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.gitlab-ci.yml

+22 −5
Original line number Original line Diff line number Diff line 
variables:

  CI_JULIA_CACHE_DIR: ${CI_PROJECT_DIR}/julia_pkg

  JULIA_DEPOT_PATH: ${CI_JULIA_CACHE_DIR}

cache:

  key:

    files:

      - Project.toml

      - docs/Project.toml

    prefix: ${CI_JOB_NAME}

  paths:

    - ${CI_JULIA_CACHE_DIR}

.script:

.script:

  script:

  script:

    - |

    - |
@@ -21,28 +32,34 @@ Julia 1.10: 
  extends:

  extends:

    - .script

    - .script

    - .coverage

    - .coverage

Julia 1.11:

  image: julia:1.11

  extends:

    - .script

    - .coverage

pages:

pages:

  image: julia:1.10

  image: julia:1.11

  stage: deploy

  stage: deploy

  script:

  script:

    - |

    - |

      julia --project=docs -e '

      julia --project=docs -e '

        using Pkg

        using Pkg

        @info "Pkg status before dev" Pkg.status() pwd()

        Pkg.develop(PackageSpec(path=pwd()))

        Pkg.develop(PackageSpec(path=pwd()))

        Pkg.instantiate()

        Pkg.instantiate()

        using Documenter: doctest

        @info "Pkg status after dev" Pkg.status()

        using PSBoardDataBase

        doctest(PSBoardDataBase)

        include("docs/make.jl")'

        include("docs/make.jl")'

    - mkdir -p public

    - mkdir -p public

    - mv docs/build public/dev

    - mv docs/build public/dev

    - ls docs/src -R

    - mv docs/src/assets/*.html public

  artifacts:

  artifacts:

    paths:

    paths:

      - public

      - public

  only:

  only:

    - main

    - main

CompatHelper:

CompatHelper:

  image: julia:1.10 # Set to the Julia version you want to use

  image: julia:1.11 # Set to the Julia version you want to use

  stage: test # You can place this in any stage that makes sense for your setup

  stage: test # You can place this in any stage that makes sense for your setup

  only:

  only:

    - schedules

    - schedules

CHANGELOG.md

+32 −1
Original line number Original line Diff line number Diff line
@@ -7,6 +7,36 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 




## [Unreleased]

## [Unreleased]





## [0.2.0] - 2024-10-23



- Julia v1.11 was released and v1.10 is new LTS

- This package will support both of them



### Added



- Add `versions` table to store version information of converter(this software)

- Add `skew` column to `qaqc_positions` table

- Add `DownloadCSVs` module and functions which downloads the latest CSVs from Google sheets

- Add `ClockParser` module and `get_skew` function

- Add `lvds_tx_skew` column to `qaqc_single_run_result` table and related functions in `import_data.jl`

- Add example Pluto notebook which plots clock skew histogram

- Add `count_riseup` to count rise up in clock result

- Add example app using Pluto

- Add `DispatchChecker` module

- Add `is_dispatchable` which checks given PSBoard is ready to dispatch

- Add `interactive_dispatch_checker` which provide interactive session for QAQC



### Changed



- Set download functions in `DownloadCSVs` as default CSV locations in `create_database_from_exported_csvs`

- Replaced CSV files used in test to newly add `DownloadCSVs` functions

- `create_database_from_exported_csvs` now requires `slavelog_dir` to get skew from slave logs

- CI runs on v1.10 and v1.11



### Deleted



- CSV files manually exported from Google Sheets



## [0.1.0]

## [0.1.0]





### Added

### Added
@@ -15,5 +45,6 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 
- Docs on the database and example of querying the database.

- Docs on the database and example of querying the database.

- Docs on the internal (Julia implementation)

- Docs on the internal (Julia implementation)





[unreleased]: https://gitlab.cern.ch/wotsubo/PSBoardDataBase/~/compare/v0.1.0...main

[unreleased]: https://gitlab.cern.ch/wotsubo/PSBoardDataBase/-/compare/v0.2.0...main

[0.2.0]: https://gitlab.cern.ch/wotsubo/PSBoardDataBase/~/compare/v0.1.0...v0.2.0

[0.1.0]: https://gitlab.cern.ch/wotsubo/PSBoardDataBase/~/tags/v0.1.0
 
[0.1.0]: https://gitlab.cern.ch/wotsubo/PSBoardDataBase/~/tags/v0.1.0

Project.toml

+4 −1
Original line number Original line Diff line number Diff line 
name = "PSBoardDataBase"

name = "PSBoardDataBase"

uuid = "779f6a9c-59fa-41f1-8ed1-e9a91eccb2f5"

uuid = "779f6a9c-59fa-41f1-8ed1-e9a91eccb2f5"

authors = ["Wataru Otsubo <wotsubo@icepp.s.u-tokyo.ac.jp>"]

authors = ["Wataru Otsubo <wotsubo@icepp.s.u-tokyo.ac.jp>"]

version = "0.1.0"

version = "0.2.0"





[deps]

[deps]

CSV = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b"

CSV = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b"
@@ -9,6 +9,8 @@ DBInterface = "a10d1c49-ce27-4219-8d33-6db1a4562965" 
DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"

DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"

Dates = "ade2ca70-3891-5945-98fb-dc099432e06a"

Dates = "ade2ca70-3891-5945-98fb-dc099432e06a"

Documenter = "e30172f5-a6a5-5a46-863b-614d45cd2de4"

Documenter = "e30172f5-a6a5-5a46-863b-614d45cd2de4"

Downloads = "f43a241f-c20a-4ad4-852c-f6b1247861c6"

Printf = "de0858da-6303-5e67-8744-51eddeeeb8d7"

