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athenaHLT/runHLT: fix flag parsing

Merged athenaHLT/runHLT: fix flag parsing
fwinkl/athena:athhlt_flags into main
Merged Frank Winklmeier requested to merge fwinkl/athena:athhlt_flags into main
  1. Jan 30, 2024
    • Frank Winklmeier's avatar
      athenaHLT/runHLT: fix flag parsing · c51bb8e6
      Frank Winklmeier authored 
      Ensure to parse the flags given on the command line, after we are
setting the default values. This ensures that e.g. `Beam.Type` can be
overwritten on the command line for the cosmics menu.

Relates to ATR-28733.
      c51bb8e6