width / 2) - RunEventWidth / 2, y + (1.1 * iscale.getIconHeight()));
-
- }
-
- }
-
- public JMenuItem[] getPopupItems() {
- return null;
- }
-
- public String getXLabel() {
- return "";
- }
-
- public String getXUnits() {
- return "";
- }
-
- public String getYLabel() {
- return "";
- }
-
- public String getYUnits() {
- return "";
- }
-
- @Override
- public void actionPerformed(ActionEvent e) {
- assert false : "Did not expect AProjectionEventInfo to be used as ActionListener";
- }
-
- public void setScales() {
- }
-
- public Point2D.Double getCenter() {
- return new Point2D.Double(0.0, 0.0);
- }
-
- public Point2D.Double[] calculateNoZoomCorners(Dimension wSize) {
- Point2D.Double[] corners = new Point2D.Double[3];
-
- corners[0] = new Point2D.Double(0., 2.);
- corners[1] = new Point2D.Double(100., 2.);
- corners[2] = new Point2D.Double(100., -2.);
- return corners;
- }
-
- public ACoord getUserPoint(ADHelix dH, double s) {
- return ACoord.NO_DATA;
- }
-}//end of EventInfoProjection class
diff --git a/graphics/AtlantisJava/src/atlantis/projection/AProjectionFR.java b/graphics/AtlantisJava/src/atlantis/projection/AProjectionFR.java
deleted file mode 100755
index ddc52bdb54c..00000000000
--- a/graphics/AtlantisJava/src/atlantis/projection/AProjectionFR.java
+++ /dev/null
@@ -1,127 +0,0 @@
-package atlantis.projection;
-
-import java.awt.Dimension;
-import java.awt.geom.Point2D;
-
-import atlantis.canvas.ACanvas;
-import atlantis.data.ADHelix;
-import atlantis.graphics.ACoord;
-import atlantis.interactions.AZMRInteraction;
-import atlantis.parameters.APar;
-import atlantis.parameters.AParameter;
-import atlantis.utils.AMath;
-
-public class AProjectionFR extends AProjectionPhi
-{
- public String getName()
- {
- return "FR";
- }
-
- public String getXLabel()
- {
- return AMath.RHO;
- }
-
- public String getXUnits()
- {
- return "(cm)";
- }
-
- public Point2D.Double[] calculateNoZoomCorners(Dimension wSize)
- {
- Point2D.Double[] corners = new Point2D.Double[3];
- int phiWrap = parameterStore.get(getName(), "PhiWrap").getI();
-
- double radius = parameterStore.get("Projection", "Radius").getD();
- corners[0] = new Point2D.Double(0, 360 + phiWrap);
- corners[1] = new Point2D.Double(radius, 360 + phiWrap);
- corners[2] = new Point2D.Double(radius, 0);
- return corners;
- }
-
- public ACoord getUserPoint(ADHelix dH, double s)
- {
- return nonLinearTransform(dH.getFRPoint(s));
- }
-
- public ACoord nonLinearTransform(ACoord user)
- {
- AParameter fishEyePar = parameterStore.get(getName(), "FishEye");
-
- // Fisheye of projection FR should not change phi
- if (fishEyePar.getStatus())
- {
- double[] r;
- //double[] phi;
- double fishEye = 0.001 * fishEyePar.getD();
- double rTo = parameterStore.get(getName(), "rTo").getD();
- //Point2D.Double[] corners = ACanvas.getCanvas().getCurrentWindow().getUserCorners();
- //double phiMid = (corners[0].getY() + corners[2].getY()) / 2.;
-
- for (int j = 0; j < user.hv[0].length; ++j)
- {
- r = user.hv[0][j];
- //phi = user.hv[1][j];
- for (int i = 0; i < r.length; ++i)
- {
- double fact = (1 + fishEye * rTo) / (1 + fishEye * r[i]);
-
- //phi[i] = phiMid + (phi[i] - phiMid) * fact;
- r[i] *= fact;
- }
- }
- }
-
- // Horizontal Zoom is applied in ZMR interaction -
- // don't know what this has to do here?
- // CLEANUP - S.B.
- /* AParameter horZoomPar = APar.get(getName(), "HorizontalZoom");
-
- if (horZoomPar.getStatus())
- {
- // performe initial horizontal zoom
- double hzf = APar.get("FR", "HorizontalZoom").getD();
- Point2D.Double[] corners = ACanvas.getCanvas().getCurrentWindow().getUserCorners();
- double centerRho = corners[0].getX();
- double centerPhi = (corners[0].getY() + corners[2].getY()) / 2.;
- Point2D.Double center = new Point2D.Double(centerRho, centerPhi);
- AZMRInteraction.performHorizontalZoom(center, hzf, ACanvas.getCanvas().getPaintingWindow());
-
- horZoomPar.setStatus(false);
- }
- */
- return user;
- }
-
- public ACoord inverseNonLinearTransform(ACoord user)
- {
- AParameter fishEyePar = parameterStore.get(getName(), "FishEye");
-
- if (fishEyePar.getStatus())
- {
- double[] r;
- //double[] phi;
- double fishEye = 0.001 * fishEyePar.getD();
- double rTo = parameterStore.get(getName(), "rTo").getD();
- //Point2D.Double[] corners = ACanvas.getCanvas().getCurrentWindow().getUserCorners();
- //double phiMid = (corners[0].getY() + corners[2].getY()) / 2.;
-
- for (int j = 0; j < user.hv[0].length; ++j)
- {
- r = user.hv[0][j];
- //phi = user.hv[1][j];
- for (int i = 0; i < r.length; ++i)
- {
- double fact = 1 / (1 + fishEye * (rTo - r[i]));
-
- //phi[i] = phiMid + (phi[i] - phiMid) * fact;
- r[i] *= fact;
- }
- }
- }
-
- return user;
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/projection/AProjectionFZ.java b/graphics/AtlantisJava/src/atlantis/projection/AProjectionFZ.java
deleted file mode 100755
index 32c092064bd..00000000000
--- a/graphics/AtlantisJava/src/atlantis/projection/AProjectionFZ.java
+++ /dev/null
@@ -1,76 +0,0 @@
-package atlantis.projection;
-
-
-import atlantis.parameters.AParameter;
-import atlantis.parameters.APar;
-import java.awt.geom.*;
-import java.awt.*;
-import atlantis.graphics.ACoord;
-import atlantis.data.ADHelix;
-
-
-public class AProjectionFZ extends AProjectionPhi {
-
- public String getName() {
- return "FZ";
- }
-
- public String getXLabel() {
- return "Z";
- }
-
- public String getXUnits() {
- return "(cm)";
- }
-
- public Point2D.Double[] calculateNoZoomCorners(Dimension wSize) {
- Point2D.Double[] corners=new Point2D.Double[3];
- int phiWrap=parameterStore.get(getName(), "PhiWrap").getI();
-
- double length=parameterStore.get("Projection", "Length").getD();
-
- corners[0]=new Point2D.Double(-length, 360+phiWrap);
- corners[1]=new Point2D.Double(length, 360+phiWrap);
- corners[2]=new Point2D.Double(length, 0);
- return corners;
- }
-
- public ACoord getUserPoint(ADHelix dH, double s) {
- return nonLinearTransform(dH.getFZPoint(s));
- }
-
- public ACoord nonLinearTransform(ACoord user) {
- AParameter fishEyePar=parameterStore.get(getName(), "FishEye");
-
- if(fishEyePar.getStatus()) {
- double[] z;
- double fishEye=0.001*fishEyePar.getD();
- double zTo=parameterStore.get(getName(), "zTo").getD();
-
- for(int j=0; j<user.hv[0].length; ++j) {
- z=user.hv[0][j];
- for(int i=0; i<z.length; ++i)
- z[i]*=(1+fishEye*zTo)/(1+fishEye*Math.abs(z[i]));
- }
- }
- return user;
- }
-
- public ACoord inverseNonLinearTransform(ACoord user) {
- AParameter fishEyePar=parameterStore.get(getName(), "FishEye");
-
- if(fishEyePar.getStatus()) {
- double[] z;
- double fishEye=0.001*fishEyePar.getD();
- double zTo=parameterStore.get(getName(), "zTo").getD();
-
- for(int j=0; j<user.hv[0].length; ++j) {
- z=user.hv[0][j];
- for(int i=0; i<z.length; ++i)
- z[i]*=1/(1+fishEye*(zTo-Math.abs(z[i])));
- }
- }
- return user;
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/projection/AProjectionInfo.java b/graphics/AtlantisJava/src/atlantis/projection/AProjectionInfo.java
deleted file mode 100644
index b7428f17751..00000000000
--- a/graphics/AtlantisJava/src/atlantis/projection/AProjectionInfo.java
+++ /dev/null
@@ -1,102 +0,0 @@
-package atlantis.projection;
-
-import java.awt.Color;
-import java.awt.Dimension;
-import java.awt.Graphics;
-import java.awt.Graphics2D;
-import java.awt.Image;
-import java.awt.RenderingHints;
-import java.awt.geom.Point2D;
-import java.awt.image.BufferedImage;
-
-import javax.swing.ImageIcon;
-
-import atlantis.canvas.AWindow;
-import atlantis.event.AEvent;
-import atlantis.graphics.AGraphics;
-import atlantis.graphics.colormap.AColorMap;
-
-/**
- * Stripped down clone of the 2D Projection class
- * Used simply to display event data (as text) in a window
- * with the ATLAS experiment logo, for publications and presentation purposes
- *
- * Also contains rudimentary image scaling code used to scale the ATLAS logo depending
- * on window size
- *
- * @author Tom McLaughlan
- */
-public abstract class AProjectionInfo extends AProjection
-{
- private boolean debug = false;
-
- protected final static String ASPECT_RATIO_1 = "Aspect Ratio 1";
-
- public AProjectionInfo()
- {}
-
- public boolean processLocalCommand(String name)
- {
- return false;
- }
-
- public abstract String getName();
-
- public String getScreenName()
- {
- return getName();
- }
-
- protected Color getBackgroundFillColor(Color[] colorMap)
- {
- return colorMap[parameterStore.get("Color", "BkgFill").getI()];
- }
-
- public void paint(AWindow window, Graphics g)
- {
-
- AEvent event = null;
- AGraphics ag = AGraphics.makeAGraphics(g);
- long time = 0;
-
- if (debug)
- {
- time = System.currentTimeMillis();
- }
- fillBackground(window, ag);
- if (debug)
- {
- System.out.println("fill " + (System.currentTimeMillis() - time));
- time = System.currentTimeMillis();
- }
-
-
- // draw the current event
- event = eventManager.getCurrentEvent();
-
- //If there is no current event do nothing
- if (event == null) return;
-
- } // paint()
-
- protected void fillBackground(AWindow window, AGraphics ag)
- {
- ag.setColor(getBackgroundFillColor(AColorMap.getColors()));
- ag.fillRect(0, 0, window.getWidth(), window.getHeight());
- }
-
- protected static Point2D.Double[] aspectRatioLayout(double width, double height, Dimension wSize)
- {
- double f = Math.min(wSize.width / width, wSize.height / height);
-
- width = wSize.width / f;
- height = wSize.height / f;
-
- Point2D.Double[] corners = new Point2D.Double[3];
-
- corners[0] = new Point2D.Double(-width, +height);
- corners[1] = new Point2D.Double(+width, +height);
- corners[2] = new Point2D.Double(+width, -height);
- return corners;
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/projection/AProjectionLegoPlot.java b/graphics/AtlantisJava/src/atlantis/projection/AProjectionLegoPlot.java
deleted file mode 100755
index 2179a2d7f2e..00000000000
--- a/graphics/AtlantisJava/src/atlantis/projection/AProjectionLegoPlot.java
+++ /dev/null
@@ -1,402 +0,0 @@
-package atlantis.projection;
-
-import java.awt.Color;
-import java.awt.Dimension;
-import java.awt.Graphics;
-import java.awt.event.ActionEvent;
-import java.awt.geom.Point2D;
-import java.util.HashSet;
-import java.util.Set;
-
-import atlantis.canvas.ACanvas;
-import atlantis.canvas.AWindow;
-import atlantis.data.ACalorimeterData;
-import atlantis.data.ADHelix;
-import atlantis.event.AEvent;
-import atlantis.data.ALegoData;
-import atlantis.graphics.ACoord;
-import atlantis.graphics.AGraphics;
-import atlantis.graphics.ALegoDraw;
-import atlantis.graphics.colormap.AColorMap;
-import atlantis.output.ALogInterface;
-import atlantis.output.AOutput;
-import atlantis.utils.AMath;
-
-public class AProjectionLegoPlot extends AProjection2D
-{
- public static byte nLayers = 29;//also used in ALegoData
- //xz and yz are used to define the angle of the eta axis (altered in rotate interaction)
- private static double[] xz;
- private static double[] yz;
- //Variables needed by ALegoDraw and ALegoData that are updated here from changes to the gui value
- public static int defaultScale = parameterStore.get("LegoPlot", "Scale").getI();//set the axis scale (standard, log or sqrt)
- public static int nPhiCells = parameterStore.get("LegoPlot", "nphicells").getI();
- public static int nEtaCells = parameterStore.get("LegoPlot", "netacells").getI();
- public static Color[] defaultColorMap = AColorMap.getColors();
- public static Color[] caloColorMap = AColorMap.getColors();//to allow colouring by energy
- public static boolean reverse = false;//also used by ASynchroCursorsInteraction
- public static int mode = parameterStore.get("LegoPlot", "Mode").getI();
- public static int colorEM, colorHad;
- public static Set colorset = new HashSet();//not updated here
- public static final int minimumofLogScale=(int) Math.round(Math.log10(0.01));// we set 10MeV to lego height 0 on log scale
- protected final static String VIEW_DEFAULT = "View normal";
- protected final static String VIEW_FROM_ABOVE = "View from above";
- protected final static String VIEW_ET_ETA = "View Et v " + AMath.ETA;
- protected final static String VIEW_ET_PHI = "View Et v " + AMath.PHI;
-
- //to select th right drawing options for AOD object towers
- public final static int DRAW_MET = -21;
- public final static int DRAW_MUON = -2;
- public final static int DRAW_ELECTRON = -3;
- public final static int DRAW_PHOTON = -4;
- public final static int DRAW_CLUSTER = -5;
- public final static int DRAW_COMPOSITEPARTICLE = -6;
- public final static int DRAW_BJET = -7;
- public final static int DRAW_TAUJET = -8;
- public final static int DRAW_JET = -9;
-
- public AProjectionLegoPlot() {
- addPopupItem(VIEW_DEFAULT);
- addPopupItem(VIEW_FROM_ABOVE);
- addPopupItem(VIEW_ET_ETA);
- addPopupItem(VIEW_ET_PHI);
- }
-
- @Override
- public void actionPerformed(ActionEvent e)
- {
- String action = e.getActionCommand();
- int index=0;
- AWindow currentWindow = ACanvas.getCanvas().getCurrentWindow();
- index=currentWindow.getIndex();
- Point2D.Double[] corners = currentWindow.getUserCorners();
- double dPhi=0,dEta=0,currentxz=xz[index],currentyz=yz[index];
-
- if (action.equals(VIEW_DEFAULT))
- {
- xz[index]=0.6;
- yz[index]=0.5;
- }
- else if (action.equals(VIEW_FROM_ABOVE))
- {
- xz[index]=0.8;
- yz[index]=0.9;
- }
- else if (action.equals(VIEW_ET_PHI))
- {
- xz[index]=0.0;
- yz[index]=-50;
- }
- else if (action.equals(VIEW_ET_ETA))
- {
- xz[index]=360.0;
- yz[index]=-75;
- }
- dPhi=360*(xz[index]-currentxz);
- dEta=50*(currentyz-yz[index]);
- corners[0].x -= (dPhi);
- corners[0].y -= (dEta);
- corners[1].y -= (dEta);
- currentWindow.setUserCorners(corners);
- //reset the center of detector dot on ZMR
- // TODO: Check if this really is superfluous. I can't find any situation where it
- // sets the interaction group to anything other than its old value. - Ben Waugh 2011-11-09
-// currentWindow.getInteractionManager().setContext(currentWindow.getInteractionToolBar().getSelectedGroup());
- }
-
- @Override
- public void setAspectRatio1(AWindow window)
- {
- AOutput.append("\nNot implemented for this projection\n", ALogInterface.WARNING);
- }
-
- public String getName()
- {
- return "LegoPlot";
- }
-
- public String getXLabel()
- {
- return AMath.PHI;
- }
-
- public String getYLabel()
- {
- return AMath.ETA;
- }
-
- public String getXUnits()
- {
- return AMath.DEGREES;
- }
-
- public String getYUnits()
- {
- return "";
- }
-
- public Point2D.Double getCenter()
- {
- /*in the lego plot the center changes if there is rotation
- however the getCenter is also needed in initialization
- which is before windows are indexed*/
- int index=0;
- double temp=0;
- //check to see if the windows are indexed
- try
- {
- index=ACanvas.getCanvas().getCurrentWindow().getIndex();
- }
- catch(Throwable t)
- {
- temp=0.6;//hasn't indexed windows yet
- }
- if(temp==0)
- temp=xz[index];
- return new Point2D.Double(-360.0*temp,-5.0);
- }
-
- public Point2D.Double[] calculateNoZoomCorners(Dimension wSize)
- {
- if(xz==null)
- {
- xz=new double[ACanvas.getCanvas().getWindowsCount()];
- for(int i=0; i<ACanvas.getCanvas().getWindowsCount(); i++)
- {
- xz[i]=0.6;
- }
- }
- if(yz==null)
- {
- yz=new double[ACanvas.getCanvas().getWindowsCount()];
- for(int i=0; i<ACanvas.getCanvas().getWindowsCount(); i++)
- {
- yz[i]=0.5;
- }
- }
- if(ACanvas.getCanvas().getCurrentWindow()!=null)
- {
- int currentIndex =ACanvas.getCanvas().getCurrentWindow().getIndex();
- xz[currentIndex]=0.6;
- yz[currentIndex]=0.5;
- }
- //called before have windows so xz=0.6 and yz=0.5
- Point2D.Double[] corners = new Point2D.Double[3];
- corners[0]=new Point2D.Double(-360.0*0.6,-5-0.5*50);
- corners[1]=new Point2D.Double(360.0, -5-0.5*50);
- corners[2]=new Point2D.Double(360.0, 5);
- //add on an offset
- corners[0].x-=25.0;
- corners[1].x+=25.0;
- corners[2].x+=25.0;
- corners[2].y+=3.0;
- return corners;
- }
-
- public ACoord getUserPoint(ADHelix dH, double s)
- {
- return nonLinearTransform(dH.getLEGOPoint(s));
- }
-
- @Override
- public void paint(AWindow window, Graphics g)
- {
- // update parameters
- update();
- // Load the event
- AEvent event = eventManager.getCurrentEvent();
- if (event == null)
- return;
- // Create and fill histograms
- double[][][] lego = new double[nPhiCells][nEtaCells][nLayers];
- ALegoData.fillHistograms(event, lego);
- // Find the maximum energy
- double maxEt = 0.0, AODmaxEt = 0.0, LEGOmaxEt = 0.0;
- // loop over histogram data to scale towers and find maxEt
- LEGOmaxEt = ALegoData.findMaxEt(lego);
- maxEt=LEGOmaxEt;
- // loop over AOD data
- AODmaxEt = ALegoData.findAODMaxEt(event);
- //check if user wants to scale to AOD objects rather than cells
- //but only if the AOD max is greater than 0
- if(AODmaxEt==0)
- {
- if(!parameterStore.get("LegoPlot", "ScaleToAOD").isInitialized())
- parameterStore.get("LegoPlot", "ScaleToAOD").initialize();
- parameterStore.get("LegoPlot", "ScaleToAOD").getNameComponent().setEnabled(false);
- }
- else
- {
- if(!parameterStore.get("LegoPlot", "ScaleToAOD").isInitialized())
- parameterStore.get("LegoPlot", "ScaleToAOD").initialize();
- parameterStore.get("LegoPlot", "ScaleToAOD").getNameComponent().setEnabled(true);
- }
- if(AODmaxEt>0 && parameterStore.get("LegoPlot", "ScaleToAOD").getStatus())
- {
- maxEt=AODmaxEt;
- //user can no longer set the scale manually
- if(!parameterStore.get("LegoPlot", "ETAxisHeight").isInitialized())
- parameterStore.get("LegoPlot", "ETAxisHeight").initialize();
- parameterStore.get("LegoPlot", "ETAxisHeight").getNameComponent().setEnabled(false);
- parameterStore.get("LegoPlot", "ETAxisHeight").getValueComponent().setEnabled(false);
- }
- else
- {
- //user can now set the scale maually
- if(!parameterStore.get("LegoPlot", "ETAxisHeight").isInitialized())
- parameterStore.get("LegoPlot", "ETAxisHeight").initialize();
- parameterStore.get("LegoPlot", "ETAxisHeight").getNameComponent().setEnabled(true);
- parameterStore.get("LegoPlot", "ETAxisHeight").getValueComponent().setEnabled(true);
- //check if user has defined a scale
- if (parameterStore.get("LegoPlot", "ETAxisHeight").getD() > 0.0)
- {
- // use the user defined scale
- maxEt = parameterStore.get("LegoPlot", "ETAxisHeight").getD();
- }
- }
- // Find the missing ET
- double met = ALegoData.findMissingEt(window,lego,event);
- // Begin drawing
- AGraphics ag = AGraphics.makeAGraphics(g);
- // Fill the background
- ALegoDraw.fillBackground(window, ag);
- // Draw the legend
- boolean drawLegend=false;
- if(!drawLegend && parameterStore.get("LegoPlot", "MainLegend").getStatus())drawLegend=true;
- if(!drawLegend && parameterStore.get("LegoPlot", "L1EtLegend").getStatus())drawLegend=true;
- if(!drawLegend && parameterStore.get("LegoPlot", "L1Items").getStatus())drawLegend=true;
- if(!drawLegend && parameterStore.get("LegoPlot", "L2Items").getStatus())drawLegend=true;
- if(!drawLegend && parameterStore.get("LegoPlot", "EFItems").getStatus())drawLegend=true;
- if(drawLegend)ALegoDraw.drawLegend(window,ag,event,met,maxEt,AODmaxEt);
-
- // Scale the values for the axis type
- maxEt=scaleMaxET(maxEt,AODmaxEt);
- AODmaxEt=ALegoData.scaleValue(AODmaxEt);
- met=ALegoData.scaleValue(met);
- if(parameterStore.get("LegoPlot","DrawPlot").getStatus())
- {
- // Draw the grid
- //System.out.println("maxEt = "+maxEt+" and LEGOmaxEt = "+LEGOmaxEt);
- ALegoDraw.drawGrid(window, ag, maxEt);
- // Draw the histograms
- ALegoData.drawHistograms(window, ag, event, lego, maxEt, met, AODmaxEt);
- }
- } // paintLego()
-
- /**
- * MaxEt is rounded to get the axis height as well as being scaled
- */
- private static double scaleMaxET(double maxEt, double AODmaxEt)
- {
- //for drawing if maxEt is 0 use AODmaxEt for scaling
- if (maxEt == 0)
- maxEt = AODmaxEt;
- maxEt=ALegoData.scaleValue(maxEt);
- //now round to get axis height
- if (defaultScale ==1 )
- {
- maxEt = Math.ceil(maxEt);
- }
- else if (maxEt > 10.0)
- {
- //set maximum to nearest 5 above maxEt
- maxEt = 5 * (Math.ceil(maxEt / 5.0));
- }
- else if (maxEt < 10.0)
- {
- maxEt = Math.ceil(maxEt);
- }
- return maxEt;
- }
-
- /** Shifts the real value of phi to the screen coord to account for the slope of the eta axis.
- * For reverse of operation use -adjustPhi(window,-phi,eta)
- */
- public static double adjustPhi(AWindow window, double phi, double eta)
- {
- int index=window.getIndex();
- eta+=5;//scale to between 0 and 10
- eta/=10.0;//scale to between 0 and 1
- eta-=1;//scale to between -1 and 0
- eta*=(xz[index]*360.0);//fraction of full offset to take off
- phi+=eta;//take off the fraction
- return phi;//now adjusted from slant of eta axis
- }
-
- public static double getxz(int index)
- {
- return xz[index];
- }
-
- public static double getyz(int index)
- {
- return yz[index];
- }
-
- public static void setxz(int index, double xznew)
- {
- xz[index]=xznew;
- }
-
- public static void setyz(int index, double yznew)
- {
- yz[index]=yznew;
- }
-
- /**check if colouring by EM/HAD
- *
- * @return boolean drawEMHAD
- */
- public static boolean getDrawEMHAD()
- {
- boolean drawEMHAD=false;
- if (mode == 0 && parameterStore.get("LAr", "ColorFunction").getI()==6)
- {
- //Calorimeter Lego
- drawEMHAD=true;
- }
- else if (mode == 1 && parameterStore.get("LVL1TriggerTower", "ColorFunction").getI()==1)
- {
- //Trigger Tower Lego
- drawEMHAD=true;
- }
- return drawEMHAD;
- }
-
- public static void update()
- {
- defaultScale = parameterStore.get("LegoPlot", "Scale").getI();
- nPhiCells = parameterStore.get("LegoPlot", "nphicells").getI();
- nEtaCells = parameterStore.get("LegoPlot", "netacells").getI();
- defaultColorMap = AColorMap.getColors();
- caloColorMap = AColorMap.getColors();
- if (parameterStore.get("LAr", "ColorFunction").getI() == ACalorimeterData.COLOR_FUNC_ENERGY)
- {
- switch (AColorMap.getColorMap())
- {
- case AColorMap.COLOR_MAP_DEFAULT1:
- case AColorMap.COLOR_MAP_DEFAULT2:
- case AColorMap.COLOR_MAP_M4M5:
- case AColorMap.COLOR_MAP_GRAYDET:
- case AColorMap.COLOR_MAP_ORIGINAL:
- // Use colors.
- caloColorMap = AColorMap.getColors(AColorMap.COLOR_MAP_HITCOL);
- break;
- case AColorMap.COLOR_MAP_GRAY:
- case AColorMap.COLOR_MAP_BW:
- // Use grayscale.
- caloColorMap = AColorMap.getColors(AColorMap.COLOR_MAP_GRAY_HITCOL);
- break;
- }
- }
- else if (parameterStore.get("LAr", "ColorFunction").getI() == ACalorimeterData.COLOR_FUNC_TIME)
- {
- caloColorMap = AColorMap.getShades(nLayers+1);
- }
- reverse = parameterStore.get("LegoPlot", "Reverse").getStatus();
- mode = parameterStore.get("LegoPlot", "Mode").getI();
- //Use detector color but add on 12 to get different shade of same color
- colorEM = parameterStore.get("Det", "ECAL" + "Fill").getI() + 12;
- colorHad = parameterStore.get("Det", "HCAL" + "Fill").getI() + 12;
- }
-}//end of LegoProjection class
diff --git a/graphics/AtlantisJava/src/atlantis/projection/AProjectionN3D.java b/graphics/AtlantisJava/src/atlantis/projection/AProjectionN3D.java
deleted file mode 100644
index 1c57d9e8a71..00000000000
--- a/graphics/AtlantisJava/src/atlantis/projection/AProjectionN3D.java
+++ /dev/null
@@ -1,66 +0,0 @@
-package atlantis.projection;
-
-import atlantis.nge.ANFrameManager;
-import java.awt.event.ActionEvent;
-import javax.swing.JMenuItem;
-
-/**
- *
- * @author Adam Davison
- */
-public class AProjectionN3D extends AProjectionNGE {
-
- @Override
- public void configureFrame(ANFrameManager fm) {
- fm.checkProjection3D();
- }
-
- @Override
- public String getName() {
- return "N3D";
- }
-
- @Override
- public String getScreenName() {
- return "N3D";
- }
-
- @Override
- public JMenuItem[] getPopupItems() {
- return null;
- }
-
- @Override
- public String getXLabel() {
- return "X";
- }
-
- @Override
- public String getYLabel() {
- return "Y";
- }
-
- @Override
- public String getXUnits() {
- return "m";
- }
-
- @Override
- public String getYUnits() {
- return "m";
- }
-
- @Override
- public void setScales() {
-
- }
-
- @Override
- public boolean processLocalCommand(String name) {
- return false;
- }
-
- public void actionPerformed(ActionEvent e) {
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/projection/AProjectionNGE.java b/graphics/AtlantisJava/src/atlantis/projection/AProjectionNGE.java
deleted file mode 100644
index 3f9294ff858..00000000000
--- a/graphics/AtlantisJava/src/atlantis/projection/AProjectionNGE.java
+++ /dev/null
@@ -1,143 +0,0 @@
-package atlantis.projection;
-
-import atlantis.canvas.AWindow;
-import atlantis.nge.ANFrameManager;
-import atlantis.nge.ANManager;
-import atlantis.utils.ALogger;
-import com.sun.opengl.util.Screenshot;
-import java.awt.Graphics;
-import java.awt.image.BufferedImage;
-import javax.media.opengl.GLAutoDrawable;
-import javax.media.opengl.GLEventListener;
-
-/**
- * This projection bridges between the traditional canvas and the new graphics
- * engine code. Essentially it looks like an old style projection but when
- * asked to paint it calls the new code and returns an image
- *
- * @author Adam Davison
- */
-public abstract class AProjectionNGE extends AProjection implements GLEventListener {
-
- private static ALogger logger = ALogger.getLogger(AProjectionNGE.class);
-
- //private GLPbuffer m_buf = null;
- private BufferedImage m_img = null;
- private int m_h = 0;
- private int m_w = 0;
-
- private AWindow m_currentWindow;
-
- public AProjectionNGE() {
-
- }
-
-/* @Override
- public String getName() {
- return "NGE";
- }
-
- @Override
- public String getScreenName() {
- return "NGE";
- }*/
-
- public abstract void configureFrame(ANFrameManager fm);
-
- @Override
- public void paint(AWindow window, Graphics g) {
-
- m_currentWindow = window;
-
- long before = System.nanoTime();
-
- m_w = window.getWidth();
- m_h = window.getHeight();
-
- //logger.info("Window w: " + m_w + " h: " + m_h);
-
- //System.out.println("TAG A");
-
- configureFrame(ANManager.getManager().getFrameManager(window));
-
- //System.out.println("TAG B");
-
- ANManager.getManager().requestBufferDraw(m_w, m_h, this);
-
- //System.out.println("TAG C");
-
- // TODO: Check m_img isn't null
- //g.drawImage(m_img, 0, 0, m_w, m_h, null);
- g.drawImage(m_img, 0, 0, m_w, m_h, 0, m_img.getHeight()-m_h, m_w, m_img.getHeight(), null);
-
- //System.out.println("TAG D copyback done");
-
- long after = System.nanoTime();
- //System.out.println("Draw took: " + (after - before)/1000);
-
- //ANManager.getManager().requestReschedule(window);
- }
-
-/* @Override
- public JMenuItem[] getPopupItems() {
- return null;
- //throw new UnsupportedOperationException("Not supported yet.");
- }
-
- @Override
- public String getXLabel() {
- return "XLABEL";
- }
-
- @Override
- public String getYLabel() {
- return "YLABEL";
- }
-
- @Override
- public String getXUnits() {
- return "";
- //throw new UnsupportedOperationException("Not supported yet.");
- }
-
- @Override
- public String getYUnits() {
- return "";
- //throw new UnsupportedOperationException("Not supported yet.");
- }
-
- @Override
- public void setScales() {
- //throw new UnsupportedOperationException("Not supported yet.");
- }
-
- @Override
- public boolean processLocalCommand(String name) {
- return false;
- //throw new UnsupportedOperationException("Not supported yet.");
- }
-
- public void actionPerformed(ActionEvent e) {
- System.out.println(e.toString());
- //throw new UnsupportedOperationException("Not supported yet.");
- }*/
-
- public void init(GLAutoDrawable arg0) {
- }
-
- public void display(GLAutoDrawable arg0) {
-
- //System.out.println("DISPLAY IN NGE");
- ANManager.getManager().getFrameManager(m_currentWindow).display(arg0, m_w, m_h);
- //System.out.println("PAINT DONE");
- m_img = Screenshot.readToBufferedImage(ANManager.getNextPower2(m_w),
- ANManager.getNextPower2(m_h));
- //System.out.println("COPIED BACK");
- }
-
- public void reshape(GLAutoDrawable arg0, int arg1, int arg2, int arg3, int arg4) {
- }
-
- public void displayChanged(GLAutoDrawable arg0, boolean arg1, boolean arg2) {
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/projection/AProjectionNPhysics.java b/graphics/AtlantisJava/src/atlantis/projection/AProjectionNPhysics.java
deleted file mode 100644
index e608bd9e51c..00000000000
--- a/graphics/AtlantisJava/src/atlantis/projection/AProjectionNPhysics.java
+++ /dev/null
@@ -1,95 +0,0 @@
-package atlantis.projection;
-
-import atlantis.nge.ANAnimVar;
-import atlantis.nge.ANFrameManager;
-import atlantis.nge.ANProjectionPhysics;
-import atlantis.utils.AMath;
-import java.awt.event.ActionEvent;
-import java.awt.event.ActionListener;
-import javax.swing.JMenuItem;
-
-/**
- *
- * @author Adam Davison, Mark Stockton
- */
-public class AProjectionNPhysics extends AProjectionNGE {
-
- private ANProjectionPhysics m_p = null;
- private ANFrameManager m_fm = null;
-
- @Override
- public void configureFrame(ANFrameManager fm) {
- m_fm = fm;
- m_p = fm.checkProjectionPhysics();
- }
-
- @Override
- public String getName() {
- return "NPhysics";
- }
-
- @Override
- public String getScreenName() {
- return "NPhysics";
- }
-
- @Override
- public JMenuItem[] getPopupItems() {
-
- JMenuItem phi = new JMenuItem(AMath.ETA + " view");
- phi.addActionListener(new ActionListener() {
- public void actionPerformed(ActionEvent e) {
- phiView();
- }
- });
-
- JMenuItem[] i = {
- phi
- };
- return i;
- }
-
- @Override
- public String getXLabel() {
- return "X";
- }
-
- @Override
- public String getYLabel() {
- return "Y";
- }
-
- @Override
- public String getXUnits() {
- return "m";
- }
-
- @Override
- public String getYUnits() {
- return "m";
- }
-
- @Override
- public void setScales() {
-
- }
-
- @Override
- public boolean processLocalCommand(String name) {
- return false;
- }
-
- public void actionPerformed(ActionEvent e) {
- }
-
- public void phiView() {
-
- ANAnimVar pelev = m_p.getElevVar();
- ANAnimVar pphi = m_p.getPhiVar();
-
- m_fm.getAnimationManager().scheduleAnimation(pelev, 0.0, 1.0, pelev.getValue(), -90.0);
- m_fm.getAnimationManager().scheduleAnimation(pphi, 0.0, 1.0, pphi.getValue(), 0.0);
-
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/projection/AProjectionNYX.java b/graphics/AtlantisJava/src/atlantis/projection/AProjectionNYX.java
deleted file mode 100644
index fb95d8ff95a..00000000000
--- a/graphics/AtlantisJava/src/atlantis/projection/AProjectionNYX.java
+++ /dev/null
@@ -1,71 +0,0 @@
-package atlantis.projection;
-
-import atlantis.nge.ANFrameManager;
-import java.awt.event.ActionEvent;
-import javax.swing.JMenuItem;
-
-/**
- *
- * @author Adam Davison
- */
-public class AProjectionNYX extends AProjectionNGE {
-
- public AProjectionNYX() {
-
- }
-
- @Override
- public void configureFrame(ANFrameManager fm) {
- fm.checkProjectionYX();
- }
-
- @Override
- public String getName() {
- return "NYX";
- }
-
- @Override
- public String getScreenName() {
- return "NYX";
- }
-
- @Override
- public JMenuItem[] getPopupItems() {
- return null;
- }
-
- @Override
- public String getXLabel() {
- return "X";
- }
-
- @Override
- public String getYLabel() {
- return "Y";
- }
-
- @Override
- public String getXUnits() {
- return "m";
- }
-
- @Override
- public String getYUnits() {
- return "m";
- }
-
- @Override
- public void setScales() {
-
- }
-
- @Override
- public boolean processLocalCommand(String name) {
- return false;
- }
-
- public void actionPerformed(ActionEvent e) {
- //
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/projection/AProjectionPhi.java b/graphics/AtlantisJava/src/atlantis/projection/AProjectionPhi.java
deleted file mode 100755
index 92785454bb5..00000000000
--- a/graphics/AtlantisJava/src/atlantis/projection/AProjectionPhi.java
+++ /dev/null
@@ -1,73 +0,0 @@
-package atlantis.projection;
-
-import atlantis.parameters.AParameter;
-import atlantis.parameters.APar;
-import atlantis.utils.AMath;
-import atlantis.utils.AVector;
-import java.awt.geom.*;
-
-/**
- * Base class of all phi projections
- */
-
-public abstract class AProjectionPhi extends AProjection2D {
-
- public String getScreenName()
- {
- return AMath.PHI+ getXLabel();
- }
-
- public String getYLabel() {
- return AMath.PHI;
- }
-
- public String getYUnits() {
- return AMath.DEGREES;
- }
-
- public double getMinRho() {
- return 2.;
- }
-
- public Point2D.Double getCenter() {
- int phiWrap=parameterStore.get(getName(), "PhiWrap").getI();
-
- return new Point2D.Double(0, (360+phiWrap)/2);
- }
-
- public Point2D.Double[] validateCorners(Point2D.Double[] corners) {
- if(super.validateCorners(corners)==null)
- return null;
- int phiWrap=parameterStore.get(getName(), "PhiWrap").getI();
- AParameter initialFramePar=parameterStore.get(getName(), "InitialFrame");
-
- if(Math.abs(getMaxPhi(corners)-getMinPhi(corners))>(360+phiWrap))
- return null;
- if(getMaxPhi(corners)>(initialFramePar.getI()*360+2*360-90))
- initialFramePar.setI(initialFramePar.getI()+1);
- if(getMinPhi(corners)<(initialFramePar.getI()*360+90))
- initialFramePar.setI(initialFramePar.getI()-1);
- return corners;
- }
-
- private static double getMinPhi(Point2D.Double[] corners) {
- double phiMin=corners[0].y;
-
- for(int i=0; i<corners.length; i++)
- if(corners[i].y<phiMin) phiMin=corners[i].y;
- AVector v12=new AVector(corners[1], corners[2]);
-
- return Math.min(phiMin, corners[0].y+v12.dy);
- }
-
- private static double getMaxPhi(Point2D.Double[] corners) {
- double phiMax=corners[0].y;
-
- for(int i=0; i<corners.length; i++)
- if(corners[i].y>phiMax) phiMax=corners[i].y;
- AVector v12=new AVector(corners[1], corners[2]);
-
- return Math.max(phiMax, corners[0].y+v12.dy);
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/projection/AProjectionRZ.java b/graphics/AtlantisJava/src/atlantis/projection/AProjectionRZ.java
deleted file mode 100755
index a47d1e0f05f..00000000000
--- a/graphics/AtlantisJava/src/atlantis/projection/AProjectionRZ.java
+++ /dev/null
@@ -1,68 +0,0 @@
-package atlantis.projection;
-
-import atlantis.data.ADHelix;
-import atlantis.graphics.ACoord;
-import atlantis.utils.AMath;
-import java.awt.*;
-import java.awt.geom.*;
-import atlantis.event.*;
-import atlantis.parameters.*;
-
-public class AProjectionRZ extends AProjection2D {
-
- public AProjectionRZ() {
- addPopupItem(ASPECT_RATIO_1);
- }
-
- public String getName() {
- return "RZ";
- }
-
- public String getScreenName()
- {
- return AMath.RHO + "Z";
- }
-
- public String getXLabel() {
- return "Z";
- }
-
- public String getYLabel() {
- return AMath.RHO;
- }
-
- public String getXUnits() {
- return "(cm)";
- }
-
- public String getYUnits() {
- return "(cm)";
- }
-
- public Point2D.Double getCenter() {
- return new Point2D.Double(0, 0);
- }
-
- public Point2D.Double[] calculateNoZoomCorners(Dimension wSize) {
- double radius=parameterStore.get("Projection", "Radius").getD();
- double length=parameterStore.get("Projection", "Length").getD();
- return aspectRatioLayout(length, radius, wSize);
- }
-
- public ACoord getUserPoint(ADHelix dH, double s) {
- return nonLinearTransform(dH.getRZPoint(s));
- }
-
- public ACoord nonLinearTransform(ACoord user) {
- return nonLinearTransform2D(user, getName());
- }
-
- public ACoord inverseNonLinearTransform(ACoord user) {
- return inverseNonLinearTransform2D(user, getName());
- }
-
- public static int[] getAxisMapping() {
- return new int[] {2, 1, 0};
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/projection/AProjectionTrackResidual.java b/graphics/AtlantisJava/src/atlantis/projection/AProjectionTrackResidual.java
deleted file mode 100644
index fc07eddcbea..00000000000
--- a/graphics/AtlantisJava/src/atlantis/projection/AProjectionTrackResidual.java
+++ /dev/null
@@ -1,167 +0,0 @@
-package atlantis.projection;
-
-import java.awt.Dimension;
-import java.awt.Graphics;
-import java.awt.geom.Point2D;
-
-import atlantis.canvas.AWindow;
-import atlantis.data.ADHelix;
-import atlantis.data.ATrackResidualData;
-import atlantis.graphics.ACoord;
-import atlantis.graphics.AGraphics;
-import atlantis.parameters.APar;
-import atlantis.utils.AMath;
-
-public class AProjectionTrackResidual extends AProjection2D
-{
- private ATrackResidualData residual;
- private String residualType;
- private double xLength;
- private double yLength = 1.0;
-
- /**
- * @param residual The residual to set.