SQLite = "0aa819cd-b072-5ff4-a722-6bc24af294d9"

SQLite = "0aa819cd-b072-5ff4-a722-6bc24af294d9"

Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c"

Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c"
@@ -23,6 +25,7 @@ CSV = "0.10" 
DBInterface = "2"

DBInterface = "2"

DataFrames = "1"

DataFrames = "1"

Documenter = "1"

Documenter = "1"

Downloads = "1"

SQLite = "1"

SQLite = "1"

Tables = "1"

Tables = "1"

README.md

+4 −0
Original line number Original line Diff line number Diff line
@@ -8,3 +8,7 @@ PS Boardに関する(特にQAQCの結果に関する)データベース。 
[ドキュメント(主にデータベースを扱うパッケージに関する)](http://psboard-database.docs.cern.ch/dev/)

[ドキュメント(主にデータベースを扱うパッケージに関する)](http://psboard-database.docs.cern.ch/dev/)





PS Board QAQCに関しては[こちら](https://gitlab.cern.ch/dhashimo/PS_Board_QAQC)

PS Board QAQCに関しては[こちら](https://gitlab.cern.ch/dhashimo/PS_Board_QAQC)



解析結果の例

- 結果一覧閲覧用簡易アプリケーション: https://psboard-database.docs.cern.ch/get_results.html

- skewを複数回測定した個体に関する統計調査: https://psboard-database.docs.cern.ch/skew_stats.html

docs/Manifest.toml

+14 −14
Original line number Original line Diff line number Diff line
@@ -2,7 +2,7 @@ 




julia_version = "1.10.5"

julia_version = "1.10.5"

manifest_format = "2.0"

manifest_format = "2.0"

project_hash = "ee8312616d887d85f460636f9710488be4490a26"

project_hash = "7a44705ce6faa370eeecb49dce927460b0d7fd20"





[[deps.ANSIColoredPrinters]]

[[deps.ANSIColoredPrinters]]

git-tree-sha1 = "574baf8110975760d391c710b6341da1afa48d8c"

git-tree-sha1 = "574baf8110975760d391c710b6341da1afa48d8c"
@@ -67,10 +67,10 @@ uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" 
version = "1.16.0"

version = "1.16.0"





[[deps.DataFrames]]

[[deps.DataFrames]]

deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"]

deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"]

git-tree-sha1 = "04c738083f29f86e62c8afc341f0967d8717bdb8"

git-tree-sha1 = "fb61b4812c49343d7ef0b533ba982c46021938a6"

uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"

uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"

version = "1.6.1"

version = "1.7.0"





[[deps.DataStructures]]

[[deps.DataStructures]]

deps = ["Compat", "InteractiveUtils", "OrderedCollections"]

deps = ["Compat", "InteractiveUtils", "OrderedCollections"]
@@ -154,9 +154,9 @@ version = "1.3.1" 




[[deps.Git_jll]]

[[deps.Git_jll]]

deps = ["Artifacts", "Expat_jll", "JLLWrappers", "LibCURL_jll", "Libdl", "Libiconv_jll", "OpenSSL_jll", "PCRE2_jll", "Zlib_jll"]

deps = ["Artifacts", "Expat_jll", "JLLWrappers", "LibCURL_jll", "Libdl", "Libiconv_jll", "OpenSSL_jll", "PCRE2_jll", "Zlib_jll"]

git-tree-sha1 = "d18fb8a1f3609361ebda9bf029b60fd0f120c809"

git-tree-sha1 = "ea372033d09e4552a04fd38361cd019f9003f4f4"

uuid = "f8c6e375-362e-5223-8a59-34ff63f689eb"

uuid = "f8c6e375-362e-5223-8a59-34ff63f689eb"

version = "2.44.0+2"

version = "2.46.2+0"





[[deps.IOCapture]]

[[deps.IOCapture]]

deps = ["Logging", "Random"]

deps = ["Logging", "Random"]
@@ -292,9 +292,9 @@ version = "0.3.23+4" 




[[deps.OpenSSL_jll]]

[[deps.OpenSSL_jll]]

deps = ["Artifacts", "JLLWrappers", "Libdl"]

deps = ["Artifacts", "JLLWrappers", "Libdl"]

git-tree-sha1 = "1b35263570443fdd9e76c76b7062116e2f374ab8"

git-tree-sha1 = "7493f61f55a6cce7325f197443aa80d32554ba10"

uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95"

uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95"

version = "3.0.15+0"

version = "3.0.15+1"





[[deps.OrderedCollections]]

[[deps.OrderedCollections]]

git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5"

git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5"
@@ -307,8 +307,8 @@ uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" 
version = "10.42.0+1"

version = "10.42.0+1"





[[deps.PSBoardDataBase]]

[[deps.PSBoardDataBase]]

deps = ["CSV", "DBInterface", "DataFrames", "Dates", "Documenter", "SQLite", "Tables"]

deps = ["CSV", "DBInterface", "DataFrames", "Dates", "Documenter", "Downloads", "SQLite", "Tables"]

path = ".."

path = "/home/qwjyh/Documents/school/lab/PSBoard_QAQC/PSBoardDataBase"

uuid = "779f6a9c-59fa-41f1-8ed1-e9a91eccb2f5"

uuid = "779f6a9c-59fa-41f1-8ed1-e9a91eccb2f5"

version = "0.1.0"

version = "0.1.0"

weakdeps = ["InteractiveUtils"]

weakdeps = ["InteractiveUtils"]
@@ -347,9 +347,9 @@ version = "1.4.3" 




[[deps.PrettyTables]]

