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Fixes for alignment handling in TRT

Vakhtang Tsulaia requested to merge tsulaia/athena:trt-alignstore into main
  1. Added an optional argument of type GeoAlignmentStore* to TRT_BaseElement::updateAllCaches()

The pointer to the alignment store is passed down the call chain so that it can be used eventually to retrieve absolute positions of full physical volumes. The ultimate goal of this fix is to properly take into account alignment corrections from the Condition Store as opposed to relying on legacy alignment callbacks

  1. Added the handling of special alignments to TRTAlignCondAlg. This functionality was missing
  2. Bugfix in TRT_DetectorManage: pass the pointer to the GeoAlignmentStore to the calls to clearDelta()

ATEAM-1057

Edited by Vakhtang Tsulaia

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