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Patch for running Digi_tf.py with --multithreaded and --multiprocess options

John Derek Chapman requested to merge jchapman/athena:MPART_fixes_master into master

Running Digi_tf.py leads to currentSubstep=None in athenaExecutor._prepAthenaCommandLine There was already a workaround for this for two cases, now added protections for the checks for --threads and --nprocs.

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