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Created new json and pickled configuration output

Davide Valsecchi requested to merge github/fork/valsdav/config_output into main

The configuration is dumped in the output folder in two formats.

  • json: Only the cut function name and parameters are retained, not the full object.
  • pickle: the full Configurator object is dumped and it may be directly used to run again.

Now the outputdir can be overwritten by the runner.py options.

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