- */
- public void setResidual(ATrackResidualData residual)
- {
- this.residual = residual;
- }
-
- public ATrackResidualData getResidual()
- {
- return residual;
- }
-
- public void setResidualType(String type)
- {
- residualType = type;
- }
-
- public String getResidualType()
- {
- return residualType;
- }
-
- public String getName()
- {
- return "TrackResidual";
- }
-
- public String getXLabel()
- {
- return "Index";
- }
-
- public String getYLabel()
- {
- return "Res";
- }
-
- public String getXUnits()
- {
- return "";
- }
-
- public String getYUnits()
- {
- return "(mm)";
- }
-
- public double getXLength()
- {
- return xLength;
- }
-
- public double getYLength()
- {
- return yLength;
- }
-
- public Point2D.Double getCenter()
- {
- return new Point2D.Double(0.0, 0.0);
- }
-
- // not useful for this projection, only put here to be compatible with
- // other code
- public Point2D.Double[] calculateNoZoomCorners(Dimension wSize)
- {
- Point2D.Double[] corners=new Point2D.Double[3];
-
- corners[0]=new Point2D.Double(0., 2.);
- corners[1]=new Point2D.Double(100., 2.);
- corners[2]=new Point2D.Double(100., -2.);
- return corners;
- }
-
- public Point2D.Double[] calculateNoZoomCorners()
- {
- float[] dataArray;
- if(residualType.equals(ATrackResidualData.RESIDUAL_X))
- dataArray = residual.getResLoc1();
- else
- dataArray = residual.getPullLoc1();
-
- xLength = dataArray.length;
- if(parameterStore.get(getName(), "Scale").getI() == 0) // linear
- {
- yLength = (AMath.maxAbsInArray(dataArray) + 0.1) * 2;
- }
- else // logarithmic
- {
- float[] dataArrayCopy = new float[dataArray.length];
- for(int i=0; i<dataArrayCopy.length; ++i)
- {
- if(dataArray[i] == -99.0f)
- dataArrayCopy[i] = 0.0f;
- else
- dataArrayCopy[i] = dataArray[i];
- }
- double minValue = (double) AMath.minAbsInArray(dataArrayCopy);
- double maxValue = (double) AMath.maxAbsInArray(dataArrayCopy);
- double magnitude;
-
- // all data is either invalid or 0
- if(maxValue == 0.0 && minValue == 0.0)
- {
- magnitude = 1;
- residual.setLogMagnitudeMin(-1.0);
- }
- else if (minValue == 0.0)
- {
- double minNonZeroValue = (double) AMath.minNonZeroAbsInArray(dataArrayCopy);
- magnitude = Math.floor(Math.log10(maxValue)) -
- Math.floor(Math.log10(minNonZeroValue))+ 1.0;
- residual.setLogMagnitudeMin(Math.floor(Math.log10(minNonZeroValue)));
- }
- else
- {
- magnitude = Math.floor(Math.log10(maxValue)) -
- Math.floor(Math.log10(minValue))+ 1.0;
- residual.setLogMagnitudeMin(Math.floor(Math.log10(minValue)));
- }
- yLength = magnitude * 2;
- }
- Point2D.Double[] corners = new Point2D.Double[3];
-
- corners[0] = new Point2D.Double(0., yLength/2);
- corners[1] = new Point2D.Double(xLength, yLength/2);
- corners[2] = new Point2D.Double(xLength, -yLength/2);
- return corners;
- }
-
- public ACoord getUserPoint(ADHelix dH, double s)
- {
- return ACoord.NO_DATA;
- }
-
- public void paint(AWindow window, Graphics g)
- {
- AGraphics ag = AGraphics.makeAGraphics(g);
-
- fillBackground(window, ag);
- if(residual != null)
- residual.draw(window, ag, this);
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/projection/AProjectionVP.java b/graphics/AtlantisJava/src/atlantis/projection/AProjectionVP.java
deleted file mode 100755
index 210d848d447..00000000000
--- a/graphics/AtlantisJava/src/atlantis/projection/AProjectionVP.java
+++ /dev/null
@@ -1,169 +0,0 @@
-package atlantis.projection;
-
-import atlantis.graphics.ACoord;
-import atlantis.graphics.colormap.AColorMap;
-import atlantis.output.ALogInterface;
-import atlantis.output.AOutput;
-import atlantis.parameters.AParameter;
-import atlantis.parameters.APar;
-import atlantis.utils.AMath;
-
-import java.awt.Color;
-import java.awt.Dimension;
-import java.awt.geom.Point2D;
-
-import atlantis.canvas.AWindow;
-import atlantis.data.ADHelix;
-
-public class AProjectionVP extends AProjectionPhi {
-
- // this should be moved ugly
- // sign is which arm of the v is being drawn at this point in time
- public static int sign;
-
- private static double qcp=0.00035936;
-
- // Display modes as defined in the configuration file.
- public static final int MODE_STANDARD = 0;
- public static final int MODE_SPACEPOINT = 1;
- public static final int MODE_TRT_DRIFT_CIRCLE = 2;
- public static final int MODE_ECAL_LAYER_0 = 3;
- public static final int MODE_ECAL_LAYER_1 = 4;
- public static final int MODE_ECAL_LAYER_2 = 5;
- public static final int MODE_ECAL_LAYER_3 = 6;
- public static final int MODE_HCAL_LAYER_0 = 7;
- public static final int MODE_HCAL_LAYER_1 = 8;
- public static final int MODE_HCAL_LAYER_2 = 9;
- public static final int MODE_HCAL_LAYER_3 = 10;
-
- public static final double MAX_ETA = 5.;
-
- private static boolean first=true;
- // draw V apex at this rho or Z
- private static double[] rhoMode=new double[]
- { 55., 55., 108., 138., 154., 173., 193., 244., 306., 368., 368.};
- private static double[] zMode=new double[]
- {277., 277., 338., 360., 374., 394., 414., 441., 482., 561., 561.};
- // zoom in another projection to this rho and Z
- private static double[] rhoZoomMode=new double[]
- { 56., 56., 110., 200., 200., 200., 200., 400., 400., 400., 400.};
- private static double[] zZoomMode=new double[]
- {280., 280., 340., 440., 440., 440., 440., 374., 374., 374., 374.};
-
- private static AParameter modePar;
- private static AParameter rMaxPar;
- private static AParameter zMaxPar;
- private static AParameter gradientPar;
- private static AParameter zVtxPar;
-
- public AProjectionVP() {}
-
- public String getName() {
- return "VP";
- }
-
- public String getXLabel() {
- return AMath.ETA;
- }
-
- public String getXUnits() {
- return "";
- }
-
- public void setAspectRatio1(AWindow window)
- {
- AOutput.append("\nNot implemented for this projection\n", ALogInterface.WARNING);
- }
-
- public Point2D.Double[] calculateNoZoomCorners(Dimension wSize) {
- Point2D.Double[] corners=new Point2D.Double[3];
-
- corners[0]=new Point2D.Double(-5.0, 360);
- corners[1]=new Point2D.Double(5.0, 360);
- corners[2]=new Point2D.Double(5.0, 0);
- return corners;
- }
-
- protected Color getBackgroundFillColor(Color[] colorMap) {
- int mode=parameterStore.get("VP", "Mode").getI();
-
- switch(mode) {
- case MODE_SPACEPOINT:
- return colorMap[parameterStore.get("Det", "SIL"+"Fill").getI()];
- case MODE_TRT_DRIFT_CIRCLE:
- return colorMap[parameterStore.get("Det", "TRT"+"Fill").getI()];
- case MODE_ECAL_LAYER_0:
- case MODE_ECAL_LAYER_1:
- case MODE_ECAL_LAYER_2:
- case MODE_ECAL_LAYER_3:
- return colorMap[parameterStore.get("Det", "ECAL"+"Fill").getI()];
- case MODE_HCAL_LAYER_0:
- case MODE_HCAL_LAYER_1:
- case MODE_HCAL_LAYER_2:
- case MODE_HCAL_LAYER_3:
- return colorMap[parameterStore.get("Det", "HCAL"+"Fill").getI()];
- default:
- return colorMap[parameterStore.get("Color", "Bkg"+"Fill").getI()];
- }
- }
-
- public ACoord getUserPoint(ADHelix dH, double s) {
- return dH.getVPPoint(s, this.sign);
- }
-
- public static double getDeltaEta(double rho, double z) {
- if(first) {
- modePar=parameterStore.get("VP", "Mode");
- rMaxPar=parameterStore.get("VP", "RMax");
- zMaxPar=parameterStore.get("VP", "ZMax");
- gradientPar=parameterStore.get("VP", "Gradient");
- zVtxPar=parameterStore.get("VP", "ZVtx");
- first=false;
- }
- double fact=qcp*gradientPar.getD();
- int mode=modePar.getI();
- double zLayer=zMode[mode];
-
- if(zMaxPar.getStatus())
- zLayer=Math.min(zLayer, zMaxPar.getD());
- double rhoLayer=rhoMode[mode];
-
- if(rMaxPar.getStatus())
- rhoLayer=Math.min(rhoLayer, rMaxPar.getD());
- double zVtx=zVtxPar.getD();
- double zsign=1.;
-
- if(z<0.) zsign=-1.;
- if(Math.abs((z-zVtx)/rho)<(zLayer-zVtx)/rhoLayer)
- return fact*(rhoLayer-rho);
- else
- return fact*rho*(zsign*zLayer-z)/(z-zVtx);
- }
-
- public static double getRhoVPlot() {
- double rhoLayer=rhoMode[parameterStore.get("VP", "Mode").getI()];
- AParameter rMaxPar=parameterStore.get("VP", "RMax");
-
- if(rMaxPar.getStatus())
- rhoLayer=Math.min(rhoLayer, rMaxPar.getD());
- return rhoLayer;
- }
-
- public static double getZVPlot() {
- double zLayer=zMode[parameterStore.get("VP", "Mode").getI()];
- AParameter zMaxPar=parameterStore.get("VP", "ZMax");
-
- if(zMaxPar.getStatus())
- zLayer=Math.min(zLayer, zMaxPar.getD());
- return zLayer;
- }
-
- public static double getRhoZoomVPlot() {
- return rhoZoomMode[parameterStore.get("VP", "Mode").getI()];
- }
-
- public static double getZZoomVPlot() {
- return zZoomMode[parameterStore.get("VP", "Mode").getI()];
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/projection/AProjectionXZ.java b/graphics/AtlantisJava/src/atlantis/projection/AProjectionXZ.java
deleted file mode 100755
index 24f2d9b17cc..00000000000
--- a/graphics/AtlantisJava/src/atlantis/projection/AProjectionXZ.java
+++ /dev/null
@@ -1,81 +0,0 @@
-package atlantis.projection;
-
-import atlantis.data.ADHelix;
-import atlantis.graphics.ACoord;
-import atlantis.parameters.APar;
-import atlantis.utils.AMath;
-import atlantis.event.*;
-import java.awt.*;
-import java.awt.geom.*;
-
-public class AProjectionXZ extends AProjection2D {
-
- public AProjectionXZ() {
- addPopupItem(ASPECT_RATIO_1);
- }
-
- public String getName() {
- return "XZ";
- }
-
- public String getXLabel() {
- return "Z";
- }
-
- public String getYLabel() {
- return "X"+AMath.PRIME;
- }
-
- public String getXUnits() {
- return "(cm)";
- }
-
- public String getYUnits() {
- return "(cm)";
- }
-
- public Point2D.Double getCenter() {
- return new Point2D.Double(0, 0);
- }
-
- public Point2D.Double[] calculateNoZoomCorners(Dimension wSize) {
- double radius=parameterStore.get("Projection", "TrackingRadius").getD();
- double length=parameterStore.get("Projection", "TrackingLength").getD();
- return aspectRatioLayout(length, radius, wSize);
- }
-
- public static double getPhi() {
- return parameterStore.get("XZ", "Phi").getD();
- }
-
- public static double[][] getRotationMatrix() {
- double phi=Math.toRadians(getPhi());
- double cos=Math.cos(phi);
- double sin=Math.sin(phi);
- double[][] r=new double[3][3];
-
- r[0][0]=cos;
- r[1][1]=cos;
- r[2][2]=1.;
- r[0][1]=sin;
- r[1][0]=-sin;
- return r;
- }
-
- public static int[] getAxisMapping() {
- return new int[] {2, 0, 1};
- }
-
- public ACoord getUserPoint(ADHelix dH, double s) {
- return nonLinearTransform(dH.getXZPoint(s));
- }
-
- public ACoord nonLinearTransform(ACoord user) {
- return nonLinearTransform2D(user, getName());
- }
-
- public ACoord inverseNonLinearTransform(ACoord user) {
- return inverseNonLinearTransform2D(user, getName());
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/projection/AProjectionYX.java b/graphics/AtlantisJava/src/atlantis/projection/AProjectionYX.java
deleted file mode 100755
index ef2a7d28db6..00000000000
--- a/graphics/AtlantisJava/src/atlantis/projection/AProjectionYX.java
+++ /dev/null
@@ -1,307 +0,0 @@
-package atlantis.projection;
-
-import java.awt.Dimension;
-import java.awt.Graphics;
-import java.awt.Graphics2D;
-import java.awt.geom.Point2D;
-
-import javax.swing.ImageIcon;
-
-import atlantis.canvas.AWindow;
-import atlantis.data.ADHelix;
-import atlantis.globals.AGlobals;
-import atlantis.graphics.ACoord;
-import atlantis.graphics.ADrawParameters;
-import atlantis.graphics.AGraphics;
-import atlantis.graphics.colormap.AColorMap;
-import atlantis.interactions.AZMRInteraction;
-import atlantis.parameters.AParameter;
-import atlantis.utils.ALogger;
-import atlantis.utils.AUtilities;
-
-public class AProjectionYX extends AProjection2D
-{
- private static ALogger logger = ALogger.getLogger(AProjectionYX.class);
-
- // Different display modes, as defined in the configuration file.
- public static final int MODE_STANDARD = 0;
- public static final int MODE_TGC_INNER = 1;
- public static final int MODE_TGC_MIDDLE_1 = 2;
- public static final int MODE_TGC_MIDDLE_2 = 3;
- public static final int MODE_TGC_MIDDLE_3 = 4;
- public static final int MODE_MDT_INNER = 5;
- public static final int MODE_MDT_EXTENSION = 6;
- public static final int MODE_MDT_MIDDLE = 7;
- public static final int MODE_MDT_OUTER = 8;
- public static final int MODE_FCAL_EM = 9;
- public static final int MODE_FCAL_HAD_1 = 10;
- public static final int MODE_FCAL_HAD_2 = 11;
- public static final int MODE_LAR_ENDCAP_PRESAMPLER = 12;
- public static final int MODE_LAR_ENDCAP_1 = 13;
- public static final int MODE_LAR_ENDCAP_2 = 14;
- public static final int MODE_LAR_ENDCAP_3 = 15;
- public static final int MODE_HEC_1 = 16;
- public static final int MODE_HEC_2 = 17;
- public static final int MODE_HEC_3 = 18;
- public static final int MODE_HEC_4 = 19;
- public static final int MODE_LAR_ENDCAP_SUMMED = 20;
- public static final int MODE_HEC_SUMMED = 21;
- public static final int MODE_MBTS = 22;
-
- public AProjectionYX()
- {
- addPopupItem(ASPECT_RATIO_1);
- }
-
- public String getName()
- {
- return "YX";
- }
-
- public String getXLabel()
- {
- return "X";
- }
-
- public String getYLabel()
- {
- return "Y";
- }
-
- public String getXUnits()
- {
- return "(cm)";
- }
-
- public String getYUnits()
- {
- return "(cm)";
- }
-
- public Point2D.Double getCenter()
- {
- return new Point2D.Double(0, 0);
- }
-
- public Point2D.Double[] calculateNoZoomCorners(Dimension wSize)
- {
- // should not be here
- parameterStore.get(getName(), "Phi").setD(0.);
- double radius = parameterStore.get("Projection", "Radius").getD();
- return aspectRatioLayout(radius, radius, wSize);
- }
-
- public static double[][] getRotationMatrix()
- {
- double[][] r = new double[3][3];
-
- r[0][0] = 1.;
- r[1][1] = 1.;
- r[2][2] = 1.;
- return r;
- }
-
- public static int[] getAxisMapping()
- {
- return new int[] { 0, 1, 2 };
- }
-
- public ACoord getUserPoint(ADHelix dH, double s)
- {
- return nonLinearTransform(dH.getYXPoint(s));
- }
-
- public ACoord nonLinearTransform(ACoord user)
- {
- AParameter fishEyePar = parameterStore.get(getName(), "FishEye");
-
- if (fishEyePar.getStatus())
- {
- double[] x, y;
- double r, fact;
- double fishEye = 0.001 * fishEyePar.getD();
- double rTo = parameterStore.get(getName(), "rTo").getD();
-
- for (int j = 0; j < user.hv[0].length; ++j)
- {
- x = user.hv[0][j];
- y = user.hv[1][j];
- for (int i = 0; i < x.length; ++i)
- {
- r = Math.sqrt(x[i] * x[i] + y[i] * y[i]);
- fact = (1 + fishEye * rTo) / (1 + fishEye * r);
- x[i] *= fact;
- y[i] *= fact;
- }
- }
- }
- AParameter clockPar = parameterStore.get(getName(), "Clock");
-
- if (clockPar.getStatus())
- {
- double clock = Math.PI / clockPar.getD();
- double phiClock = Math.toRadians(parameterStore.get(getName(), "Phi").getD());
-
- for (int j = 0; j < user.hv[0].length; ++j)
- {
- double[] x = user.hv[0][j];
- double[] y = user.hv[1][j];
-
- for (int i = 0; i < x.length; ++i)
- {
- double phi = Math.atan2(y[i], x[i]);
-
- if (phi < 0.)
- phi += 2 * Math.PI;
- double rho = Math.sqrt(x[i] * x[i] + y[i] * y[i]);
- double dPhi = phi - phiClock;
-
- if (dPhi > Math.PI)
- dPhi -= 2 * Math.PI;
- else if (dPhi <= -Math.PI)
- dPhi += 2 * Math.PI;
- double fact = (clock + Math.PI) / (clock + Math.abs(dPhi));
-
- phi = phiClock + fact * dPhi;
- x[i] = rho * Math.cos(phi);
- y[i] = rho * Math.sin(phi);
- }
- }
- }
-
- return user;
- }
-
- public ACoord inverseNonLinearTransform(ACoord user)
- {
- AParameter fishEyePar = parameterStore.get(getName(), "FishEye");
-
- if (fishEyePar.getStatus())
- {
- double[] x, y;
- double r, fact;
- double fishEye = 0.001 * fishEyePar.getD();
- double rTo = parameterStore.get(getName(), "rTo").getD();
-
- for (int j = 0; j < user.hv[0].length; ++j)
- {
- x = user.hv[0][j];
- y = user.hv[1][j];
- for (int i = 0; i < x.length; ++i)
- {
- r = Math.sqrt(x[i] * x[i] + y[i] * y[i]);
- fact = 1 / (1 + fishEye * (rTo - r));
- x[i] *= fact;
- y[i] *= fact;
- }
- }
- }
- AParameter clockPar = parameterStore.get(getName(), "Clock");
-
- if (clockPar.getStatus())
- {
- double clock = Math.PI / clockPar.getD();
- double phiClock = Math.toRadians(parameterStore.get(getName(), "Phi").getD());
-
- for (int j = 0; j < user.hv[0].length; ++j)
- {
- double[] x = user.hv[0][j];
- double[] y = user.hv[1][j];
-
- for (int i = 0; i < x.length; ++i)
- {
- double phi = Math.atan2(y[i], x[i]);
-
- if (phi < 0.)
- phi += 2 * Math.PI;
- double dPhi = phi - phiClock;
-
- if (dPhi > Math.PI)
- dPhi -= 2 * Math.PI;
- else if (dPhi <= -Math.PI)
- dPhi += 2 * Math.PI;
-
- double dPhiPrime = (clock * dPhi) / (clock + Math.PI - Math.abs(dPhi));
-
- phi = phiClock + dPhiPrime;
-
- double rho = Math.sqrt(x[i] * x[i] + y[i] * y[i]);
-
- x[i] = rho * Math.cos(phi);
- y[i] = rho * Math.sin(phi);
- }
- }
- }
- return user;
- }
-
- public void paint(AWindow window, Graphics g)
- {
- super.paint(window, g);
-
- // draw RZ cutting plane
- if (parameterStore.get("YX", "RZCuttingPlane").getStatus())
- {
- AGraphics ag = AGraphics.makeAGraphics(g);
- final ADrawParameters drawParameters =
- new ADrawParameters(true, AColorMap.WH, 4, 1, 0, AGraphics.SYMBOL_FILLED_BOX);
- ag.updateDrawParameters(drawParameters);
- final double RHO_MAX = 3000.0;
-
- double phi = Math.toRadians(parameterStore.get("RZ", "Phi").getD()) - Math.PI / 2;
- double cosPhi = Math.cos(phi);
- double sinPhi = Math.sin(phi);
- String iconPath = AGlobals.instance().getHomeDirectory() + "img" + System.getProperty("file.separator");
-
- // draw the cutting plane
- Point2D.Double p1 = window.calculateDisplay(nonLinearTransform(RHO_MAX * cosPhi, RHO_MAX * sinPhi));
- Point2D.Double p2 = window.calculateDisplay(nonLinearTransform(-RHO_MAX * cosPhi, -RHO_MAX * sinPhi));
-
- ag.drawLine(p1.x, p1.y, p2.x, p2.y);
-
- // draw the arrows
- Point2D.Double p3 = window.calculateDisplay(nonLinearTransform(1500 * Math.cos(phi+.07), 1500 * Math.sin(phi+.07)));
- Point2D.Double p4 = window.calculateDisplay(nonLinearTransform(1500 * Math.cos(phi+3.21), 1500 * Math.sin(phi+3.21)));
-
- ImageIcon upArrow = AUtilities.getFileAsImageIcon(iconPath+"uparrow.png");
- ImageIcon downArrow = AUtilities.getFileAsImageIcon(iconPath+"downarrow.png");
-
- Graphics2D g2d = (Graphics2D) g;
-
- g2d.drawImage(upArrow.getImage(),(int) p3.x,(int) p3.y,null);
- g2d.drawImage(downArrow.getImage(),(int) p4.x,(int) p4.y,null);
-
- }
- }
-
- /** This function ensures that when the aspect ratio of the display changes
- * the aspect ratio of the contents of a YX projection remain at the same
- * aspect ratio.
- *
- * It uses the (thankfully) static methods of AZMRInteraction to do the
- * actual zooming, which can involve some non-trivial mathematics...
- * -- Adam Davison
- */
- @Override
- public void aspectRatioChange(AWindow w, double oldaspect, double newaspect) {
- logger.debug("ProjectionYX informed of aspect ratio change from " + oldaspect + " to " + newaspect);
-
- Point2D.Double[] corners = w.getUserCorners();
-
- // Get center
- Point2D.Double center = new Point2D.Double(
- 0.5*(corners[0].x+corners[2].x),
- 0.5*(corners[0].y+corners[2].y));
-
- // If > 1, the new view is taller if < 1 it's wider
- double fracchange = newaspect/oldaspect;
-
- if (fracchange > 1) {
- // Need to vzoom "away" to restore aspect ratio
- AZMRInteraction.performVerticalZoom(center, fracchange, w);
- } else {
- // Need to hzoom
- AZMRInteraction.performHorizontalZoom(center, 1.0/fracchange, w);
- }
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/projection/AProjectionYZ.java b/graphics/AtlantisJava/src/atlantis/projection/AProjectionYZ.java
deleted file mode 100755
index 490afb72dfd..00000000000
--- a/graphics/AtlantisJava/src/atlantis/projection/AProjectionYZ.java
+++ /dev/null
@@ -1,72 +0,0 @@
-package atlantis.projection;
-
-
-import atlantis.graphics.ACoord;
-import atlantis.utils.AMath;
-import java.awt.*;
-import java.awt.geom.*;
-import atlantis.data.ADHelix;
-import atlantis.parameters.*;
-
-
-public class AProjectionYZ extends AProjection2D {
-
- public AProjectionYZ() {
- addPopupItem(ASPECT_RATIO_1);
- }
-
- public String getName() {
- return "YZ";
- }
-
- public String getXLabel() {
- return "Z";
- }
-
- public String getYLabel() {
- return "Y"+AMath.PRIME;
- }
-
- public String getXUnits() {
- return "(cm)";
- }
-
- public String getYUnits() {
- return "(cm)";
- }
-
- public Point2D.Double getCenter() {
- return new Point2D.Double(0, 0);
- }
-
- public Point2D.Double[] calculateNoZoomCorners(Dimension wSize) {
- double radius=parameterStore.get("Projection", "TrackingRadius").getD();
- double length=parameterStore.get("Projection", "TrackingLength").getD();
- return aspectRatioLayout(length, radius, wSize);
- }
-
- public static double getPhi() {
- return AProjectionXZ.getPhi();
- }
-
- public static double[][] getRotationMatrix() {
- return AProjectionXZ.getRotationMatrix();
- }
-
- public static int[] getAxisMapping() {
- return new int[] {2, 1, 0};
- }
-
- public ACoord getUserPoint(ADHelix dH, double s) {
- return nonLinearTransform(dH.getYZPoint(s));
- }
-
- public ACoord nonLinearTransform(ACoord user) {
- return nonLinearTransform2D(user, getName());
- }
-
- public ACoord inverseNonLinearTransform(ACoord user) {
- return inverseNonLinearTransform2D(user, getName());
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/projection/AProjectionsManager.java b/graphics/AtlantisJava/src/atlantis/projection/AProjectionsManager.java
deleted file mode 100755
index e9886ac1fef..00000000000
--- a/graphics/AtlantisJava/src/atlantis/projection/AProjectionsManager.java
+++ /dev/null
@@ -1,110 +0,0 @@
-package atlantis.projection;
-
-import java.util.Enumeration;
-import java.util.HashSet;
-import java.util.Hashtable;
-import java.util.Set;
-import java.util.Vector;
-
-import atlantis.output.AExceptionHandler;
-import atlantis.parameters.APar;
-import atlantis.parameters.AParametersGroup;
-
-/**
- * This manager keeps references to all projections.
- *
- * The code keeping track of the list and states of interactions associated with each
- * projection in each window, and creating the corresponding pop-up menus, has been
- * moved to atlantis.gui.AInteractionToolBar and atlantis.interactions.AInteractionsByProjection.
- */
-public class AProjectionsManager {
-
- // the set of projections (name : AProjection)
- private static Hashtable<String,AProjection> projections = new Hashtable<String, AProjection>();
- private static Set<String> projectionsAvailableInDemoMode = new HashSet<String>();
- private static Set<String> defaultProjectionsInDemoMode = new HashSet<String>();
-
- /**
- * Creates projections using information from APar.
- */
- public static void initialise() {
- Vector<String> projVector=APar.instance().getUIGroupNames(AParametersGroup.PROJECTION);
-
- for (String projName : projVector) {
- createProjection(projName);
- }
- }
-
- /**
- * Used to request the projection with the given name
- * @param projectionName The name of the projection
- * @return The AProjection corespoinding to the projection name.
- */
- public static AProjection getProjection(String projectionName) {
- return projections.get(projectionName);
- }
-
- /**
- * Checks whether the given name is a valid projection name.
- * @param name The name to be checked
- * @return True/False
- */
- public static boolean isValidProjection(String name) {
- return projections.containsKey(name);
- }
-
- /**
- * Returns an array containing the names of all known projections
- * @return The name array
- */
- public static String[] getKnownProjectionNames() {
- String[] names=new String[projections.size()];
-
- Enumeration<String> myenum=projections.keys();
-
- for(int i=0; i<projections.size(); i++)
- names[i]=myenum.nextElement();
-
- return names;
- }
-
- /**
- * Check whether the projection should be used in the demo dialog
- * @return false if the projection should not be used or does not exist
- */
- public static boolean useProjectionInDemoMode(String name){
- return projectionsAvailableInDemoMode.contains(name);
- }
-
- /**
- * @return true if the projection should be selected by default in the demo dialog
- */
- public static boolean defaultProjectionInDemoMode(String name){
- return defaultProjectionsInDemoMode.contains(name);
- }
-
- /**
- * Creates an instance of a given projection and pushes it into the
- * <code>projections</code> Hashtable. The name shold be for example: YX if you
- * want to create a instance of AProjectionYX.java class.
- * @param name The name of the projection.
- */
- private static void createProjection(String name) {
- try {
-
- AProjection p=(AProjection)Class.forName("atlantis.projection.AProjection"+name).newInstance();
-
- projections.put(name, p);
- } catch(Exception e) {
- AExceptionHandler.processException("Cannot create AProjection"+name, e);
- }
- }
-
- public static void makeProjectionAvailableInDemoMode(String projection) {
- projectionsAvailableInDemoMode.add(projection);
- }
-
- public static void makeProjectionDefaultInDemoMode(String name) {
- defaultProjectionsInDemoMode.add(name);
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/projection/package.html b/graphics/AtlantisJava/src/atlantis/projection/package.html
deleted file mode 100644
index 471774c48ca..00000000000
--- a/graphics/AtlantisJava/src/atlantis/projection/package.html
+++ /dev/null
@@ -1,9 +0,0 @@
-<html>
-<head></head>
-<body>
-<p>Implementation of projections (XY, Rho Z, V plot, etc). Class
- AProjectionManager changes the current projection and informs the
- AEvent class instance of how to draw itself, e.g. in the XY
- projection.</p>
-</body>
-</html>
diff --git a/graphics/AtlantisJava/src/atlantis/utils/A3Vector.java b/graphics/AtlantisJava/src/atlantis/utils/A3Vector.java
deleted file mode 100755
index 649a18dd317..00000000000
--- a/graphics/AtlantisJava/src/atlantis/utils/A3Vector.java
+++ /dev/null
@@ -1,98 +0,0 @@
-package atlantis.utils;
-
-
-/**
- * Provides basic 3D vector operations.
- */
-
-public class A3Vector {
-
- public double x, y, z;
-
- /**
- * Construct zero 3-vector.
- */
- public A3Vector() {}
-
- /**
- * Construct 3-vector from Cartesian coordinates.
- * @param dx
- * @param dy
- * @param dz
- */
- public A3Vector(double x, double y, double z) {
- this.x=x;
- this.y=y;
- this.z=z;
- }
-
- /**
- * Create 3-vector from eta, phi and magnitude.
- * @param eta pseudorapidity along z direction
- * @param phi azimuthal angle [radians]
- * @param r magnitude of vector
- * @return new A3Vector
- */
- public static A3Vector fromEtaPhiR(double eta, double phi, double r) {
- double theta = 2.0 * Math.atan(Math.exp(-eta));
- return new A3Vector(r * Math.sin(theta) * Math.cos(phi),
- r * Math.sin(theta) * Math.sin(phi),
- r * Math.cos(theta));
- }
-
- /**
- * Create 3-vector from cylindrical coordinates rho, phi, z.
- * @param rho component perpendicular to z axis
- * @param phi azimuthal angle [radians]
- * @param z
- * @return
- */
- public static A3Vector fromRhoPhiZ(double rho, double phi, double z) {
- double x=rho*Math.cos(phi);
- double y=rho*Math.sin(phi);
- return new A3Vector(x,y,z);
- }
-
- public A3Vector getNormalized() {
- double r=Math.sqrt(x*x+y*y+z*z);
- return new A3Vector(x/r, y/r, z/r);
- }
-
- public A3Vector normalize() {
- double r=magnitude();
- x/=r;
- y/=r;
- z/=r;
- return this;
- }
-
- public double magnitude() {
- return Math.sqrt(x*x+y*y+z*z);
- }
-
- public A3Vector scale(double a) {
- x*=a;
- y*=a;
- z*=a;
- return this;
- }
-
- public A3Vector add(A3Vector v) {
- x+=v.x;
- y+=v.y;
- z+=v.z;
- return this;
- }
-
- public A3Vector subtract(A3Vector v) {
- x-=v.x;
- y-=v.y;
- z-=v.z;
- return this;
- }
-
- public String toString() {
- return "A3Vector[x="+x+", y="+y+", z="+z+"]";
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/utils/A4Vector.java b/graphics/AtlantisJava/src/atlantis/utils/A4Vector.java
deleted file mode 100755
index 5032250f170..00000000000
--- a/graphics/AtlantisJava/src/atlantis/utils/A4Vector.java
+++ /dev/null
@@ -1,127 +0,0 @@
-package atlantis.utils;
-
-/**
- * Provides basic 4D vector operations.
- */
-public class A4Vector
-{
- public double px, py, pz, e;
-
- public A4Vector()
- {}
-
- public A4Vector(double dx, double dy, double dz, double m)
- {
- set(dx, dy, dz, m);
- }
-
- public A4Vector(A3Vector v, double m)
- {
- set(v.x, v.y, v.z, m);
- }
-
- public void set(double dx, double dy, double dz, double m)
- {
- px = dx;
- py = dy;
- pz = dz;
- e = Math.sqrt(px * px + py * py + pz * pz + m * m);
- }
-
- public void setPtEtaPhiM(double pT, double eta, double phi, double mass)
- {
- double ptAbs = Math.abs(pT);
- px = ptAbs*Math.cos(phi);
- py = ptAbs*Math.sin(phi);
- pz = ptAbs*Math.sinh(eta);
- e = Math.sqrt(px * px + py * py + pz * pz + mass * mass);
- }
-
- public double getP()
- {
- return Math.sqrt(px * px + py * py + pz * pz);
- }
-
- public double getPt()
- {
- return Math.sqrt(px * px + py * py);
- }
-
- public double getE()
- {
- return e;
- }
-
- /**
- * getEt() returns the transverse energy.
- * The formula used to calculate it is:
- * Et^2 = E^2 * Pt^2 / P^2.
- */
- public double getEt()
- {
- double pt2 = px * px + py * py;
- double p2 = pt2 + pz * pz;
- return Math.sqrt(e * e * pt2/p2);
- }
-
- public double getMass()
- {
- return Math.sqrt(e * e - px * px - py * py - pz * pz);
- }
-
- /**
- * getMt() returns the transverse mass.
- * The formula used to calculate it is:
- * Mt^2 = Et^2 - Pt^2.
- *
- * This is from the Particle Data Group (http://pdg.lbl.gov/)
- *
- * Note this is different to another definition in the PDG:
- * Mt^2 = E^2 - Pz^2 = m^2 + Pt^2
- *
- * [J. Beringer et al. (Particle Data Group), Phys. Rev. D86, 010001 (2012).
- * (Kinematics, 43.6.1 and 43.5.2)]
- */
- public double getMt()
- {
- double pt2 = px * px + py * py;
- double Et = getEt();
- return Math.sqrt(Et * Et - pt2);
- }
-
- public double getPhi()
- {
- return px == 0.0 && py == 0.0 ? 0.0 : Math.atan2(py,px);
- }
-
- public double getEta()
- {
- double ptot = getP();
- double cosTheta = ptot == 0.0 ? 1.0 : pz/ptot;
- if (cosTheta*cosTheta < 1) return -0.5* Math.log( (1.0-cosTheta)/(1.0+cosTheta) );
- if (pz > 0) return 10e10;
- else return -10e10;
- }
-
- public void add(double dx, double dy, double dz, double m)
- {
- px += dx;
- py += dy;
- pz += dz;
- e += Math.sqrt(dx * dx + dy * dy + dz * dz + m * m);
- }
-
- public void add(A4Vector v)
- {
- px += v.px;
- py += v.py;
- pz += v.pz;
- e += v.e;
- }
-
- public String toString()
- {
- return "A4Vector[px=" + px + ", py=" + py + ", pz=" + pz + ", E=" + e + ", m=" + getMass() + "]";
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/utils/AAtlantisException.java b/graphics/AtlantisJava/src/atlantis/utils/AAtlantisException.java
deleted file mode 100755
index d8a4edc6d38..00000000000
--- a/graphics/AtlantisJava/src/atlantis/utils/AAtlantisException.java
+++ /dev/null
@@ -1,41 +0,0 @@
-package atlantis.utils;
-
-/**
- *
- * @author Zdenek Maxa
- */
-public class AAtlantisException extends Exception
-{
- private boolean isFatal = true;
-
- // private static ALogger logger = ALogger.getLogger(AAtlantisException.class);
-
-
- public AAtlantisException(String msg)
- {
- super(msg);
- // logger.debug(msg, this);
- this.isFatal = true;
-
- } // AAtlantisException() -----------------------------------------------
-
-
-
- public AAtlantisException(String msg, boolean isFatal)
- {
- super(msg);
- // logger.debug(msg, this);
- this.isFatal = isFatal;
-
- } // AAtlantisException() -----------------------------------------------
-
-
-
- public boolean isFatal()
- {
- return this.isFatal;
-
- } // isFatal() ----------------------------------------------------------
-
-
-} // class AAtlantisException ===============================================
diff --git a/graphics/AtlantisJava/src/atlantis/utils/AClipPolygon.java b/graphics/AtlantisJava/src/atlantis/utils/AClipPolygon.java
deleted file mode 100755
index ad73aac1bfd..00000000000
--- a/graphics/AtlantisJava/src/atlantis/utils/AClipPolygon.java
+++ /dev/null
@@ -1,98 +0,0 @@
-package atlantis.utils;
-
-/**
- * This class is used when clipping polygons.
