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Make all necessary fixes to fully run Example 3

Daniel Thomas Murnane requested to merge dmurnane_fix_example_3 into dev

This MR focuses on Example 3, where we need to change:

  • Many of the Example 3 configs, which were out-of-date with the updates to the rest of the library
  • A couple of minor refactors in the data reading, to allow for data without cluster features, and to add "hardware" key to TrackML data
  • Enforced pT to be in MeV, to make consistency between ITk and TrackML pipelines
  • Updated Example 3 README to be more clear about how to use the optional filtering stage

NB - I tested the updated DataReader with the other examples, and it's fine

Edited by Daniel Thomas Murnane

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