[[deps.PrettyTables]]

deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"]

deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"]

git-tree-sha1 = "66b20dd35966a748321d3b2537c4584cf40387c7"

git-tree-sha1 = "1101cd475833706e4d0e7b122218257178f48f34"

uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d"

uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d"

version = "2.3.2"

version = "2.4.0"





[[deps.Printf]]

[[deps.Printf]]

deps = ["Unicode"]

deps = ["Unicode"]
@@ -420,9 +420,9 @@ version = "1.10.0" 




[[deps.StringManipulation]]

[[deps.StringManipulation]]

deps = ["PrecompileTools"]

deps = ["PrecompileTools"]

git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5"

git-tree-sha1 = "a6b1675a536c5ad1a60e5a5153e1fee12eb146e3"

uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e"

uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e"

version = "0.3.4"

version = "0.4.0"





[[deps.SuiteSparse_jll]]

[[deps.SuiteSparse_jll]]

deps = ["Artifacts", "Libdl", "libblastrampoline_jll"]

deps = ["Artifacts", "Libdl", "libblastrampoline_jll"]

docs/Project.toml

+2 −0
Original line number Original line Diff line number Diff line 
[deps]

[deps]

CSV = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b"

DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"

DocInventories = "43dc2714-ed3b-44b5-b226-857eda1aa7de"

DocInventories = "43dc2714-ed3b-44b5-b226-857eda1aa7de"

Documenter = "e30172f5-a6a5-5a46-863b-614d45cd2de4"

Documenter = "e30172f5-a6a5-5a46-863b-614d45cd2de4"

DocumenterInterLinks = "d12716ef-a0f6-4df4-a9f1-a5a34e75c656"

DocumenterInterLinks = "d12716ef-a0f6-4df4-a9f1-a5a34e75c656"

docs/src/about_software.md

+94 −1
Original line number Original line Diff line number Diff line 
```@meta

```@meta

CurrentModule = PSBoardDataBase

CurrentModule = PSBoardDataBase

```

```



# Index



```@contents

Pages = ["about_software.md"]

Depth = 4

```



# このリポジトリのソフトウェアについての説明

# このリポジトリのソフトウェアについての説明





このリポジトリにあるのは、JATHub masterのログファイル、及びGoogle SheetsからエクスポートしたCSVファイルからデータベースを作成するためのコードである。

このリポジトリにあるのは、JATHub masterのログファイル、及びGoogle SheetsからエクスポートしたCSVファイルからデータベースを作成するためのコードである。

メインの関数は[`create_database_from_exported_csvs`](@ref)である。

メインの関数は[`create_database_from_exported_csvs`](@ref)である。





!!! info

    **TLDR**;

    データベースがほしいときは_Masterのログ_と_Slaveのログ_を用意して、[`create_database_from_exported_csvs`](@ref)

    ```julia

    create_database_from_exported_csvs(

        "database_name.db";

        masterlog_dir = "dir/to/master/logs",

        slavelog_dir = "dir/to/slave/logs"

    )

    ```



## 動かし方

## 動かし方

[Julia](https://julialang.org)は[juliaup](https://github.com/JuliaLang/juliaup)でインストールする。

[Julia](https://julialang.org)は[juliaup](https://github.com/JuliaLang/juliaup)でインストールする。

リポジトリのルート(`Project.toml`がある)で

リポジトリのルート(`Project.toml`がある)で
@@ -25,10 +44,66 @@ backspaceでjulianモードに戻り(左側が`julia>`になってる)、`using 
# テストについて

# テストについて





テストでは実際にデータベースを作成している。

テストでは実際にデータベースを作成している。

デフォルトでは全部は実行しないが、master log fileをおき、かつ環境変数`LOCAL_TEST`を設定することで、master log fileが必要な工程まで含めて実行できる。[^1]

デフォルトでは全部は実行しないが、master logとslave logをおき、かつ環境変数`LOCAL_TEST`を設定することで、すべての工程を実行できる。[^1]

用意するものの詳細は下に書いてある。



Pkgモード(`]`を押す)で`test`とうつと実行できる。

環境変数の設定は`ENV["LOCAL_TEST"] = "1"`とでも書く。

自動でsqlite browserを開く設定になっている。





[^1]: master log fileはgitには入れたくないので、このような形態をとっている。

[^1]: master log fileはgitには入れたくないので、このような形態をとっている。





## Master logを用意する



[`start-shiftwork`](https://gitlab.cern.ch/dhashimo/PS_Board_QAQC/-/blob/master/Software_Test/ShiftWorks/script/start-shiftwork?ref_type=heads)が生成するログファイル(同じリポジトリの`../log`のところ、通常はJATHub Masterにある)を`test/input/`以下に置く。

以下のようにする。



```sh

$ tree -L 2 test/input/

test/input/

└── log

    ├── 100.log

    ├── 101_long.log

    ├── 102_long.log

    ├── 103.log

    ├── 104_long.log

    ├── 105.log

    ├── 106_long.log

    ├── 107.log

    ├── 108_long.log

    ├── 109_long.log

    ├── 110.log

...

