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[master] Respect fileTypesToKeep in TransformationCleaningAgent

Chris Burr requested to merge cburr/LHCbDIRAC:keep-merged-hists into master

The histogram merging agent's output has been disappearing after transformations are archived. I think this should fix it.

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*Transformation FIX: Respect fileTypesToKeep in TransformationCleaningAgent

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