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GMR-542: deprecate Algorithm begin/end run methods

Charles Leggett requested to merge leggett/AtlasGaudi:dev/GMR-542 into atlas/v30r1

see gaudi/Gaudi!542 (merged)

Algorithms should not know about begin and end run transitions, as these concepts become fuzzy if not entirely meaningless in an environment where multiple events are processed concurrently. In the vast majority of cases, anything done in Algorithm::beginRun can be migrated to Algorithm::start, and endRun -> stop.

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