```



## Slave logを用意する



同様にJATHub slaveで作られるログも用意する。

これはskewを抽出するのに使われる。

最悪なくてもいいのでそのときは空のディレクトリを関数に渡す。



```sh

 tree -L 2 test/input/slavelogs/ | head -n 10

test/input/slavelogs/

└── main

    ├── 101_28_longrun.txt

    ├── 101_29.txt

    ├── 101_29_clk.txt

    ├── 103_28_longrun.txt

    ├── 103_29.txt

    ├── 103_29_clk.txt

    ├── 103_89.txt

    ├── 103_89_clk.txt

```



## Coverage Reportの出し方



```julia

using LocalCoverage

html_coverage(generate_coverage(), open = true)

```

Full testのほうが当然だがcoverageが高くなる。



# 新しいQAQCキャンペーン時に更新すべき内容

# 新しいQAQCキャンペーン時に更新すべき内容





- [`PSBoardDataBase.insert_qaqc_campaign_id`](@ref): キャンペーンの日時

- [`PSBoardDataBase.insert_qaqc_campaign_id`](@ref): キャンペーンの日時
@@ -48,3 +123,21 @@ Modules = [PSBoardDataBase] 
```@autodocs

```@autodocs

Modules = [QaqcMasterLog]

Modules = [QaqcMasterLog]

```

```



## `DownloadCSVs`



```@autodocs

Modules = [DownloadCSVs]

```



## `ClockParser`



```@autodocs

Modules = [ClockParser]

```



## `DispatchChecker`



```@autodocs

Modules = [DispatchChecker]

```

docs/src/assets/get_results.html

0 → 100644
+17 −0

File added.

Preview size limit exceeded, changes collapsed.

docs/src/assets/skew_stats.html

0 → 100644
+17 −0

File added.

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examples/clock_skew_stats.svg

0 → 100644
+1348 −0

File added.

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examples/get_results.jl

0 → 100644
+767 −0

File added.

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examples/skew_histogram_simple.jl

0 → 100644
+1814 −0

File added.

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examples/skew_stats.jl

0 → 100644
+777 −0

File added.

Preview size limit exceeded, changes collapsed.

src/PSBoardDataBase.jl

+27 −11
Original line number Original line Diff line number Diff line
@@ -8,47 +8,62 @@ using DataFrames 
using Dates

using Dates





include("parse_qaqc_master_log.jl")

include("parse_qaqc_master_log.jl")

include("parse_clock.jl")





include("create_table.jl")

include("create_table.jl")



include("download_csv.jl")

include("import_data.jl")

include("import_data.jl")





include("dispatch_checker.jl")

using .DispatchChecker



"""

"""

    create_database_from_exported_csvs(

    create_database_from_exported_csvs(

        dbpath::AbstractString;

        dbpath::AbstractString;

        single_run_csv::AbstractString,

        single_run_csv::AbstractString = DownloadCSVs.download_single_run_csv(),

        runlist_csv::AbstractString,

        runlist_csv::AbstractString = DownloadCSVs.download_runlist_csv(),

        dispatch_csv::AbstractString,

        dispatch_csv::AbstractString = DownloadCSVs.download_dispatch_csv(),

        hundred_csv::AbstractString,

        hundred_csv::AbstractString = DownloadCSVs.download_hundred_run_csv(),

        jathubs_csv::AbstractString = DownloadCSVs.download_jathub_csv(),

        masterlog_dir::AbstractString,

        masterlog_dir::AbstractString,

        slavelog_dir::AbstractString,

    )

    )





Create database at `dbpath` and import data from CSV and master log files.

Create database at `dbpath` and import data from CSV and master log files.





# Arguments

# Arguments



## Required

- `dbpath`: where the database will be created

- `dbpath`: where the database will be created

- `masterlog_dir`: path to the directory (`log`) where all JATHub master logs are stored

- `slavelog_dir`: path to the directory where all JATHub slave logs are stored



## Optional

- `single_run_csv`: CSV of single run results exported from the Google sheets database

- `single_run_csv`: CSV of single run results exported from the Google sheets database

- `runlist_csv`: CSV of run lists exported from the Google sheets database

- `runlist_csv`: CSV of run lists exported from the Google sheets database

- `dispatch_csv`: CSV of dispatch lists exported from the Google sheets database

- `dispatch_csv`: CSV of dispatch lists exported from the Google sheets database

- `hundred_csv`: CSV of 100 tests results exported from the Google sheets database

- `hundred_csv`: CSV of 100 tests results exported from the Google sheets database

- `masterlog_dir`: path to the directory (`log`) where all JATHub master log is stored

- `jathubs_csv`: CSV for jathub list used in QAQC. Used to add skew.

"""

"""

function create_database_from_exported_csvs(

function create_database_from_exported_csvs(

    dbpath::AbstractString;

    dbpath::AbstractString;

    single_run_csv::AbstractString,

    single_run_csv::AbstractString = DownloadCSVs.download_single_run_csv(),

    runlist_csv::AbstractString,

    runlist_csv::AbstractString = DownloadCSVs.download_runlist_csv(),

    dispatch_csv::AbstractString,

    dispatch_csv::AbstractString = DownloadCSVs.download_dispatch_csv(),

    hundred_csv::AbstractString,

    hundred_csv::AbstractString = DownloadCSVs.download_hundred_run_csv(),

    jathubs_csv::AbstractString = DownloadCSVs.download_jathub_csv(),

    masterlog_dir::AbstractString,

    masterlog_dir::AbstractString,

    slavelog_dir::AbstractString,

)

)

    db = create_database(dbpath)

    db = create_database(dbpath)

    single_result_df = CSV.read(single_run_csv, DataFrame)

    single_result_df = CSV.read(single_run_csv, DataFrame)

    runlist_table = CSV.read(runlist_csv, DataFrame)

    runlist_table = CSV.read(runlist_csv, DataFrame)

    dispatch_table = CSV.read(dispatch_csv, DataFrame)

    dispatch_table = CSV.read(dispatch_csv, DataFrame)

    extra_100test_result_df = CSV.read(hundred_csv, DataFrame)

    extra_100test_result_df = CSV.read(hundred_csv, DataFrame)

    jathubs_table = CSV.read(jathubs_csv, DataFrame)





    insert_qaqc_campaign_id(db)

    insert_qaqc_campaign_id(db)

    insert_qaqc_positions(db)