- */
-public class AClipPolygon extends APolygon {
-
- public AClipPolygon(double[] x, double[] y) {
- super(x, y);
- calc_hesse();
- }
-
- private double[][] normalized;
- private double[] distances;
-
- public double[] get_normalized(int index) {
- if(index>=0&&index<normalized.length&&normalized[index].length==3)
- return normalized[index];
- else
- return null;
- }
-
- public double get_distance(int index) {
- if(index>=0&&index<distances.length)
- return distances[index];
- else
- return Double.NaN;
- }
-
- public void calc_hesse() {
- int degree=nodes.size();
-
- // Check if fields are already allocated
- if(distances==null||distances.length!=degree)
- distances=new double[nodes.size()]; // Generate array for distances
-
- if(normalized==null||normalized.length!=degree)
- normalized=new double[nodes.size()][]; // array for normal vectors
-
- // Loop over all components and determine the normal vectors
- for(int i=0; i<degree; i++) {
- APoint r, next=null, current=null;
-
- if(nodes.elementAt(i) instanceof APoint)
- current=(APoint)nodes.elementAt(i);
- if(nodes.elementAt((i+1)%degree) instanceof APoint)
- next=(APoint)nodes.elementAt((i+1)%degree);
-
- // If both APoints exist, calculate the normalized vector
- if(next!=null&¤t!=null) {
-
- normalized[i]=new double[3];
- r=next.minus(current);
-
- // Check values and determine normalized vector.
- if(r.x==0)
- if(r.y>0) {
- normalized[i][0]=1.0;
- normalized[i][1]=0.0;
- normalized[i][2]=1.0;
- } else if(r.y<0) { // on the negative y-Axis
- normalized[i][0]=-1.0;
- normalized[i][1]=0.0;
- normalized[i][2]=1.0;
- }
-
- if(r.y==0)
- if(r.x>0) { // on the positive x-Axis
- normalized[i][0]=0.0;
- normalized[i][1]=-1.0;
- normalized[i][2]=1.0;
- } else if(r.x<0) { // on the negative x-Axis
- normalized[i][0]=0.0;
- normalized[i][1]=1.0;
- normalized[i][2]=1.0;
- }
-
- if(r.y!=0)
- if(r.x>0) { // right of the y-Axis
- double x_val=r.y/r.x;
- double length=Math.sqrt(x_val*x_val+1);
-
- normalized[i][0]=x_val/length;
- normalized[i][1]=-1.0/length;
- normalized[i][2]=1.0;
- } else if(r.x<0) { // left of the y-Axis
- double x_val=-r.y/r.x;
- double length=Math.sqrt(x_val*x_val+1);
-
- normalized[i][0]=x_val/length;
- normalized[i][1]=1.0/length;
- normalized[i][2]=1.0;
- }
- distances[i]=-current.dot_product(normalized[i]);
- }
- }
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/utils/ACommandHistory.java b/graphics/AtlantisJava/src/atlantis/utils/ACommandHistory.java
deleted file mode 100755
index b226d78b0fa..00000000000
--- a/graphics/AtlantisJava/src/atlantis/utils/ACommandHistory.java
+++ /dev/null
@@ -1,213 +0,0 @@
-package atlantis.utils;
-
-import java.util.Vector;
-import javax.swing.text.JTextComponent;
-
-
-/**
- * Implementation of simple command history (up and down
- * arrows) and tab completion based upon the already typed commands.
- * No cross-sessions commands history so far.
- *
- * @author Zdenek Maxa
- */
-public class ACommandHistory extends Vector
-{
- // the component upon which the history operates
- private JTextComponent comp = null;
- // item on the size() position of the history (content of the text field)
- private String tempItem = "";
- private int pointer = 0;
- private int tabPointer = 0; // help pointer when doing tab completion
- private String tabItem = null;
-
-
- // ----------------------------------------------------------------------
- public ACommandHistory(JTextComponent compoment)
- {
- super();
- this.comp = compoment;
- this.pointer = 0;
- this.tabPointer = 0;
- this.tempItem = "";
- this.nullTabItem();
-
- } // ACommandHistory() --------------------------------------------------
-
-
- /**
- * add the item into the history container, if it's already there it's
- * removed first and then added (placed to the end)
- * @param item String
- */
- public void add(String item)
- {
- if(super.contains(item))
- {
- super.remove(item);
- }
- super.add(item);
- pointer = super.size();
- nullTabItem();
-
- } // add() --------------------------------------------------------------
-
-
- /**
- * erase the content of the tabItem string upon which the tab-completion
- * searching is performed
- */
- public void nullTabItem()
- {
- this.tabItem = null;
-
- } // nullTabItem() ------------------------------------------------------
-
-
- private String getItem()
- {
- if(pointer < super.size())
- {
- return super.get(pointer).toString();
- }
- else
- {
- return tempItem;
- }
-
- } // getItem() ----------------------------------------------------------
-
-
-
- private void desc()
- {
- if(pointer > 0)
- {
- pointer--;
- }
-
- } // desc() -------------------------------------------------------------
-
-
-
- private void inc()
- {
- if(pointer < super.size())
- {
- pointer++;
- }
-
- } // inc() --------------------------------------------------------------
-
-
-
- /**
- * compares the actual content of the text field with the history item
- * on the matching position. if they differ (user changed the item in the
- * text field) the item in the history (or the tempItem attribute - the
- * last item, not yet added to the container) gets updated
- */
- private void compareAndUpdate()
- {
- String currItem = comp.getText();
- if(pointer < super.size())
- {
- String histItem = super.get(pointer).toString();
- if(! histItem.equals(currItem))
- {
- super.remove(pointer);
- super.add(pointer, currItem);
- }
- }
- else
- {
- if(! tempItem.equals(currItem))
- {
- tempItem = currItem;
- }
- }
-
- } // compareAndUpdate() -------------------------------------------------
-
-
-
- /**
- * up-arrow handler - it will decrease the pointer and return former
- * command
- */
- public void upArrow()
- {
- if(! super.isEmpty())
- {
- compareAndUpdate();
- desc();
- comp.setText(getItem());
- }
- nullTabItem();
-
- } // upArrow() ----------------------------------------------------------
-
-
-
- /**
- * down-arrow handler - it will increase the pointer toward the more
- * recent commands
- */
- public void downArrow()
- {
- if(! super.isEmpty())
- {
- compareAndUpdate();
- inc();
- comp.setText(getItem());
- }
- nullTabItem();
-
- } // downArrow() --------------------------------------------------------
-
-
-
- /**
- * tabulator handler, tab-completion
- */
- public void tabulator()
- {
- // check tabItem - first or subsequent tab-key hit?
- if(tabItem == null)
- {
- tabItem = comp.getText().trim();
- if("".equals(tabItem) || tabItem == null)
- {
- nullTabItem();
- return;
- }
- }
-
- if(! super.isEmpty())
- {
- compareAndUpdate();
-
- if(tabPointer >= super.size())
- {
- tabPointer = 0; // rotate again from the beginning
- }
-
- for( ; tabPointer < super.size(); tabPointer++)
- {
- String item = super.get(tabPointer).toString();
- if(item.startsWith(tabItem))
- {
- pointer = tabPointer;
- comp.setText(item);
- tabPointer++; // for next iteration (next tab hit)
- break;
- }
- }
-
- } // if(! super.isEmpty()) [container empty]
-
- } // tabulator() --------------------------------------------------------
-
-
-
-} // class ACommandHistory ==================================================
diff --git a/graphics/AtlantisJava/src/atlantis/utils/AHashMap.java b/graphics/AtlantisJava/src/atlantis/utils/AHashMap.java
deleted file mode 100755
index 6e4f5f1c9d4..00000000000
--- a/graphics/AtlantisJava/src/atlantis/utils/AHashMap.java
+++ /dev/null
@@ -1,201 +0,0 @@
-package atlantis.utils;
-
-import java.util.HashMap;
-import atlantis.Atlantis;
-
-/**
- * Based on a standard Hashmap with an modified interface
- */
-
-public class AHashMap extends HashMap
-{
-
- private static ALogger logger = ALogger.getLogger(AHashMap.class);
-
- private void printWarningMessage(String msg)
- {
- logger.warn("AHashMap: " + msg);
- }
-
-
- public AHashMap(int num)
- {
- super(num);
- }
-
- public AHashMap put(String name, int i)
- {
- put(name, new Integer(i));
- return this;
- }
-
- public float[] getFloatArray(String name)
- {
- Object temp = get(name);
- if(temp == null)
- {
- printWarningMessage("getFloatArray(): can't find float array named " +
- name);
- return null;
- }
- else
- {
- return (float[]) temp;
- }
- } // getFloatArray() -------------------------------------------------------
-
- public float[][][] getFloatArray3D(String name)
- {
- Object temp = get(name);
-
- if(temp == null)
- {
- printWarningMessage("getFloatArray3D(): can't find 3D float array named "
- + name);
- }
- return (float[][][]) temp;
- }
-
- public String[] getStringArray(String name)
- {
- Object temp = get(name);
-
- if(temp == null)
- {
- printWarningMessage("getStringArray(): can't find String array named "
- + name);
- }
- return (String[]) temp;
- }
-
- public String[][] getStringArray2D(String name)
- {
- Object temp = get(name);
-
- if(temp == null)
- {
- printWarningMessage("getStringArray2D(): can't find String array named "
- + name);
- }
- return (String[][]) temp;
- }
-
-
- public int[] getIntArray(String name)
- {
- Object temp = get(name);
-
- if(temp == null && !name.equals("sub"))
- {
- printWarningMessage("getIntArray(): can't find int array named " +
- name);
- }
- return (int[]) temp;
- }
-
-
- public int[][] getIntArray2D(String name)
- {
- Object temp = get(name);
-
- if(temp == null)
- {
- printWarningMessage("getIntArray2D(): can't find 2D int array named " +
- name);
- }
- return (int[][]) temp;
- }
-
-
- public int getInt(String name)
- {
- Object temp = get(name);
-
- if(temp == null)
- {
- printWarningMessage("getInt(): can't find int named " + name);
- }
- return ((Integer) temp).intValue();
- }
-
- public long getLong(String name)
- {
- Object temp = get(name);
-
- if(temp == null)
- {
- printWarningMessage("getLong(): can't find int named " + name);
- return -1;
- }
- return ((Long) temp).longValue();
- }
-
- public float getFloat(String name)
- {
- Object temp = get(name);
-
- if(temp == null)
- {
- printWarningMessage("getFloat(): can't find int named " + name);
- return -1;
- }
- return ((Float) temp).floatValue();
- }
-
-
- public float[] getUnknownFloatArray(String name)
- {
- Object temp = get(name);
-
- if(temp == null)
- return new float[getInt("numData")];
- return (float[]) temp;
- }
-
- public long[] getUnknownLongArray(String name)
- {
- Object temp = get(name);
-
- if(temp == null)
- return new long[getInt("numData")];
- return (long[]) temp;
- }
-
-
- public int[] getUnknownIntArray(String name)
- {
- Object temp = get(name);
-
- if(temp == null)
- return new int[getInt("numData")];
- return (int[]) temp;
- }
-
-
- public float[] getUnsureFloatArray(String name)
- {
- Object temp = get(name);
-
- if(temp == null)
- return null;
- return (float[]) temp;
- }
-
- public int[] getUnsureIntArray(String name)
- {
- Object temp = get(name);
-
- if(temp == null)
- return null;
- return (int[]) temp;
- }
-
- public String[] getUnsureStringArray(String name)
- {
- Object temp = get(name);
-
- if(temp == null)
- return null;
- return (String[]) temp;
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/utils/AIdDictionary.java b/graphics/AtlantisJava/src/atlantis/utils/AIdDictionary.java
deleted file mode 100644
index 9d04ec7239c..00000000000
--- a/graphics/AtlantisJava/src/atlantis/utils/AIdDictionary.java
+++ /dev/null
@@ -1,152 +0,0 @@
-package atlantis.utils;
-
-import java.util.ArrayList;
-import java.util.HashMap;
-import java.util.List;
-import org.w3c.dom.Node;
-import org.w3c.dom.NodeList;
-
-/**
- * Class representing an identifier dictionary, used for decoding of compact IDs.
- *
- * @author Eric Jansen
- */
-class AIdDictionary extends AIdField {
-
- private HashMap<String, Node> subregions = null;
- private HashMap<String, Node> labels = null;
- private HashMap<String, List<AIdRange>> ranges = new HashMap<String, List<AIdRange>>();
-
- /**
- * Empty constructor, used to create a placeholder dictionary that
- * can be initialized later.
- */
- AIdDictionary() {}
-
- /**
- * Construct and initialize dictionary from an <IdDictionary> XML node.
- * @param dict dictionary XML node
- * @throws AAtlantisException
- */
- AIdDictionary(Node dict) throws AAtlantisException {
- initialize(dict);
- }
-
- /**
- * Initializes a dictionary from an <IdDictionary> XML node.
- * @param dict dictionary XML node
- * @throws AAtlantisException
- */
- final void initialize(Node dict) throws AAtlantisException {
-
- this.dictionary = this;
-
- NodeList nodes = dict.getChildNodes();
-
- for (int i=0; i<nodes.getLength(); i++) {
- Node node = nodes.item(i);
-
- if (node.getNodeType() == Node.ELEMENT_NODE) {
-
- if ("field".equals(node.getNodeName())) {
- String fieldName = node.getAttributes().getNamedItem("name").getNodeValue();
- if (labels == null) {
- labels = new HashMap<String, Node>();
- }
- labels.put(fieldName, node);
-
- } else if ("subregion".equals(node.getNodeName())) {
- String subregionName = node.getAttributes().getNamedItem("name").getNodeValue();
- if (subregions == null) {
- subregions = new HashMap<String, Node>();
- }
- subregions.put(subregionName, node);
-
- } else if ("region".equals(node.getNodeName())) {
- parseRegion(node, null, 0);
-
- } else if ("alternate_regions".equals(node.getNodeName())) {
- NodeList altnodes = node.getChildNodes();
-
- for (int j=0; j<altnodes.getLength(); j++) {
- Node altnode = altnodes.item(j);
- if (altnode.getNodeType() == Node.ELEMENT_NODE
- && "region".equals(altnode.getNodeName())) {
- parseRegion(altnode, null, 0);
- }
- }
- }
- }
- }
-
- // Clean up the HashMaps, they are only needed during initialization.
- ranges = null;
- labels = null;
- subregions = null;
- }
-
- /**
- * Returns true if the dictionary contains labels for the named field.
- * @param fieldName name of the field
- * @return true if labels are present
- */
- boolean hasLabels(String fieldName) {
- return labels.containsKey(fieldName);
- }
-
- /**
- * Returns the <field> node containing the labels for the named field.
- * @param fieldName name of the field
- * @return <field> XML node
- * @throws AAtlantisException
- */
- Node getLabels(String fieldName) throws AAtlantisException {
- if (labels.containsKey(fieldName)) {
- return labels.get(fieldName);
- } else {
- throw new AAtlantisException("Labels for field '"+fieldName+"' not found");
- }
- }
-
- /**
- * Returns the <subregion> node containing the named subregion.
- * @param subRegionName name of the subregion
- * @return <subregion> XML node
- * @throws AAtlantisException
- */
- Node getSubRegion(String subRegionName) throws AAtlantisException {
- if (subregions.containsKey(subRegionName)) {
- return subregions.get(subRegionName);
- } else {
- throw new AAtlantisException("Subregion '"+subRegionName+"' not found");
- }
- }
-
- /**
- * One AIdRange object for every unique field range is kept inside the dictionary.
- * It serves to collect all possible values for the named field. Due to the tree
- * structure of the identifiers multiple AIdFields with the same name might be
- * created, but they will always have the same range. The first AIdField with a
- * certain name will be the parent of the range, but it is only used for decoding
- * of labelled fields. The field name has to be set before creating the range in the
- * dictionary.
- * @param field named identifier field
- * @return global range corresponding to the named field
- */
- AIdRange getRange(String group, int level) throws AAtlantisException {
-
- List<AIdRange> range;
- if (ranges.containsKey(group)) {
- range = ranges.get(group);
- } else {
- range = new ArrayList<AIdRange>();
- ranges.put(group, range);
- }
-
- while (range.size() <= level) {
- range.add(new AIdRange());
- }
-
- return range.get(level);
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/utils/AIdField.java b/graphics/AtlantisJava/src/atlantis/utils/AIdField.java
deleted file mode 100644
index a1f9c7d8d8d..00000000000
--- a/graphics/AtlantisJava/src/atlantis/utils/AIdField.java
+++ /dev/null
@@ -1,537 +0,0 @@
-package atlantis.utils;
-
-import java.util.HashMap;
-import org.w3c.dom.Node;
-import org.w3c.dom.NodeList;
-
-/**
- * Class representing a single field in an identifier. Each field has a parent,
- * a range of allowed values and child fields that may depend on the value of the
- * current field. The possible values of a field will determine the number of bits
- * needed to store it in the compact identifier. The AIdField tree is capable of
- * encoding and decoding these compact identifiers.
- *
- * @author Eric Jsnsen
- */
-class AIdField {
-
- /**
- * Dictionary that this field belongs to. The dictionary is used to keep track
- * of the possible values of a field,
- */
- protected AIdDictionary dictionary = null;
-
- /** Parent field in the identifier tree. */
- private AIdField parent = null;
-
- /** Level of nesting this field is at. */
- private int level = 0;
-
- /** Field name. */
- private String name = null;
-
- /** All known values found for this field in the dictionary. */
- private AIdRange fieldRange = null;
-
- /** Map of value ranges to child AIdField objects, inverse of parent. */
- private HashMap<AIdRange, AIdField> children = new HashMap<AIdRange, AIdField>();
-
- /** Map of string labels in case of an enumerated field. */
- private HashMap<Integer, String> labels = null;
-
- /** Reference to idHelper for retrieving dictionaries. */
- protected static ANewIdHelper idHelper = ANewIdHelper.instance();
-
- /**
- * Empty constructor.
- */
- protected AIdField() {}
-
- /**
- * Constructor, setting dictionary and parent field.
- * @param dict dictionary the field belongs to
- * @param parentField parent field
- */
- protected AIdField(AIdDictionary dict, AIdField parentField) {
-
- dictionary = dict;
- if (parentField != null) {
- parent = parentField;
- level = parent.getLevel()+1;
- }
- }
-
- /**
- * Get the name of the field.
- * @return field name
- */
- String getName() {
- return name;
- }
-
- /**
- * Get the nesting level of the field.
- * @return nesting level
- */
- int getLevel() {
- return level;
- }
-
- /**
- * Obtain the value of the named field from a compact identifier.
- * @param fieldName field name
- * @param id compact identifier
- * @return value of the given field in the identifier
- * @throws AAtlantisException
- */
- public int get(String fieldName, long id) throws AAtlantisException {
- if (id > Integer.MAX_VALUE) {
- return get(fieldName, id, 64);
- } else {
- return get(fieldName, id, 32);
- }
- }
-
- /**
- * Obtain the string value of the named field from a compact identifier.
- * @param fieldName field name
- * @param id compact identifier
- * @return value of the given field in the identifier
- * @throws AAtlantisException
- */
- public String getString(String fieldName, long id) throws AAtlantisException {
- if (id > Integer.MAX_VALUE) {
- return getString(fieldName, id, 64);
- } else {
- return getString(fieldName, id, 32);
- }
- }
-
- /**
- * Internal version of get(String, long), propagating the bit offset in
- * the compact identifier.
- * @param fieldName field name
- * @param id compact identifier
- * @param offset bit offset accumulated from parent fields
- * @return value of the given field in the identifier
- * @throws AAtlantisException
- */
- private int get(String fieldName, long id, int offset) throws AAtlantisException {
-
- if (fieldRange == null) {
- throw new AAtlantisException("No range known for identifier field"
- + " '" + name + "' while decoding '" + fieldName + "'");
- }
-
- // The following code is duplicated a few times in this class. This is
- // necessary to extract the value but also update offset at the same time.
- int bits = fieldRange.bits();
- offset -= bits;
- int mask = (int)(Math.pow(2, bits)) - 1;
-
- int value;
- try {
- value = fieldRange.get((int)(id >> offset & mask));
- } catch (AAtlantisException e) {
- throw new AAtlantisException("Unable to decode identifier field"
- + " '" + name + "': " + e);
- }
-
- if (fieldName.equals(name)) {
- // This is me, return value
- return value;
- } else {
- // Find the correct child to delegate this ID to
- for(AIdRange range : children.keySet()) {
- if (range.contains(value)) {
- return children.get(range).get(fieldName, id, offset);
- }
- }
- }
-
- throw new AAtlantisException("Invalid identifier '" + id + "'");
- }
-
- /**
- * Internal version of get(String, long), propagating the bit offset in
- * the compact identifier.
- * @param fieldName field name
- * @param id compact identifier
- * @param offset bit offset accumulated from parent fields
- * @return value of the given field in the identifier
- * @throws AAtlantisException
- */
- private String getString(String fieldName, long id, int offset) throws AAtlantisException {
-
- if (fieldRange == null) {
- throw new AAtlantisException("No range known for identifier field"
- + " '" + name + "' while decoding '" + fieldName + "'");
- }
-
- // The following code is duplicated a few times in this class. This is
- // necessary to extract the value but also update offset at the same time.
- int bits = fieldRange.bits();
- offset -= bits;
- int mask = (int)(Math.pow(2, bits)) - 1;
-
- int value;
- try {
- value = fieldRange.get((int)(id >> offset & mask));
- } catch (AAtlantisException e) {
- throw new AAtlantisException("Unable to decode identifier field"
- + " '" + name + "': " + e);
- }
-
- if (fieldName.equals(name)) {
- // This is me, return value
- return getLabel(value);
- } else {
- // Find the correct child to delegate this ID to
- for(AIdRange range : children.keySet()) {
- if (range.contains(value)) {
- return children.get(range).getString(fieldName, id, offset);
- }
- }
- }
-
- throw new AAtlantisException("Invalid identifier '" + id + "'");
- }
-
- /**
- * Convert a compact identifier into a "/" delimited expanded identifier.
- * @param id compact identifier
- * @return expanded identifier, fields delimited by "/"
- */
- public String getFullIdentifier(long id) throws AAtlantisException {
-
- StringBuilder s = new StringBuilder();
- if (id > Integer.MAX_VALUE) {
- getFullIdentifier(id, 64, s);
- } else {
- getFullIdentifier(id, 32, s);
- }
- return s.toString();
- }
-
- /**
- * Internal version of getFullIdentifier(long), passing the bit offset a
- * StringBuilder object. The output is appended to the StringBuilder object.
- * @param id compact identifier
- */
- private void getFullIdentifier(long id, int offset, StringBuilder s) throws AAtlantisException {
-
- // The following code is duplicated a few times in this class. This is
- // necessary to extract the value but also update offset at the same time.
- int bits = fieldRange.bits();
- offset -= bits;
- int mask = (int)(Math.pow(2, bits)) - 1;
-
- int value;
- try {
- value = fieldRange.get((int)(id >> offset & mask));
- } catch (AAtlantisException e) {
- throw new AAtlantisException("Unable to decode identifier field"
- + " '" + name + "': " + e.getMessage());
- }
-
- if (hasLabels()) {
- s.append(getLabel(value));//.append("=").append(value);
- } else {
- s.append(value);
- }
-
- if (children != null) {
- for (AIdRange range : children.keySet()) {
- if (range.contains(value)) {
- AIdField child = children.get(range);
- if (child != null && !child.isEmpty()) {
- s.append("/");
- child.getFullIdentifier(id, offset, s);
- }
- return;
- }
- }
-
- throw new AAtlantisException("Invalid identifier '" + id + "', "
- + "field '" + name +"' does not allow value " + value + " "
- + "(partially decoded: '" + s.toString() + "')");
- }
- }
-
- /**
- * Parses a <region> element in the XML file. This method should be
- * called on an AIdField instance that represents the first field in the
- * region. Children will be added by recursively calling this method.
- * @param region XML element to parse
- * @param start Starting child element
- * @return Last child parsed
- * @throws AAtlantisException
- */
- AIdField parseRegion(Node region, String group, int start) throws AAtlantisException {
- NodeList nodes = region.getChildNodes();
-
- if (start == 0) {
- // In a new region, first set the group all parsed elements belong to (if any).
- Node groupNode = region.getAttributes().getNamedItem("group");
- if (groupNode != null) {
- group = groupNode.getNodeValue();
- }
- }
-
- for (int i=start; i<nodes.getLength(); i++) {
- Node node = nodes.item(i);
-
- /* Select only elements, not the text in between. */
- if (node.getNodeType() == Node.ELEMENT_NODE) {
-
- if ("range".equals(node.getNodeName())) {
-
- // The first <range> encountered is for the current AIdFied. For the
- // given values of this field, the next will be a child. For example,
- // when called with:
- //
- // <range field="subdet" value="2" />
- // <range field="part" value=1" />
- // ...
- //
- // This field will become "subdet". In case the value of this field
- // in the identifier is "2", the next field in the chain is "part".
- // More values of "part" will probably be added later, plus other
- // values of "subdet" for which the next field is not "part" but
- // something different.
- if (name == null) {
- name = node.getAttributes().getNamedItem("field").getNodeValue();
- if (dictionary.hasLabels(name)) {
- parseLabels(dictionary.getLabels(name));
- }
-
- fieldRange = dictionary.getRange(group, level);
- }
-
- AIdRange range = new AIdRange(this, group, node);
-
- // Fields are sometimes repeated without specifying any allowed values,
- // in that case we allow all existing values (so we copy fieldRange).
- if (range.isEmpty() && !fieldRange.isEmpty()) {
- range.add(fieldRange);
- }
-
- // If this particular range is already present, give the next
- // node (i+1) to the correct child and tell it to parse it.
- if (children.containsKey(range) && children.get(range) != null) {
-
- return children.get(range).parseRegion(region, group, i+1);
- }
-
- // If there is another range that fully contains this range, we add the
- // current node there. This is a reasonable shortcut, since we are not
- // interested in fully validating IDs (i.e. raise an exception when an
- // RPC identifier is presented for a muon station that should not contain
- // RPCs), this is a reasonable shortcut.
- for (AIdRange childRange : children.keySet()) {
- if (childRange.contains(range)) {
- return children.get(childRange).parseRegion(region, group, i+1);
- }
- }
-
- if (group != null && !group.equals("")) {
-
- // Two ranges within the same group means that they should be
- // considered to lead to the same child. In that case expand
- // the range using AIdRange.add().
- for (AIdRange childRange : children.keySet()) {
- if (group.equals(childRange.group())) {
- AIdField child = children.get(childRange);
-
- if (child != null) {
- fieldRange.add(range);
- children.remove(childRange);
- childRange.add(range);
- children.put(childRange, child);
- return child.parseRegion(region, group, i+1);
- }
- }
- }
- }
-
- fieldRange.add(range);
-
- AIdField child = new AIdField(dictionary, this);
- AIdField retfield = child.parseRegion(region, group, i+1);
- if (retfield instanceof AIdDictionary) {
- children.put(range, retfield);
- } else {
- children.put(range, child);
- }
-
- return retfield;
-
- } else if ("dictionary".equals(node.getNodeName())) {
-
- // A dictionary is a reference to another file. The AIdDictionary class
- // inherits from AIdField and can will act as the first field in the
- // dictionary. Dictionaries are initialized one by one, so when a dictionary
- // does not exist yet, it is created empty so that it can be initialized later.
- String dictName = node.getAttributes().getNamedItem("name").getNodeValue();
- if (idHelper.hasDictionary(dictName)) {
- return idHelper.getDictionary(dictName);
- } else {
- AIdDictionary dict = new AIdDictionary();
- idHelper.addDictionary(dictName, dict);
- return dict;
- }
-
- } else if ("reference".equals(node.getNodeName())) {
-
- // A reference is a link to a <subregion> element. The elements within the
- // subregion are parsed as if they were present instead of the reference.
- String reference = node.getAttributes().getNamedItem("subregion").getNodeValue();
- AIdField child = parseRegion(dictionary.getSubRegion(reference), group, 0);
-
- // After parsing the subregion, we need to continue with the current region.
- AIdField retfield = child.parseRegion(region, group, i+1);
- return retfield;
- }
- }
- }
-
- // Reached the end of a region or subregion,
- // return the last object parsed (which is us).
- return this;
- }
-
- /**
- * Parse a <field> object in the XML file.
- * @param field XML element to parse
- * @throws AAtlantisException
- */
- private void parseLabels(Node field) throws AAtlantisException {
-
- labels = new HashMap<Integer, String>();
- int lastValue = 0;
-
- NodeList nodes = field.getChildNodes();
- for (int i=0; i<nodes.getLength(); i++) {
- Node node = nodes.item(i);
- if (node.getNodeType() == Node.ELEMENT_NODE) {
-
- if (node.getNodeName().equals("label")) {
- String label = node.getAttributes().getNamedItem("name").getNodeValue();
- Integer value;
-
- Node valueNode = node.getAttributes().getNamedItem("value");
- if (valueNode == null) {
- value = lastValue+1;
- } else {
- value = Integer.parseInt(valueNode.getNodeValue().replaceAll("\\+", ""));
- }
-
- labels.put(value, label);
- lastValue = value.intValue();
- }
- }
- }
- }
-
- /**
- * Check if this field has string labels.
- * @return true if string labels are present
- */
- boolean hasLabels() {
- return labels != null && labels.size() > 0;
- }
-
- /**
- * Check if this field is empty/uninitialized. Fields at the end of the tree
- * will remain in this state, during construction all newly initialized fields
- * will be in this state.
- * @return
- */
- boolean isEmpty() {
- return name == null;
- }
-
- /**
- * Return label corresponding to an integer value.
- * @param value field value
- * @return label
- */
- String getLabel(Integer value) {
- if (labels.containsKey(value)) {
- return labels.get(value);
- } else {
- return "?";
- }
- }
-
- /**
- * Convert a field value as it appears in the XML file into a true integer.
- * For example "+2" is converted into 2 and labelled fields are converted
- * into their integer equivalents.
- * @param fieldName field name (for label lookup)
- * @param value "raw" field value in the XML
- * @return integer value
- * @throws AAtlantisException
- */
- protected int valueToInt(String fieldName, String value) throws AAtlantisException {
-
- try {
- return Integer.parseInt(value.replaceAll("\\+", ""));
- } catch (NumberFormatException e) {
- return labelToInt(fieldName, value);
- }
- }
-
- /**
- * Convert a field label into an integer value.
- * @param fieldName field name
- * @param label value of the labelled field
- * @return integer label
- * @throws AAtlantisException
- */
- protected int labelToInt(String fieldName, String label) throws AAtlantisException {
- if (labels != null) {
- if (labels.containsValue(label)) {
- for (Integer value : labels.keySet()) {
- if (label.equals(labels.get(value))) {
- return value;
- }
- }
- }
- }
-
- throw new AAtlantisException("Field/label not found in"
- +" dictionary: " + fieldName + "/" + label);
- }
-
- /**
- * Convert the field structure into a printable form, starting from this node.
- * @return string representation of the identifier tree
- */
- @Override
- public String toString() {
- return toString("");
- }
-
- /**
- * Private version of toString(), used recursively and passing an indentation
- * string to print the entire tree structure.
- * @param indent identation string, appended to all lines
- * @return string representation of the identifier tree
- */
- private String toString(String indent) {
- StringBuilder s = new StringBuilder();
-
- s.append(indent).append(name).append(" ").append(fieldRange).append("\n");
-
- for (AIdRange range : children.keySet()) {
- s.append(indent).append(range).append("\n");
- AIdField child = children.get(range);
- if (child != null) {
- s.append(child.toString(indent + " "));
- }
- }
-
- return s.toString();
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/utils/AIdHelper.java b/graphics/AtlantisJava/src/atlantis/utils/AIdHelper.java
deleted file mode 100755
index 48561f8232e..00000000000
--- a/graphics/AtlantisJava/src/atlantis/utils/AIdHelper.java
+++ /dev/null
@@ -1,599 +0,0 @@
-package atlantis.utils;
-
-import java.util.ArrayList;
-
-/**
- * This class contains methods for extracting various properties from the 32 bit
- * identifiers used for hits. It works very similarly to the IdHelpers in Athena,
- * hence its name.
- *
- * @author Eric Jansen
- */
-public class AIdHelper {
-
- private static ANewIdHelper idHelper = null;
-
- /**
- * Returns the decoded athena identifier (id) as a string, resp. an
- * array of strings: first item is the full id expanded (decoded) and
- * particular subparts are separated by "/" in one sting, further
- * interesting subparts of the decoded id are provided in the following
- * items of the array with an explanation given.
- * So far (2009-01-20), this is implemented only for LAr and Tile, for
- * other subsystems only first array item is returned with the expanded
- * id.
- * @param id int compact identifier
- * @return String decoded identifier
- */
- public static String[] getFullIdentifier(long id)
- {
- // more than 10 items should not be necessary
- ArrayList<String> r = new ArrayList<String>(10);
- String s = null;
-
- try
- {
- switch (subDetector(id))
- {
- case 2:
- switch (indetPart(id))
- {
- case 1:
- // Pixel identifiers are complicated and we don't use them anyway.
- throw new AAtlantisException("Pixel identifiers not implemented: " + id);
- case 2:
- s = "2/2/" + sctBarrelEndcap(id) + "/" +
- sctLayerDisk(id) + "/" + sctPhiModule(id) + "/" +
- sctEtaModule(id) + "/" + sctPhiIndex(id) + "/" +
- sctEtaIndex(id);
- r.add(s);
- return r.toArray(new String[r.size()]);
- case 3:
-
- int part = 3;
- int barrelEndcap = trtBarrelEndcap(id);
- int layerWheel = trtLayerWheel(id);
- int phiModule = trtPhiModule(id);
- int strawLayer = trtStrawLayer(id);
- int straw = trtStraw(id);
-
- s = "2" + "/" + part + "/" + barrelEndcap + "/" +
- layerWheel + "/" + phiModule + "/" + strawLayer +
- "/" + straw;
- r.add(s);
- r.add("barrel-endcap: " + barrelEndcap);
- r.add("layer wheel: " + layerWheel);
- r.add("phi module: " + phiModule);
- r.add("straw layer: " + strawLayer);
- r.add("straw: " + straw);
- return r.toArray(new String[r.size()]);
-
- default:
- throw new AAtlantisException("Invalid identifier: " + id);
- }
- case 4:
- int part = larPart(id);
- int sampling = part < 3 ? 0 : larSampling(id);
- int eta = larEta(id);
- int phi = larPhi(id);
-
- if(part == 1) // LAr barrel, LAr endcap
- {
- int barrelEndcap = larBarrelEndcap(id);
- int region = larRegion(id);
- s = "4/" + part + "/" + barrelEndcap + "/" +
- sampling + "/" + region + "/" + eta + "/" + phi;
- r.add(s);
- if(barrelEndcap == 1)
- {
- //r.add("barrel A");
- r.add("EMBA");
- }
- else if(barrelEndcap == -1)
- {
- //r.add("barrel C");
- r.add("EMBC");
- }
- else if(barrelEndcap == 2 || barrelEndcap == 3)
- {
- //r.add("endcap A");
- r.add("EMECA");
- }
- else if(barrelEndcap == -2 || barrelEndcap == -3)
- {
- //r.add("endcap C");
- r.add("EMECC");
- }
- }
- else if(part == 2) // HEC
- {
- int posNeg = larBarrelEndcap(id);
- int region = larRegion(id);
- s = "4/" + part + "/" + posNeg + "/" + sampling + "/" +
- region + "/" + eta + "/" + phi;
- r.add(s);
- if(posNeg == 2)
- {
- //r.add("A");
- r.add("HECA");
- }
- else if(posNeg == -2)
- {
- //r.add("C");
- r.add("HECC");
- }
- }
- else if(part == 3) // FCAL
- {
- int posNeg = larBarrelEndcap(id);
- s = "4/" + part + "/" + posNeg + "/" + sampling + "/" +
- eta + "/" + phi;
- r.add(s);
- if(posNeg == 2)
- {
- //r.add("A");
- r.add("FCALA");
- }
- else if(posNeg == -2)
- {
- //r.add("C");
- r.add("FCALC");
- }
- }
- else
- {
- throw new AAtlantisException("Invalid identifier: " + id);
- }
-
- r.add("sampling: " + sampling); // sampling remains
-
- return r.toArray(new String[r.size()]);
-
- case 5:
- // tile calorimeter (first number of full id is 5)
- int section = tileSection(id);
- int side = tileSide(id);
- int module = tileModule(id);
- int tower = tileTower(id);
- sampling = tileSampling(id);
- int pmt = tilePmt(id);
- int adc = tileAdc(id);
-
- s = "5/" + section + "/" + side + "/" + module + "/" +
- tower + "/" + sampling + "/" + pmt + "/" + adc;
- r.add(s);
-
- r.add("section: " + section);
- r.add("side: " + side);
- r.add("module: " + module);
- r.add("tower: " + tower);
- r.add("sampling: " + sampling);
- r.add("PMT: " + pmt);
- r.add("ADC: " + adc);
-
- return r.toArray(new String[r.size()]);
-
- case 7:
- String technology = technology(id);
- if (technology.equals("MDT"))
- {
- s = "7/" + stationName(id) + "/" + stationEta(id) +
- "/" + stationPhi(id) + "/" + "MDT/" +
- mdtMultiLayer(id) + "/" + mdtTubeLayer(id) + "/" +
- mdtTube(id);
- r.add(s);
- return r.toArray(new String[r.size()]);
- }
- else if (technology.equals("RPC"))
- {
- s = "7/" + stationName(id) + "/" + stationEta(id) + "/" +
- stationPhi(id) + "/" + "RPC/" + rpcDoubletR(id) + "/" +
- rpcDoubletZ(id) + "/" + rpcDoubletPhi(id) + "/" +
- rpcGasGap(id) + "/" + rpcMeasuresPhi(id) + "/" +
- rpcStrip(id);
- r.add(s);
- return r.toArray(new String[r.size()]);
- }
- else if (technology == "TGC")
- {
- s = "7/" + stationName(id) + "/" + stationEta(id) +
- "/" + stationPhi(id) + "/" + "TGC/" + tgcGasGap(id) +
- "/" + tgcIsStrip(id) + "/" + tgcChannel(id);
- r.add(s);
- return r.toArray(new String[r.size()]);
- }
- else if (technology == "CSC")
- {
- s = "7/" + stationName(id) + "/" + stationEta(id) + "/" +
- stationPhi(id) + "/" + "CSC/" + cscChamberLayer(id) +
- "/" + cscWireLayer(id) + "/" + cscMeasuresPhi(id) +
- "/" + cscStrip(id);
- r.add(s);
- return r.toArray(new String[r.size()]);
- }
- else
- {
- throw new AAtlantisException("Invalid identifier: " + id);
- }
- default:
- throw new AAtlantisException("Not yet implemented for identifier: " + id);
- }
- }
- catch (AAtlantisException e)
- {
- s = id + " (unable to decode: " + e.getMessage() + ")";
- r.add(s);
- return r.toArray(new String[r.size()]);
- }
-
- } // getFullIdentifier() ------------------------------------------------
-
-
-
- /** @deprecated */
- public static int subDetector(long id) throws AAtlantisException {
- if (idHelper == null) idHelper = ANewIdHelper.instance();
- return idHelper.get("subdet", id);
- }
-
- /** @deprecated */
- public static int indetPart(long id) throws AAtlantisException {
- if (idHelper == null) idHelper = ANewIdHelper.instance();
- return idHelper.get("part", id);
- }
-
- /** @deprecated */
- public static int trtBarrelEndcap(long id) throws AAtlantisException {
- if (idHelper == null) idHelper = ANewIdHelper.instance();
- return idHelper.get("barrel_endcap", id);
- }
-
-
- /** @deprecated */
- public static int trtLayerWheel(long id) throws AAtlantisException {
- if (idHelper == null) idHelper = ANewIdHelper.instance();
- return idHelper.get("layer_or_wheel", id);
- }
-
- /** @deprecated */
- public static int trtPhiModule(long id) throws AAtlantisException {
- if (idHelper == null) idHelper = ANewIdHelper.instance();
- return idHelper.get("phi_sector", id);
- }
-
- /** @deprecated */
- public static int trtStrawLayer(long id) throws AAtlantisException {
- if (idHelper == null) idHelper = ANewIdHelper.instance();
- return idHelper.get("straw_layer", id);
- }
-
- /** @deprecated */
- public static int trtStraw(long id) throws AAtlantisException {
- if (idHelper == null) idHelper = ANewIdHelper.instance();
- return idHelper.get("straw", id);
- }
-
- /** @deprecated */
- public static final int sctBarrelEndcap(long id) throws AAtlantisException {
- if (idHelper == null) idHelper = ANewIdHelper.instance();
- return idHelper.get("barrel_endcap", id);
- }
-
- /** @deprecated */
- public static int sctLayerDisk(long id) throws AAtlantisException {
- if (idHelper == null) idHelper = ANewIdHelper.instance();
- return idHelper.get("layer", id);
- }
-
- /** @deprecated */
- public static int sctPhiModule(long id) throws AAtlantisException {
- if (idHelper == null) idHelper = ANewIdHelper.instance();
- return idHelper.get("phi_module", id);
- }
-
- /** @deprecated */
- public static int sctEtaModule(long id) throws AAtlantisException {
- if (idHelper == null) idHelper = ANewIdHelper.instance();
- return idHelper.get("eta_module", id);
- }
-
- /** @deprecated */
- public static int sctPhiIndex(long id) throws AAtlantisException {
- if (idHelper == null) idHelper = ANewIdHelper.instance();
- return idHelper.get("side", id); // This seems odd, phi_index <-> side?
