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Fixes for CollectionMerger configuration for Run3 ATLFASTIIF_G4MS

This set of changes allows jobs running FATRAS to finish successfully for Run3 geometries.

It may be possible to clean things up further for ATLFASTIIF_G4MS jobs, where we don't need to support simulation of the Muon system in FATRAS, but that will require larger changes.

Tagging: @lmijovic, @pagacova, @golling, @tcuhadar, @sjiggins

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