    insert_qaqc_positions(db, jathubs_table)





    add_psboard_ids(db, single_result_df)

    add_psboard_ids(db, single_result_df)

    add_qaqc_runlist_from_runlist(db, runlist_table)

    add_qaqc_runlist_from_runlist(db, runlist_table)
@@ -56,6 +71,7 @@ function create_database_from_exported_csvs( 
    add_qaqc_dispatch(db, dispatch_table)

    add_qaqc_dispatch(db, dispatch_table)

    add_qaqc_runlist_from_masterlogs(db, masterlog_dir)

    add_qaqc_runlist_from_masterlogs(db, masterlog_dir)

    add_qaqc_100test_result(db, extra_100test_result_df)

    add_qaqc_100test_result(db, extra_100test_result_df)

    add_skew_from_slave_clk_logs(db, slavelog_dir)





    db

    db

end

end

src/dispatch_checker.jl

0 → 100644
+190 −0
Original line number Original line Diff line number Diff line 
"""

Module to check PSBoard is dispatchable.



Use [`interactive_dispatch_checker`](@ref) for interactive use in QAQC.

"""

module DispatchChecker



using SQLite

using DBInterface

using DataFrames

using Printf



export DbConnection

export is_dispatchable



"""

Stores connection to database.



    DbConnection(db::SQLite.DB)



Constructor.

"""

mutable struct DbConnection

    db::SQLite.DB

    df_single_result::DataFrame

    df_extra_results::DataFrame

    function DbConnection(db::SQLite.DB)

        df_single_results =

            DBInterface.execute(db, sql"select * from qaqc_single_run_results") |> DataFrame

        df_extra_results =

            DBInterface.execute(db, sql"select * from qaqc_extra_run_results") |> DataFrame

        new(db, df_single_results, df_extra_results)

    end

end



THRESHOLD_INSUFFICIENT_RESET_WITH_10 = 0.1

THRESHOLD_RESET_FAILED_THOUGH_RECONFIG_DONE = 0.1

THRESHOLD_ALWAYS_HIT_FLAG_TRUE = 0.1

THRESHOLD_BCID_FAIL = 0.1



"""

    is_dispatchable(conn::DbConnection, psbid::Int64)



Test whether the PS Board with `psbid` is dispatchable from QAQC results in `conn`.

`conn` is type of [`DbConnection`](@ref).

Since the current implemented logic is somewhat simple, it returns `missing` if it cannot be decided.

"""

function is_dispatchable(conn::DbConnection, psbid::Int64)

    single_results = filter(:psboard_id => ==(psbid), conn.df_single_result)

    extra_results = filter(:psboard_id => ==(psbid), conn.df_extra_results)



    is_single_passed::Bool =

        nrow(single_results) == 1 && let

            single_result = Tables.rowtable(single_results) |> first



            # Clock test update was wrong

            # manually assign to psboards whose clock test failed

            if 221 <= single_result.runid < 234

                if single_result.psboard_id == 915

                    false

                elseif single_result.psboard_id in [860, 889, 876, 892]

                    # though 860 has 2+ rows

                    true

                end

            else

                single_result.resistance_test_passed == 1 &&

                    single_result.qspip == 1 &&

                    single_result.recov == 1 &&

                    single_result.power == 1 &&

                    single_result.clock == 1

            end

        end

    @debug "" is_single_passed single_results single_results.note

    is_extra_passed::Bool =

        nrow(extra_results) == 1 && let

            extra_result = Tables.rowtable(extra_results) |> first

            f1 =

                !ismissing(extra_result.insufficient_reset_with_10) &&

                extra_result.insufficient_reset_with_10 >=

                extra_result.num_tests * THRESHOLD_INSUFFICIENT_RESET_WITH_10

            f2 =

                !ismissing(extra_result.reset_failed_though_reconfig_done) &&

                extra_result.reset_failed_though_reconfig_done >=

                extra_result.num_tests * THRESHOLD_RESET_FAILED_THOUGH_RECONFIG_DONE

            f3 =

                !ismissing(extra_result.always_hit_flag_true) &&

                extra_result.always_hit_flag_true >=

                extra_result.num_tests * THRESHOLD_ALWAYS_HIT_FLAG_TRUE

            f4 =

                !ismissing(extra_result.bcid_fail) &&

                extra_result.bcid_fail >= extra_result.num_tests * THRESHOLD_BCID_FAIL

            @debug "" extra_result extra_result.note f1 f2 f3 f4

            !(f1 || f2 || f3 || f4)

        end

    @debug "" is_extra_passed extra_results



    if is_single_passed & is_extra_passed

        return true

    end



    # TODO: not yet implemented

    @info "results" single_results select(

        extra_results,

        Not(:id, :num_tests, :dac_is_0, :bcid_fail_111, :bcid_fail_000, :low_efficiency),

    )

    @debug "results(full)" extra_results

    return missing

end



"""

Interactive session for QAQC to check PSBoard is ready for dispatch.

