Synchronise CA with old-style config, and fix some mistakes: part 3

This MR is another attempt to reduce the output differences when running CA compared to old-style configuration. Since this is not on by default, it will have no impact on existing production.

I tested this locally with the q445 test (link) and this removes the last reported muon differences. Edit: when running from the same RDO input, to avoid RDO differences.

Next is to try for binary identicality

cc @elmsheus @nstyles