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Improved confTool.py to produce correct output / confTool.py refactor

Michal Leszczynski requested to merge (removed):fix-conf-tool into master

Now the diff option does not treat as different:

  • True and 'True'
  • Sets having different internal order (because they are intepreted as lists when loading .pkl files)

Many changes from " to ' are results of using python pep8 formatting tool - black.

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