"""

function interactive_dispatch_checker end



"""

    interactive_dispatch_checker(conn::DbConnection)

"""

function interactive_dispatch_checker(conn::DbConnection)

    dispatch_list = Int64[]



    println("Type \"quit\" to exit")

    for _ in 1:1000

        printstyled("PSBoard ID: ", bold = true)

        psbid = let

            rawin = readline()

            if lowercase(rawin) == "quit"

                printstyled("Quit\n", italic = true)

                println()

                break

            end

            m = match(r"^PS(\d+)", rawin)

            if isnothing(m)

                printstyled("Invalid input\n", color = :red)

                continue

            end

            parse(Int64, m[1])

        end

        isdispatchable = is_dispatchable(conn, psbid)

        if ismissing(isdispatchable)

            printstyled("Please determine [y/n]: ", underline = true, color = :cyan)

            isdispatchable = let

                rawin = readline()

                @info "" rawin

                if rawin == "y" || rawin == "Y"

                    true

                elseif rawin == "n" || rawin == "N"

                    false

                else

                    @warn "Invalid input falling back to \"no\""

                    false

                end

            end

        end

        if isdispatchable

            printstyled("Ok\n", bold = true, color = :green)

            if psbid in dispatch_list

                println("PSBoard ID $(psbid) is already in dispatch list")

            else

                push!(dispatch_list, psbid)

                println("Added to dispatch list")

            end

        else

            printstyled("No\n", bold = true, color = :red)

        end

    end



    printstyled("Finished\n")



    map(dispatch_list) do psbid

        @sprintf "PS%06d" psbid

    end |> (v -> join(v, "\n")) |> print

    println()



    printstyled("Paste the result to google sheets\n", underline = true)

    @info "Tips: You can use `join(ans, \"\\n\") |> clipboard` in REPL to copy the result to the clipboard"



    return dispatch_list

end



"""

    interactive_dispatch_checker(database_file::AbstractString)



Interactive session for QAQC to check provided PSBoard is ready to dispatch.

"""

function interactive_dispatch_checker(database_file::AbstractString)

    conn = DbConnection(SQLite.DB(database_file))

    interactive_dispatch_checker(conn)

end



end # module DispatchChecker

src/download_csv.jl

0 → 100644
+61 −0
Original line number Original line Diff line number Diff line 
"""

Functions to download result CSVs from Google Sheets.

All functions return the filename in `String`.

"""

module DownloadCSVs



using Downloads



"""

    download_single_run_csv(outfile::AbstractString = tempname()) -> filename



# Example

```jldoctest

julia> file = PSBoardDataBase.DownloadCSVs.download_single_run_csv();



julia> using CSV



julia> using DataFrames



julia> CSV.read(file, DataFrame) isa DataFrame

true

```

"""

function download_single_run_csv(outfile::AbstractString = tempname())

    URL_SINGLE_RUN_CSV::String = "https://docs.google.com/spreadsheets/u/1/d/128qOseOy4QDotehYe4Wf2jj88tnwiXGVdR3NHrjcDYU/export?format=csv&id=128qOseOy4QDotehYe4Wf2jj88tnwiXGVdR3NHrjcDYU&gid=408695746"

    Downloads.download(URL_SINGLE_RUN_CSV, outfile)

end



"""

    download_runlist_csv(outfile::AbstractString = tempname()) -> filename

"""

function download_runlist_csv(outfile::AbstractString = tempname())

    URL_RUNLIST_CSV::String = "https://docs.google.com/spreadsheets/u/1/d/128qOseOy4QDotehYe4Wf2jj88tnwiXGVdR3NHrjcDYU/export?format=csv&id=128qOseOy4QDotehYe4Wf2jj88tnwiXGVdR3NHrjcDYU&gid=252134084"

    Downloads.download(URL_RUNLIST_CSV, outfile)

end



"""

    download_dispatch_csv(outfile::AbstractString = tempname()) -> filename

"""

function download_dispatch_csv(outfile::AbstractString = tempname())

    URL_DISPATCH_CSV::String = "https://docs.google.com/spreadsheets/u/1/d/128qOseOy4QDotehYe4Wf2jj88tnwiXGVdR3NHrjcDYU/export?format=csv&id=128qOseOy4QDotehYe4Wf2jj88tnwiXGVdR3NHrjcDYU&gid=707598141"

    Downloads.download(URL_DISPATCH_CSV, outfile)

end



"""

    download_hundred_run_csv(outfile::AbstractString = tempname()) -> filename

"""

function download_hundred_run_csv(outfile::AbstractString = tempname())

    URL_HUNDRED_RUN_CSV::String = "https://docs.google.com/spreadsheets/u/1/d/128qOseOy4QDotehYe4Wf2jj88tnwiXGVdR3NHrjcDYU/export?format=csv&id=128qOseOy4QDotehYe4Wf2jj88tnwiXGVdR3NHrjcDYU&gid=615256061"

    Downloads.download(URL_HUNDRED_RUN_CSV, outfile)

end



"""

    download_jathub_csv(outfile::AbstractString = tempname()) -> filename

"""

function download_jathub_csv(outfile::AbstractString = tempname())

    URL_JATHUB_CSV::String = "https://docs.google.com/spreadsheets/u/1/d/128qOseOy4QDotehYe4Wf2jj88tnwiXGVdR3NHrjcDYU/export?format=csv&id=128qOseOy4QDotehYe4Wf2jj88tnwiXGVdR3NHrjcDYU&gid=303843601"

    Downloads.download(URL_JATHUB_CSV, outfile)

end



end # module DownloadCSVs

src/import_data.jl

+86 −6
Original line number Original line Diff line number Diff line 
"""

    insert_version_info(db::SQLite.DB)



Insert version information of this software as string.

"""

function insert_version_info(db::SQLite.DB)

    stmt = DBInterface.prepare(

        db,

        sql"""

        INSERT INTO versions VALUES (:converter)

        """,

    )

    DBInterface.execute(stmt, (; converter = pkgversion(@__MODULE__) |> string))



    nothing

end



"""

"""

    insert_qaqc_campaign_id(db::SQLite.DB)

    insert_qaqc_campaign_id(db::SQLite.DB)





Fill qaqc_campaigns table in `db`.

Fill qaqc_campaigns table in `db`.