- }
-
- /** @deprecated */
- public static int sctEtaIndex(long id) throws AAtlantisException {
- if (idHelper == null) idHelper = ANewIdHelper.instance();
- return idHelper.get("strip", id);
- }
-
- /** @deprecated */
- public static int larPart(long id) throws AAtlantisException {
- if (idHelper == null) idHelper = ANewIdHelper.instance();
- return idHelper.get("part", id);
- }
-
- /** @deprecated */
- public static int larBarrelEndcap(long id) throws AAtlantisException {
- if (idHelper == null) idHelper = ANewIdHelper.instance();
- return idHelper.get("barrel-endcap", id);
- }
-
- /** @deprecated */
- public static int larPosNeg(long id) throws AAtlantisException {
- if (idHelper == null) idHelper = ANewIdHelper.instance();
- return idHelper.get("pos_neg", id);
- }
-
- /** @deprecated */
- public static int larSampling(long id) throws AAtlantisException {
- if (idHelper == null) idHelper = ANewIdHelper.instance();
- return idHelper.get("sampling", id);
- }
-
- /** @deprecated */
- public static int larRegion(long id) throws AAtlantisException {
- if (idHelper == null) idHelper = ANewIdHelper.instance();
- return idHelper.get("region", id);
- }
-
- /** @deprecated */
- public static int larEta(long id) throws AAtlantisException {
- if (idHelper == null) idHelper = ANewIdHelper.instance();
- if (larPart(id) < 3) {
- return idHelper.get("eta", id);
- } else {
- return idHelper.get("eta-fcal", id);
- }
- }
-
- /** @deprecated */
- public static int larPhi(long id) throws AAtlantisException {
- if (idHelper == null) idHelper = ANewIdHelper.instance();
- if (larPart(id) < 3) {
- return idHelper.get("phi", id);
- } else {
- return idHelper.get("phi-fcal", id);
- }
- }
-
- /** @deprecated */
- public static int larModule(long id) throws AAtlantisException {
- if (idHelper == null) idHelper = ANewIdHelper.instance();
- return idHelper.get("module", id);
- }
-
-
- /** @deprecated */
- public static boolean larIsBarrel(long id) throws AAtlantisException
- {
- switch(Math.abs(larBarrelEndcap(id)))
- {
- case 1:
- return true; // yes, it's barrel
- case 2:
- return false; // is endcap
- case 3:
- return false; // is endcap
- default:
- throw new AAtlantisException("Not a LAr identifier: " + id);
- }
- }
-
- /** @deprecated */
- public static int tileSection(long id) throws AAtlantisException {
- if (idHelper == null) idHelper = ANewIdHelper.instance();
- return idHelper.get("section", id);
- }
-
- /** @deprecated */
- public static int tileSide(long id) throws AAtlantisException {
- if (idHelper == null) idHelper = ANewIdHelper.instance();
- return idHelper.get("side", id);
- }
-
- /** @deprecated */
- public static int tileModule(long id) throws AAtlantisException {
- if (idHelper == null) idHelper = ANewIdHelper.instance();
- return idHelper.get("module", id);
- }
-
- /** @deprecated */
- public static int tileTower(long id) throws AAtlantisException {
- if (idHelper == null) idHelper = ANewIdHelper.instance();
- return idHelper.get("tower", id);
- }
-
- /** @deprecated */
- public static int tileSampling(long id) throws AAtlantisException {
- if (idHelper == null) idHelper = ANewIdHelper.instance();
- return idHelper.get("sampling", id);
- }
-
- /** @deprecated */
- public static int tilePmt(long id) throws AAtlantisException {
- if (idHelper == null) idHelper = ANewIdHelper.instance();
- return idHelper.get("pmt", id);
- }
-
- /** @deprecated */
- public static int tileAdc(long id) throws AAtlantisException {
- if (idHelper == null) idHelper = ANewIdHelper.instance();
- return idHelper.get("adc", id);
- }
-
-
- /**
- * Decodes Athena 32-bit ID to following form (5 is Tile):
- * 5/section/side/module/tower/sampling/pmt/adc - official identifier
- *
- * Identifier used by TileCal collaboration, conversion is clear from the
- * code and is explained in Sasha Solodkov's email on 2006-09-18
- *
- * @param id int
- * @return String
- */
- public static String getDecodedTileIndentifier(long id)
- {
- try
- {
- int sec = tileSection(id);
- int side = tileSide(id);
- int mod = tileModule(id);
- int tow = tileTower(id);
- int samp = tileSampling(id);
-
- // section/side/module into decoded form
- String secSideMod = "\n[could not work out section/side]";
- mod++;
- if(sec == 1 && side == 1) secSideMod = "LBA" + mod;
- if(sec == 1 && side == -1) secSideMod = "LBC" + mod;
- if(sec == 2 && side == 1) secSideMod = "EBA" + mod;
- if(sec == 3 && side == 1) secSideMod = "EBA" + mod;
- if(sec == 2 && side == -1) secSideMod = "EBC" + mod;
- if(sec == 3 && side == -1) secSideMod = "EBC" + mod;
-
- // sampling/tower into decoded form
- String sampTow = "\n[could not work out sampling/tower]";
- if(samp == 0) sampTow = "A" + (int)(tow + 1);
- if(samp == 1) sampTow = "B" + (int)(tow + 1);
- if(samp == 2) sampTow = "D" + (int)(tow/2);
- if(samp == 3)
- {
- if(tow == 10) sampTow = "E1";
- if(tow == 11) sampTow = "E2";
- if(tow == 13) sampTow = "E3";
- if(tow == 15) sampTow = "E4";
- }
-
- return secSideMod + " " + sampTow;
- }
- catch (AAtlantisException e)
- {
- return id + " (unable to decode: " + e.getMessage() + ")";
- }
- }
-
-
- /** @deprecated */
- public static String stationName(long id) throws AAtlantisException {
- if (idHelper == null) idHelper = ANewIdHelper.instance();
- return idHelper.getString("stationName", id);
- }
-
- /** @deprecated */
- public static String technology(long id) throws AAtlantisException {
- if (idHelper == null) idHelper = ANewIdHelper.instance();
- return idHelper.getString("technology", id);
- }
-
- /** @deprecated */
- public static int stationEta(long id) throws AAtlantisException {
- if (idHelper == null) idHelper = ANewIdHelper.instance();
- return idHelper.get("stationEta", id);
- }
-
- /** @deprecated */
- public static int stationPhi(long id) throws AAtlantisException {
- if (idHelper == null) idHelper = ANewIdHelper.instance();
- return idHelper.get("stationPhi", id);
- }
-
- /** @deprecated */
- public static int mdtMultiLayer(long id) throws AAtlantisException {
- if (idHelper == null) idHelper = ANewIdHelper.instance();
- return idHelper.get("multiLayer", id);
- }
-
- /** @deprecated */
- public static int mdtTubeLayer(long id) throws AAtlantisException {
- if (idHelper == null) idHelper = ANewIdHelper.instance();
- return idHelper.get("tubeLayer", id);
- }
-
- /** @deprecated */
- public static int mdtTube(long id) throws AAtlantisException {
- if (idHelper == null) idHelper = ANewIdHelper.instance();
- return idHelper.get("tube", id);
- }
-
- /** @deprecated */
- public static int rpcDoubletR(long id) throws AAtlantisException {
- if (idHelper == null) idHelper = ANewIdHelper.instance();
- return idHelper.get("doubletR", id);
- }
-
- /** @deprecated */
- public static int rpcDoubletZ(long id) throws AAtlantisException {
- if (idHelper == null) idHelper = ANewIdHelper.instance();
- return idHelper.get("doubletZ", id);
- }
-
- /** @deprecated */
- public static int rpcDoubletPhi(long id) throws AAtlantisException {
- if (idHelper == null) idHelper = ANewIdHelper.instance();
- return idHelper.get("doubletPhi", id);
- }
-
- /** @deprecated */
- public static int rpcGasGap(long id) throws AAtlantisException {
- if (idHelper == null) idHelper = ANewIdHelper.instance();
- return idHelper.get("rpcGasGap", id);
- }
-
- /** @deprecated */
- public static int rpcMeasuresPhi(long id) throws AAtlantisException {
- if (idHelper == null) idHelper = ANewIdHelper.instance();
- return idHelper.get("rpcMeasuresPhi", id);
- }
-
- /** @deprecated */
- public static int rpcStrip(long id) throws AAtlantisException {
- if (idHelper == null) idHelper = ANewIdHelper.instance();
- return idHelper.get("rpcStrip", id);
- }
-
- /** @deprecated */
- public static int tgcGasGap(long id) throws AAtlantisException {
- if (idHelper == null) idHelper = ANewIdHelper.instance();
- return idHelper.get("tgcGasGap", id);
- }
-
- /** @deprecated */
- public static int tgcIsStrip(long id) throws AAtlantisException {
- if (idHelper == null) idHelper = ANewIdHelper.instance();
- return idHelper.get("isStrip", id);
- }
-
- /** @deprecated */
- public static int tgcChannel(long id) throws AAtlantisException {
- if (idHelper == null) idHelper = ANewIdHelper.instance();
- return idHelper.get("channel", id);
- }
-
- /** @deprecated */
- public static int cscChamberLayer(long id) throws AAtlantisException {
- if (idHelper == null) idHelper = ANewIdHelper.instance();
- return idHelper.get("chamberLayer", id);
- }
-
- /** @deprecated */
- public static int cscWireLayer(long id) throws AAtlantisException {
- if (idHelper == null) idHelper = ANewIdHelper.instance();
- return idHelper.get("wireLayer", id);
- }
-
- /** @deprecated */
- public static int cscMeasuresPhi(long id) throws AAtlantisException {
- if (idHelper == null) idHelper = ANewIdHelper.instance();
- return idHelper.get("cscMeasuresPhi", id);
- }
-
- /** @deprecated */
- public static int cscStrip(long id) throws AAtlantisException {
- if (idHelper == null) idHelper = ANewIdHelper.instance();
- return idHelper.get("cscStrip", id);
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/utils/AIdRange.java b/graphics/AtlantisJava/src/atlantis/utils/AIdRange.java
deleted file mode 100644
index b38d5523882..00000000000
--- a/graphics/AtlantisJava/src/atlantis/utils/AIdRange.java
+++ /dev/null
@@ -1,392 +0,0 @@
-package atlantis.utils;
-
-import java.util.Arrays;
-import org.w3c.dom.Node;
-
-
-/**
- * Class representing a range of possible values for an identifier field.
- *
- * @author Eric Jansen
- */
-class AIdRange {
-
- /** Group the field belongs to, ranges of the same group should be merged. */
- private String group = null;
-
- /** Parent field, needed only for printing of labelled fields. */
- AIdField parent = null;
-
- /** A discrete range with values specified in this array. */
- private int[] values = null;
-
- /** A continuous range from min to max (if values == null). */
- private int minValue, maxValue;
-
- /**
- * Empty constructor, creates an empty range.
- */
- AIdRange() {
- this.values = new int[0];
- }
-
- /**
- * Continuous range constructor, contains all values >= minValue <= maxValue.
- * @param minValue first value in the range
- * @param maxValue last value in the range
- * @throws AAtlantisException
- */
- AIdRange(int minValue, int maxValue) throws AAtlantisException {
-
- if (minValue > maxValue) {
- throw new AAtlantisException("Invalid range: " + minValue + " -> " + maxValue);
- }
-
- this.minValue = minValue;
- this.maxValue = maxValue;
- }
-
- /**
- * Discrete range constructor, contains the values given in values[].
- * @param values ordered array of values
- */
- AIdRange(int[] values) {
- this.values = values;
- }
-
- /**
- * XML constructor, initialize the range from a <range> element.
- * @param parent id field the values belong to
- * @param group group this field belongs to
- * @param node <range> XML element
- * @throws AAtlantisException
- */
- AIdRange(AIdField parent, String group, Node node) throws AAtlantisException {
-
- String fieldName = node.getAttributes().getNamedItem("field").getNodeValue();
- this.parent = parent;
- this.group = group;
-
- Node minValueAttr = node.getAttributes().getNamedItem("minvalue");
- Node maxValueAttr = node.getAttributes().getNamedItem("maxvalue");
-
- if (minValueAttr != null && maxValueAttr != null) {
-
- minValue = parent.valueToInt(fieldName, minValueAttr.getNodeValue());
- maxValue = parent.valueToInt(fieldName, maxValueAttr.getNodeValue());
-
- if (minValue > maxValue) {
- throw new AAtlantisException("Invalid range: " + minValue + " -> " + maxValue);
- }
-
- } else {
- Node valueAttr = node.getAttributes().getNamedItem("value");
- Node valuesAttr = node.getAttributes().getNamedItem("values");
-
- if (valueAttr != null) {
- values = new int[1];
- values[0] = parent.valueToInt(fieldName, valueAttr.getNodeValue());
- } else if (valuesAttr != null) {
- String[] list = valuesAttr.getNodeValue().split(" ");
- values = new int[list.length];
- for (int i=0; i<list.length; i++) {
- values[i] = parent.valueToInt(fieldName, list[i]);
- }
- } else {
- values = new int[0];
- }
- }
- }
-
- /**
- * Get group name for this range.
- * @return group name
- */
- String group() {
- return group;
- }
-
- /**
- * Check if the range contains value.
- * @param value value to check
- * @return true if value is part of this range
- */
- boolean contains(int value) {
- if (values == null) {
- if (value >= minValue && value <= maxValue) {
- return true;
- } else {
- return false;
- }
- } else {
- for (int val : values) {
- if (val == value) {
- return true;
- }
- }
- return false;
- }
- }
-
- /**
- * Check if the range fully contains another range.
- * @param range range to check
- * @return true if all values in the argument are in this range
- */
- boolean contains(AIdRange range) {
- if (range.values == null) {
- for (int value=range.minValue; value<=range.maxValue; value++) {
- if (!this.contains(value)) return false;
- }
- } else {
- for (int value : range.values) {
- if (!this.contains(value)) return false;
- }
- }
-
- return true;
- }
-
- /**
- * Check if this range equals another.
- * @param obj other range
- * @return true if obj is an AIdRange object and its values match
- */
- @Override
- public boolean equals(Object obj) {
-
- if (!(obj instanceof AIdRange)) {
- return false;
- }
-
- AIdRange other = (AIdRange)obj;
-
- if (values == null && other.values == null) {
-
- // Continuous range, check boundaries
- if (minValue == other.minValue && maxValue == other.maxValue) {
- return true;
- } else {
- return false;
- }
-
- } else if (values == null) {
-
- // Continuous and discrete range
- if (other.values.length == maxValue - minValue + 1
- && other.values[other.values.length-1] == maxValue
- && other.values[0] == minValue) {
- return true;
- } else {
- return false;
- }
-
- } else if (other.values == null) {
-
- // Discrete and continuous range
- if (values.length == other.maxValue - other.minValue + 1
- && values[values.length-1] == other.maxValue
- && values[0] == other.minValue) {
- return true;
- } else {
- return false;
- }
-
- } else {
-
- // Discrete range, check length and individual entries
- if (values.length != other.values.length) {
- return false;
- } else {
- for (int i=0; i<values.length; i++) {
- if (values[i] != other.values[i]) {
- return false;
- }
- }
-
- return true;
- }
- }
- }
-
- /**
- * Check if the range specifies any values or not.
- * @return true if the range is empty, false if not
- */
- public boolean isEmpty() {
- return values != null && values.length == 0;
- }
-
- /**
- * Hash code to facilitate lookups.
- * @return hash
- */
- @Override
- public int hashCode() {
- int hash = 7;
- hash = 89 * hash + Arrays.hashCode(this.values);
- hash = 89 * hash + this.minValue;
- hash = 89 * hash + this.maxValue;
- return hash;
- }
-
- /**
- * Merge the given range with the current one.
- * @param other range to be added to the current range
- * @return current range after new range has been added
- * @throws AAtlantisException
- */
- AIdRange add(AIdRange other) throws AAtlantisException {
-
- if (values == null && other.values == null) {
-
- // Both are continuous ranges, find min and max values.
- minValue = Math.min(minValue, other.minValue);
- maxValue = Math.max(maxValue, other.maxValue);
-
- } else if (values == null || other.values == null) {
-
- // One is continous, the other is discrete.
- if (values == null) {
-
- if (other.values.length > 0) {
- // If the discrete range is not empty, find min and max values.
- minValue = Math.min(minValue, other.values[0]);
- maxValue = Math.max(maxValue, other.values[other.values.length-1]);
- }
-
- // If we add an empty range, there is nothing to be done.
-
- } else {
-
- if (values.length > 0) {
- // If the discrete range is not empty, find min and max values.
- minValue = Math.min(values[0], other.minValue);
- maxValue = Math.max(values[values.length-1], other.maxValue);
- values = null;
- } else {
- // if this is an empty range, copy min and max from the other.
- minValue = other.minValue;
- maxValue = other.maxValue;
- values = null;
- }
- }
-
- } else {
-
- // Both ranges are discrete, count how many unique elements.
- int numValues = values.length;
- for (int value : other.values) {
- if (!this.contains(value)) {
- numValues++;
- }
- }
-
- // Merge two arrays, skipping duplicates and keeping order.
- int[] newValues = new int[numValues];
- for (int i=0, j=0, k=0; i<numValues; i++) {
- if (j == values.length) {
-
- newValues[i] = other.values[k++];
-
- } else if (k == other.values.length) {
-
- newValues[i] = values[j++];
-
- } else {
-
- if (this.values[j] == other.values[k]) {
- newValues[i] = values[j++];
- k++;
- } else if (values[j] < other.values[k]) {
- newValues[i] = values[j++];
- } else {
- newValues[i] = other.values[k++];
- }
- }
- }
-
- values = newValues;
- }
-
- return this;
- }
-
- /**
- * Check the allowed values and return the number of bits needed to encode them.
- * @return number of bits
- */
- int bits() {
-
- // Cound how many values this field can have.
- int numValues;
- if (values != null) {
- numValues = values.length;
- } else {
- numValues = maxValue - minValue + 1;
- }
-
- if (numValues <= 2) {
- // A field takes at least 1 bit, so return 1.
- return 1;
- } else {
- // The number of bits required to store numValues different values.
- return (int)(Math.ceil(Math.log(numValues) / Math.log(2)));
- }
- }
-
- /**
- * Get the field value corresponding to the given range index. For example
- * for a field that has range [ -2, 0, +2 ], get(0) will return -2.
- * @param index, decoded from compact identifier
- * @return field value
- * @throws AAtlantisException
- */
- int get(int index) throws AAtlantisException {
- if (values != null) {
- if (index < values.length) {
- return values[index];
- } else {
- throw new AAtlantisException("Invalid field index: " + index);
- }
- } else {
- if (minValue + index <= maxValue) {
- return minValue + index;
- } else {
- throw new AAtlantisException("Invalid field value: " + index);
- }
- }
- }
-
- /**
- * Convert the range into a convenient form for printing.
- * @return formatted string representing range
- */
- @Override
- public String toString() {
- StringBuilder s = new StringBuilder();
- s.append("[ ");
-
- if (values == null) {
- if (parent != null && parent.hasLabels()) {
- String minLabel = parent.getLabel(minValue);
- String maxLabel = parent.getLabel(maxValue);
- s.append(minLabel).append("=").append(minValue);
- s.append(" -> ").append(maxLabel).append("=").append(maxValue);
- } else {
- s.append(minValue).append(" -> ").append(maxValue).append(" ");
- }
- } else {
- for (int value : values) {
- if (parent != null && parent.hasLabels()) {
- String label = parent.getLabel(value);
- s.append(label).append("=").append(value).append(" ");
- } else {
- s.append(value).append(" ");
- }
- }
- }
- s.append("]");
- return s.toString();
- }
-}
\ No newline at end of file
diff --git a/graphics/AtlantisJava/src/atlantis/utils/AIntHashtable.java b/graphics/AtlantisJava/src/atlantis/utils/AIntHashtable.java
deleted file mode 100755
index 04b0adbcd5f..00000000000
--- a/graphics/AtlantisJava/src/atlantis/utils/AIntHashtable.java
+++ /dev/null
@@ -1,79 +0,0 @@
-package atlantis.utils;
-
-
-// does not copy input arrays for efficiency
-// these arrays must not be modified !
-
-public class AIntHashtable {
-
- int size;
- int shift;
- int[] key;
- int[] value;
- int[] next;
- int[] first;
-
- /*
- public AIntHashtable(int size) {
- this.size=size;
- shift=0;
- count = 0;
- key = new int[size];
- value = new int[size];
- next = new int[size];
- first = new int[size];
- for (int i = 0; i < size; ++i)
- first[i] = -1;
- }
- */
-
- public AIntHashtable(int[] key, int[] value) {
- this.size=key.length;
- this.key=key;
- this.value=value;
- //
- int mask=0;
- for(int i=0; i<size; ++i) {
- mask=mask|key[i];
- if((mask&1)==1) break;
- }
- shift=0;
- for(int i=0; i<size; ++i) {
- if((mask>>i&1)==1) break;
- shift++;
- }
- //
- next=new int[size];
- first=new int[size];
- for(int i=0; i<size; ++i)
- first[i]=-1;
- for(int i=0; i<size; ++i) {
- int index=(key[i]>>shift)%size;
- if(index<0) index=-index;
- this.next[i]=first[index];
- first[index]=i;
- }
- }
-
- public AIntHashtable(int[] key) {
- this(key, makeIndexArray(key.length));
- }
-
- private static int[] makeIndexArray(int length) {
- int[] temp=new int[length];
- for(int i=0; i<length; ++i)
- temp[i]=i;
- return temp;
- }
-
- public int get(int key) {
- if(size<=0) return -1;
- int index=(key>>shift)%size;
- if(index<0) index=-index;
- for(int e=first[index]; e!=-1; e=next[e])
- if(this.key[e]==key)
- return value[e];
- return -1;
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/utils/ALogger.java b/graphics/AtlantisJava/src/atlantis/utils/ALogger.java
deleted file mode 100644
index 3079c193173..00000000000
--- a/graphics/AtlantisJava/src/atlantis/utils/ALogger.java
+++ /dev/null
@@ -1,213 +0,0 @@
-package atlantis.utils;
-
-import java.io.IOException;
-import java.io.File;
-import java.util.Properties;
-
-import org.apache.log4j.Logger;
-import org.apache.log4j.Level;
-import org.apache.log4j.PatternLayout;
-import org.apache.log4j.PropertyConfigurator;
-import org.apache.log4j.FileAppender;
-import org.apache.log4j.ConsoleAppender;
-import org.apache.log4j.Layout;
-
-
-
-/**
- * The class is a common wrapper for logging facility, uses
- * apache-logging library log4j (more complex and powerful than Java
- * native java.util.logging (e.g. flushing is automated, allows customised
- * message logs layout, different levels for different sources, etc).
- * Because it is subclassing from Logger, it needs LoggerFactory mechanism
- * to be in place. Reference to it is given via Properties, if more
- * complex properties are to be defined, it will be put in a file (such
- * properties file must be accessed generically so that it is load in
- * correctly no matter whether Atlantis is run locally (and have distribution
- * directories available) or from a .jar file (webstart execution).
- *
- * @author Zdenek Maxa
- */
-public final class ALogger extends Logger
-{
- // the class is a singleton, reference to itself
- private static Logger root = null;
-
- // it's enough to instantiate a factory once and for all
- private static ALoggerFactory loggerFactory = new ALoggerFactory();
-
- // logging layouts definition (format characters explained at PatternLayout class)
- private static final String CONSOLE_LOGGING_LAYOUT =
- "%-5p %d{yyyy-MM-dd HH:mm:ss,SSS} %m%n";
- // %c - cathegory (must be specified at .getLogger(Class.class))
- private static final String FILE_LOGGING_LAYOUT =
- "%-5p %d{yyyy-MM-dd HH:mm:ss,SSS} %m%n (%c thread:%t)%n";
- // contains some format characters which are slow - *only* for debugging
- private static final String FILE_LOGGING_LAYOUT_FULL =
- "%-5p %d{yyyy-MM-dd HH:mm:ss,SSS} %m%n (%c.%M() [line %L], thread:%t)%n";
-
-
-
- // logging levels as defined in org.apache.log4j.Level
- // this variable is used via a getter method to print out command
- // line options help
- private static String stringLevels =
- Level.TRACE.toString() + ", " + // int value: 10000
- Level.DEBUG.toString() + ", " + // int value: 10000
- Level.INFO.toString() + ", " + // int value: 20000
- Level.WARN.toString() + ", " + // int value: 30000
- Level.ERROR.toString() + ", " + // int value: 30000
- Level.FATAL.toString(); // int value: 50000
-
- // default logging level (if it wasn't specified or was incorrect)
- private static Level defaultLevel = Level.INFO;
-
-
- /**
- * The constructor must be protected so that it is visible
- * from ALoggerFactory. Should not be instantiated directly, but via
- * .getInstance()
- * @param name
- */
- protected ALogger(String name)
- {
- super(name);
-
- } // ALogger() ----------------------------------------------------------
-
-
-
- /**
- * initialize(String[] options)
- * Initializes the logger
- * @param level severity level as read from the command line option
- * @param destination destination to write logs to, as read from the command line
- */
- public static void initialize(String level, String destination)
- {
-
- // set logging level, if level contains nonsense, set default
- Level currentLevel = Level.toLevel(level, defaultLevel);
-
-
- // set properties - LogggerFactory
- // log4j.loggerFactory=atlantis.utils.ALoggerFactory
- // this may also be done via properties file (if necessary for
- // more complex logging configuration without necessity to
- // recompile). properties file is contains pairs key=value
- // caution: must be accessed generically (so that it also
- // works when atlantis is packed in a .jar file)
- // without setting LoggerFactory - ClassCastException when getting
- // Logger via ALogger.getLogger("Atlantis");
- Properties up = new Properties();
- up.setProperty("log4j.loggerFactory",
- "atlantis.utils.ALoggerFactory");
- PropertyConfigurator.configure(up);
-
- // if instantiated this way
- // logger = new ALogger();
- // -> NullPointerException when adding appender
-
- // all loggers created afterwards will have properties of this root logger
- root = Logger.getRootLogger();
-
- root.setLevel(currentLevel);
-
-
- // logging will always be done to console (System.out - stdout)
-
- Layout consoleLayout = new PatternLayout(CONSOLE_LOGGING_LAYOUT);
- ConsoleAppender ca = new ConsoleAppender(consoleLayout,
- ConsoleAppender.SYSTEM_OUT);
- ca.setImmediateFlush(true);
- root.addAppender(ca);
-
- root.info("Logging to console (System.out) initialised");
-
- // if a file was specified as logging destination, then logs
- // will be duplicated to that file as well
- if(destination != null)
- {
- // check if the file already exists
- File f = new File(destination);
- boolean fileExists = false;
- if(f.exists())
- {
- fileExists = true;
- }
- try
- {
- // some file was specified on the command line
- Layout fileLayout = new PatternLayout(FILE_LOGGING_LAYOUT);
- // if the file exists, it will be appended to
- FileAppender fa = new FileAppender(fileLayout, destination);
- fa.setImmediateFlush(true);
- root.addAppender(fa);
- if(fileExists)
- {
- String msg = "================================== " +
- "Log file " + destination + " exists, " +
- "opening it for appending";
- root.warn(msg);
- }
- root.warn("Logging to " + destination + " initialised");
- }
- catch(IOException ex)
- {
- root.warn("Can't write log messages to: "+ destination);
- }
- }
-
- } // initialize() -------------------------------------------------------
-
-
-
- public static ALogger getLogger(String name)
- {
- if(root != null)
- {
- return (ALogger) Logger.getLogger(name, loggerFactory);
- }
- else
- {
- // logger hasn't been initialised yet, initialise with
- // default values (i.e. logging only to console with INFO level)
- try
- {
- initialize(defaultLevel.toString(),null);
- }
- catch(Exception ex)
- {
- // this exception should never occur
- ex.printStackTrace();
- }
- return (ALogger) Logger.getLogger(name, loggerFactory);
- }
-
- } // getLogger() --------------------------------------------------------
-
-
-
- public static ALogger getLogger(Class clazz)
- {
- return ALogger.getLogger(clazz.getName());
-
- } // getLogger() --------------------------------------------------------
-
-
-
- public void forcedLog(String fqcn, Object msg, Throwable t)
- {
- super.forcedLog(fqcn, Level.ALL, msg, t);
-
- } // forcedLog() --------------------------------------------------------
-
-
-
- public static String getStringLevels()
- {
- return stringLevels;
-
- } // getStringLevels() --------------------------------------------------
-
-} // class ALogger ==========================================================
diff --git a/graphics/AtlantisJava/src/atlantis/utils/ALoggerFactory.java b/graphics/AtlantisJava/src/atlantis/utils/ALoggerFactory.java
deleted file mode 100644
index f4b5a772b9f..00000000000
--- a/graphics/AtlantisJava/src/atlantis/utils/ALoggerFactory.java
+++ /dev/null
@@ -1,25 +0,0 @@
-package atlantis.utils;
-
-import org.apache.log4j.Logger;
-import org.apache.log4j.spi.LoggerFactory;
-
-/**
- * LoggerFactory as used by ALogger - necessary when subclassing Logger
- * @author Zdenek Maxa
- */
-public class ALoggerFactory implements LoggerFactory
-{
-
- /**
- * The constructor should be public as it will be called by
- * configurators in different packages.
- */
- public ALoggerFactory() { }
-
-
- public Logger makeNewLoggerInstance(String name)
- {
- return new ALogger(name);
- }
-
-} // class ALoggerFactory ===================================================
diff --git a/graphics/AtlantisJava/src/atlantis/utils/AMath.java b/graphics/AtlantisJava/src/atlantis/utils/AMath.java
deleted file mode 100755
index f52b826ab65..00000000000
--- a/graphics/AtlantisJava/src/atlantis/utils/AMath.java
+++ /dev/null
@@ -1,328 +0,0 @@
-package atlantis.utils;
-
-import java.awt.geom.Point2D;
-
-
-/**
- * Contains generally useful constants and mathematical functions
- * and functions for formatting
- */
-public class AMath
-{
- final public static double TWO_PI = 2. * Math.PI;
- final public static double PI_BY_8 = Math.PI / 8.;
-
- // Constant giving the unicode value of a small Greek eta.
- final static public String ETA = "\u03B7";
- // Constant giving the unicode value of a small Greek lambda.
- final static public String LAMBDA = "\u03BB";
- // Unicode capital Lambda
- final static public String LAMBDACAP = "\u039B";
- // Unicode lowercase gamma
- final static public String GAMMA = "\u03B3";
- // Constant giving the unicode value of a small Greek rho.
- final static public String RHO = "\u03C1";
- // Constant giving the unicode value of a small Greek phi.
- // final static public String PHI = "\u03C6"; // small
- final static public String PHI = "\u03A6"; // capital
- // Constant giving the unicode value of degrees symbol.
- final static public String DEGREES = "\u00B0";
- // Constant giving the unicode value of a capital Greek delta.
- final static public String DELTA = "\u0394";
- // final static public String PRIME = "\u00b4";
- final static public String PRIME = "'";
- final static public String MICRO = "\u00b5";
- final static public String TIMES = "\u00d7";
- final static public String ASYMP = "\u2248";
- final static public String PROP = "\u221D";
- final static public String RADIC = "\u221A";
-
- final static public String PLUSMINUS = "\u00b1";
- final static public String NOTEQUAL = "\u2260";
- final static public String LESSEQUAL = "\u2264";
- final static public String GREATEREQUAL = "\u2265";
- final static public String PION = "\u03C0";
- final static public String SIGMA = "\u03A3";
- final static public String TAU = "\u03C4";
- final static public String XI = "\u039E";
- final static public String OMEGA = "\u03A9";
- final static public String MU = "\u03BC";
-
- final static public String RARROW = "\u279D"; // right arrow
- final static public String DOT = "\u00b7"; // middle dot
-
-
- /**
- * Use the unicode overline diacritical mark to place an overline over the preceeding character
- *
- */
- final static public String OVERLINE = "\u0305";
- // superscript plus and minus
- final static public String SUPPLUS = "\u207A";
- final static public String SUPMINUS = "\u207B";
-
-
- /**
- * Returns eta with respect to z = 0.
- * @param z double z coordinate
- * @param rho double eta coordinate
- * @return double eta
- */
- public static double etaAbs(double z, double rho) {
- double zrho = z / rho;
- return Math.log(zrho + Math.sqrt(zrho * zrho + 1.));
- }
-
- public static double tanLambda(double eta)
- {
- double e = Math.exp(eta);
- return 0.5 * (e-1./e);
- }
-
- public static double lambda(double eta)
- {
- double e = Math.exp(eta);
- return Math.atan(0.5 * (e-1./e));
- }
-
- public static double getPFromPttL(double pT, double tL)
- {
- return Math.abs(pT / Math.cos(Math.atan(tL)));
- }
-
- public static double getPtFromPtL(double p, double tL)
- {
- return Math.abs(p * Math.cos(Math.atan(tL)));
- }
-
- /**
- * Force phi into range [0,360) degrees.
- * @param phi angle in degrees
- * @return equivalent angle in range [0,360) degrees
- */
- public static double nearestPhiDegrees(double phi)
- {
- while(phi >= 360.)
- {
- phi -= 360;
- }
- while(phi < 0.)
- {
- phi += 360;
- }
- return phi;
- }
-
- /**
- * Force phi into range [0,2 pi) radians.
- * @param phi angle in radians
- * @return equivalent angle in range [0,2 pi) radians
- */
- public static double nearestPhiRadians(double phi)
- {
- while(phi >= TWO_PI)
- {
- phi -= TWO_PI;
- }
- while(phi<0.)
- {
- phi += TWO_PI;
- }
- return phi;
- }
-
- /**
- * Force phi into range [phiMid-180,phiMid+360) degrees.
- * @param phi angle in degrees
- * @param phiMid mid-point of required phi range
- * @return equivalent angle in range [phiMid-180,phiMid+360) degrees
- */
- public static double nearestPhiDegrees(double phi, double phiMid)
- {
- while(phi-phiMid >= 180.)
- {
- phi -= 360;
- }
- while(phi-phiMid < -180.)
- {
- phi += 360;
- }
- return phi;
- }
-
- /**
- * Force phi into range [phiMid-pi,phiMid+pi) radians.
- * @param phi angle in degrees
- * @param phiMid phiMid mid-point of required phi range
- * @return equivalent angle in range [phiMid-pi,phiMid+pi) radians
- */
- public static double nearestPhiRadians(double phi, double phiMid)
- {
- while(phi - phiMid >= Math.PI)
- {
- phi -= TWO_PI;
- }
- while(phi - phiMid < -Math.PI)
- {
- phi += TWO_PI;
- }
- return phi;
- }
-
- public static double[] splitLineIntoPieces(double[] input, int numPieces)
- {
- if(input.length != 2)
- {
- return input;
- }
- double[] output = new double[numPieces + 1];
- for(int p = 0; p < numPieces + 1; p++)
- {
- output[p] = input[0] +
- (input[1] - input[0]) * (double) p / (double) numPieces;
- }
- return output;
- }
-
-/**
- * "Stretches" the values in the input array over a longer array.
- * A number numPieces[i] of equally spaced values between input[i] and input[i+1]
- * are put into the output array. So the numPieces array must have the same length
- * as the input array, and the length of the output array is the sum of the
- * elements of numPieces. For example:
- * input = {0.0, 1.0, 5.0} numPieces = {2, 4, 1}
- * output = {0.0, 0.5, 1.0, 2.0, 3.0, 4.0, 5.0}
- * The output array must already exist and have the correct number of entries,
- * otherwise this method will do nothin.
- * Only used by ATGCData.getYXUser().
- * @param input array to stretch
- * @param output stretched array
- * @param numPieces number of output elements corresponding to each input element
- */
- public static void splitArrayIntoPieces(double[] input, double[] output, int[] numPieces)
- {
- // Previously had "output = (double[]) input.clone();" but this is not
- // passed back to the calling code so no point.
- if(input.length != numPieces.length) return;
-
- int totalNumPieces = 0;
- for (int num : numPieces) totalNumPieces += num;
- if(totalNumPieces != output.length) return;
-
- int index = 0;
- for(int i = 0; i < input.length; i++) {
- int nextI = (i + 1) % input.length; // "loop back" to start of input
- double start = input[i];
- double end = input[nextI];
- for(int p = 0; p < numPieces[i]; p++)
- {
- output[index++] = start +
- (end - start) * (double) p / (double) numPieces[i];
- }
- }
- }
-
- /**
- * Calculate angle between two 3-vectors represented by Point2D.Double
- * objects.
