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Merge development of Example 1 (and various train/infer/eval scripts) into Master

Daniel Thomas Murnane requested to merge dev_DM_0 into master

Major changes:

  • Large code additions to each stage, these may not be compatible yet with the version that Sylvain will write, but should be able to merge in quite easily
  • train.py, infer.py, eval.py complete as version 1. These may also need to change after Sylvain overall's class updates
  • examples/Example_1 now has a set of .yaml files for each stage's train/infer/eval process

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