"""

"""

function insert_qaqc_campaign_id(db::SQLite.DB)

function insert_qaqc_campaign_id(db::SQLite.DB)

    campaigns = [1, 2, 3]

    campaigns = [1, 2, 3, 4]

    dates = [

    dates = [

        (DateTime(2024, 7, 22), DateTime(2024, 7, 24)),

        (DateTime(2024, 7, 22), DateTime(2024, 7, 24)),

        (DateTime(2024, 8, 6), DateTime(2024, 8, 9)),

        (DateTime(2024, 8, 6), DateTime(2024, 8, 9)),

        (DateTime(2024, 9, 10), DateTime(2024, 9, 12)),

        (DateTime(2024, 9, 10), DateTime(2024, 9, 12)),

        (DateTime(2024, 9, 30), DateTime(2024, 10, 4)),

    ]

    ]

    stmt = DBInterface.prepare(

    stmt = DBInterface.prepare(

        db,

        db,
@@ -28,11 +46,18 @@ function insert_qaqc_campaign_id(db::SQLite.DB) 
end

end





"""

"""

    insert_qaqc_positions(db::SQLite.DB)

    insert_qaqc_positions(db::SQLite.DB, jathub_db_table::DataFrame)





Fill qaqc_positions table in `db`.

Fill qaqc_positions table in `db`.

Argument `jathub_db_table` is for skew for each positions.

"""

"""

function insert_qaqc_positions(db::SQLite.DB)

function insert_qaqc_positions(db::SQLite.DB, jathub_db_table::DataFrame)

    dropmissing!(jathub_db_table, :psb_position)

    transform!(

        jathub_db_table,

        Symbol("立ち上がり [ns]") => ByRow(Float64) => Symbol("立ち上がり [ns]"),

    )



    stmt = DBInterface.prepare(

    stmt = DBInterface.prepare(

        db,

        db,

        sql"""

        sql"""
@@ -41,7 +66,8 @@ function insert_qaqc_positions(db::SQLite.DB) 
            :id,

            :id,

            :name,

            :name,

            :station,

            :station,

            :position

            :position,

            :rising_ns

        )

        )

        """,

        """,

    )

    )
@@ -52,6 +78,12 @@ function insert_qaqc_positions(db::SQLite.DB) 
            name = ["B-$i-$j" for i in 0:1 for j in 1:9],

            name = ["B-$i-$j" for i in 0:1 for j in 1:9],

            station = [fill(0, 9); fill(1, 9)],

            station = [fill(0, 9); fill(1, 9)],

            position = [collect(1:9); collect(1:9)],

            position = [collect(1:9); collect(1:9)],

            rising_ns = [

                filter(

                    :psb_position => (s -> !ismissing(s) && s == "B-$i-$j"),

                    jathub_db_table,

                ).var"立ち上がり [ns]" |> first for i in 0:1 for j in 1:9

            ],

        ),

        ),

    )

    )
@@ -163,8 +195,10 @@ function get_campaign_id_from_run_id(runid::Integer) 
        1

        1

    elseif runid < 98

    elseif runid < 98

        2

        2

    elseif runid < 169

    elseif runid < 188

        3

        3

    elseif runid < 242

        4

    else

    else

        @error "Fix this function"

        @error "Fix this function"

        DomainError("runid $(runid) is not registered to the software")

        DomainError("runid $(runid) is not registered to the software")
@@ -179,7 +213,7 @@ end 
    ) -> nothing

    ) -> nothing





Fill `qaqc_single_run_results` in `db` from single result table DataFrame.

Fill `qaqc_single_run_results` in `db` from single result table DataFrame.

Additionaly, it

Additionally, it

1. automatically add `runid` if it's not in `qaqc_runs` table in `db`.

1. automatically add `runid` if it's not in `qaqc_runs` table in `db`.

2. automatically update fields in `qaqc_runs` table.

2. automatically update fields in `qaqc_runs` table.

"""

"""
@@ -671,3 +705,49 @@ function add_qaqc_100test_result(db::SQLite.DB, table::DataFrame) 




    nothing

    nothing

end

end



"""

    add_skew_from_slave_clk_logs(db::SQLite.DB, logs_dir::AbstractString)



Insert skew measurement result from slave logs with name `psbid_runid_clk.txt`.

See [`ClockParser.get_skew`](@ref) for parse detail.



# Abnormal logs:

- `48_nagoya_irradition_...`: skipped

- `630_190`: broken file

"""

function add_skew_from_slave_clk_logs(db::SQLite.DB, logs_dir::AbstractString)

    stmt_insrt = DBInterface.prepare(

        db,

        sql"""

        UPDATE qaqc_single_run_results

        SET lvds_tx_skew = :skew

        WHERE runid = :runid AND psboard_id = :psbid

        """,

    )

    clk_files =

        readdir("$logs_dir/main", join = true) |>

        filter(endswith("_clk.txt")) |>

        filter(!contains("nagoya"))



    DBInterface.transaction(db) do

        for file in clk_files

            m = match(r"^(?<psbid>\d+)_(?<runid>\d+)_clk.txt$", splitdir(file) |> last)

            if isnothing(m)

                error("Invalid filename $(file)")

            end



            if m[:psbid] == "630" && m[:runid] == "190"

                @debug "skipping... (psbid=630 runid=190 is broken)"

                continue

            end



            DBInterface.execute(

                stmt_insrt,

                (skew = ClockParser.get_skew(file), runid = m[:runid], psbid = m[:psbid]),

            )

        end

    end



    nothing

end

src/parse_clock.jl

0 → 100644
+131 −0
Original line number Original line Diff line number Diff line 
module ClockParser



export get_skew



function _parse_line(line::AbstractString)

    time, high, _ = split(line)

    parse(Float64, time), parse(Float64, high)

end



"""

    get_skew(file::T) where {T <: AbstractString} -> Union{Float64, Missing}



Get skew from clock result file `file`.