- * @param p1
- * @param p2
- * @return angle [radians]
- */
- public static double getAngle(Point2D.Double p1, Point2D.Double p2)
- {
- double dx = p2.x - p1.x;
- double dy = p2.y - p1.y;
- return Math.atan2(dy, dx);
- }
-
- public static Point2D.Double intersectionPoint(
- Point2D.Double p1, Point2D.Double p2, Point2D.Double p3, Point2D.Double p4)
- {
-
- double u = ((p4.x-p3.x)*(p1.y-p3.y)-(p4.y-p3.y)*(p1.x-p3.x)) /
- ((p4.y-p3.y)*(p2.x-p1.x)-(p4.x-p3.x)*(p2.y-p1.y));
- return new Point2D.Double(p1.x+u*(p2.x-p1.x), p1.y+u*(p2.y-p1.y));
- }
-
- public static Point2D.Double intersectionPoint(
- Point2D.Double p1, AVector v1, Point2D.Double p3, AVector v3)
- {
- Point2D.Double p2 = new Point2D.Double(p1.x+v1.dx, p1.y+v1.dy);
- Point2D.Double p4 = new Point2D.Double(p3.x+v3.dx, p3.y+v3.dy);
-
- return intersectionPoint(p1, p2, p3, p4);
- }
-
-
- public static double[] xBox(double x,double dx)
- {
- return new double[] {x-dx,x-dx,x+dx,x+dx};
- }
-
- public static double[] yBox(double y,double dy)
- {
- return new double[] {y-dy,y+dy,y+dy,y-dy};
- }
-
- /**
- * Returns the sign of a double value.
- * Unlike Math.signum() it never returns zero.
- */
- public static double getSign(double value) {
- return (value > 0) ? 1.0 : -1.0;
- }
-
- /**
- * Returns the sign of a int value.
- * Unlike Math.signum() it never returns zero.
- *
- */
- public static int getSign(int value) {
- return (value > 0) ? 1 : -1;
- }
-
- public static float maxAbsInArray(float[] floatArray)
- {
- float maxAbs = Math.abs(floatArray[0]);
- for(int i=1; i<floatArray.length; ++i)
- {
- maxAbs = Math.max(Math.abs(floatArray[i]), maxAbs);
- }
- return maxAbs;
- }
-
- public static float minAbsInArray(float[] floatArray)
- {
- float minAbs = Math.abs(floatArray[0]);
- for(int i=1; i<floatArray.length; ++i)
- {
- minAbs = Math.min(Math.abs(floatArray[i]), minAbs);
- }
- return minAbs;
- }
-
- public static float minNonZeroAbsInArray(float[] floatArray)
- {
- float minAbs = Math.abs(floatArray[0]);
- for(int i=1; i<floatArray.length; ++i)
- {
- if(minAbs == 0.0f && floatArray[i] != 0.0f)
- minAbs = floatArray[i];
- else
- minAbs = Math.min(Math.abs(floatArray[i]), minAbs);
- }
- return minAbs;
- }
-
- public static float deltaR(float phi1, float eta1, float phi2, float eta2){
-
- float deta=Math.abs(eta1-eta2);
- float dphi=Math.abs(phi1-phi2);
- if(dphi>Math.PI)
- dphi=(float)(Math.PI*2.0f)-dphi;
- float dr=(float)Math.sqrt(deta*deta+dphi*dphi);
- return dr;
- }
-
-} // class AMath -------------------------------------------------------------
diff --git a/graphics/AtlantisJava/src/atlantis/utils/ANewIdHelper.java b/graphics/AtlantisJava/src/atlantis/utils/ANewIdHelper.java
deleted file mode 100644
index 5de597b6684..00000000000
--- a/graphics/AtlantisJava/src/atlantis/utils/ANewIdHelper.java
+++ /dev/null
@@ -1,157 +0,0 @@
-package atlantis.utils;
-
-import java.util.HashMap;
-import org.w3c.dom.Node;
-import org.w3c.dom.NodeList;
-
-/**
- * Helper tool for decoding compact readout channel identifiers.
- *
- * @author Eric Jansen
- */
-public final class ANewIdHelper {
-
- /** Singleton instance. */
- private static ANewIdHelper instance = null;
-
- /** Link to ATLAS dictionary. */
- private AIdDictionary atlas = null;
-
- /** Collection of named (sub-)dictionaries. */
- private HashMap<String, AIdDictionary> dictionaries = null;
-
- /** Logging facility. */
- public static ALogger logger = ALogger.getLogger(ANewIdHelper.class);
-
- /**
- * Static construct method, initializes ANewIdHelper from XML dictionaries.
- * @param rootNode XML root node of type IdDict.
- */
- public synchronized static void construct(Node rootNode) throws AAtlantisException {
- if (instance == null) instance = new ANewIdHelper();
- try {
- instance.initialize(rootNode);
- } catch (AAtlantisException e) {
- throw new AAtlantisException("Error initializing ANewIdHelper: " + e.getMessage());
-
- }
- }
-
- /**
- * Obtain instance of ANewIdHelper.
- * @return ANewIdHelper instance.
- */
- public synchronized static ANewIdHelper instance() {
- if (instance == null) {
- throw new Error("Attempted to access ANewIdHelper instance before initialization.");
- }
- return instance;
- }
-
- /**
- * Private constructor.
- */
- private ANewIdHelper() {};
-
- /**
- * Non-static, private initialization method.
- * @param rootNode XML root node of type IdDict.
- */
- private void initialize(Node rootNode) throws AAtlantisException {
- NodeList nodes = rootNode.getChildNodes();
- for (int i=0; i<nodes.getLength(); i++) {
- Node node = nodes.item(i);
- if (node.getNodeType() == Node.ELEMENT_NODE) {
- if ("IdDictionary".equals(node.getNodeName())) {
- String name = node.getAttributes().getNamedItem("name").getNodeValue();
- try {
- if (dictionaries != null && dictionaries.containsKey(name)) {
- AIdDictionary dictionary = dictionaries.get(name);
- dictionary.initialize(node);
- } else {
- if (dictionaries == null) {
- dictionaries = new HashMap<String,AIdDictionary>();
- }
- dictionaries.put(name, new AIdDictionary(node));
- }
- } catch (AAtlantisException e) {
- logger.error("Exception occurred while initializing IdHelper:" + e.getMessage());
- }
- }
- }
- }
-
- if (dictionaries.containsKey("ATLAS")) {
- atlas = dictionaries.get("ATLAS");
- } else {
- throw new AAtlantisException("No 'ATLAS' dictionary found");
- }
- }
-
- /**
- * Check for presence of a named dictionary.
- * @param dictName dictionary name.
- * @return true if dictionary is present, false is not.
- */
- boolean hasDictionary(String dictName) {
- return dictionaries.containsKey(dictName);
- }
-
- /**
- * Return pointer to an existing named dictionary.
- * @param dictName dictionary name
- * @return dictionary object
- */
- AIdDictionary getDictionary(String dictName) throws AAtlantisException {
- if (dictionaries != null && dictionaries.containsKey(dictName)) {
- return dictionaries.get(dictName);
- } else {
- throw new AAtlantisException("Dictionary " + dictName + " could not be found");
- }
- }
-
- /**
- * Add a named dictionary to the idHelper.
- * @param dictName dictionary name
- * @param dict dictionary
- */
- void addDictionary(String dictName, AIdDictionary dict) {
- if (dictionaries == null){
- dictionaries = new HashMap<String,AIdDictionary>();
- }
- dictionaries.put(dictName, dict);
- }
-
- /**
- * Convert a compact identifier into a "/" delimited expanded identifier.
- * @param id compact identifier
- * @return expanded identifier, fields delimited by "/"
- */
- public String getFullIdentifier(long id) throws AAtlantisException {
- return atlas.getFullIdentifier(id);
- }
-
- /**
- * Extract named field from a compact identifier.
- * @param field identifier field name
- * @param id compact identifier
- * @return value of named field
- */
- public int get(String field, long id) throws AAtlantisException {
- return atlas.get(field, id);
- }
-
- /**
- * Extract string value of a named field from a compact identifier. For
- * example:
- * get("stationName", id) = 49
- * getString("stationName", id) = "EIS"
- *
- * @param field identifier field name
- * @param id compact identifier
- * @return string value of named field
- */
- public String getString(String field, long id) throws AAtlantisException {
- return atlas.getString(field, id);
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/utils/APoint.java b/graphics/AtlantisJava/src/atlantis/utils/APoint.java
deleted file mode 100755
index 38c9d1fd4ad..00000000000
--- a/graphics/AtlantisJava/src/atlantis/utils/APoint.java
+++ /dev/null
@@ -1,72 +0,0 @@
-package atlantis.utils;
-
-
-/**
- * Used by APolygon and AClipPolygon in order to perform clipping.
- */
-public class APoint {
-
- public double x, y;
-
- public APoint(APoint p) {
- this.x=p.x;
- this.y=p.y;
- }
-
- public APoint(double x, double y) {
- this.x=x;
- this.y=y;
- }
-
- public double dot_product(double[] normPoint) {
- if(normPoint==null||normPoint.length!=3)
- return 0.0;
- else
- return x*normPoint[0]+y*normPoint[1];
- }
-
- public APoint minus(APoint cgp) {
- if(cgp==null)
- return new APoint(this);
- else
- return new APoint(x-cgp.x, y-cgp.y);
- }
-
- public APoint plus(APoint cgp) {
- if(cgp==null)
- return new APoint(this);
- else
- return new APoint(x+cgp.x, y+cgp.y);
- }
-
- public void scalar_multiply(double d) {
- x*=d;
- y*=d;
- }
-
- public boolean inside(double[] normalizedVector, double distance) {
- if(normalizedVector==null||normalizedVector.length!=3) return false;
- double k=dot_product(normalizedVector)+distance;
-
- return(k<=0);
- }
-
- public double calculate_tls(APoint secondPoint, APoint clipNode, double[] normalized) {
- APoint dv1, dv2;
-
- dv1=minus(clipNode);
- dv2=secondPoint.minus(this);
- return -(dv1.dot_product(normalized)/dv2.dot_product(normalized));
- }
-
- public APoint point_of_intersection(APoint second, double tls) {
- if(second!=null) {
- APoint v=second.minus(this);
-
- if(v!=null) v.scalar_multiply(tls);
- return plus(v);
- } else
- return null;
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/utils/APolygon.java b/graphics/AtlantisJava/src/atlantis/utils/APolygon.java
deleted file mode 100755
index 9a0c4e33bc3..00000000000
--- a/graphics/AtlantisJava/src/atlantis/utils/APolygon.java
+++ /dev/null
@@ -1,238 +0,0 @@
-package atlantis.utils;
-
-
-import java.util.Vector;
-import java.awt.geom.*;
-
-
-/**
- * Used in the process of clipping.
- */
-
-public class APolygon {
- protected Vector nodes=new Vector(5, 10);
-
- public APolygon() {}
-
- public APolygon(double[] x, double[] y) {
- for(int i=0; i<x.length; i++)
- nodes.addElement(new APoint(x[i], y[i]));
-
- if(getSignedArea()<0) {
- Vector newNodes=new Vector(5, 10);
-
- for(int i=nodes.size()-1; i>=0; i--)
- newNodes.addElement(nodes.elementAt(i));
- nodes=newNodes;
- }
- }
-
- public void addPoint(double x, double y) {
- nodes.addElement(new APoint(x, y));
- }
-
- public double getSignedArea() {
- APoint p;
- double[] x=new double[nodes.size()];
- double[] y=new double[nodes.size()];
-
- for(int i=0; i<nodes.size(); i++) {
- p=(APoint)nodes.elementAt(i);
- x[i]=p.x;
- y[i]=p.y;
- }
-
- return getSignedArea(x, y);
- }
-
- // this function returns the ABSOLUT VALUE of the area
- public double getArea() {
- return Math.abs(getSignedArea());
- }
-
- public static double getSignedArea(double[] x, double[] y) {
- if(x.length!=y.length)
- throw new Error("x.length != y.length");
- if(x.length==0) return 0;
-
- double s=0;
-
- for(int i=0; i<x.length-1; i++)
- s+=x[i]*y[i+1]-x[i+1]*y[i];
-
- s+=x[x.length-1]*y[0]-x[0]*y[x.length-1];
- return s/2;
- }
-
- public static double getArea(double[] x, double[] y) {
- return Math.abs(getSignedArea(x, y));
- }
-
- public static Point2D.Double getCenter(double[] x, double[] y, Point2D.Double p) {
- if(x.length==0 || y.length==0) return null;
- if(p==null) p=new Point2D.Double(0, 0);
-
- double s=0, v;
-
- for(int i=0; i<x.length-1; i++) {
- v=x[i]*y[i+1]-x[i+1]*y[i];
- s+=v;
- p.x+=(x[i]+x[i+1])*v;
- p.y+=(y[i]+y[i+1])*v;
- }
-
- v=x[x.length-1]*y[0]-x[0]*y[x.length-1];
- s+=v;
- p.x+=(x[x.length-1]+x[0])*v;
- p.y+=(y[x.length-1]+y[0])*v;
-
- double f=1/(6*s/2);
-
- p.setLocation(p.x*f, p.y*f);
- return p;
- }
-
- public static void scale(double[] x, double[] y, double factor) {
- Point2D.Double center=APolygon.getCenter(x, y, null);
-
- for(int i=0; i<x.length; i++) {
- x[i]=(x[i]-center.x)*factor+center.x;
- y[i]=(y[i]-center.y)*factor+center.y;
- }
- }
-
- /*
- public boolean isClockwise() {
- if (getArea() < 0)
- return true;
- else
- return false;
- }
- */
-
- public APoint getNode(int index) {
- if(index>=0&&index<nodes.size())
- return(APoint)(nodes.elementAt(index));
- else
- return null;
- }
-
- public int nrNodes() {
- return nodes.size();
- }
-
- public boolean clip(AClipPolygon clipPolygon) {
- int i=0;
- int limit=clipPolygon.nrNodes();
-
- APoint node=null;
- double[] normalized=new double[3];
- double distance=0.0;
-
- for(i=0; i<limit; i++) {
- normalized=clipPolygon.get_normalized(i);
- node=clipPolygon.getNode(i);
- distance=clipPolygon.get_distance(i);
- if(normalized!=null&&node!=null&& !Double.isNaN(distance))
- s_h_clip_poly(normalized, node, distance);
- }
-
- return(nodes.size()>0);
- }
-
- public void s_h_clip_poly(double[] normalized, APoint node, double distance) {
- int degree=nodes.size();
- APoint s=null, p=null, q=null;
- boolean s_inside, p_inside;
- double tls=0.0;
- Vector keptNodes=new Vector();
-
- if(degree>0&&nodes.elementAt(degree-1) instanceof APoint)
- s=(APoint)nodes.elementAt(degree-1);
-
- for(int i=0; i<nodes.size(); i++) {
- if(nodes.elementAt(i) instanceof APoint) {
- p=(APoint)nodes.elementAt(i);
- s_inside=s.inside(normalized, distance);
- p_inside=p.inside(normalized, distance);
- if(s_inside)
- if(!p_inside) {
- tls=s.calculate_tls(p, node, normalized);
- q=s.point_of_intersection(p, tls);
- keptNodes.addElement(q);
- } else
- keptNodes.addElement(p);
- else if(p_inside) {
- tls=s.calculate_tls(p, node, normalized);
- q=s.point_of_intersection(p, tls);
- keptNodes.addElement(q);
- keptNodes.addElement(p);
- }
- }
- s=p;
- }
- nodes=keptNodes;
- }
-
- public double[][] getPolygon() {
- int nrPoints=nodes.size();
- double[][] coord=new double[nrPoints][nrPoints];
-
- if(nrPoints>0)
- for(int i=0; i<nrPoints; i++) {
- APoint aPoint=getNode(i);
-
- if(aPoint!=null) {
- coord[0][i]=aPoint.x;
- coord[1][i]=aPoint.y;
- }
- }
- return coord;
- }
-
- public double[] getX() {
- int nrPoints=nodes.size();
- double[] coord=new double[nrPoints];
-
- if(nrPoints>0)
- for(int i=0; i<nrPoints; i++) {
- APoint aPoint=getNode(i);
-
- if(aPoint!=null)
- coord[i]=aPoint.x;
- }
- return coord;
- }
-
- public double[] getY() {
- int nrPoints=nodes.size();
- double[] coord=new double[nrPoints];
-
- if(nrPoints>0)
- for(int i=0; i<nrPoints; i++) {
- APoint aPoint=getNode(i);
-
- if(aPoint!=null)
- coord[i]=aPoint.y;
- }
- return coord;
- }
-
- public String toString() {
- StringBuilder s = new StringBuilder();
- int limit=nodes.size();
-
- s.append("x:{ ");
- for(int i=0; i<limit; i++) {
- s.append(((APoint)nodes.elementAt(i)).x);
- s.append(" :: ");
- }
- s.append(" }\ny:{ ");
- for(int i=0; i<limit; i++) {
- s.append(((APoint)nodes.elementAt(i)).y);
- s.append(" :: ");
- }
- return s.toString();
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/utils/AUtilities.java b/graphics/AtlantisJava/src/atlantis/utils/AUtilities.java
deleted file mode 100755
index 0c01e84f099..00000000000
--- a/graphics/AtlantisJava/src/atlantis/utils/AUtilities.java
+++ /dev/null
@@ -1,243 +0,0 @@
-package atlantis.utils;
-
-import java.io.FileNotFoundException;
-import java.io.FileInputStream;
-import java.io.InputStream;
-import java.io.File;
-import java.util.Date;
-import java.text.SimpleDateFormat;
-import java.awt.Graphics2D;
-import java.awt.Image;
-import java.awt.RenderingHints;
-import java.awt.event.MouseEvent;
-import java.awt.image.BufferedImage;
-import javax.swing.SwingUtilities;
-import javax.swing.ImageIcon;
-
-
-/**
- *
- * @author Gary Taylor, Zdenek Maxa
- */
-public class AUtilities
-{
- public static ALogger logger = ALogger.getLogger(AUtilities.class);
-
- private static final String dateFormat = "yyyy-MM-dd-HH-mm-ss";
-
-
- private AUtilities()
- {
- } // AUtilities() -------------------------------------------------------
-
-
- /**
- * Allow Ctrl+click as alternative to right-click so can use single-button
- * mouse on the Mac computer
- */
- public static boolean isRightMouseButton(MouseEvent e)
- {
- return SwingUtilities.isRightMouseButton(e) ||
- e.isControlDown();
-
- } // isRightMouseButton() -----------------------------------------------
-
- /**
- * Returns string with current data and time formatted according to
- * dateFomat attribute (currently: yyyy-MM-dd-HH-mm-ss)
- * @return String
- */
- public static String getDateTimeString()
- {
- String r = null;
- Date d = new Date(System.currentTimeMillis());
- SimpleDateFormat sdf = new SimpleDateFormat(dateFormat);
- r = sdf.format(d);
- return r;
-
- } // getDateTimeString() ------------------------------------------------
-
-
- /**
- * Returns last directory and file name from fullPath which is assumed to be
- * some path to a file. This method assumes it is used when a file is retrieved
- * from a .jar file.
- * @param fullPath
- */
- private static String getLastDirectoryAndFileName(String fullPath)
- {
- // if running on Windows, Atlantis.fileSep is '\', but accessing a .jar
- // file uses '/' as file separator - so replace all '\' occurrences
- // '/' (troubles when running via webstart (from jar file (/ as file
- // separator) on windows (uses \ as file separator))
- logger.debug("Trying to extract last directory and filename, input: " + fullPath);
- char[] charArray = fullPath.replaceAll("\\\\", "/").toCharArray();
- int sepOccurence = 0; // file separator (e.g. '/') occurrence counter
- int i;
- for(i = fullPath.length() - 1; i > 0; i--)
- {
- // compare only to '/', even on Windows '\' was already replaced
- // by '/'
- if(charArray[i] == '/')
- {
- sepOccurence++;
- }
- if(sepOccurence == 2)
- {
- // i variable now holds second file separator occurrence from end
- break;
- }
- }
-
- String relPath = null;
-
- if(sepOccurence == 0)
- {
- logger.warn("No file separator found in the file path: " + fullPath);
- relPath = fullPath;
- }
- else if(i == 0)
- {
- logger.warn("The path looks like relative path already, using: " +
- fullPath);
- relPath = fullPath;
- }
- else
- {
- relPath = new String(charArray).substring(i + 1);
- logger.debug("Last directory and filename result: " + relPath);
- }
-
- return relPath;
-
- } // getLastDirectoryAndFileName() --------------------------------------
-
-
-
- /**
- * Reads either locally (full path in fileName) or from atlantis.jar. Using
- * this method for reading files makes Atlantis running either with runtime
- * distribution directories (e.g. img, geometry, etc) or from .jar file
- * (everything including runtime directories packed in a jar file)
- * transparent. Having everything in .jar files is a requirement for
- * running as Java WebStart.
- * This method is used for files (text, xml) as InputStream.
- * @param fileName - full path
- */
- public static InputStream getFileAsStream(String fileName) throws AAtlantisException
- {
- InputStream is = null;
-
- if(fileName == null || "".equals(fileName))
- {
- String m = "Input parameter fileName is null or empty";
- logger.debug(m);
- throw new AAtlantisException(m);
- }
-
- try
- {
- logger.debug("Trying to access file: " + fileName + " ...");
- is = new FileInputStream(fileName);
- logger.debug("Reading " + fileName + " successful.");
- }
- catch(FileNotFoundException fnfe)
- {
- logger.warn(fileName + " not found, trying atlantis.jar ... ");
-
- // need to get file name and the last directory from the full path
- String relPath = getLastDirectoryAndFileName(fileName);
-
- ClassLoader cl = AUtilities.class.getClassLoader();
- is = cl.getResourceAsStream(relPath);
- if(is == null)
- {
- String m = fileName + " doesn't exist, reading " + relPath +
- " from atlantis.jar failed.";
- logger.error(m);
- throw new AAtlantisException(m);
- }
- logger.debug(fileName + " reading from atlantis.jar successful.");
- }
-
- return is;
-
- } // getFileAsStream() --------------------------------------------------
-
-
-
- /**
- * Reads either locally (full path in fileName) or from atlantis.jar. Using
- * this method for reading files makes Atlantis running either with runtime
- * distribution directories (e.g. img, geometry, etc) or from .jar file
- * (everything including runtime directories packed in a jar file)
- * transparent. Having everything in .jar files is a requirement for
- * running as Java WebStart.
- * This method is used for reading images.
- * @param fileName - full path
- */
- public static ImageIcon getFileAsImageIcon(String fileName)
- {
-
- ImageIcon ii = null;
-
- if(fileName == null || "".equals(fileName))
- {
- String m = "Input parameter fileName is null or empty, can't get ImageIcon";
- logger.debug(m);
- return null;
- }
-
- File test = new File(fileName);
- if(test.exists() && test.canRead())
- {
- ii = new ImageIcon(fileName);
- logger.debug("Reading " + fileName + " successful.");
- }
- else
- {
- logger.debug(fileName + " not found, trying atlantis.jar ... ");
-
- // need to get file name and the last directory from the full path
- String relPath = getLastDirectoryAndFileName(fileName);
-
- ClassLoader cl = AUtilities.class.getClassLoader();
- try {
- ii = new ImageIcon(cl.getResource(relPath));
- logger.debug(fileName + " reading from atlantis.jar successful.");
- }
- catch (Throwable e) {
- String m = "Failed to read "+ fileName + " from " + relPath +
- " in atlantis.jar";
- logger.debug(m);
- }
- }
-
- return ii;
-
- } // getFileAsImageIcon() -----------------------------------------------
-
- // Function used to rescale an Image and return an ImageIcon
- //
- public static ImageIcon scale(Image src, double scale, boolean antiAlias) {
- int w = (int)(scale*src.getWidth(null));
- int h = (int)(scale*src.getHeight(null));
- int type = BufferedImage.TYPE_INT_ARGB;
- BufferedImage dst = new BufferedImage(w, h, type);
- Graphics2D g2 = dst.createGraphics();
- if(antiAlias) // Render png High Quality when AntiAliasing selected
- {
- g2.setRenderingHint(RenderingHints.KEY_INTERPOLATION, RenderingHints.VALUE_INTERPOLATION_BICUBIC);
- g2.setRenderingHint(RenderingHints.KEY_RENDERING, RenderingHints.VALUE_RENDER_QUALITY);
- }
- else // else render it for speed.
- {
- g2.setRenderingHint(RenderingHints.KEY_INTERPOLATION, RenderingHints.VALUE_INTERPOLATION_NEAREST_NEIGHBOR);
- g2.setRenderingHint(RenderingHints.KEY_RENDERING, RenderingHints.VALUE_RENDER_SPEED);
- }
- g2.drawImage(src, 0, 0, w, h, null);
- g2.dispose();
- return new ImageIcon(dst);
- } // ------- scale()
-
-} // class AUtilities =======================================================
diff --git a/graphics/AtlantisJava/src/atlantis/utils/AVector.java b/graphics/AtlantisJava/src/atlantis/utils/AVector.java
deleted file mode 100755
index 2d3f7b8c976..00000000000
--- a/graphics/AtlantisJava/src/atlantis/utils/AVector.java
+++ /dev/null
@@ -1,84 +0,0 @@
-package atlantis.utils;
-
-
-import java.awt.geom.Point2D;
-
-
-/**
- * Provides basic 2D vector operations.
- */
-
-public class AVector {
-
- public double dx, dy;
-
- public AVector(double dx, double dy) {
- set(dx, dy);
- }
-
- public AVector(double x1, double y1, double x2, double y2) {
- set(x2-x1, y2-y1);
- }
-
- public AVector(Point2D p1, Point2D p2) {
- this(p1.getX(), p1.getY(), p2.getX(), p2.getY());
- }
-
- public AVector set(double dx, double dy) {
- this.dx=dx;
- this.dy=dy;
- return this;
- }
-
- public AVector getUnitary() {
- double r=Math.sqrt(dx*dx+dy*dy);
-
- return new AVector(dx/r, dy/r);
- }
-
- public AVector makeUnitary() {
- double r=Math.sqrt(dx*dx+dy*dy);
-
- dx/=r;
- dy/=r;
- return this;
- }
-
- public AVector rotate(double alpha) {
- double sin=Math.sin(alpha);
- double cos=Math.cos(alpha);
- double dx_prime=dx*cos-dy*sin;
- double dy_prime=dx*sin+dy*cos;
-
- dx=dx_prime;
- dy=dy_prime;
- return this;
- }
-
- public AVector scale(double factor) {
- dx*=factor;
- dy*=factor;
- return this;
- }
-
- public AVector invert() {
- dx*=-1;
- dy*=-1;
- return this;
- }
-
- public double modulus() {
- return Math.sqrt(dx*dx+dy*dy);
- }
-
- public AVector add(AVector v) {
- dx+=v.dx;
- dy+=v.dy;
- return this;
- }
-
- public String toString() {
- return "AVector[dx="+dx+", dy="+dy+"]";
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/utils/package.html b/graphics/AtlantisJava/src/atlantis/utils/package.html
deleted file mode 100644
index ba4e3fa430d..00000000000
--- a/graphics/AtlantisJava/src/atlantis/utils/package.html
+++ /dev/null
@@ -1,6 +0,0 @@
-<html>
-<head></head>
-<body>
-<p>Helper classes.</p>
-</body>
-</html>
diff --git a/graphics/AtlantisJava/src/atlantis/utils/xml/AArrayParser.java b/graphics/AtlantisJava/src/atlantis/utils/xml/AArrayParser.java
deleted file mode 100755
index 027bd7e0f74..00000000000
--- a/graphics/AtlantisJava/src/atlantis/utils/xml/AArrayParser.java
+++ /dev/null
@@ -1,36 +0,0 @@
-package atlantis.utils.xml;
-
-/**
- * The superclass of Integer and Float array parsers used e.g. in parseing
- * arrays stored in xml files
- */
-
-public abstract class AArrayParser
-{
- protected int count;
- protected int state;
- protected int sign;
- protected boolean finished;
-
- protected static final char space = ' ';
- protected static final char cariage = '\n';
- protected static final char zero = '0';
- protected static final char nine = '9';
- protected static final char minus = '-';
- protected static final char plus = '+';
- protected static final char dot = '.';
- protected static final char smallExp = 'e';
- protected static final char bigExp = 'E';
-
- public abstract void parse(char[] ch, int start, int end);
-
- public abstract Object getArray();
-
- /**
- * @return Returns the count.
- */
- public int getCount()
- {
- return count;
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/utils/xml/AFloatArrayParser.java b/graphics/AtlantisJava/src/atlantis/utils/xml/AFloatArrayParser.java
deleted file mode 100755
index 413eb6ccc87..00000000000
--- a/graphics/AtlantisJava/src/atlantis/utils/xml/AFloatArrayParser.java
+++ /dev/null
@@ -1,255 +0,0 @@
-package atlantis.utils.xml;
-
-/**
- * The parser used to generate arrays of float values.
- */
-
-public class AFloatArrayParser extends AArrayParser
-{
- private final static int SKIPPING_BLANKS = 0;
- private final static int CHECKING_MINUS = 1;
- private final static int CHECKING_INF1 = 2;
- private final static int CHECKING_INF2 = 3;
- private final static int CHECKING_INF3 = 4;
- private final static int READING_INT = 5;
- private final static int CHECKING_DOT = 6;
- private final static int READING_FLOAT = 7;
- private final static int CHECKING_EXP = 8;
- private final static int CHECKING_EXP_SIGN = 9;
- private final static int READING_EXP = 10;
- private final static int FINISHING = 11;
- private final static int IGNORE = 12;
-
- private static double[] powers = new double[200 * 2];
- private float[] array;
- private float number = 0;
- private int floatDigits = 0;
- private int exp = 0;
- private int expSign = 1;
- private boolean isInf = false;
-
- static
- {
- for(int i = 0; i < 2 * 200; i++)
- powers[i] = Math.pow(10, i - 200);
- }
-
- public AFloatArrayParser(int size)
- {
- array = new float[size];
- count = 0;
- if(size == 0)
- state = IGNORE;
- else
- state = SKIPPING_BLANKS;
- sign = 1;
- }
-
- public void parse(char[] ch, int start, int length)
- {
- if(state == IGNORE)
- {
- finished = true;
- return;
- }
-
- int end = start + length;
- nextChar: for(int i = start; i < end; i++)
- {
- char c = ch[i];
- thisChar: while(true)
- {
-
- switch(state)
- {
-
- case SKIPPING_BLANKS:
- if(c == space || c == cariage)
- continue nextChar;
- else
- {
- finished = false;
- state++;
- continue thisChar;
- }
-
- case CHECKING_MINUS:
- if(c == minus)
- {
- sign = -1;
- state++;
- continue nextChar;
- }
- else
- {
- state++;
- continue thisChar;
- }
-
- case CHECKING_INF1:
- if(c == 'i' || c == 'I')
- {
- state++;
- continue nextChar;
- }
- else
- {
- state = READING_INT;
- continue thisChar;
- }
-
- case CHECKING_INF2:
- if(c == 'n' || c == 'N')
- {
- state++;
- continue nextChar;
- }
- else
- {
- state = FINISHING;
- continue thisChar;
- }
-
- case CHECKING_INF3:
- if(c == 'f' || c == 'F')
- {
- state = FINISHING;
- isInf = true;
- continue nextChar;
- }
- else
- {
- state = FINISHING;
- continue thisChar;
- }
-
- case READING_INT:
- if(c >= zero && c <= nine)
- {
- number = number * 10 + c - zero;
- continue nextChar;
- }
- else
- {
- state++;
- continue thisChar;
- }
-
- case CHECKING_DOT:
- if(c == dot)
- {
- state++;
- continue nextChar;
- }
- else
- {
- state++;
- continue thisChar;
- }
-
- case READING_FLOAT:
- if(c >= zero && c <= nine)
- {
- number = number * 10 + c - zero;
- floatDigits++;
- continue nextChar;
- }
- else
- {
- state++;
- continue thisChar;
- }
-
- case CHECKING_EXP:
- if(c == smallExp || c == bigExp)
- {
- state++;
- continue nextChar;
- }
- else
- {
- state = FINISHING;
- continue thisChar;
- }
-
- case CHECKING_EXP_SIGN:
- if(c == minus)
- {
- expSign = -1;
- state++;
- continue nextChar;
- }
- if(c == plus)
- {
- expSign = +1;
- state++;
- continue nextChar;
- }
- else
- {
- state++;
- continue thisChar;
- }
-
- case READING_EXP:
- if(c >= zero && c <= nine)
- {
- exp = exp * 10 + c - zero;
- continue nextChar;
- }
- else
- {
- state++;
- continue thisChar;
- }
-
- case FINISHING:
- if(c == space || c == cariage)
- {
- try
- {
- if(isInf)
- {
- if(sign == 1)
- array[count] = Float.POSITIVE_INFINITY;
- else
- array[count] = Float.NEGATIVE_INFINITY;
- isInf = false;
- }
- else
- array[count] = (float) (number * sign * powers[expSign * exp - floatDigits + 200]);
- }
- catch(IndexOutOfBoundsException e)
- {
- // the real number of data is more than the
- // expected number of data
- throw new IndexOutOfBoundsException("more");
- }
- state = SKIPPING_BLANKS;
- sign = 1;
- exp = 0;
- expSign = 1;
- floatDigits = 0;
- number = 0;
- count++;
- finished = true;
- continue nextChar;
- }
- else
- {
- throw new NumberFormatException("" + c);
- }
- }
- } // while true
- } // for
- }
-
- public Object getArray()
- {
- if(!finished)
- array[count] = (float) (number * sign * powers[expSign * exp
- - floatDigits + 200]);
- return array;
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/utils/xml/AIntArrayParser.java b/graphics/AtlantisJava/src/atlantis/utils/xml/AIntArrayParser.java
deleted file mode 100755
index 74ed17a767f..00000000000
--- a/graphics/AtlantisJava/src/atlantis/utils/xml/AIntArrayParser.java
+++ /dev/null
@@ -1,126 +0,0 @@
-package atlantis.utils.xml;
-
-/**
- * The parser used to generate arrays of integer values.
- */
-
-public class AIntArrayParser extends AArrayParser
-{
- private final static int SKIPPING_BLANKS = 0;
- private final static int CHECKING_MINUS = 1;
- private final static int READING_INT = 2;
- private final static int FINISHING = 3;
- private final static int IGNORE = 4;
-
- private int[] array;
- private long number = 0;
-
- public AIntArrayParser(int size)
- {
- array = new int[size];
- count = 0;
- if(size == 0)
- state = IGNORE;
- else
- state = SKIPPING_BLANKS;
- sign = 1;
- }
-
- public void parse(char[] ch, int start, int length)
- {
- if(state == IGNORE)
- {
- finished = true;
- return;
- }
-
- int end = start + length;
- nextChar: for(int i = start; i < end; i++)
- {
- char c = ch[i];
- thisChar: while(true)
- {
- switch(state)
- {
- case READING_INT:
- if(c >= zero && c <= nine)
- {
- number = number * 10 + c - zero;
- continue nextChar;
- }
- else
- {
- state++;
- continue thisChar;
- }
- case SKIPPING_BLANKS:
- if(c == space || c == cariage)
- continue nextChar;
- else
- {
- finished = false;
- state++;
- continue thisChar;
- }
- case CHECKING_MINUS:
- if(c == minus)
- {
- sign = -1;
- state++;
- continue nextChar;
- }
- else
- {
- state++;
- continue thisChar;
- }
- case FINISHING:
- if(c == space || c == cariage)
- {
- try
- {
- // This is a hack to make 64-bit identifiers work without
- // using long internally. It works because for most
- // identifiers only the most significant 32 bits are
- // actually used. Proper support for 64-bit integer
- // identifiers needs to be implemented asap (#618).
- // -- EJ 09/2012
- if (number > Integer.MAX_VALUE && number >> 32 != 0) {
- number = number >> 32;
- }
- array[count] = (int)number * sign;
- }
- catch(IndexOutOfBoundsException e)
- {
- // the real number of data is more than the
- // expected number of data
- throw new IndexOutOfBoundsException("more");
- }
- number = 0;
- count++;
- sign = 1;
- state = SKIPPING_BLANKS;
- finished = true;
- continue nextChar;
- }
- else
- {
- throw new NumberFormatException("" + c);
- }
- }
- } // while true
- } // for
- }
-
- public Object getArray()
- {
- if(!finished) {
- if (number > Integer.MAX_VALUE) {
- number = number >> 32;
- }
- array[count] = (int)number * sign;
- }
- return array;
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/utils/xml/AStringArrayParser.java b/graphics/AtlantisJava/src/atlantis/utils/xml/AStringArrayParser.java
deleted file mode 100755
index 1029bbb4a6c..00000000000
--- a/graphics/AtlantisJava/src/atlantis/utils/xml/AStringArrayParser.java
+++ /dev/null
@@ -1,103 +0,0 @@
-package atlantis.utils.xml;
-
-/**
- * The parser used to generate arrays of integer values.
- */
-
-public class AStringArrayParser extends AArrayParser
-{
- private final static int SKIPPING_BLANKS = 0;
- private final static int READING_STRING = 1;
- private final static int FINISHING = 2;
- private final static int IGNORE = 3;
-
- StringBuffer buffer;
- private String[] array;
-
- public AStringArrayParser(int size)
- {
- array = new String[size];
- buffer = new StringBuffer(20);
- count = 0;
- if(size == 0)
- state = IGNORE;
- else
- state = SKIPPING_BLANKS;
- }
-
- public void parse(char[] ch, int start, int length)
- {
- if(state == IGNORE)
- {
- finished = true;
- return;
- }
-
- int end = start + length;
- nextChar: for(int i = start; i < end; i++)
- {
- char c = ch[i];
- thisChar: while(true)
- {
-
- switch(state)
- {
-
- case READING_STRING:
- if(!(c == space || c == cariage))
- {
- buffer.append(c);
- continue nextChar;
- }
- else
- {
- state++;
- continue thisChar;
- }
-
- case SKIPPING_BLANKS:
- if(c == space || c == cariage)
- continue nextChar;
- else
- {
- finished = false;
- state++;
- continue thisChar;
- }
-
- case FINISHING:
- if(c == space || c == cariage)
- {
- try
- {
- array[count++] = new String(buffer);
- }
- catch(IndexOutOfBoundsException e)
- {
- // the real number of data is more than the
- // expected number of data
- throw new IndexOutOfBoundsException("more");
- }
-
- buffer.setLength(0);
- state = SKIPPING_BLANKS;
- finished = true;
- continue nextChar;
- }
- else
- {
- throw new NumberFormatException("" + c);
- }
- }
- } // while true
- } // for
- }
-
- public Object getArray()
- {
- if(!finished && array.length > 0)
- array[count] = new String(buffer);
- return array;
- }
-
-}
diff --git a/graphics/AtlantisJava/src/atlantis/utils/xml/AXMLEntityResolver.java b/graphics/AtlantisJava/src/atlantis/utils/xml/AXMLEntityResolver.java
deleted file mode 100644
index 0b7a7274a48..00000000000
--- a/graphics/AtlantisJava/src/atlantis/utils/xml/AXMLEntityResolver.java
+++ /dev/null
@@ -1,40 +0,0 @@
-package atlantis.utils.xml;
-
-import atlantis.utils.AAtlantisException;
-import atlantis.utils.ALogger;
-import atlantis.utils.AUtilities;
-import java.io.IOException;
-import java.io.InputStream;
-import org.xml.sax.EntityResolver;
-import org.xml.sax.InputSource;
-import org.xml.sax.SAXException;
-
-/**
- * Entity resolver, used for relaying XML file includes to AUtilities.
