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Refactoring some MM L1 simulation internal computations

Francesco Giuseppe Gravili requested to merge fgravili/athena:extraLoop into master

A list of minor changes:

  • Removed extra for loop from MM Diamond algorithm
  • Changed internal computations and/or functions to use less parameters
  • Removed unused members and functions or changed to something more useful for future developments
  • Used more compact variable assignments, reducing the amount of operations

./cc @vadamico

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