It returns `missing` for invalid files.

To see the detailed reason, increase log level to `DEBUG`.

Invalid cases are:



- first line has >0 counts => "Unexpected first line"

- no measurement has >500 counts => "Clock skew out of range"

"""

function get_skew(file::T) where {T <: AbstractString}

    @debug "file: $(file)"

    lines = Iterators.Stateful(eachline(file))



    was_0_before = false

    # criteria is changed from QAQC for skew parsing

    let

        first_line = popfirst!(lines)

        time, high = _parse_line(first_line)

        if high == 0

            was_0_before = true

        end

    end



    time_and_counts = Iterators.map(_parse_line, lines)

    for (time, high) in time_and_counts

        if high == 0

            was_0_before = true

        elseif was_0_before && high >= 500

            return time

        end

    end

    @debug "Clock skew out of range"

    return missing

end



"""

    search_oscillation(file::T) where {T <: AbstractString}



Search oscillation (two or more rise up) for clock measurement file.

"""

function count_riseup(file::T) where {T <: AbstractString}

    lines = Iterators.Stateful(eachline(file))



    rising_count = 0

    first_line = popfirst!(lines)

    is_high = let

        time, high = _parse_line(first_line)

        high >= 500

    end



    time_and_counts = Iterators.map(_parse_line, lines)

    for (time, high) in time_and_counts

        if !is_high && high >= 500

            is_high = true

            rising_count += 1

        elseif is_high && high < 500

            is_high = false

        end

    end



    return rising_count



    # lines = eachline(file)

    # time_and_counts = Iterators.map(_parse_line, lines)

    # is_high = Iterators.map(time_and_counts) do (time, counts)

    #     counts >= 500

    # end

    # edges = Iterators.map(accumulate((p, n) -> (n, !p[1] & n), is_high, init = (false, false))) do x

    #     _prev, edge = x

    #     edge

    # end

    #

    # return sum(edges)

end



"""

Return Tuple of

- skew (first time >500)

- rise up full (last 0 to first 1000)



If clock is abnormal (i.e., which returns `missing` when [`get_skew`](@ref) is applied),

this returns Tuple of 2 `missing`s.

"""

function get_skew_and_riseup(file::T) where {T <: AbstractString}

    lines = Iterators.Stateful(eachline(file))



    last_low_time = missing

    first_high_time = missing

    skew = missing

    is_rised = false



    let

        _time, high = _parse_line(popfirst!(lines))

        if high == 0

            last_low_time = time

        end

    end



    for line in lines

        time, high = _parse_line(line)

        if high == 0

            last_low_time = time

        elseif !ismissing(last_low_time) && !is_rised && high >= 500

            skew = time

            is_rised = true

        elseif !ismissing(skew) && high == 1000

            first_high_time = time

            break

        end

    end



    if first_high_time === missing

        @debug "Clock skew out of range"

        return (missing, missing)

    end



    return (skew, first_high_time - last_low_time)

end



end # module ClockParser

src/sql/create_table.sql

+8 −2
Original line number Original line Diff line number Diff line 
CREATE TABLE versions (

  converter TEXT

);



CREATE TABLE ps_boards (

CREATE TABLE ps_boards (

  id INTEGER NOT NULL PRIMARY KEY,

  id INTEGER NOT NULL PRIMARY KEY,

  daughterboard_id INTEGER

  daughterboard_id INTEGER
@@ -17,6 +21,7 @@ CREATE TABLE qaqc_single_run_results ( 
  asdtp INTEGER,

  asdtp INTEGER,

  reset INTEGER,

  reset INTEGER,

  qaqc_result INTEGER,

  qaqc_result INTEGER,

  lvds_tx_skew REAL,

  note TEXT,

  note TEXT,

  FOREIGN KEY("runid") REFERENCES "qaqc_runs"("id"),

  FOREIGN KEY("runid") REFERENCES "qaqc_runs"("id"),

  FOREIGN KEY("psboard_id") REFERENCES "ps_boards"("id"),

  FOREIGN KEY("psboard_id") REFERENCES "ps_boards"("id"),
@@ -89,7 +94,8 @@ CREATE TABLE qaqc_positions ( 
  id INTEGER NOT NULL PRIMARY KEY,

  id INTEGER NOT NULL PRIMARY KEY,

  name TEXT NOT NULL UNIQUE,

  name TEXT NOT NULL UNIQUE,

  station INTEGER NOT NULL,

  station INTEGER NOT NULL,

  position INTEGER NOT NULL

  position INTEGER NOT NULL,

  rising_ns NUMERIC NOT NULL

);

);





CREATE VIEW qaqc_single_run_table

CREATE VIEW qaqc_single_run_table
@@ -109,8 +115,8 @@ AS 
    qaqc_single_run_results.asdtp,

    qaqc_single_run_results.asdtp,

    qaqc_single_run_results.reset,

    qaqc_single_run_results.reset,

    qaqc_single_run_results.qaqc_result,

    qaqc_single_run_results.qaqc_result,

    qaqc_single_run_results.lvds_tx_skew - qaqc_positions.rising_ns AS lvds_tx_skew,

    qaqc_runs.shiftscript_ver,

    qaqc_runs.shiftscript_ver,

    qaqc_runs.shifter,

    qaqc_single_run_results.note AS result_note

    qaqc_single_run_results.note AS result_note

  FROM

  FROM

    ps_boards,

    ps_boards,

test/input/.gitignore

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slavelogs/main/*

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!slavelogs/main/448_103_clk.txt

!slavelogs/main/444_103_clk.txt

!slavelogs/main/209_51_clk.txt

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