- * AUtilities.getFileAsStream() handles including files that are located in
- * the webstart jar file.
- *
- * @author Eric Jansen
- */
-public class AXMLEntityResolver implements EntityResolver {
-
- public static ALogger logger = ALogger.getLogger(AXMLEntityResolver.class);
-
- @Override
- public InputSource resolveEntity(String publicId, String systemId) throws SAXException, IOException {
-
- InputStream input = null;
- try {
- if (systemId.startsWith("file://")) {
- systemId = systemId.substring(7);
- }
- input = AUtilities.getFileAsStream(systemId);
- } catch (AAtlantisException e) {
-
- logger.error("Could not resolve external entity"
- +" '"+systemId+"': " + e.getMessage());
- }
-
- return new InputSource(input);
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/utils/xml/AXMLErrorHandler.java b/graphics/AtlantisJava/src/atlantis/utils/xml/AXMLErrorHandler.java
deleted file mode 100755
index fddab8ec5db..00000000000
--- a/graphics/AtlantisJava/src/atlantis/utils/xml/AXMLErrorHandler.java
+++ /dev/null
@@ -1,127 +0,0 @@
-package atlantis.utils.xml;
-
-import org.xml.sax.ErrorHandler;
-import org.xml.sax.SAXParseException;
-
-import atlantis.utils.ALogger;
-
-/**
- * Used in the XML processing code to catch and store the possible exceptions and errors.
- */
-public class AXMLErrorHandler implements ErrorHandler {
-
- //the logger
- private final ALogger logger = ALogger.getLogger(AXMLErrorHandler.class);
- /**
- * Thee different error states encountered in XML parsing
- */
- public enum ErrorState {
-
- NO_ERROR, // no error
- IGNORED_DATA, // the given data will be ignored
- UNKNOWN_TAG, // unknown tag
- INVALID_DATA, // the given data is not valid (e.g. string instead of int)
- OTHER_ERROR, // some other error
- FATAL_ERROR // some fatal error - event has to be aborted
- }
-
- //Store the current error state
- private ErrorState errorState = ErrorState.NO_ERROR;
- //Store the exception causing the error
- private Throwable cause = null;
-
- /**
- * @return the current error state of the parser
- */
- public ErrorState getErrorState() {
- return errorState;
- }
-
- /**
- * @return the cause of the last error
- */
- public Throwable getErrorCause(){
- return cause;
- }
-
- /**
- * Set the error state of the parser
- * @param errorState The errorState to set.
- * @param cause the cause of the error
- */
- public void setError(ErrorState errorState, Throwable cause) {
-
- //check that the user had actually given a cause for all errors
- if (cause == null && (errorState != ErrorState.NO_ERROR ))
- throw new IllegalArgumentException("Cause can not be NULL");
-
- this.errorState = errorState;
-
- //force cause null for NO_ERROR
- if (errorState == ErrorState.NO_ERROR)
- this.cause = null;
- else
- this.cause = cause;
- }
-
- /**
- * Handles all errors occurding during parsing
- * @param exception the SAXParseException causing the error
- */
- public void error(SAXParseException exception) {
-
- //Only keep the first error, ignore subsequents
- if ( getErrorState() != ErrorState.NO_ERROR ) return;
-
- //Decode error from exception message (is there no better way?!
- String errorMessage = exception.getMessage();
-
- //Check for undeclared elements
- if ( errorMessage.startsWith("Element type") &&
- errorMessage.indexOf("must be declared") >= 0) {
- // an undeclared element is found in event file
- // errorMessage - Element type "elementName" must be declared.
- setError(ErrorState.UNKNOWN_TAG,exception);
- return;
-
- } else if (errorMessage.startsWith("The content of element type") &&
- errorMessage.indexOf("must match") >= 0) {
- /* errorMessage - The content of element type "elementName" must
- match ... -
- this error will occur if any undeclared element is found.
- */
- setError(ErrorState.INVALID_DATA,exception);
- return;
- } else {
- // an untreated error (e.g. undeclared attributes, etc.)
- // supposed to be corrected by modifying event.dtd or retrievers
- logger.error("Parsing XML in line " + exception.getLineNumber() + ": " + errorMessage);
- setError(ErrorState.OTHER_ERROR,exception);
- return;
- }
-
- }
-
- /**
- * Handle warning exceptions
- * @param exception the SAX exception
- */
- public void warning(SAXParseException exception) {
- //Write a warning output, otherwise ignore
- logger.warn("Parsing XML at position " + exception.getLineNumber() + ", " + exception.getColumnNumber() + " :: " + exception.getMessage());
- }
-
- /**
- * Handle fatal exceptions
- * @param exception the SAX exception
- */
- public void fatalError(SAXParseException exception) {
- //Only fatal exceptions are handled by global exception handler
- String m = "Fatal error while parsing XML, line: " +
- exception.getLineNumber() + " column: " +
- exception.getColumnNumber() + " reason: " +
- exception.getMessage();
- logger.fatal(m);
- System.exit(1);
- }
-}
diff --git a/graphics/AtlantisJava/src/atlantis/utils/xml/AXMLUtils.java b/graphics/AtlantisJava/src/atlantis/utils/xml/AXMLUtils.java
deleted file mode 100755
index c745a476690..00000000000
--- a/graphics/AtlantisJava/src/atlantis/utils/xml/AXMLUtils.java
+++ /dev/null
@@ -1,38 +0,0 @@
-package atlantis.utils.xml;
-
-
-import org.w3c.dom.NamedNodeMap;
-import org.w3c.dom.Node;
-import org.w3c.dom.NodeList;
-
-
-/**
- * Provides some basic XML utilities which are not present in the XML library.
- */
-public class AXMLUtils
-{
- public static Node getChild(Node node, String name)
- {
- NodeList childs = node.getChildNodes();
-
- for (int i = 0; i < childs.getLength(); i++)
- {
- Node child = childs.item(i);
-
- if (child.getNodeType() == Node.ELEMENT_NODE)
- {
- if (child.getNodeName().equals(name))
- return child;
- }
- }
- return null;
- }
-
- public static String tryAttribut(NamedNodeMap attributes, String attName)
- {
- Node node = attributes.getNamedItem(attName);
-
- return (node != null) ? node.getNodeValue() : null;
- }
-
-}
diff --git a/graphics/AtlantisJava/src/overview.html b/graphics/AtlantisJava/src/overview.html
deleted file mode 100644
index ebe0e3f52e9..00000000000
--- a/graphics/AtlantisJava/src/overview.html
+++ /dev/null
@@ -1,25 +0,0 @@
-<html>
-<head></head>
-<body>
-
-<p>Atlantis is an event display for the ATLAS experiment at
-CERN's Large Hadron Collider.</p>
-
-<p>The primary goals of the program are the visual investigation and
- the understanding of the physics of complete events. Secondary goals
- are to help develop reconstruction and analysis algorithms, to
- facilitate debugging during commisioning and to provided a tool for
- creating pictures and animations for publications, presentations and
- exhibitions.</p>
-
-<p>Atlantis is based on the ALEPH event display DALI.</p>
-
-<p>Atlantis is written entirely in Java. JiveXML (event converter) is
- a C++ interface between Atlantis and the Athena ATLAS offline SW
- framework.</p>
-
-<p>Atlantis event visualisation is a fast, interactive and intuitive
- application allowing study of complete ATLAS events.</p>
-
-</body>
-</html>
diff --git a/graphics/AtlantisJava/test/events/emptyEvent.xml b/graphics/AtlantisJava/test/events/emptyEvent.xml
deleted file mode 100644
index 575abcaba0b..00000000000
--- a/graphics/AtlantisJava/test/events/emptyEvent.xml
+++ /dev/null
@@ -1,6 +0,0 @@
-<?xml version="1.0"?>
-<?xml-stylesheet type="text/xsl" href="JiveXML_event.xsl"?>
-<?ATLAS Release: "dummy"?>
-<!DOCTYPE Event SYSTEM "event.dtd">
-<Event version="dummy" runNumber="1" eventNumber="1" lumiBlock="1" dateTime="" eventProperty="">
-</Event>
diff --git a/graphics/AtlantisJava/test/events/muonCollections.xml b/graphics/AtlantisJava/test/events/muonCollections.xml
deleted file mode 100644
index c9281c94d4d..00000000000
--- a/graphics/AtlantisJava/test/events/muonCollections.xml
+++ /dev/null
@@ -1,240 +0,0 @@
-<?xml version="1.0"?>
-<?xml-stylesheet type="text/xsl" href="JiveXML_event.xsl"?>
-<?ATLAS Release: "dummy"?>
-<!DOCTYPE Event SYSTEM "event.dtd">
-<Event version="dummy" runNumber="1" eventNumber="1" lumiBlock="1" dateTime="" eventProperty="">
-
-<!-- Test event with two muon track collections, ConvertedMBoyMuonSpectroOnlyTracks and ConvertedMBoyTracks,
- each containing two tracks. Edited down from JiveXML_105200_190249.xml. -->
-
-<Track count="2" storeGateKey="ConvertedMBoyMuonSpectroOnlyTracks">
-
-<barcode>
-0 0
-</barcode>
-<chi2>
-11.516 97.6254
-</chi2>
-<cotTheta>
--0.769442 1.26983
-</cotTheta>
-<covMatrix multiple="15">
-19219.9 -213.586 22.2079 -47.5008 0.526573 0.135968 0.532181 -0.384001 -0.00148101 0.00808431
--0.0402467 0.104992 0.000158801 -0.00114179 0.00470875 54908.6 11775 4453.41 -220.818 -39.2807
-1.26332 -73.45 -46.6243 0.226787 0.609096 -77.0102 42.0205 0.986568 -0.892189 6.4339
-
-</covMatrix>
-<d0>
-0 0
-</d0>
-<driftSign multiple="36">
-0 0 0 0 0 0 0 0 0 0
-0 0 0 0 0 0 0 0 0 0
-0 0 0 0 0 0 0 0 0 0
-0 0 0 0 0 0 0 0 0 0
-0 0 0 0 0 0 0 0 0 0
-0 0 0 0 0 0 0 0 0 0
-0 0 0 0 0 0 0 0 0 0
-0 0
-</driftSign>
-<hits multiple="36">
-2100232864 2100236992 2100241088 2100245216 2100249472 2100249504 2100253568 2100253600 2100257728 2100261824
-1730609632 1730613760 1730617856 1730621984 1730626336 1730626368 1730630432 1730630464 1730634592 1730638688
-1647284976 1647284336 1647286000 1647285364 1646731264 1646731296 1646739744 1646743840 1646747968 1646748000
-1646772976 1646772272 1646774000 1646773300 1680278368 1680282464 1680286592 1680295072 1680299168 1680303296
-1680315180 1680314384 1618215712 1618219840 1618219872 1618223968 1618228096 1618228128 2035453088 2035451984
-1802240896 1802245024 1802245056 1802249152 1802253280 1802257568 1802261664 1802261696 1802265824 1802269952
-1651803772 1651803200 1651769920 1651774016 1651778144 1651786592 1651790688 1651794816 1651823224 1651822616
-1651823644 1684836392
-</hits>
-<id>
-0 1
-</id>
-<isOutlier multiple="36">
-0 0 0 0 0 0 0 0 0 0
-0 0 0 0 0 1 0 0 0 0
-0 0 0 0 0 0 0 0 0 0
-0 0 0 0 0 0 0 0 0 0
-0 0 0 0 0 0 0 0 0 0
-0 0 0 0 0 0 0 0 0 0
-0 0 1 1 1 0 1 1 0 0
-0 0
-</isOutlier>
-<nPixHits>
-0 0
-</nPixHits>
-<nSCTHits>
-0 0
-</nSCTHits>
-<nTRTHits>
-0 0
-</nTRTHits>
-<numDoF>
-32 19
-</numDoF>
-<numHits>
-42 30
-</numHits>
-<numPolyline>
-42 30
-</numPolyline>
-<phi0>
--0.799777 2.98857
-</phi0>
-<polylineX multiple="36">
-362.371 364.017 365.663 367.309 381.139 382.149 382.786 383.796 385.443 387.09
-415.16 416.809 418.457 420.106 433.955 434.965 435.605 436.614 438.264 439.914
-471.844 471.844 473.398 473.398 485.111 486.12 509.514 511.168 512.822 513.83
-519.096 519.096 520.65 520.65 646.788 648.447 650.105 674.583 676.242 677.902
-682.726 682.726 -477.38 -479.179 -480.655 -482.454 -484.254 -485.73 -578.526 -578.526
--594.877 -597.01 -598.693 -600.825 -602.958 -620.809 -622.98 -624.767 -626.938 -630.896
--683.109 -683.109 -690.955 -693.412 -695.868 -731.028 -733.561 -736.094 -744.69 -744.69
--746.92 -979.54
-</polylineX>
-<polylineY multiple="36">
--372.719 -374.414 -376.108 -377.802 -392.037 -393.077 -393.732 -394.773 -396.468 -398.163
--427.056 -428.753 -430.451 -432.148 -446.404 -447.443 -448.102 -449.141 -450.839 -452.538
--485.408 -485.408 -487.007 -487.007 -499.066 -500.104 -524.189 -525.892 -527.594 -528.632
--534.054 -534.054 -535.654 -535.654 -665.539 -667.248 -668.956 -694.165 -695.875 -697.584
--702.553 -702.553 85.6237 85.754 85.8609 85.9913 86.1216 86.2285 88.9471 88.9471
-89.0356 89.0428 89.0486 89.0558 89.063 89.101 89.1036 89.1058 89.1083 89.1131
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diff --git a/graphics/AtlantisJava/test/events/muonCollections2.xml b/graphics/AtlantisJava/test/events/muonCollections2.xml
deleted file mode 100644
index 36c046de320..00000000000
--- a/graphics/AtlantisJava/test/events/muonCollections2.xml
+++ /dev/null
@@ -1,291 +0,0 @@
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- Edited down from JiveXML_105200_190249.xml.
--->
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--63.6294 -65.1968 -65.7157 -66.7733 -67.8442 -68.3677 -69.4429 -69.9738 -392.695 -394.508
--396.321 -398.134 -413.359 -414.471 -415.172 -416.284 -418.095 -419.907 -450.752 -452.562
--454.371 -456.181 -471.369 -473.178 -474.284 -476.092 -477.9 -512.837 -513.686 -527.328
--528.429 -553.945 -555.747 -557.549 -558.648 -565.23 -565.23 -702.927 -704.721 -706.516
--732.978 -734.772 -736.565 -741.784 -741.784 13.9188 18.9826 23.283 45.5935 45.7069
-54.7381 54.8523 64.7366 64.8514 72.7677 72.881 90.0479 91.6506 93.5526 94.3391
-95.1555 96.1413 96.9581 97.7443 100.175 101.778 103.581 105.185 107.087 107.87
-108.691 109.474 111.277 112.881 115.367 116.972 118.776 119.555 121.458 123.063
-124.868 126.473 128.87 133.055 134.661 625.142 627.308 629.076 631.238 633.399
-635.154 734.06 734.06 749.091 750.989 752.48 754.369 756.247 771.525 773.326
-774.801 776.589 779.835 819.417 819.417 824.967 826.666 828.354 851.354 852.938
-854.512 859.492 860.163 951.515 952.693 953.866 968.469 969.167 970.296 973.262
-973.717
-</polylineZ>
-<pt>
-59.5287 -3.02081
-</pt>
-<trackAuthor>
-1 1
-</trackAuthor>
-<z0>
-7.57297 7.58689
-</z0>
-</Track>
-
-</Event>
diff --git a/graphics/AtlantisJava/test/events/rvxEvent.xml b/graphics/AtlantisJava/test/events/rvxEvent.xml
deleted file mode 100644
index 21c7b7ca07e..00000000000
--- a/graphics/AtlantisJava/test/events/rvxEvent.xml
+++ /dev/null
@@ -1,44 +0,0 @@
-<?xml version="1.0"?>
-<?xml-stylesheet type="text/xsl" href="JiveXML_event.xsl"?>
-<?ATLAS Release: "dummy"?>
-<!DOCTYPE Event SYSTEM "event.dtd">
-<Event version="dummy" runNumber="1" eventNumber="1" lumiBlock="1" dateTime="" eventProperty="">
-
-<RVx count="4" storeGateKey="">
-
-<chi2>
-13.3549 13.3549 0.979663 0.979663
-</chi2>
-<covMatrix multiple="6">
-3145 1516.27 739.31 230.495 111.531 34.7901 3145 1516.27 739.31 230.495
-111.531 34.7901 0.0057955 0.00580698 0.0161258 0.00385126 0.0066793 0.172986 0.0057955 0.00580698
-0.0161258 0.00385126 0.0066793 0.172986
-</covMatrix>
-<numTracks>
-2 2 29 0
-</numTracks>
-<primVxCand>
-2 2 1 0
-</primVxCand>
-<sgkey>
-TrackParticleCandidate TrackParticleCandidate TrackParticleCandidate TrackParticleCandidate
-</sgkey>
-<tracks multiple="8.25">
-41 33 41 33 0 1 2 3 4 5
-6 7 8 9 10 11 12 13 14 15
-16 17 18 19 20 21 22 23 24 25
-26 27 28
-</tracks>
-<x>
-35.1249 35.1249 -0.0114638 -0.0114638
-</x>
-<y>
-18.3795 18.3795 0.0945006 0.0945006
-</y>
-<z>
-7.44812 7.44812 5.03257 5.03257
-</z>
-</RVx>
-
-
-</Event>
diff --git a/graphics/AtlantisJava/test/events/rvxInconsistentEvent.xml b/graphics/AtlantisJava/test/events/rvxInconsistentEvent.xml
deleted file mode 100644
index 3c745253f7c..00000000000
--- a/graphics/AtlantisJava/test/events/rvxInconsistentEvent.xml
+++ /dev/null
@@ -1,258 +0,0 @@
-<?xml version="1.0"?>
-<?xml-stylesheet type="text/xsl" href="JiveXML_event.xsl"?>
-<?ATLAS Release: "dummy"?>
-<!DOCTYPE Event SYSTEM "event.dtd">
-<Event version="dummy" runNumber="1" eventNumber="1" lumiBlock="1" dateTime="" eventProperty="">
-
-<RVx count="4" storeGateKey="">
-
-<chi2>
-13.3549 13.3549 0.979663 0.979663
-</chi2>
-<covMatrix multiple="6">
-3145 1516.27 739.31 230.495 111.531 34.7901 3145 1516.27 739.31 230.495
-111.531 34.7901 0.0057955 0.00580698 0.0161258 0.00385126 0.0066793 0.172986 0.0057955 0.00580698
-0.0161258 0.00385126 0.0066793 0.172986
-</covMatrix>
-<numTracks>
-2 2 29 0
-</numTracks>
-<primVxCand>
-2 2 1 0
-</primVxCand>
-<sgkey>
-TrackParticleCandidate TrackParticleCandidate TrackParticleCandidate TrackParticleCandidate
-</sgkey>
-<tracks multiple="544.5">
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 41 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 33
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 41 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 33 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 0 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 2 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 3 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 4 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 5
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 6 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 7 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
-8 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 9 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 10 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 11 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 12 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 13 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 14 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 15
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 16 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 17 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
-18 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 19 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 20 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 21 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 22 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 23 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 24 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 25
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 26 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 27 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
-28 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1 -1 -1
--1 -1 -1 -1 -1 -1 -1 -1
-</tracks>
-<x>
-35.1249 35.1249 -0.0114638 -0.0114638
-</x>
-<y>
-18.3795 18.3795 0.0945006 0.0945006
-</y>
-<z>
-7.44812 7.44812 5.03257 5.03257
-</z>
-</RVx>
-
-
-</Event>
diff --git a/graphics/AtlantisJava/test/src/atlantis/AtlantisHeadlessTestCase.java b/graphics/AtlantisJava/test/src/atlantis/AtlantisHeadlessTestCase.java
deleted file mode 100644
index 25f0a50137d..00000000000
--- a/graphics/AtlantisJava/test/src/atlantis/AtlantisHeadlessTestCase.java
+++ /dev/null
@@ -1,38 +0,0 @@
-package atlantis;
-
-
-import java.io.ByteArrayOutputStream;
-import java.io.PrintStream;
-
-import testutils.TeeOutputStream;
-import testutils.TestUtils;
-
-public class AtlantisHeadlessTestCase {
- ByteArrayOutputStream stdOutCopy = new ByteArrayOutputStream();
- protected String eventFileName = null; // Event file to give on the command line
-
- /** Start Atlantis in headless mode.
- */
- protected void startHeadlessMode() {
- // Redirect standard output to ByteArrayOutputStream as well as normal System.out
- TeeOutputStream teeOut = new TeeOutputStream(System.out,stdOutCopy);
- System.setOut(new PrintStream(teeOut));
-
- String atlantisHomeDir = Atlantis.getHomeDirectory();
- String testEventsDir = atlantisHomeDir+"/test/events";
- TestUtils.setPropertyIfNotSet("atlantis.test.events",testEventsDir);
-
- System.setProperty("java.awt.headless", "true");
- String[] args = {"--debug","DEBUG"};
- if (eventFileName!=null) {
- String[] newArgs = new String[args.length+1];
- for (int i=0; i<args.length; ++i) {
- newArgs[i] = args[i];
- }
- String eventsDirectory = System.getProperty("atlantis.test.events");
- newArgs[args.length] = eventsDirectory+"/"+eventFileName;
- args = newArgs;
- }
- Atlantis.main(args);
- }
-}
diff --git a/graphics/AtlantisJava/test/src/atlantis/HeadlessTest.java b/graphics/AtlantisJava/test/src/atlantis/HeadlessTest.java
deleted file mode 100644
index 759ea917c95..00000000000
--- a/graphics/AtlantisJava/test/src/atlantis/HeadlessTest.java
+++ /dev/null
@@ -1,21 +0,0 @@
-package atlantis;
-
-import org.fest.swing.timing.Condition;
-import org.junit.Test;
-import static org.fest.swing.timing.Pause.pause;
-import static org.fest.swing.timing.Timeout.timeout;
-
-public class HeadlessTest extends AtlantisHeadlessTestCase {
-
- @Test
- /** Start Atlantis in headless mode and make sure it doesn't crash part-way through.
- * Atlantis.initAtlantis catches all Exceptions so we check for "Atlantis Ready" in
- * the output console.
- */
- public void testHeadlessMode() {
- startHeadlessMode();
- pause(new Condition("output to contain \"Atlantis Ready\"") {
- public boolean test() {return stdOutCopy.toString().contains("Atlantis Ready");}
- },timeout(10000));
- }
-}
diff --git a/graphics/AtlantisJava/test/src/atlantis/InconsistentEventTest.java b/graphics/AtlantisJava/test/src/atlantis/InconsistentEventTest.java
deleted file mode 100644
index 5dbfffcd532..00000000000
--- a/graphics/AtlantisJava/test/src/atlantis/InconsistentEventTest.java
+++ /dev/null
@@ -1,36 +0,0 @@
-package atlantis;
-
-import static org.fest.swing.timing.Pause.pause;
-import static org.fest.swing.timing.Timeout.timeout;
-import static org.junit.Assert.*;
-
-import org.fest.swing.timing.Condition;
-import org.junit.Before;
-import org.junit.Test;
-
-/**
- * Test for bug#556, where a JiveXML file from Atlas release 17 causes an error
- * on startup when the file is given on the command line, though not when it is
- * opened after Atlantis has started.
- *
- * @author waugh
- *
- */
-public class InconsistentEventTest extends AtlantisHeadlessTestCase {
- @Before
- public void setUp() {
- eventFileName = "rel17vtxEvent.xml";
- System.setProperty("java.awt.headless", "true");
- startHeadlessMode();
- }
-
- @Test
- public void loadEvent() {
- pause(new Condition("output to contain \"Atlantis Ready\"") {
- public boolean test() {return stdOutCopy.toString().contains("Atlantis Ready");}
- },timeout(10000));
- String output = stdOutCopy.toString();
- assertTrue("Could not find or parse event ",output.contains("Parsing event"));
- assertFalse("Error reading event",output.contains("Can not read events"));
- }
-}
diff --git a/graphics/AtlantisJava/test/src/atlantis/NoTracksElementTest.java b/graphics/AtlantisJava/test/src/atlantis/NoTracksElementTest.java
deleted file mode 100644
index e761ec038c1..00000000000
--- a/graphics/AtlantisJava/test/src/atlantis/NoTracksElementTest.java
+++ /dev/null
@@ -1,36 +0,0 @@
-package atlantis;
-
-import static org.fest.swing.timing.Pause.pause;
-import static org.fest.swing.timing.Timeout.timeout;
-import static org.junit.Assert.*;
-
-import org.fest.swing.timing.Condition;
-import org.junit.Before;
-import org.junit.Test;
-
-/**
- * Test for bug#552, where a JiveXML file contains a "numTracks" element but
- * not a corresponding "tracks" element in the "RVx" section, as in some
- * of the events from the Hypatia masterclass.
- *
- * @author waugh
- *
- */
-public class NoTracksElementTest extends AtlantisHeadlessTestCase {
- @Before
- public void setUp() {
- eventFileName = "masterclassMuonEvents.zip";
- System.setProperty("java.awt.headless", "true");
- startHeadlessMode();
- }
-
- @Test
- public void loadEvent() {
- pause(new Condition("output to contain \"Atlantis Ready\"") {
- public boolean test() {return stdOutCopy.toString().contains("Atlantis Ready");}
- },timeout(10000));
- String output = stdOutCopy.toString();
- assertTrue("Could not find or parse event ",output.contains("Parsing event"));
- assertFalse("Error when constructing RVx",output.contains("Error when constructing RVx"));
- }
-}
diff --git a/graphics/AtlantisJava/test/src/atlantis/canvas/AScaleBorderTest.java b/graphics/AtlantisJava/test/src/atlantis/canvas/AScaleBorderTest.java
deleted file mode 100644
index 9ec8b4504a8..00000000000
--- a/graphics/AtlantisJava/test/src/atlantis/canvas/AScaleBorderTest.java
+++ /dev/null
@@ -1,19 +0,0 @@
-package atlantis.canvas;
-
-import static org.junit.Assert.*;
-
-import org.junit.Test;
-
-public class AScaleBorderTest {
-
- @Test
- public void testGetNumDecimalPlaces() {
- assertEquals("Wrong number of decimal places",0,AScaleBorder.getNumDecimalPlaces(1.0));
- assertEquals("Wrong number of decimal places",0,AScaleBorder.getNumDecimalPlaces(10.0));
- assertEquals("Wrong number of decimal places",1,AScaleBorder.getNumDecimalPlaces(0.5));
- assertEquals("Wrong number of decimal places",2,AScaleBorder.getNumDecimalPlaces(0.02));
- assertEquals("Wrong number of decimal places",0,AScaleBorder.getNumDecimalPlaces(-2.0));
- assertEquals("Wrong number of decimal places",1,AScaleBorder.getNumDecimalPlaces(-0.5));
- }
-
-}
diff --git a/graphics/AtlantisJava/test/src/atlantis/canvas/AScaleTest.java b/graphics/AtlantisJava/test/src/atlantis/canvas/AScaleTest.java
deleted file mode 100644
index 75b0e7c5882..00000000000
--- a/graphics/AtlantisJava/test/src/atlantis/canvas/AScaleTest.java
+++ /dev/null
@@ -1,104 +0,0 @@
-package atlantis.canvas;
-
-import static org.junit.Assert.*;
-
-import java.awt.geom.GeneralPath;
-import java.awt.geom.PathIterator;
-
-import org.junit.Assert;
-import org.junit.Test;
-
-public class AScaleTest {
-
- private static final double TOLERANCE = 0.00001;
-
- @Test
- public void testCalculateScale() {
- AScale scale = AScale.calculateScale(0, 10, 100, 3, 7, 0, 0, null);
- for (double label : scale.labelValues) {
- System.out.println("label = "+label);
- }
- for (double pos : scale.labelPositions) {
- System.out.println("position: "+pos);
- }
- System.out.println("Primary tick marks = " + scale.primaryTicks);
- GeneralPath primaryTicks = scale.primaryTicks;
- PathIterator iterPTicks = primaryTicks.getPathIterator(null);
- double[] coords = new double[2];
- int i = 0;
- while (!iterPTicks.isDone()) {
- int type = iterPTicks.currentSegment(coords);
- System.out.format("point %d has type %d%n",i,type);
- System.out.print("Coords: ");
- for (int j=0; j<2; ++j) {
- System.out.format(" %f", coords[j]);
- }
- System.out.println();
- i++;
- iterPTicks.next();
- }
- }
-
- @Test
- public void testRoundNumbers() {
- assertEquals("Wrong rounding", 5.0, AScale.getRoundNumber(9.0), TOLERANCE);
- assertEquals("Wrong rounding", -5.0, AScale.getRoundNumber(-9.0), TOLERANCE);
- assertEquals("Wrong rounding", 1.0, AScale.getRoundNumber(1.01), TOLERANCE);
- assertEquals("Wrong rounding", 500.0, AScale.getRoundNumber(999.0), TOLERANCE);
- }
-
- @Test
- public void testGetScaleIntervals() {
- double[] intervals, expectedValues;
- intervals = AScale.getScaleIntervals(-11.0,11.0);
- expectedValues = new double[] {10.0, 5.0, 1.0};
- assertArrayEquals("Wrong intervals", expectedValues, intervals, TOLERANCE);
- intervals = AScale.getScaleIntervals(-110.0,110.0);
- expectedValues = new double[] {100.0, 50.0, 10.0};
- assertArrayEquals("Wrong intervals", expectedValues, intervals, TOLERANCE);
- intervals = AScale.getScaleIntervals(-51.0,51.0);
- expectedValues = new double[] {50.0, 10.0, 5.0};
- assertArrayEquals("Wrong intervals", expectedValues, intervals, TOLERANCE);
- intervals = AScale.getScaleIntervals(-50.0,50.0);
- expectedValues = new double[] {50.0, 10.0, 5.0};
- assertArrayEquals("Wrong intervals", expectedValues, intervals, TOLERANCE);
- intervals = AScale.getScaleIntervals(-49.0,49.0);
- expectedValues = new double[] {40.0, 20.0, 5.0};
- assertArrayEquals("Wrong intervals", expectedValues, intervals, TOLERANCE);
- intervals = AScale.getScaleIntervals(1.0,49.0);
- expectedValues = new double[] {20.0, 10.0, 2.0};
- assertArrayEquals("Wrong intervals", expectedValues, intervals, TOLERANCE);
- intervals = AScale.getScaleIntervals(1.0,101.0);
- expectedValues = new double[] {50.0, 10.0, 5.0};
- assertArrayEquals("Wrong intervals", expectedValues, intervals, TOLERANCE);
- intervals = AScale.getScaleIntervals(-101.0,-1.0);
- expectedValues = new double[] {50.0, 10.0, 5.0};
- assertArrayEquals("Wrong intervals", expectedValues, intervals, TOLERANCE);
- intervals = AScale.getScaleIntervals(-9.5,9.5);
- expectedValues = new double[] {5.0, 1.0, 0.5};
- assertArrayEquals("Wrong intervals", expectedValues, intervals, TOLERANCE);
- intervals = AScale.getScaleIntervals(19.0,61.0);
- expectedValues = new double[] {20.0, 10.0, 2.0};
- assertArrayEquals("Wrong intervals", expectedValues, intervals, TOLERANCE);
- intervals = AScale.getScaleIntervals(0.0,0.0);
- assertNull("Intervals should be null for invalid input",intervals);
- }
-
- @Test
- public void testGetScaleValues() {
- double[] values;
- double[] expectedValues;
- values = AScale.getScaleValues(0.0, 1.0, 1.0);
- expectedValues = new double[] {0.0, 1.0};
- assertArrayEquals("Wrong scale values", expectedValues, values, TOLERANCE);
- values = AScale.getScaleValues(-0.1, 1.1, 1.0);
- expectedValues = new double[] {0.0, 1.0};
- assertArrayEquals("Wrong scale values", expectedValues, values, TOLERANCE);
- }
-
- @Test
- public void testInterpolate() {
- float result = AScale.interpolate(0.5, 10.0, 0.0, 1.0);
- assertEquals("Wrong interpolated value",5.0,result,TOLERANCE);
- }
-}
diff --git a/graphics/AtlantisJava/test/src/atlantis/canvas/AWindowTest.java b/graphics/AtlantisJava/test/src/atlantis/canvas/AWindowTest.java
deleted file mode 100644
index 076249c9993..00000000000
--- a/graphics/AtlantisJava/test/src/atlantis/canvas/AWindowTest.java
+++ /dev/null
@@ -1,14 +0,0 @@
-package atlantis.canvas;
-
-import static org.junit.Assert.*;
-
-import org.junit.Test;
-
-public class AWindowTest {
-
- @Test
- public void test() {
- AWindow window = new AWindow("dummyName","dummyProjection","dummyGroup",1);
- }
-
-}
diff --git a/graphics/AtlantisJava/test/src/atlantis/data/AHelixTest.java b/graphics/AtlantisJava/test/src/atlantis/data/AHelixTest.java
deleted file mode 100644
index b55aecf4db0..00000000000
--- a/graphics/AtlantisJava/test/src/atlantis/data/AHelixTest.java
+++ /dev/null
@@ -1,100 +0,0 @@
-/*
- * To change this license header, choose License Headers in Project Properties.
- * To change this template file, choose Tools | Templates
- * and open the template in the editor.
- */
-
-package atlantis.data;
-
-import atlantis.parameters.APar;
-import atlantis.utils.AMath;
-import java.util.ArrayList;
-import java.util.Arrays;
-import java.util.Collection;
-import org.junit.Before;
-import org.junit.Test;
-import static org.junit.Assert.*;
-import org.junit.runner.RunWith;
-import org.junit.runners.Parameterized;
-import org.junit.runners.Parameterized.Parameters;
-
-/**
- *
- * @author ejansen
- */
-
-@RunWith(Parameterized.class)
-public class AHelixTest {
-
- private static final double TOLERANCE = 0.001;
- private static final double CURVATURE = 100/0.6;
-
- private float d0, z0, phi0, cotanTheta, pt;
- private AHelix helix;
-
- public AHelixTest(float d0, float z0, float phi0, float cotanTheta, float pt) {
- this.d0 = d0;
- this.z0 = z0;
- this.phi0 = phi0;
- this.cotanTheta = cotanTheta;
- this.pt = pt;
- }
-
- @Parameters
- public static Collection helices() {
- Collection data = new ArrayList<Object[]>();
-
- for (int charge=-1; charge<=1; charge+=2) {
- for (float d0=-1.f; d0<=1.f; d0+=1.f) {
- for (float phi0=-(float)Math.PI; phi0<Math.PI; phi0+=Math.PI/4) {
- float pt = 20.f;
-
- data.add(new Object[] {d0, 0.0f, phi0, 0.5f, charge*pt});
- }
- }
- }
-
- return data;
- }
-
- @Before
- public void setUp() {
- APar.constructDummyForTesting();
- helix = new AHelix(d0, z0, (float)Math.toDegrees(phi0), cotanTheta, pt);
- }
-
- @Test
- public void testBackwardsCompatibility() {
- AOldHelix oldHelix = new AOldHelix(d0, z0, (float)Math.toDegrees(phi0), cotanTheta, pt);
-
- assertArrayEquals(oldHelix.getPar(), helix.getPar(), TOLERANCE);
- assertEquals(oldHelix.eta, helix.eta(), TOLERANCE);
- assertEquals(oldHelix.startPhi, helix.getAlphaMin(), TOLERANCE);
- assertEquals(oldHelix.rhoVertex, helix.getRhoVtx(), TOLERANCE);
- }
-
- @Test
- public void testD0() {
- // The alpha=0 point should be at distance d0
- double rho = helix.getRho(0);
- assertEquals(Math.abs(d0), rho, TOLERANCE);
- }
-
- @Test
- public void testCenterCoordinates() {
- // Check the center of the circle against a separate calculation
- double charge = Math.signum(pt);
- double rC = CURVATURE * Math.abs(pt);
- double xC = (rC - charge * d0) * Math.cos(phi0 - charge * Math.PI / 2);
- double yC = (rC - charge * d0) * Math.sin(phi0 - charge * Math.PI / 2);
- assertEquals(xC, helix.getXc(), TOLERANCE);
- assertEquals(yC, helix.getYc(), TOLERANCE);
- }
-
- @Test
- public void testEndPoint() {
- // End the helix at 1m from the beam pipe and check that the last point is at 1m
- double alphaMax = helix.getAlphaCylinder(100., 250.);
- assertEquals(100., helix.getRho(alphaMax), TOLERANCE);
- }
-}
diff --git a/graphics/AtlantisJava/test/src/atlantis/data/AOldHelixTest.java b/graphics/AtlantisJava/test/src/atlantis/data/AOldHelixTest.java
deleted file mode 100644
index 39b5077be33..00000000000
--- a/graphics/AtlantisJava/test/src/atlantis/data/AOldHelixTest.java
+++ /dev/null
@@ -1,92 +0,0 @@
-package atlantis.data;
-
-import static org.junit.Assert.*;
-
-import org.junit.Before;
-import org.junit.Test;
-
-import atlantis.parameters.APar;
-
-import static java.lang.Math.PI;
-
-public class AOldHelixTest {
- /** Arbitrary tolerance for floating-point comparisons */
- private static final double TOLERANCE = 0.00001;
-
- @Before
- public void setUp() throws Exception {
- APar.constructDummyForTesting();
- }
-
- @Test
- public void helixFromNominalVertex() {
- // Input: rhoVtx,phiVtx,zVtx,pt,phi,eta,charge
- // Start at (0,0,0), pt=2, eta=0 so perp to z axis
- // phi = 0 (arbitrary), positive charge (+1)
- // Expect all params 0 except ptInverse = 0.5
- AOldHelix helix = new AOldHelix(0,0,0,2,0,0,1);
- assertHelixParametersEqual("Wrong helix parameters.",0,0,0,0,0.5,helix.getPar());
- // charge = -1 so ptInverse changes sign
- helix = new AOldHelix(0,0,0,2,0,0,-1);
- assertHelixParametersEqual("Wrong helix parameters.",0,0,0,0,-0.5,helix.getPar());
- }
-
- @Test
- public void helixStartingAtPCA() {
- /* Input: rhoVtx,phiVtx,zVtx,pt,phi,eta,charge
- * Circular track (pz=0) starting at point closest to beam, at non-zero z.
- * Perpendicular to line from beam to starting vertex: phi = phiVtx + PI/2
- * Start in upwards direction, from point to the right of the beam axis, */
- AOldHelix helix = new AOldHelix(0.1f,0,0.25f,1,(float)(PI/2),0,1);
- double[] actualParameters = helix.getPar();
- /* Closest approach is where we started so phi at PCA is same as phi at start.
- * Note that d0 is negative. */
- assertHelixParametersEqual("",-0.1,0.25,PI/2,0,1,actualParameters);
- /* Same starting position and direction, but negative particle.
- * No change to d0, which is still negative. */
- helix = new AOldHelix(0.1f,0,0.25f,1,(float)(PI/2),0,-1);
- actualParameters = helix.getPar();
- assertHelixParametersEqual("",-0.1,0.25,PI/2,0,-1,actualParameters);
- /*
- * Positive and negative particles, now starting in same direction (upwards)
- * but from a starting position to the left of the beam.
- * This time d0 is positive.
