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Fix L1 menu configuration in RDOtoRDOTrigger skeleton when doMT=True

Rafal Bielski requested to merge rbielski/athena:fix-RDOtoRDOTrig-L1Menu into master

Before this fix, the menu was set to LS2_v1 only after configuring the L1, so the default L1 menu was used (v7 primaries). This is fixing the placement of the triggerMenuSetup flag to make sure that both L1 and HLT use the same.

Relevant for ATR-20179 and fixes this test in CI, which is broken for all MRs today. Thus, very urgent!

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