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AthenaCommon: cleanup of athena.py

Merged AthenaCommon: cleanup of athena.py
fwinkl/athena:athena_cleanup into master
Merged Frank Winklmeier requested to merge fwinkl/athena:athena_cleanup into master
  • enable flake8 checking
  • add --CA option to help
  • code cleanup

Also delete unused test_cfg_pickling.py.

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