- */
- helix = new AOldHelix(0.1f,(float)PI,0.25f,1,(float)(PI/2),0,1);
- actualParameters = helix.getPar();
- assertHelixParametersEqual("",0.1,0.25,PI/2,0,1,actualParameters);
- helix = new AOldHelix(0.1f,(float)PI,0.25f,1,(float)(PI/2),0,-1);
- actualParameters = helix.getPar();
- assertHelixParametersEqual("",0.1,0.25,PI/2,0,-1,actualParameters);
- }
-
- protected void assertHelixParametersEqual(String message, double d0, double z0,
- double phi0, double tL, double ptInverse, double[] actualParameters) {
- assertD0Equals(message,d0,actualParameters);
- assertZ0Equals(message,z0,actualParameters);
- assertPhi0Equals(message,phi0,actualParameters);
- assertTLEquals(message,tL,actualParameters);
- assertPtInverseEquals(message,ptInverse,actualParameters);
- }
-
- protected void assertD0Equals(String message, double expected, double[] actualParameters) {
- assertEquals(message+" Wrong d0.",expected,actualParameters[0],TOLERANCE);
- }
-
- protected void assertZ0Equals(String message, double expected, double[] actualParameters) {
- assertEquals(message+" Wrong z0.",expected,actualParameters[1],TOLERANCE);
- }
-
- protected void assertPhi0Equals(String message, double expected, double[] actualParameters) {
- assertEquals(message+" Wrong phi0.",expected,actualParameters[2],TOLERANCE);
- }
-
- protected void assertTLEquals(String message, double expected, double[] actualParameters) {
- assertEquals(message+" Wrong tL.",expected,actualParameters[3],TOLERANCE);
- }
-
- protected void assertPtInverseEquals(String message, double expected, double[] actualParameters) {
- assertEquals(message+" Wrong ptInverse.",expected,actualParameters[4],TOLERANCE);
- }
-
-}
diff --git a/graphics/AtlantisJava/test/src/atlantis/event/AEventInfoTest.java b/graphics/AtlantisJava/test/src/atlantis/event/AEventInfoTest.java
deleted file mode 100644
index 8c541eecb5e..00000000000
--- a/graphics/AtlantisJava/test/src/atlantis/event/AEventInfoTest.java
+++ /dev/null
@@ -1,68 +0,0 @@
-package atlantis.event;
-
-import static org.junit.Assert.*;
-
-import org.junit.Test;
-
-public class AEventInfoTest {
- private static final long eventNumber=12345;
- private static final long runNumber=123;
-
- @Test
- public void testAEventInfoCreation() {
- AEventInfo e = new AEventInfo(eventNumber,runNumber,"TIME","SOURCE","LUMIBLOCK","EVENTPROPERTIES");
- assertAEventInfo(e,eventNumber,runNumber,"TIME","SOURCE","LUMIBLOCK","EVENTPROPERTIES");
- }
-
- /**
- * Create AEventInfo object with null or other special values for parameters.
- */
- @Test
- public void testAEventInfoCreationChecks() {
- AEventInfo e1 = new AEventInfo(eventNumber,runNumber,null,null,null,null);
- assertAEventInfo(e1,eventNumber,runNumber,"n/a","n/a","default","default");
- AEventInfo e2 = new AEventInfo(eventNumber,runNumber,null,null,"blah-1","blah-1");
- assertAEventInfo(e2,eventNumber,runNumber,"n/a","n/a","default","default");
- }
-
- @Test
- public void testAEventCopyConstructor() {
- AEventInfo e0 = new AEventInfo(eventNumber,runNumber,"TIME","SOURCE","LUMIBLOCK","EVENTPROPERTIES");
- AEventInfo e = new AEventInfo(e0);
- assertAEventInfo(e,eventNumber,runNumber,"TIME","SOURCE","LUMIBLOCK","EVENTPROPERTIES");
- }
-
- @Test
- public void testHashCode() {
- // Check different run/event numbers give different hash codes
- AEventInfo e1 = new AEventInfo(eventNumber,runNumber,"TIME","SOURCE","LUMIBLOCK","EVENTPROPERTIES");
- AEventInfo e2 = new AEventInfo(eventNumber+1,runNumber,"TIME","SOURCE","LUMIBLOCK","EVENTPROPERTIES");
- AEventInfo e3 = new AEventInfo(eventNumber,runNumber+1,"TIME","SOURCE","LUMIBLOCK","EVENTPROPERTIES");
- int h1 = e1.hashCode();
- int h2 = e2.hashCode();
- int h3 = e3.hashCode();
- assertTrue("hash codes should be different for e1,e2",h2!=h1);
- assertTrue("hash codes should be different for e1,e3",h1!=h3);
- assertTrue("hash codes should be different for e2,e3",h2!=h3);
- }
-
- @Test
- public void testEqualsAEventInfo() {
- AEventInfo e1a = new AEventInfo(eventNumber,runNumber,"TIME","SOURCE","LUMIBLOCK","EVENTPROPERTIES");
- AEventInfo e1b = new AEventInfo(eventNumber,runNumber,"TIME","SOURCE","LUMIBLOCK","EVENTPROPERTIES");
- AEventInfo e2 = new AEventInfo(eventNumber+1,runNumber,"TIME","SOURCE","LUMIBLOCK","EVENTPROPERTIES");
- assertTrue("equals should return true for e1a,e1b",e1a.equals(e1b));
- assertFalse("equals should return false for e1a,e2",e1a.equals(e2));
- }
-
- /** Check values in AEventInfo object */
- private void assertAEventInfo(AEventInfo eventInfo, long event, long run, String time, String source, String lumiBlock, String eventProperties) {
- assertEquals("event number not set correctly",event,eventInfo.getEventNumber());
- assertEquals("run number not set correctly",run,eventInfo.getRunNumber());
- assertEquals("time not set correctly",time,eventInfo.getDateTime());
- assertEquals("source not set correctly",source,eventInfo.getSourceName());
- assertEquals("source not set correctly",lumiBlock,eventInfo.getLumiBlock());
- assertEquals("event properties not set correctly",eventProperties,eventInfo.getEventProperties());
- }
-
-}
diff --git a/graphics/AtlantisJava/test/src/atlantis/graphics/ACoordTest.java b/graphics/AtlantisJava/test/src/atlantis/graphics/ACoordTest.java
deleted file mode 100644
index 24f5de94ef3..00000000000
--- a/graphics/AtlantisJava/test/src/atlantis/graphics/ACoordTest.java
+++ /dev/null
@@ -1,73 +0,0 @@
-package atlantis.graphics;
-
-import java.awt.geom.Point2D;
-import java.util.ArrayList;
-import java.util.List;
-
-import org.junit.Before;
-import org.junit.BeforeClass;
-import org.junit.Test;
-
-import atlantis.parameters.APar;
-import static org.junit.Assert.*;
-
-public class ACoordTest {
- private static final double TOLERANCE = 0.001;
-
- @BeforeClass
- public static void setUpOnce() throws Exception {
- APar.constructDummyForTesting();
- }
-
- @Test
- public void constructACoordWithOnePoint() {
- ACoord coord = new ACoord(0.0, 0.0, 0);
- Point2D.Double point = new Point2D.Double(0.0,0.0);
- assertContainsPoints(coord,point);
- }
-
- @Test
- public void constructACoordWithOneArrayOfPoints() {
- double[] h = {0.0, 1.0, -1.0, 2.5};
- double[] v = {0.0, 0.0, 1.0, -2.5};
- ACoord coord = new ACoord(h,v);
- Point2D.Double[] expectedPoints = createPointsArray(h,v);
- assertContainsPoints(coord,expectedPoints);
- }
-
- /**
- * Currently just checks first set of points, i.e. x = hv[0][0][i], y = [1][0][i]
- * @param coord
- * @param points
- */
- protected static void assertContainsPoints(ACoord coord, Point2D.Double... points) {
- double[] x = coord.hv[0][0];
- double[] y = coord.hv[1][0];
- int xLen = x.length;
- int yLen = y.length;
- assertTrue(String.format(
- "Numbers of x and y coordinates are not equal: %d, %d",xLen,yLen),
- xLen==yLen);
- assertTrue(String.format(
- "Wrong number of points: expected %d, found %d",points.length,xLen),
- points.length==xLen);
- int i=0;
- for (Point2D.Double point : points) {
- Point2D.Double hvPoint = new Point2D.Double(x[i],y[i]);
- double distance = hvPoint.distance(point);
- if (distance>TOLERANCE) {
- fail(String.format("Didn't find expected points. First difference is point %d: expected (%f,%f), found (%f,%f)",
- i,point.x,point.y,hvPoint.x,hvPoint.y));
- }
- i++;
- }
- }
-
- private Point2D.Double[] createPointsArray(double[] x, double[] y) {
- Point2D.Double[] points = new Point2D.Double[x.length];
- for (int i=0; i<x.length; i++) {
- points[i] = new Point2D.Double(x[i], y[i]);
- }
- return points;
- }
-}
diff --git a/graphics/AtlantisJava/test/src/atlantis/list/AListManagerTest.java b/graphics/AtlantisJava/test/src/atlantis/list/AListManagerTest.java
deleted file mode 100644
index 3b2e70bd5bf..00000000000
--- a/graphics/AtlantisJava/test/src/atlantis/list/AListManagerTest.java
+++ /dev/null
@@ -1,51 +0,0 @@
-package atlantis.list;
-
-import static org.junit.Assert.*;
-
-import org.junit.Test;
-
-import atlantis.utils.A4Vector;
-
-public class AListManagerTest {
- private static final double TOLERANCE = 0.00001;
-
- @Test
- public void testTotalEt() {
- Summarizer summ = new Summarizer();
- A4Vector pos = new A4Vector(3.0,0,0,4.0);
- String posDescription = "A positive 4vector";
- A4Vector neg = new A4Vector(-3.0,0,0,4.0);
- String negDescription = "A negative 4vector";
- summ.addAndGetInfo(pos, posDescription);
- summ.addAndGetInfo(neg, negDescription);
- double totalEt = summ.getTotalEt();
- assertEquals(totalEt,10.0,TOLERANCE);
- }
-
- @Test
- public void testTotalPt() {
- Summarizer summ = new Summarizer();
- A4Vector pos = new A4Vector(3.0,0,0,4.0);
- String posDescription = "A positive 4vector";
- A4Vector neg = new A4Vector(-3.0,0,0,4.0);
- String negDescription = "A negative 4vector";
- summ.addAndGetInfo(pos, posDescription);
- summ.addAndGetInfo(neg, negDescription);
- double totalPt = summ.getTotalPt();
- assertEquals(totalPt,0.0,TOLERANCE);
- }
-
- @Test
- public void testTotalMt() {
- Summarizer summ = new Summarizer();
- A4Vector pos = new A4Vector(3.0,0,0,4.0);
- String posDescription = "A positive 4vector";
- A4Vector neg = new A4Vector(-3.0,0,0,4.0);
- String negDescription = "A negative 4vector";
- summ.addAndGetInfo(pos, posDescription);
- summ.addAndGetInfo(neg, negDescription);
- double totalMt = summ.getTotalMt();
- assertEquals(totalMt,10.0,TOLERANCE);
- }
-
-}
diff --git a/graphics/AtlantisJava/test/src/atlantis/parameters/AAbstractParameterTest.java b/graphics/AtlantisJava/test/src/atlantis/parameters/AAbstractParameterTest.java
deleted file mode 100644
index c2df08a2a55..00000000000
--- a/graphics/AtlantisJava/test/src/atlantis/parameters/AAbstractParameterTest.java
+++ /dev/null
@@ -1,120 +0,0 @@
-package atlantis.parameters;
-
-import static org.junit.Assert.*;
-
-import org.junit.Before;
-import org.junit.Test;
-
-import testutils.AtlantisInit;
-
-import atlantis.canvas.ACanvas;
-
-/**
- * Tests for AAbstractParameter.
- * @author waugh
- *
- */
-public class AAbstractParameterTest {
- /** Arbitrary tolerance for floating-point comparisons */
- private static final double TOLERANCE = 0.00001;
-
- private AAbstractParameter parameter;
-
- @Before
- public void setUp() throws Exception {
- AtlantisInit.init();
- APar.constructDummyForTesting();
- ACanvas.constructDummyForTesting();
- parameter = new AAbstractParameter("name", "screen name", null, 0, 0, null, null, false, false, false, 0, 0, 0) {
- {wCount = 1; data = new AParameterData(wCount);}
- public void setD(double v) {}
- public void setI(int v) {}
- public void refresh() {}
- };
- }
-
- @Test
- public void testAAbstractParameter() {
- assertNotNull(parameter);
- }
-
- @Test
- public void testSaveAndRestoreDefaults() {
- // Access member variables directly since set and other methods rely on
- // information about existing windows. Rely on uninitialized
- // APar.currentIndex being zero.
-
- // Set value, status etc.
- parameter.valueType = AAbstractParameter.FLOAT;
- parameter.data.setValue(1.0);
- parameter.data.setStatus(false);
- parameter.data.setOperator("");
- parameter.range = AAbstractParameter.resolvePossibleValues("0:10", AAbstractParameter.FLOAT);
- parameter._setD(1.0);
- parameter.hasStatus = true;
- parameter.setStatus(true);
- parameter._setOperator("A"); // no restriction on value of operator?
- parameter.setScope(AAbstractParameter.LOCAL);
- // Save current settings as defaults then change them
- parameter.saveDefaults();
- parameter._setD(2.0);
- parameter.setStatus(false);
- parameter._setOperator("B");
- parameter.setScope(AAbstractParameter.GLOBAL);
- // Make sure the current settings have changed
- double value = parameter.getD();
- boolean status = parameter.getStatus();
- String operator = parameter.getOperator();
- int scope = parameter.getScope();
- assertEquals("parameter value not changed from default",2.0,value,TOLERANCE);
- assertEquals("parameter status not changed from default",false,status);
- assertEquals("parameter operator not changed from default","B",operator);
- assertEquals("parameter scope not changed from default",AAbstractParameter.GLOBAL,scope);
- // Then restore defaults and verify the original settings are back
- parameter.restoreDefaults();
- double restoredValue = parameter.getD();
- boolean restoredStatus = parameter.getStatus();
- String restoredOperator = parameter.getOperator();
- int restoredScope = parameter.getScope();
- assertEquals("parameter value not set to default",1.0,restoredValue,TOLERANCE);
- assertEquals("parameter status not set to default",true,restoredStatus);
- assertEquals("parameter operator not set to default","A",restoredOperator);
- assertEquals("parameter scope not set to default",AAbstractParameter.LOCAL,restoredScope);
- }
-
- @Test
- public void testPossibleValuesFloat() {
- parameter.valueType = AAbstractParameter.FLOAT;
- String possibleValues = "1.0:2.0,3.0:4.5";
- parameter.range = AAbstractParameter.resolvePossibleValues(possibleValues, AAbstractParameter.FLOAT);
- assertValidValue(parameter,possibleValues,1.2);
- assertValidValue(parameter,possibleValues,4.4);
- assertInvalidValue(parameter,possibleValues,0.9);
- assertInvalidValue(parameter,possibleValues,2.1);
- assertInvalidValue(parameter,possibleValues,9.9);
- assertInvalidValue(parameter,possibleValues,-1.2);
- }
-
- @Test
- public void testPossibleValuesInt() {
- parameter.valueType = AAbstractParameter.INT;
- String possibleValues = "1,2,4";
- parameter.range = AAbstractParameter.resolvePossibleValues(possibleValues, AAbstractParameter.FLOAT);
- assertValidValue(parameter,possibleValues,1);
- assertValidValue(parameter,possibleValues,2);
- assertValidValue(parameter,possibleValues,4);
- assertInvalidValue(parameter,possibleValues,3);
- assertInvalidValue(parameter,possibleValues,-1);
- }
-
- private static void assertValidValue(AAbstractParameter parameter, String possibleValues, double value) {
- boolean validated = parameter.validateValue(value);
- assertTrue(String.format("Value %f incorrectly fails validation with possible values %s",value,possibleValues),validated);
- }
-
- private static void assertInvalidValue(AAbstractParameter parameter, String possibleValues, double value) {
- boolean validated = parameter.validateValue(value);
- assertFalse(String.format("Value %f incorrectly passes validation with possible values %s",value,possibleValues),validated);
- }
-
-}
diff --git a/graphics/AtlantisJava/test/src/atlantis/parameters/AParameterDataTest.java b/graphics/AtlantisJava/test/src/atlantis/parameters/AParameterDataTest.java
deleted file mode 100644
index afab7d5293a..00000000000
--- a/graphics/AtlantisJava/test/src/atlantis/parameters/AParameterDataTest.java
+++ /dev/null
@@ -1,84 +0,0 @@
-package atlantis.parameters;
-
-import org.junit.Before;
-import org.junit.Test;
-
-import static org.junit.Assert.*;
-
-/**
- * We don't test the methods that call APar to find out the current window,
- * which is not defined in unit tests.
- *
- * @author waugh
- *
- */
-public class AParameterDataTest {
- private static final int numWindows = 3;
- private static final double TOLERANCE = 0.001;
-
- private AParameterData paramData;
-
- @Before
- public void setUp() {
- APar.constructDummyForTesting();
- paramData = new AParameterData(numWindows);
- }
-
- @Test
- /**
- * Check default values for all windows.
- */
- public void constructDefault() {
- for (int iWindow=0; iWindow<numWindows; ++iWindow) {
- AParameterState state = paramData.getState(iWindow);
- assertValuesEqual("Default state is wrong.",0.0,false,"",state);
- }
- }
-
- @Test
- /**
- * Copy values from window 1 to window 2.
- */
- public void copyValues() {
- paramData.setValue(1, 1.0);
- paramData.setStatus(1, true);
- paramData.setOperator(1, "+");
- paramData.copy(1, 2);
- AParameterState state = paramData.getState(2);
- assertValuesEqual("Copied state is wrong.",1.0,true,"+",state);
- }
-
- @Test
- public void saveAndRestoreValues() {
- paramData.setValue(1, 1.0);
- paramData.setStatus(1, true);
- paramData.setOperator(1, "+");
- paramData.saveDefaults();
- paramData.setValue(1, 2.0);
- paramData.setStatus(1, false);
- paramData.setOperator(1, "-");
- AParameterState state = paramData.getState(1);
- assertValuesEqual("Set state is wrong.",2.0,false,"-",state);
- paramData.restoreDefaults();
- state = paramData.getState(1);
- assertValuesEqual("Restored state is wrong.",1.0,true,"+",state);
- }
-
- @Test
- public void testGlobalize() {
- paramData.setValue(1, 1.0);
- paramData.setStatus(1, true);
- paramData.setOperator(1, "+");
- paramData.globalize(1);
- for (int iWindow=0; iWindow<numWindows; ++iWindow) {
- AParameterState state = paramData.getState(iWindow);
- assertValuesEqual("State wrong after globalization.",1.0,true,"+",state);
- }
- }
-
- private static void assertValuesEqual(String message, double value, boolean status, String operator, AParameterState actual) {
- assertEquals(message+" Wrong value.",value,actual.value,TOLERANCE);
- assertEquals(message+" Wrong status.",status,actual.status);
- assertEquals(message+" Wrong operator.",operator,actual.operator);
- }
-}
diff --git a/graphics/AtlantisJava/test/src/atlantis/utils/A3VectorTest.java b/graphics/AtlantisJava/test/src/atlantis/utils/A3VectorTest.java
deleted file mode 100644
index 0b88546b31d..00000000000
--- a/graphics/AtlantisJava/test/src/atlantis/utils/A3VectorTest.java
+++ /dev/null
@@ -1,101 +0,0 @@
-package atlantis.utils;
-
-import static org.junit.Assert.*;
-
-import org.junit.Test;
-
-/**
- * Tests for A3Vector class. Initial rather clumsy implementation just to get started.
- * @author waugh
- *
- */
-public class A3VectorTest {
- /** Arbitrary tolerance for floating-point comparisons */
- private static final double TOLERANCE = 0.00001;
-
- @Test
- public void testA3Vector() {
- A3Vector v = new A3Vector();
- assertA3VectorEquals("three-vector",0.0,0.0,0.0,v,TOLERANCE);
- }
-
- @Test
- public void testA3VectorDoubleDoubleDouble() {
- A3Vector v = new A3Vector(1.0,-2.5,3.3);
- assertA3VectorEquals("three-vector",1.0,-2.5,3.3,v,TOLERANCE);
- }
-
- @Test
- public void testFromEtaPhiR() {
- A3Vector v = A3Vector.fromEtaPhiR(0.0, Math.PI, 2.0);
- assertA3VectorEquals("three-vector",-2.0,0.0,0.0,v,TOLERANCE);
- }
-
- @Test
- public void testFromRhoPhiZ() {
- A3Vector v = A3Vector.fromRhoPhiZ(1.0, Math.PI, 1.0);
- assertA3VectorEquals("three-vector",-1.0,0.0,1.0,v,TOLERANCE);
- }
-
- @Test
- public void testGetNormalized() {
- A3Vector v0 = new A3Vector(1.0,1.0,1.0);
- double a = 1 / Math.sqrt(3);
- A3Vector v = v0.getNormalized();
- assertA3VectorEquals("three-vector",a,a,a,v,TOLERANCE);
- }
-
- @Test
- public void testNormalize() {
- A3Vector v = new A3Vector(1.0,1.0,1.0);
- v.normalize();
- double a = 1 / Math.sqrt(3);
- assertA3VectorEquals("three-vector",a,a,a,v,TOLERANCE);
- }
-
- @Test
- public void testMagnitude() {
- A3Vector v = new A3Vector(1.0,1.0,1.0);
- double r = v.magnitude();
- double rExpected = Math.sqrt(3);
- assertEquals("magnitude calculation",rExpected,r,TOLERANCE);
- }
-
- @Test
- public void testScale() {
- A3Vector v = new A3Vector(1.0,1.0,1.0);
- v.scale(0.5);
- assertA3VectorEquals("three-vector",0.5,0.5,0.5,v,TOLERANCE);
- }
-
- @Test
- public void testAdd() {
- A3Vector v = new A3Vector(1.0,2.0,3.0);
- A3Vector v0 = new A3Vector(0.0,1.0,-0.5);
- v.add(v0);
- assertA3VectorEquals("three-vector",1.0,3.0,2.5,v,TOLERANCE);
- }
-
- @Test
- public void testSubtract() {
- A3Vector v = new A3Vector(1.0,2.0,3.0);
- A3Vector v0 = new A3Vector(0.0,1.0,-0.5);
- v.subtract(v0);
- assertA3VectorEquals("three-vector",1.0,1.0,3.5,v,TOLERANCE);
- }
-
- /**
- * Check given A3Vector has expected components
- */
- private static void assertA3VectorEquals(String message, double x, double y, double z,
- A3Vector v, double delta) {
- if (Math.abs(v.x-x)>delta || Math.abs(v.y-y)>delta ||
- Math.abs(v.z-z)>delta) {
- String vExpected = String.format("<%f,%f,%f>", x,y,z);
- String vActual = String.format("<%f,%f,%f>", v.x,v.y,v.z);
- String summary = message+" "+
- "expected:"+vExpected+" but was:"+vActual;
- fail(summary);
- }
- }
-}
diff --git a/graphics/AtlantisJava/test/src/atlantis/utils/A4VectorTest.java b/graphics/AtlantisJava/test/src/atlantis/utils/A4VectorTest.java
deleted file mode 100644
index 03fb94f2001..00000000000
--- a/graphics/AtlantisJava/test/src/atlantis/utils/A4VectorTest.java
+++ /dev/null
@@ -1,128 +0,0 @@
-package atlantis.utils;
-
-
-import static org.junit.Assert.*;
-
-import org.junit.Test;
-
-/**
- * Tests for A4Vector class.
- */
-public class A4VectorTest {
- /** Arbitrary tolerance for floating-point comparisons */
- private static final double TOLERANCE = 0.00001;
-
- @Test
- public void testA4Vector() {
- A4Vector v = new A4Vector();
- assertA4VectorEquals("construct zero 4-vector",0.0,0.0,0.0,0.0,v,TOLERANCE);
- }
-
- @Test
- public void testA4VectorDoubleDoubleDoubleDouble() {
- // fourth argument is mass, not energy
- // use 3-4-5 numbers for simple arithmetic
- A4Vector v = new A4Vector(2.0,2.0,-1.0,4.0);
- assertA4VectorEquals("construct 4-vector",2.0,2.0,-1.0,5.0,v,TOLERANCE);
- }
-
- @Test
- public void testA4VectorA3VectorDouble() {
- A3Vector v3 = new A3Vector(2.0,2.0,-1.0);
- A4Vector v = new A4Vector(v3,4.0);
- assertA4VectorEquals("construct 4-vector",2.0,2.0,-1.0,5.0,v,TOLERANCE);
- }
-
- @Test
- public void testSet() {
- A4Vector v = new A4Vector();
- v.set(2.0,2.0,-1.0,4.0);
- assertA4VectorEquals("set 4-vector",2.0,2.0,-1.0,5.0,v,TOLERANCE);
- }
-
- @Test
- public void testSetPtEtaPhiM() {
- A4Vector v1 = new A4Vector();
- v1.setPtEtaPhiM(1.0, 0.0, 0.0, 0.0);
- assertA4VectorEquals("set 4-vector",1.0,0.0,0.0,1.0,v1,TOLERANCE);
- // test with negative pT
- A4Vector v2 = new A4Vector();
- v2.setPtEtaPhiM(-1.0, 0.0, 0.0, 0.0);
- assertA4VectorEquals("set 4-vector",1.0,0.0,0.0,1.0,v2,TOLERANCE);
- }
-
- @Test
- public void testGetP() {
- A4Vector v = new A4Vector(2.0,2.0,-1.0,4.0);
- double p = v.getP();
- assertEquals(3.0,p,TOLERANCE);
- }
-
- @Test
- public void testGetPt() {
- A4Vector v = new A4Vector(0.3,0.4,-1.0,4.0);
- double pt = v.getPt();
- assertEquals(0.5,pt,TOLERANCE);
- }
-
- @Test
- public void testGetE() {
- A4Vector v = new A4Vector(2.0,2.0,-1.0,4.0);
- double e = v.getE();
- assertEquals(5.0,e,TOLERANCE);
- }
-
- @Test
- public void testgetEt() {
- A4Vector v = new A4Vector(1.0,1.0,2.0,3.0);
- double et = v.getEt();
- double x = Math.sqrt(5.0);
- assertEquals(x,et,TOLERANCE);
- }
-
- @Test
- public void testGetMass() {
- A4Vector v = new A4Vector(2.0,2.0,-1.0,4.0);
- double m = v.getMass();
- assertEquals(4.0,m,TOLERANCE);
- }
-
- @Test
- public void testGetMt() {
- A4Vector v = new A4Vector(1.0,1.0,2.0,3.0);
- double mt = v.getMt();
- double x = Math.sqrt(3.0);
- assertEquals(x,mt,TOLERANCE);
- }
-
- @Test
- public void testAddDoubleDoubleDoubleDouble() {
- A4Vector v = new A4Vector(2.0,2.0,-1.0,4.0);
- v.add(2.2,2.2,-1.1,4.4);
- assertA4VectorEquals("add 4-vectors",4.2,4.2,-2.1,10.5,v,TOLERANCE);
- }
-
- @Test
- public void testAddA4Vector() {
- A4Vector v = new A4Vector(2.0,2.0,-1.0,4.0);
- A4Vector v2 = new A4Vector(2.2,2.2,-1.1,4.4);
- v.add(v2);
- assertA4VectorEquals("add 4-vectors",4.2,4.2,-2.1,10.5,v,TOLERANCE);
- }
-
- /**
- * Check given A4Vector has expected components
- */
- private static void assertA4VectorEquals(String message, double px, double py, double pz, double e,
- A4Vector v, double delta) {
- if (Math.abs(v.px-px)>delta || Math.abs(v.py-py)>delta ||
- Math.abs(v.pz-pz)>delta || Math.abs(v.e-e)>delta) {
- String vExpected = String.format("<%f,%f,%f,%f>", px,py,pz,e);
- String vActual = String.format("<%f,%f,%f,%f>", v.px,v.py,v.pz,v.e);
- String summary = message+" "+
- "expected:"+vExpected+" but was:"+vActual;
- fail(summary);
- }
- }
-
-}
diff --git a/graphics/AtlantisJava/test/src/atlantis/utils/AIdRangeTest.java b/graphics/AtlantisJava/test/src/atlantis/utils/AIdRangeTest.java
deleted file mode 100644
index cae60427953..00000000000
--- a/graphics/AtlantisJava/test/src/atlantis/utils/AIdRangeTest.java
+++ /dev/null
@@ -1,90 +0,0 @@
-package atlantis.utils;
-
-import static org.junit.Assert.assertEquals;
-import org.junit.Test;
-
-/**
- * Test for the IdHelper range class used to represent
- * possible values of an identifier field.
- *
- * @author Eric Jansen
- */
-public class AIdRangeTest {
-
- public AIdRangeTest() {}
-
- @Test
- public void testEmptyRange() throws Exception {
- AIdRange a = new AIdRange();
- AIdRange b = new AIdRange(new int[] {1, 2});
-
- a.add(b);
- assertEquals(a, b);
-
- b.add(a);
- assertEquals(a, b);
- }
-
- @Test
- public void testContainsRange() throws Exception {
- AIdRange a = new AIdRange(1, 3);
- AIdRange b = new AIdRange(new int[] {1, 2, 4});
- AIdRange c = new AIdRange(1, 2);
-
- assert(a.contains(c));
- assert(b.contains(c));
- assert(!a.contains(b));
- assert(!b.contains(a));
- }
-
- @Test
- public void testContainsValue() throws Exception {
- AIdRange a = new AIdRange(-5, 5);
- AIdRange b = new AIdRange(new int[] {-1, 3, 9});
-
- assert(!a.contains(-6));
- assert(a.contains(-5));
- assert(a.contains(2));
- assert(a.contains(5));
- assert(!a.contains(6));
-
- assert(b.contains(-1));
- assert(!b.contains(2));
- assert(b.contains(3));
- assert(b.contains(9));
- }
-
- @Test
- public void testAddRange() throws Exception {
- AIdRange a = new AIdRange(new int[] {-1, 0, 1, 2, 5, 6});
- AIdRange b = new AIdRange(new int[] {-1, 1, 2, 6});
- AIdRange c = new AIdRange(new int[] {0, 1, 2, 5});
-
- b.add(c);
- assert(a.equals(b));
-
- AIdRange d = new AIdRange(-5, 5);
- AIdRange e = new AIdRange(new int[] {-5, -4});
- AIdRange f = new AIdRange(-3, 5);
-
- e.add(f);
- assert(d.equals(e));
-
- AIdRange g = new AIdRange(0, 2);
- AIdRange h = new AIdRange(new int[] {0, 1});
- AIdRange i = new AIdRange(new int[] {1, 2});
-
- h.add(i);
- assert(g.equals(h)); // comparing [ 0 -> 2 ] to [ 0 1 2 ]
- }
-
- @Test
- public void testToString() throws Exception {
- AIdRange a = new AIdRange(-2, 15);
- AIdRange b = new AIdRange(new int[] {2, 3, 5});
- AIdRange c = new AIdRange();
- assertEquals("[ -2 -> 15 ]", a.toString());
- assertEquals("[ 2 3 5 ]", b.toString());
- assertEquals("[ ]", c.toString());
- }
-}
diff --git a/graphics/AtlantisJava/test/src/atlantis/utils/AMathTest.java b/graphics/AtlantisJava/test/src/atlantis/utils/AMathTest.java
deleted file mode 100644
index 8bb888866ac..00000000000
--- a/graphics/AtlantisJava/test/src/atlantis/utils/AMathTest.java
+++ /dev/null
@@ -1,69 +0,0 @@
-/**
- *
- */
-package atlantis.utils;
-
-import static org.junit.Assert.*;
-import org.junit.Test;
-
-import static java.lang.Math.PI;
-
-/**
- * @author waugh
- *
- */
-public class AMathTest {
- /** Arbitrary tolerance for floating-point comparisons */
- private static final double TOLERANCE = 0.00001;
-
- /**
- * Test method for {@link atlantis.utils.AMath#nearestPhiDegrees(double)}.
- */
- @Test
- public void testNearestPhiDegreesDouble() {
- assertEquals("Wrong value for phi",0.,AMath.nearestPhiDegrees(0.),TOLERANCE);
- assertEquals("Wrong value for phi",0.,AMath.nearestPhiDegrees(360.),TOLERANCE);
- assertEquals("Wrong value for phi",180.,AMath.nearestPhiDegrees(180.),TOLERANCE);
- assertEquals("Wrong value for phi",1.,AMath.nearestPhiDegrees(1.),TOLERANCE);
- assertEquals("Wrong value for phi",359.,AMath.nearestPhiDegrees(-1.),TOLERANCE);
- }
-
- /**
- * Test method for {@link atlantis.utils.AMath#nearestPhiRadians(double)}.
- */
- @Test
- public void testNearestPhiRadiansDouble() {
- assertEquals("Wrong value for phi",0.,AMath.nearestPhiRadians(0.),TOLERANCE);
- assertEquals("Wrong value for phi",0.,AMath.nearestPhiRadians(2*PI),TOLERANCE);
- assertEquals("Wrong value for phi",PI,AMath.nearestPhiRadians(PI),TOLERANCE);
- assertEquals("Wrong value for phi",0.1,AMath.nearestPhiRadians(0.1),TOLERANCE);
- assertEquals("Wrong value for phi",2*PI-0.1,AMath.nearestPhiRadians(-0.1),TOLERANCE);
- }
-
- /**
- * Test method for {@link atlantis.utils.AMath#nearestPhiDegrees(double, double)}.
- */
- @Test
- public void testNearestPhiDegreesDoubleDouble() {
- double phiMid = 360; // range [180,540)
- assertEquals("Wrong value for phi",180.,AMath.nearestPhiDegrees(180.0,phiMid),TOLERANCE);
- assertEquals("Wrong value for phi",180.,AMath.nearestPhiDegrees(540.0,phiMid),TOLERANCE);
- assertEquals("Wrong value for phi",360.,AMath.nearestPhiDegrees(360.0,phiMid),TOLERANCE);
- assertEquals("Wrong value for phi",361.,AMath.nearestPhiDegrees(1.0,phiMid),TOLERANCE);
- assertEquals("Wrong value for phi",539.,AMath.nearestPhiDegrees(179.0,phiMid),TOLERANCE);
- }
-
- /**
- * Test method for {@link atlantis.utils.AMath#nearestPhiRadians(double, double)}.
- */
- @Test
- public void testNearestPhiRadiansDoubleDouble() {
- double phiMid = 2*PI; // range [180,540)
- assertEquals("Wrong value for phi",PI,AMath.nearestPhiRadians(PI,phiMid),TOLERANCE);
- assertEquals("Wrong value for phi",PI,AMath.nearestPhiRadians(PI,phiMid),TOLERANCE);
- assertEquals("Wrong value for phi",2*PI,AMath.nearestPhiRadians(2*PI,phiMid),TOLERANCE);
- assertEquals("Wrong value for phi",2*PI+0.1,AMath.nearestPhiRadians(0.1,phiMid),TOLERANCE);
- assertEquals("Wrong value for phi",3*PI-0.1,AMath.nearestPhiRadians(PI-0.1,phiMid),TOLERANCE);
- }
-
-}
diff --git a/graphics/AtlantisJava/test/src/atlantis/utils/ANewIdHelperTest.java b/graphics/AtlantisJava/test/src/atlantis/utils/ANewIdHelperTest.java
deleted file mode 100644
index bad4515a8e3..00000000000
--- a/graphics/AtlantisJava/test/src/atlantis/utils/ANewIdHelperTest.java
+++ /dev/null
@@ -1,130 +0,0 @@
-package atlantis.utils;
-
-import atlantis.globals.AGlobals;
-import atlantis.utils.xml.AXMLErrorHandler;
-import java.io.InputStream;
-import javax.xml.parsers.DocumentBuilder;
-import javax.xml.parsers.DocumentBuilderFactory;
-import static org.junit.Assert.assertEquals;
-import static org.junit.Assert.fail;
-import org.junit.BeforeClass;
-import org.junit.Test;
-import org.w3c.dom.Document;
-import testutils.AtlantisInit;
-
-/**
- * Tests for the ANewIdHelper class. Tests are performed by fully
- * decoding compact identifiers of several subsystems.
