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PyModules: Create target directories explicitly

Frank Winklmeier requested to merge fwinkl/atlasexternals:pymodules_mkdir into master

Create target directories explicitly before copying files into them. According to the documentation of copy_directory this should not be necessary but our CI jobs say differently.

Fixes problems seen in !487 (merged), !470 (merged), etc.

Edited by Frank Winklmeier

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