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Include full pipeline in CI/CD

Daniel Thomas Murnane requested to merge dmurnane_cicd_pipeline_test into dev

This MR contains all the changes needed to:

  • Run the pipeline stage (i.e. arbitrary number of inference stages)
  • Run CI/CD with the CTD2023 example, with hard cuts (since the Gitlab runner CPU cannot handle the full events)

It should be merged after !120 (merged), since that allows the hard cut system in module map.

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