- *
- * @author Eric Jansen
- */
-public class ANewIdHelperTest {
-
- public ANewIdHelperTest() {}
-
- @BeforeClass
- public static void setUpClass() throws Exception {
- AtlantisInit.init();
- String geometryBase = AGlobals.instance().getHomeDirectory() + "geometry/";
- InputStream isIdDict = AUtilities.getFileAsStream(geometryBase + "ATLAS_IDS.xml");
-
- DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance();
- factory.setValidating(true);
- DocumentBuilder parser = factory.newDocumentBuilder();
- parser.setErrorHandler(new AXMLErrorHandler());
-
- Document xmlDictDoc = parser.parse(isIdDict, geometryBase);
- ANewIdHelper.construct(xmlDictDoc.getDocumentElement());
-
- System.out.println("The loaded identifier structure is:\n"
- + ANewIdHelper.instance().getDictionary("ATLAS"));
- }
-
- @Test
- public void testPixel() throws Exception {
- ANewIdHelper idHelper = ANewIdHelper.instance();
- assertEquals("InnerDetector/Pixel/negative_endcap/0/15/0/86/76", idHelper.getFullIdentifier(8661285809946624l));
- }
-
- @Test
- public void testSCT() throws Exception {
- ANewIdHelper idHelper = ANewIdHelper.instance();
- assertEquals("InnerDetector/SCT/negative_endcap/1/23/2/0/683", idHelper.getFullIdentifier(137085611));
- assertEquals("InnerDetector/SCT/positive_endcap/8/50/0/1/609", idHelper.getFullIdentifier(219756129));
- }
-
- @Test
- public void testTRT() throws Exception {
- ANewIdHelper idHelper = ANewIdHelper.instance();
- assertEquals("InnerDetector/TRT/negative_endcap/2/2/6/7", idHelper.getFullIdentifier(270604512));
- assertEquals("InnerDetector/TRT/negative_endcap/11/1/7/9", idHelper.getFullIdentifier(280010016));
- assertEquals("InnerDetector/TRT/negative_barrel/9/0/18/7", idHelper.getFullIdentifier(311445728));
- assertEquals("InnerDetector/TRT/positive_barrel/5/2/22/10", idHelper.getFullIdentifier(340875584));
- assertEquals("InnerDetector/TRT/positive_endcap/7/10/1/13", idHelper.getFullIdentifier(376767904));
- assertEquals("InnerDetector/TRT/positive_endcap/31/13/7/18", idHelper.getFullIdentifier(402038336));
- }
-
- @Test
- public void testLAr() throws Exception {
- ANewIdHelper idHelper = ANewIdHelper.instance();
- assertEquals("LArCalorimeter/LArEM/negative-endcap-outer-wheel/2/1/37/72", idHelper.getFullIdentifier(3225785215439863808l));
- assertEquals("LArCalorimeter/LArEM/positive-barrel/1/0/167/15", idHelper.getFullIdentifier(765546014));
- assertEquals("LArCalorimeter/LArEM/negative-barrel/2/0/4/113", idHelper.getFullIdentifier(759171298));
- }
-
- @Test
- public void testTILE() throws Exception {
- ANewIdHelper idHelper = ANewIdHelper.instance();
- assertEquals("TileCalorimeter/Barrel/positive/28/0/1/0/0", idHelper.getFullIdentifier(1149698064));
- assertEquals("TileCalorimeter/Extended-barrel/negative/0/14/0/0/0", idHelper.getFullIdentifier(1207963136));
- }
-
- @Test
- public void testHEC() throws Exception {
- ANewIdHelper idHelper = ANewIdHelper.instance();
- assertEquals("LArCalorimeter/LArHEC/negative-endcap-outer-wheel/1/0/5/22", idHelper.getFullIdentifier(815095808));
- assertEquals("LArCalorimeter/LArHEC/negative-endcap-outer-wheel/2/0/6/22", idHelper.getFullIdentifier(823746560));
- assertEquals("LArCalorimeter/LArHEC/positive-endcap-outer-wheel/2/1/2/20", idHelper.getFullIdentifier(860438528));
- assertEquals("LArCalorimeter/LArHEC/positive-endcap-outer-wheel/3/0/8/0", idHelper.getFullIdentifier(866123776));
- assertEquals("LArCalorimeter/LArHEC/positive-endcap-outer-wheel/3/1/3/29", idHelper.getFullIdentifier(869126144));
- }
-
- @Test
- public void testFCAL() throws Exception {
- ANewIdHelper idHelper = ANewIdHelper.instance();
- assertEquals("LArCalorimeter/LArFCAL/negative-endcap-outer-wheel/1/4/13", idHelper.getFullIdentifier(873046016));
- assertEquals("LArCalorimeter/LArFCAL/negative-endcap-outer-wheel/1/45/0", idHelper.getFullIdentifier(878313472));
- assertEquals("LArCalorimeter/LArFCAL/positive-endcap-outer-wheel/1/3/0", idHelper.getFullIdentifier(906362880));
- assertEquals("LArCalorimeter/LArFCAL/positive-endcap-outer-wheel/2/23/14", idHelper.getFullIdentifier(917487616));
- assertEquals("LArCalorimeter/LArFCAL/positive-endcap-outer-wheel/3/15/15", idHelper.getFullIdentifier(924835840));
- }
-
- @Test
- public void testMDT() throws Exception {
- ANewIdHelper idHelper = ANewIdHelper.instance();
- assertEquals("MuonSpectrometer/BIL/-6/1/MDT/1/3/1", idHelper.getFullIdentifier(6922067811640541184l));
- assertEquals("MuonSpectrometer/BIL/-6/2/MDT/2/2/34", idHelper.getFullIdentifier(1611748384));
- assertEquals("MuonSpectrometer/BIL/1/5/MDT/1/2/3", idHelper.getFullIdentifier(1615597632));
- assertEquals("MuonSpectrometer/BOL/1/5/MDT/1/2/7", idHelper.getFullIdentifier(1682706624));
- assertEquals("MuonSpectrometer/EOL/2/3/MDT/2/1/6", idHelper.getFullIdentifier(1884438688));
- assertEquals("MuonSpectrometer/EIS/-1/6/MDT/2/3/36", idHelper.getFullIdentifier(2050843744));
- }
-
- @Test
- public void testRPC() throws Exception {
- ANewIdHelper idHelper = ANewIdHelper.instance();
- assertEquals("MuonSpectrometer/BML/-6/6/RPC/1/2/2/2/0/4", idHelper.getFullIdentifier(1645583372));
- }
-
- @Test
- public void testCSC() throws Exception {
- ANewIdHelper idHelper = ANewIdHelper.instance();
- assertEquals("MuonSpectrometer/CSS/-1/1/CSC/2/4/0/6", idHelper.getFullIdentifier(2064056960));
- }
-
- @Test
- public void testTGC() throws Exception {
- ANewIdHelper idHelper = ANewIdHelper.instance();
- assertEquals("MuonSpectrometer/T4E/1/10/TGC/2/1/15", idHelper.getFullIdentifier(2035436656));
- }
-}
diff --git a/graphics/AtlantisJava/test/src/guitest/AAssert.java b/graphics/AtlantisJava/test/src/guitest/AAssert.java
deleted file mode 100644
index 0010a959487..00000000000
--- a/graphics/AtlantisJava/test/src/guitest/AAssert.java
+++ /dev/null
@@ -1,28 +0,0 @@
-package guitest;
-
-import static org.junit.Assert.*;
-
-import java.util.Arrays;
-
-/**
- * Useful assertion methods for tests.
- * @author waugh
- *
- */
-public class AAssert {
- public static void assertArrayEqualsIgnoreOrder(String message,
- Object[] expecteds, Object[] actuals) {
- int lengthExp = expecteds.length;
- int lengthAct = actuals.length;
- if (lengthAct!=lengthExp) fail(message+
- ": array lengths differed, "+
- String.format("expected.length=%d,actual.length=%d",lengthExp,lengthAct));
- Object[] copyExpecteds = new Object[lengthExp];
- System.arraycopy(expecteds,0,copyExpecteds,0,lengthExp);
- Object[] copyActuals = new Object[lengthAct];
- System.arraycopy(actuals,0,copyActuals,0,lengthAct);
- Arrays.sort(copyExpecteds);
- Arrays.sort(copyActuals);
- assertArrayEquals(message,copyExpecteds,copyActuals);
- }
-}
diff --git a/graphics/AtlantisJava/test/src/guitest/AtlantisGUIFixture.java b/graphics/AtlantisJava/test/src/guitest/AtlantisGUIFixture.java
deleted file mode 100644
index 5d49d4fae4e..00000000000
--- a/graphics/AtlantisJava/test/src/guitest/AtlantisGUIFixture.java
+++ /dev/null
@@ -1,141 +0,0 @@
-package guitest;
-
-import java.awt.Dialog;
-import java.io.File;
-
-import org.fest.swing.core.BasicComponentFinder;
-import org.fest.swing.core.ComponentFinder;
-import org.fest.swing.core.ComponentFoundCondition;
-import org.fest.swing.core.Robot;
-import org.fest.swing.core.matcher.DialogMatcher;
-import org.fest.swing.core.matcher.FrameMatcher;
-import org.fest.swing.core.matcher.JButtonMatcher;
-import org.fest.swing.data.TableCell;
-import org.fest.swing.data.TableCellByColumnId;
-import org.fest.swing.exception.ComponentLookupException;
-import org.fest.swing.fixture.DialogFixture;
-import org.fest.swing.fixture.FrameFixture;
-import org.fest.swing.fixture.JButtonFixture;
-import org.fest.swing.fixture.JFileChooserFixture;
-import org.fest.swing.fixture.JTabbedPaneFixture;
-import org.fest.swing.fixture.JTableCellFixture;
-import org.fest.swing.fixture.JTableFixture;
-import org.fest.swing.fixture.JToolBarFixture;
-import org.fest.swing.timing.Pause;
-
-import static org.junit.Assert.*;
-
-import atlantis.gui.AGUI;
-
-/**
- * Fixture for testing the Atlantis GUI (class AGUI).
- * @author waugh
- *
- */
-public class AtlantisGUIFixture extends FrameFixture {
- private Robot robot;
- private ComponentFinder finder;
- private FrameFixture guiFixture;
-
- /**
- * Construct and return AtlantisGUIFixture using specified robot.
- * @param robot the robot to use
- * @return fixture for the Atlantis GUI
- */
- public static AtlantisGUIFixture getFixture(Robot robot) {
- ComponentFinder finder = BasicComponentFinder.finderWithCurrentAwtHierarchy();
- FrameMatcher matcherGuiTitle = FrameMatcher.withTitle("Atlantis GUI");
- ComponentFoundCondition guiFound = new ComponentFoundCondition("Atlantis GUI found",
- finder, matcherGuiTitle);
- Pause.pause(guiFound,30000);
- AGUI gui = (AGUI) guiFound.found();
- return new AtlantisGUIFixture(robot,gui);
- }
-
- /**
- * Construct AtlantisGUIFixture.
- * @param robot
- */
- public AtlantisGUIFixture(Robot robot, AGUI gui) {
- super(robot,gui);
- this.robot = robot;
- this.finder = BasicComponentFinder.finderWithCurrentAwtHierarchy();
- this.guiFixture = new FrameFixture(robot,gui);
- }
-
- /** Find AParametersTable for given supergroup and group */
- protected JTableFixture findParametersTable(String superGroup, String group) {
- JTabbedPaneFixture tabs = guiFixture.tabbedPane("parameterGroups");
- tabs.selectTab(superGroup);
- JTabbedPaneFixture subTabs = guiFixture.tabbedPane(superGroup);
- subTabs.selectTab(group);
- JTableFixture parametersTable = guiFixture.table(group);
- return parametersTable;
- }
-
- /**
- * Find table cell containing given parameter.
- * @param superGroup
- * @param group
- * @param parameter
- * @return
- */
- protected JTableCellFixture findParameterCell(String superGroup, String group, String parameter) {
- JTableFixture table = findParametersTable(superGroup,group);
- TableCell cellName = table.cell(parameter);
- int row = cellName.row; // Row containing cell with specified name
- JTableCellFixture cellValue = table.cell(TableCellByColumnId.row(row).columnId("Value"));
- return cellValue;
- }
-
- /** Find button in GUI with given text */
- protected JButtonFixture findGuiButton(String text) {
- JButtonMatcher matcher = JButtonMatcher.withText(text);
- return guiFixture.button(matcher);
- }
-
- /**
- * Open file using GUI
- * @param file event file
- */
- protected void openEventFile(File file) {
- guiFixture.menuItemWithPath("File", "Read Event Locally").click();
- // Sometimes we have more than one "Open" dialog, but should be only one showing
- Dialog dialogOpen = finder.find(DialogMatcher.withTitle("Open").andShowing());
- DialogFixture fixtureDialogOpen = new DialogFixture(robot,dialogOpen);
- JFileChooserFixture fileChooser = fixtureDialogOpen.fileChooser();
- fileChooser.selectFile(file);
- fileChooser.approve();
- }
-
- /**
- * Open file using GUI and fail if there is a problem
- * @param file event file
- */
- protected void openEventFileAndCheck(File file) {
- openEventFile(file);
- try {
- Dialog dialogInvalid = finder.find(DialogMatcher.withTitle("Invalid source"));
- fail("Failed to open event: found invalid source dialog");
- }
- catch (ComponentLookupException e) {
- // OK: no warning dialog!
- }
- }
-
- /**
- * Get a fixture for the event source tool bar.
- * @return
- */
- public JToolBarFixture findEventSourceToolBar() {
- return new JToolBarFixture(robot,"Atlantis event source toolbar");
- }
-
- /**
- * Get a fixture for the interactions tool bar.
- * @return
- */
- public JToolBarFixture findInteractionToolBar() {
- return new JToolBarFixture(robot,"Atlantis interaction toolbar");
- }
-}
diff --git a/graphics/AtlantisJava/test/src/guitest/AtlantisGuiTestCase.java b/graphics/AtlantisJava/test/src/guitest/AtlantisGuiTestCase.java
deleted file mode 100644
index 6c69d170207..00000000000
--- a/graphics/AtlantisJava/test/src/guitest/AtlantisGuiTestCase.java
+++ /dev/null
@@ -1,100 +0,0 @@
-package guitest;
-
-import java.awt.Frame;
-import java.io.ByteArrayOutputStream;
-import java.io.PrintStream;
-
-import org.fest.swing.core.BasicComponentFinder;
-import org.fest.swing.core.BasicRobot;
-import org.fest.swing.core.ComponentFinder;
-import org.fest.swing.core.Robot;
-import org.fest.swing.core.matcher.FrameMatcher;
-import org.fest.swing.edt.FailOnThreadViolationRepaintManager;
-import org.fest.swing.fixture.FrameFixture;
-import org.fest.swing.security.NoExitSecurityManagerInstaller;
-import org.junit.After;
-import org.junit.AfterClass;
-import org.junit.Before;
-import org.junit.BeforeClass;
-
-import testutils.AtlantisInit;
-import testutils.TeeOutputStream;
-import testutils.TestUtils;
-
-import atlantis.Atlantis;
-import atlantis.globals.AGlobals;
-
-public class AtlantisGuiTestCase {
- protected Robot robot;
- protected ComponentFinder finder;
- protected FrameFixture canvasFixture;
- protected AtlantisGUIFixture guiFixture;
- ByteArrayOutputStream stdOutCopy = new ByteArrayOutputStream();
- private static NoExitSecurityManagerInstaller noExitSecurityManagerInstaller;
-
- /** Time [ms] to pause at end of test for easier viewing */
- protected long pauseLength = 0;
-
- /**
- * Install NoExitSecurityManager because JUnit gets upset if the forked JVM exits
- */
- @BeforeClass
- public static void setUpOnce() {
- noExitSecurityManagerInstaller = NoExitSecurityManagerInstaller.installNoExitSecurityManager();
- }
-
- @AfterClass
- public static void tearDownOnce() {
- noExitSecurityManagerInstaller.uninstall();
- }
-
- @Before
- public void setUp() {
- startAtlantis();
- }
-
- protected void startAtlantis() {
- AtlantisInit.init();
- String atlantisHomeDir=AGlobals.instance().getHomeDirectory();
- String testEventsDir = atlantisHomeDir+"/test/events";
- TestUtils.setPropertyIfNotSet("atlantis.test.events",testEventsDir);
-
- // Omit this for now since Atlantis main does not do set-up on EDT
- // FailOnThreadViolationRepaintManager.install();
-
- finder = BasicComponentFinder.finderWithCurrentAwtHierarchy();
- robot = BasicRobot.robotWithCurrentAwtHierarchy();
-
- // Redirect standard output to ByteArrayOutputStream as well as normal System.out
- TeeOutputStream teeOut = new TeeOutputStream(System.out,stdOutCopy);
- System.setOut(new PrintStream(teeOut));
-
- // Launch Atlantis application
- String[] args = {"--debug","DEBUG"};
- Atlantis.main(args);
- // Don't use ACrashReporter to handle uncaught exceptions
- Thread.setDefaultUncaughtExceptionHandler(null);
-
- // Get fixtures for the GUI and Canvas
- guiFixture = AtlantisGUIFixture.getFixture(robot);
- FrameMatcher matcherCanvasTitle = FrameMatcher.withTitle("Atlantis Canvas");
- // Cannot cast to ACanvas because the ACanvas is actually a JPanel that creates its own
- // parent JFrame.
- Frame canvas = finder.find(matcherCanvasTitle);
- canvasFixture = new FrameFixture(robot,canvas);
- }
-
- @After
- public void tearDown() {
- pause(pauseLength);
- }
-
- /** Pause for a second so can see end result on screen */
- protected static void pause(long duration) {
- try {
- Thread.sleep(duration);
- } catch (InterruptedException e) {
- // allow to return if interrupted
- }
- }
-}
diff --git a/graphics/AtlantisJava/test/src/guitest/EnumeratorParameterTest.java b/graphics/AtlantisJava/test/src/guitest/EnumeratorParameterTest.java
deleted file mode 100644
index 5b9c2fb1c64..00000000000
--- a/graphics/AtlantisJava/test/src/guitest/EnumeratorParameterTest.java
+++ /dev/null
@@ -1,17 +0,0 @@
-package guitest;
-
-import org.junit.Test;
-import org.fest.swing.fixture.JComboBoxFixture;
-import org.fest.swing.fixture.JTableCellFixture;
-
-public class EnumeratorParameterTest extends AtlantisGuiTestCase {
-
- @Test
- public void test() {
- JTableCellFixture cell = guiFixture.findParameterCell("MuonDet","Track","Track Collections");
- cell.click();
- JComboBoxFixture comboBox = guiFixture.comboBox("Track Collections");
- String[] contents = comboBox.contents();
- comboBox.selectItem("All");
- }
-}
diff --git a/graphics/AtlantisJava/test/src/guitest/EventSourceToolBarTest.java b/graphics/AtlantisJava/test/src/guitest/EventSourceToolBarTest.java
deleted file mode 100644
index 15bb2f5481a..00000000000
--- a/graphics/AtlantisJava/test/src/guitest/EventSourceToolBarTest.java
+++ /dev/null
@@ -1,14 +0,0 @@
-package guitest;
-
-import org.fest.swing.fixture.JToolBarFixture;
-import org.junit.Test;
-
-public class EventSourceToolBarTest extends AtlantisGuiTestCase {
- @Test
- public void testEventSourceToolBar() {
- JToolBarFixture toolBarFixture = guiFixture.findEventSourceToolBar();
- toolBarFixture.radioButton("Sequential mode").click();
- toolBarFixture.radioButton("Loop mode").click();
- toolBarFixture.radioButton("Random mode").click();
- }
-}
diff --git a/graphics/AtlantisJava/test/src/guitest/InteractionToolBarTest.java b/graphics/AtlantisJava/test/src/guitest/InteractionToolBarTest.java
deleted file mode 100644
index ffe8a982a40..00000000000
--- a/graphics/AtlantisJava/test/src/guitest/InteractionToolBarTest.java
+++ /dev/null
@@ -1,48 +0,0 @@
-package guitest;
-
-import java.awt.event.KeyEvent;
-
-import org.fest.swing.fixture.JComboBoxFixture;
-import org.fest.swing.fixture.JTextComponentFixture;
-import org.fest.swing.fixture.JToolBarFixture;
-import org.junit.Test;
-
-import static guitest.AAssert.*;
-
-public class InteractionToolBarTest extends AtlantisGuiTestCase {
- @Test
- public void testInteractionToolBar() {
- JToolBarFixture toolBarFixture = guiFixture.findInteractionToolBar();
-
- toolBarFixture.toggleButton("ZMR").click();
-
- toolBarFixture.toggleButton("RubberBand").click();
- JComboBoxFixture rubberBandComboBox = toolBarFixture.comboBox();
- String[] listRubberBand = rubberBandComboBox.contents();
- String[] expectedRubberBand = {"RectangleYX","RotatedRectangle","Parallelogram",
- "Square","XSkew","YSkew","XSlice","YSlice"};
- assertArrayEqualsIgnoreOrder("Didn't find expected rubberband list",expectedRubberBand,listRubberBand);
-
- toolBarFixture.toggleButton("Pick").click();
- JComboBoxFixture pickComboBox = toolBarFixture.comboBox();
- String[] listPick = pickComboBox.contents();
- String[] expectedPick = {"Event Data","Detectors"};
- assertArrayEqualsIgnoreOrder("Didn't find expected pick list",expectedPick,listPick);
-
- toolBarFixture.toggleButton("SyncCursors").click();
-
- toolBarFixture.toggleButton("FishEye").click();
- JTextComponentFixture textBox = toolBarFixture.textBox();
- textBox.setText(""); // deleteText() does not work
- textBox.enterText("5.0"); // this does not press "enter", so...
- textBox.pressAndReleaseKeys(KeyEvent.VK_ENTER); // we do it here
- toolBarFixture.checkBox().click(); // turn off fish-eye
- toolBarFixture.checkBox().click(); // turn it on again
-
- toolBarFixture.toggleButton("Clock").click();
- toolBarFixture.checkBox().click(); // turn on clock transformation
- toolBarFixture.checkBox().click(); // turn it on again
-
- toolBarFixture.toggleButton("Scale").click();
- }
-}
diff --git a/graphics/AtlantisJava/test/src/guitest/LoadEventFailureTest.java b/graphics/AtlantisJava/test/src/guitest/LoadEventFailureTest.java
deleted file mode 100644
index 48e2cabb35b..00000000000
--- a/graphics/AtlantisJava/test/src/guitest/LoadEventFailureTest.java
+++ /dev/null
@@ -1,22 +0,0 @@
-package guitest;
-
-import java.awt.Dialog;
-import java.io.File;
-import org.junit.Test;
-import static org.junit.Assert.*;
-import org.fest.swing.core.matcher.DialogMatcher;
-import org.fest.swing.exception.ComponentLookupException;
-
-public class LoadEventFailureTest extends AtlantisGuiTestCase {
- @Test
- public void loadEvent() {
- guiFixture.openEventFile(new File("/nosuchfile"));
- try {
- Dialog dialogInvalid = finder.find(DialogMatcher.withTitle("Invalid source"));
- // OK, correctly failed to open file
- }
- catch (ComponentLookupException e) {
- fail("Did not find invalid source dialog when opening non-existent event file");
- }
- }
-}
diff --git a/graphics/AtlantisJava/test/src/guitest/LoadEventTest.java b/graphics/AtlantisJava/test/src/guitest/LoadEventTest.java
deleted file mode 100644
index 7bfcaef27e6..00000000000
--- a/graphics/AtlantisJava/test/src/guitest/LoadEventTest.java
+++ /dev/null
@@ -1,25 +0,0 @@
-package guitest;
-
-import static org.junit.Assert.*;
-
-import java.awt.Dialog;
-import java.io.File;
-
-import org.fest.swing.core.matcher.DialogMatcher;
-import org.fest.swing.exception.ComponentLookupException;
-import org.junit.Test;
-
-public class LoadEventTest extends AtlantisGuiTestCase {
- @Test
- public void loadEvent() {
- String eventsDirectory = System.getProperty("atlantis.test.events");
- guiFixture.openEventFile(new File(eventsDirectory,"muonCollections.xml"));
- try {
- Dialog dialogInvalid = finder.find(DialogMatcher.withTitle("Invalid source"));
- fail("Failed to open event: found invalid source dialog");
- }
- catch (ComponentLookupException e) {
- // OK
- }
- }
-}
diff --git a/graphics/AtlantisJava/test/src/guitest/LoadEventWithInvalidRecVertexDataTest.java b/graphics/AtlantisJava/test/src/guitest/LoadEventWithInvalidRecVertexDataTest.java
deleted file mode 100644
index 7cb70d7e2c5..00000000000
--- a/graphics/AtlantisJava/test/src/guitest/LoadEventWithInvalidRecVertexDataTest.java
+++ /dev/null
@@ -1,29 +0,0 @@
-package guitest;
-
-import static org.junit.Assert.*;
-
-import java.awt.Dialog;
-import java.io.File;
-
-import org.fest.swing.core.matcher.DialogMatcher;
-import org.fest.swing.exception.ComponentLookupException;
-import org.junit.Test;
-
-public class LoadEventWithInvalidRecVertexDataTest extends AtlantisGuiTestCase {
- @Test
- public void loadEvent() {
- String output = stdOutCopy.toString();
- assertTrue("Output does not contain \"Atlantis Ready\"",output.contains("Atlantis Ready"));
- String eventsDirectory = System.getProperty("atlantis.test.events");
- guiFixture.openEventFile(new File(eventsDirectory,"rvxInconsistentEvent.xml"));
- try {
- Dialog dialogInvalid = finder.find(DialogMatcher.withTitle("Invalid source"));
- fail("Failed to open event: found invalid source dialog");
- }
- catch (ComponentLookupException e) {
- // OK
- }
- output = stdOutCopy.toString();
- assertTrue("Failed to detect inconsistent track numbers",output.contains("RVx: numbers of tracks are inconsistent."));
- }
-}
diff --git a/graphics/AtlantisJava/test/src/guitest/LoadEventWithValidRecVertexDataTest.java b/graphics/AtlantisJava/test/src/guitest/LoadEventWithValidRecVertexDataTest.java
deleted file mode 100644
index 846af19bf93..00000000000
--- a/graphics/AtlantisJava/test/src/guitest/LoadEventWithValidRecVertexDataTest.java
+++ /dev/null
@@ -1,29 +0,0 @@
-package guitest;
-
-import static org.junit.Assert.*;
-
-import java.awt.Dialog;
-import java.io.File;
-
-import org.fest.swing.core.matcher.DialogMatcher;
-import org.fest.swing.exception.ComponentLookupException;
-import org.junit.Test;
-
-public class LoadEventWithValidRecVertexDataTest extends AtlantisGuiTestCase {
- @Test
- public void loadEvent() {
- String output = stdOutCopy.toString();
- assertTrue("Output does not contain \"Atlantis Ready\"",output.contains("Atlantis Ready"));
- String eventsDirectory = System.getProperty("atlantis.test.events");
- guiFixture.openEventFile(new File(eventsDirectory,"rvxEvent.xml"));
- try {
- Dialog dialogInvalid = finder.find(DialogMatcher.withTitle("Invalid source"));
- fail("Failed to open event: found invalid source dialog");
- }
- catch (ComponentLookupException e) {
- // OK
- }
- output = stdOutCopy.toString();
- assertFalse("Inconsistent data incorrectly detected",output.contains("RVx: numbers of tracks are inconsistent."));
- }
-}
diff --git a/graphics/AtlantisJava/test/src/guitest/LoadEventsManyTimesTest.java b/graphics/AtlantisJava/test/src/guitest/LoadEventsManyTimesTest.java
deleted file mode 100644
index d395260b2f4..00000000000
--- a/graphics/AtlantisJava/test/src/guitest/LoadEventsManyTimesTest.java
+++ /dev/null
@@ -1,31 +0,0 @@
-package guitest;
-
-import java.io.File;
-import org.junit.Test;
-import org.fest.swing.fixture.JButtonFixture;
-import org.fest.swing.fixture.JToolBarFixture;
-
-public class LoadEventsManyTimesTest extends AtlantisGuiTestCase {
-
- private static final int numEvents = 9;
- private static final int numRepeats = 3;
-
- @Test(timeout=45000)
- public void readEvents() {
- String eventsDirectory = System.getProperty("atlantis.test.events");
- guiFixture.openEventFileAndCheck(new File(eventsDirectory,"masterclassMuonEvents.zip"));
- JToolBarFixture toolBarFixture = guiFixture.findEventSourceToolBar();
- JButtonFixture nextButton = toolBarFixture.button("nextButton");
- JButtonFixture previousButton = toolBarFixture.button("previousButton");
- for (int i=0; i<numRepeats; i++) {
- for (int iEvent=0; iEvent<(numEvents-1); iEvent++) {
- System.out.println("Click number "+iEvent);
- nextButton.click();
- }
- for (int iEvent=0; iEvent<(numEvents-1); iEvent++) {
- System.out.println("Click number "+iEvent);
- previousButton.click();
- }
- }
- }
-}
diff --git a/graphics/AtlantisJava/test/src/guitest/MuonTrackCollectionsEmptyTest.java b/graphics/AtlantisJava/test/src/guitest/MuonTrackCollectionsEmptyTest.java
deleted file mode 100644
index dddeb873b61..00000000000
--- a/graphics/AtlantisJava/test/src/guitest/MuonTrackCollectionsEmptyTest.java
+++ /dev/null
@@ -1,39 +0,0 @@
-package guitest;
-
-import java.io.File;
-import org.junit.Test;
-import org.fest.swing.fixture.JComboBoxFixture;
-import org.fest.swing.fixture.JTableCellFixture;
-import static guitest.AAssert.*;
-
-/**
- * Check list of muon track collections for Trac bug #507
- * Should be empty in empty event!
- * @author waugh
- *
- */
-public class MuonTrackCollectionsEmptyTest extends AtlantisGuiTestCase {
- @Test
- public void loadEvents() {
- String eventsDirectory = System.getProperty("atlantis.test.events");
- guiFixture.openEventFileAndCheck(new File(eventsDirectory,"muonCollections.xml"));
- checkMuonTrackCollections("ConvertedMBoyTracks",
- "ConvertedMBoyMuonSpectroOnlyTracks",
- "All");
- guiFixture.openEventFileAndCheck(new File(eventsDirectory,"emptyEvent.xml"));
- checkMuonTrackCollections("None");
- }
-
- private void checkMuonTrackCollections(String... expected) {
- String[] contents = getMuonTrackCollections();
- assertArrayEqualsIgnoreOrder("Didn't find expected collections",expected,contents);
- }
-
- private String[] getMuonTrackCollections() {
- JTableCellFixture cell = guiFixture.findParameterCell("MuonDet","Track","Track Collections");
- cell.click();
- JComboBoxFixture comboBox = guiFixture.comboBox("Track Collections");
- String[] contents = comboBox.contents();
- return contents;
- }
-}
diff --git a/graphics/AtlantisJava/test/src/guitest/MuonTrackCollectionsTest.java b/graphics/AtlantisJava/test/src/guitest/MuonTrackCollectionsTest.java
deleted file mode 100644
index 8ee5814913a..00000000000
--- a/graphics/AtlantisJava/test/src/guitest/MuonTrackCollectionsTest.java
+++ /dev/null
@@ -1,40 +0,0 @@
-package guitest;
-
-import java.io.File;
-import org.junit.Test;
-import org.fest.swing.fixture.JComboBoxFixture;
-import org.fest.swing.fixture.JTableCellFixture;
-import static guitest.AAssert.*;
-
-/**
- * Check list of muon track collections for Trac bug #507
- * @author waugh
- *
- */
-public class MuonTrackCollectionsTest extends AtlantisGuiTestCase {
- @Test
- public void loadEvents() {
- String eventsDirectory = System.getProperty("atlantis.test.events");
- guiFixture.openEventFileAndCheck(new File(eventsDirectory,"muonCollections.xml"));
- checkMuonTrackCollections("ConvertedMBoyTracks",
- "ConvertedMBoyMuonSpectroOnlyTracks",
- "All");
- guiFixture.openEventFileAndCheck(new File(eventsDirectory,"muonCollections2.xml"));
- checkMuonTrackCollections("ConvertedMBoyTracks",
- "ConvertedMuIdCBTracks",
- "All");
- }
-
- private void checkMuonTrackCollections(String... expected) {
- String[] contents = getMuonTrackCollections();
- assertArrayEqualsIgnoreOrder("Didn't find expected collections",expected,contents);
- }
-
- private String[] getMuonTrackCollections() {
- JTableCellFixture cell = guiFixture.findParameterCell("MuonDet","Track","Track Collections");
- cell.click();
- JComboBoxFixture comboBox = guiFixture.comboBox("Track Collections");
- String[] contents = comboBox.contents();
- return contents;
- }
-}
diff --git a/graphics/AtlantisJava/test/src/guitest/OverlayTest.java b/graphics/AtlantisJava/test/src/guitest/OverlayTest.java
deleted file mode 100644
index d35ca958746..00000000000
--- a/graphics/AtlantisJava/test/src/guitest/OverlayTest.java
+++ /dev/null
@@ -1,27 +0,0 @@
-package guitest;
-
-import org.junit.Test;
-import org.fest.swing.data.TableCellByColumnId;
-import org.fest.swing.fixture.JTableCellFixture;
-import org.fest.swing.fixture.JTableFixture;
-
-public class OverlayTest extends AtlantisGuiTestCase {
-
- @Test
- public void testOverlay() {
- JTableFixture table = guiFixture.findParametersTable("Appearance","Logo");
- int row = 0;
- JTableCellFixture check = table.cell(TableCellByColumnId.row(row).columnId("Name"));
- //check the box to show logo
- check.click();
- //change the x position
- JTableCellFixture logox = guiFixture.findParameterCell("Appearance","Logo", "Logo X");
- logox.enterValue("0.5\n");
- //resize
- JTableCellFixture size = guiFixture.findParameterCell("Appearance","Logo", "Logo Size");
- size.enterValue("0.7\n");
- size.click();
- //now uncheck the box
- check.click();
- }
-}
diff --git a/graphics/AtlantisJava/test/src/guitest/ProjectionsTest.java b/graphics/AtlantisJava/test/src/guitest/ProjectionsTest.java
deleted file mode 100644
index 3b32476ab89..00000000000
--- a/graphics/AtlantisJava/test/src/guitest/ProjectionsTest.java
+++ /dev/null
@@ -1,24 +0,0 @@
-package guitest;
-
-import org.fest.swing.fixture.JPanelFixture;
-import org.junit.Test;
-
-import static atlantis.utils.AMath.*; // for Greek letters
-
-public class ProjectionsTest extends AtlantisGuiTestCase {
- @Test
- public void testWindowControls() {
- JPanelFixture windowControls = guiFixture.panel("windowControl");
- windowControls.label("W").click();
- guiFixture.findParametersTable("Projection","YX").click();
- guiFixture.findParametersTable("Projection",PHI+ETA).click();
- guiFixture.findParametersTable("Projection",RHO+"Z").click();
- guiFixture.findParametersTable("Projection",PHI+RHO).click();
- guiFixture.findParametersTable("Projection",PHI+"Z").click();
- guiFixture.findParametersTable("Projection","X'Z").click();
- guiFixture.findParametersTable("Projection","Y'Z").click();
- guiFixture.findParametersTable("Projection","3DBox").click();
- guiFixture.findParametersTable("Projection","LegoPlot").click();
- guiFixture.findParametersTable("Projection","Event Info").click();
- }
-}
diff --git a/graphics/AtlantisJava/test/src/guitest/ReadNextAndPreviousEventTest.java b/graphics/AtlantisJava/test/src/guitest/ReadNextAndPreviousEventTest.java
deleted file mode 100644
index 4849224a4a4..00000000000
--- a/graphics/AtlantisJava/test/src/guitest/ReadNextAndPreviousEventTest.java
+++ /dev/null
@@ -1,27 +0,0 @@
-package guitest;
-
-import java.awt.Dialog;
-
-import org.fest.swing.core.matcher.DialogMatcher;
-import org.fest.swing.core.matcher.JButtonMatcher;
-import org.fest.swing.fixture.DialogFixture;
-import org.fest.swing.fixture.JButtonFixture;
-import org.fest.swing.fixture.JToolBarFixture;
-import org.junit.Test;
-
-public class ReadNextAndPreviousEventTest extends AtlantisGuiTestCase {
-
- @Test
- public void readNextThenPreviousEvent() {
- JToolBarFixture toolBarFixture = guiFixture.findEventSourceToolBar();
- JButtonFixture nextButton = toolBarFixture.button("nextButton");
- JButtonFixture previousButton = toolBarFixture.button("previousButton");
- nextButton.click();
- previousButton.click();
- guiFixture.menuItemWithPath("File", "Exit").click();
- DialogMatcher matcherConfirmExit = DialogMatcher.withTitle("Exit Atlantis");
- Dialog dialogConfirmExit = finder.find(matcherConfirmExit);
- DialogFixture fixtureDialogConfirmExit = new DialogFixture(robot,dialogConfirmExit);
- // fixtureDialogConfirmExit.button(JButtonMatcher.withText("Yes")).click();
- }
-}
diff --git a/graphics/AtlantisJava/test/src/guitest/StartAndExitTest.java b/graphics/AtlantisJava/test/src/guitest/StartAndExitTest.java
deleted file mode 100644
index ec93dce67c4..00000000000
--- a/graphics/AtlantisJava/test/src/guitest/StartAndExitTest.java
+++ /dev/null
@@ -1,19 +0,0 @@
-package guitest;
-
-import java.awt.Dialog;
-import org.junit.Test;
-import org.fest.swing.core.matcher.DialogMatcher;
-import org.fest.swing.core.matcher.JButtonMatcher;
-import org.fest.swing.fixture.DialogFixture;
-
-public class StartAndExitTest extends AtlantisGuiTestCase {
-
- @Test
- public void atlantisStarts() {
- guiFixture.menuItemWithPath("File", "Exit").click();
- DialogMatcher matcherConfirmExit = DialogMatcher.withTitle("Exit Atlantis");
- Dialog dialogConfirmExit = finder.find(matcherConfirmExit);
- DialogFixture fixtureDialogConfirmExit = new DialogFixture(robot,dialogConfirmExit);
- fixtureDialogConfirmExit.button(JButtonMatcher.withText("Yes")).click();
- }
-}
diff --git a/graphics/AtlantisJava/test/src/guitest/TabsTest.java b/graphics/AtlantisJava/test/src/guitest/TabsTest.java
deleted file mode 100644
index 11ba9148e3b..00000000000
--- a/graphics/AtlantisJava/test/src/guitest/TabsTest.java
+++ /dev/null
@@ -1,23 +0,0 @@
-package guitest;
-
-import org.junit.Test;
-import org.fest.swing.fixture.JTableFixture;
-
-public class TabsTest extends AtlantisGuiTestCase {
-
- @Test
- public void testTabs() {
- JTableFixture table = guiFixture.findParametersTable("MuonDet","Segment");
- // Click on cell: does nothing but checks we have found required cell
- table.cell(table.cell("Segment Collections")).click();
- guiFixture.findParametersTable("Projection","YX");
- guiFixture.findParametersTable("Data","Data");
- guiFixture.findParametersTable("Cuts","Calo");
- guiFixture.findParametersTable("InDet","SpacePoint");
- guiFixture.findParametersTable("Calo","HEC");
- guiFixture.findParametersTable("MuonDet","MDT");
- guiFixture.findParametersTable("Objects","Muon");
- guiFixture.findParametersTable("Detector","Geo");
- guiFixture.findParametersTable("Appearance","Logo");
- }
-}
diff --git a/graphics/AtlantisJava/test/src/testutils/AtlantisInit.java b/graphics/AtlantisJava/test/src/testutils/AtlantisInit.java
deleted file mode 100644
index d1732aec9f8..00000000000
--- a/graphics/AtlantisJava/test/src/testutils/AtlantisInit.java
+++ /dev/null
@@ -1,20 +0,0 @@
-package testutils;
-
-import atlantis.Atlantis;
-import atlantis.globals.AGlobals;
-
-/**
- * Do Atlantis initialization for tests: things that would be set up by main() in the
- * full application, and require access to protected Atlantis members.
- *
- * @author waugh
- *
- */
-public class AtlantisInit extends Atlantis {
-
- public static void init() {
- String homeDirectory = Atlantis.getHomeDirectory();
- AGlobals.instance().setHomeDirectory(homeDirectory);
- }
-
-}
diff --git a/graphics/AtlantisJava/test/src/testutils/TeeOutputStream.java b/graphics/AtlantisJava/test/src/testutils/TeeOutputStream.java
deleted file mode 100644
index e490cc19821..00000000000
--- a/graphics/AtlantisJava/test/src/testutils/TeeOutputStream.java
+++ /dev/null
@@ -1,34 +0,0 @@
-package testutils;
-
-import java.io.IOException;
-import java.io.OutputStream;
-import java.util.ArrayList;
-import java.util.List;
-
-/**
- * Wraps any number of OutputStreams and directs input to all of them.
- * @author waugh
- *
- */
-public class TeeOutputStream extends OutputStream {
- private List<OutputStream> streams;
-
- /**
- * Create a TeeOutputStream that writes to the given OutputStreams.
- * @param outputStreams the OutputStreams to be wrapped
- */
- public TeeOutputStream(OutputStream... outputStreams) {
- streams = new ArrayList<OutputStream>();
- for (OutputStream stream : outputStreams) {
- streams.add(stream);
- }
- }
-
- @Override
- public void write(int b) throws IOException {
- for (OutputStream stream : streams) {
- stream.write(b);
- }
- }
-
-}
diff --git a/graphics/AtlantisJava/test/src/testutils/TestUtils.java b/graphics/AtlantisJava/test/src/testutils/TestUtils.java
deleted file mode 100644
index d9b58032914..00000000000
--- a/graphics/AtlantisJava/test/src/testutils/TestUtils.java
+++ /dev/null
@@ -1,17 +0,0 @@
-package testutils;
-
-public class TestUtils {
-
- /**
- * Set system property if it doesn't already have a value.
- * Useful in providing sensible defaults for properties set in build file when
- * using Ant.
- * @param key
- * @param value
- */
- public static void setPropertyIfNotSet(String key, String value) {
- String old = System.getProperty(key);
- if (old==null) System.setProperty(key,value);
- }
-
-}
--
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