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[ATR-24689] Change the trigger menu metadata merging strategy

Tim Martin requested to merge tamartin/athena:change_metadata_merge_strat into master

Change the trigger menu metadata merging strategy to double-merge (both input file -> internal store, and internal store -> output file)

This is to resolve an issue in MP AOD->DAOD processing in release 22 where some JSON were missing from the output file due to the lack of this second merging pass.

A global mutex is put in just for safety.

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