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AnalysisTop: Separate reco and trigger input folder for SFs for muons

Tomas Dado requested to merge tdado/athena:AnalysisTop-SeparateMuonTriggerFolder into master

Currently, one path can be set for both reco and trigger folder, this is suboptimal as the reco SFs will be available shortly, but not the trigger ones. Thus, separating the config options.

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