Prototype of new alignment configuration

Overview

This MR contains a prototype for configuring alignment jobs using a Moore-like configuration. Its main purpose is documenting the work done during past hackathons and to serve as basis for the next steps. It includes track and vertex selections, adding constraints and defining the elements to be aligned. The fundamental change is making the Alignment project depend on Moore instead of Phys.

Some documentation how to use the new configuration is provided in Alignment/Humboldt/README.md

Next steps and open points are summarised in #17 and #20

Configurations

The configurations added are

Alignment/Humboldt/options/AlignVPHalvesModules.py #example Velo alignment job
Alignment/Humboldt/options/AlignVPHalvesModules_PrKalman.py #example Velo job using PrKalman (see #16)
Alignment/Humboldt/options/AlignFTStationsLayers.py #example SciFi job
Alignment/Humboldt/options/AlignVPHalvesModules_Analyzer.py #run analyser part of example alignment job
Alignment/Humboldt/options/AlignVPHalvesModules_Iterator.py #run iterator part of example alignment job

Helper functions to set up new configuration are in Alignment/Humboldt/python/Humboldt/utils.py.

Central track and particle selections are started to be defined in

Alignment/Humboldt/python/Humboldt/TrackSelections.py
Alignment/Humboldt/python/Humboldt/ParticleSelections.py

New functionality (WIP)

• add AlignIterator taking parts from OnlineAlignment to perform iterator part offline

Tests

• add Alignment/Humboldt/tests/qmtest/humboldt.qms/align-vp-halves-modules.qmt to test new configuration
• add Alignment/Humboldt/tests/qmtest/humboldt.qms/analyzer-vp-halves-modules.qmt to test Analyzer part
• add Alignment/Humboldt/tests/qmtest/humboldt.qms/iterator-vp-halves-modules.qmt to test Iterator part
• add Alignment/Humboldt/tests/qmtest/humboldt.qms/align-vp-halves-modules-splititer.qmt to test gaudisplititer.py (WIP)

Uses Rec!2495 (merged)

added 1 commit

• 821b19ab - WIP: try adding more options to alignment PyConf

Compare with previous version

added 1 commit

• 0e203bb7 - use PatPV3DFuture for PyConf alignment

Compare with previous version

If you have suggestions, how to improve how things are organized in RecoConf feel free to open issues.

mentioned in merge request Rec!2495 (merged)

added 19 commits

• 0e203bb7...7662eab4 - 15 commits from branch master
• f499456a - Merge remote-tracking branch 'origin/master' into pyconf
• 12b46d5e - get tracks and PVs from reconstruction object
• bfa60e2d - Merge branch 'pyconf2' into pyconf
• d5df1748 - Merge remote-tracking branch 'origin/master' into pyconf

Compare with previous version

added 1 commit

• 23b13c90 - write out xml files

Compare with previous version

changed the description

added 3 commits

• da2513dd - use VeloClusterTrackingSIMDFull in new configuration
• cd1d48d1 - reorganize new configuration in Humboldt
• 224e887f - prototype for new SciFi configuration

Compare with previous version

added 1 commit

• 89611b26 - Add some documentation

Compare with previous version

added 1 commit

• c9da1ece - Update doc.md

Compare with previous version

marked the checklist item refactoring the different steps into separate files/functions as completed

mentioned in issue #17

added 5 commits

• 07ad9549 - rename Velo.py
• 16c0106c - workaround for different PV locations
• 4692cbbc - add script to use PrKalman
• 279e822b - try to recosntruct D0 for SciFi alignment
• d46a3b9d - Merge remote-tracking branch 'origin/pyconf' into pyconf

Compare with previous version

changed the description

added 17 commits

• d46a3b9d...73f3b4c4 - 16 commits from branch master
• 75f579b1 - update Moore dependency

Compare with previous version

added 1 commit

• 624084e0 - update scripts

Compare with previous version

added 1 commit

• 448c378e - Update README.md

Compare with previous version

added 1 commit

• 92654475 - Update README.md

Compare with previous version

added 1 commit

• 78d7501f - use fastet reco for alignment with PrKalman

Compare with previous version

added 2 commits

• 33b45f37 - backup prototype velo.py
• 8239d472 - remove protoype velo.py

Compare with previous version

mentioned in merge request Moore!1152 (merged)

added 1 commit

• 7d0bfde7 - add missing copyright statements

Compare with previous version

added 1 commit

• 9fefbe56 - manually fix some formatting

Compare with previous version

added 1 commit

• 517acbdd - manually fix some formatting

Compare with previous version

added 1 commit

• 35c7157e - manually fix some formatting

Compare with previous version

added 1 commit

• cc73fe5e - Fixed formatting

Compare with previous version

added 1 commit

• 2032fc9a - try to fix formatting

Compare with previous version

added 8 commits

• 2032fc9a...8d9d0d75 - 6 commits from branch master
• b4ff1f87 - Merge remote-tracking branch 'origin/master' into HEAD
• 5e835b74 - adapt to changes to VPTrackSelector

Compare with previous version

added 2 commits

• 4bafa18d - add offline analyzer
• 54cb0622 - add offline iterator

Compare with previous version

added 2 commits

• 10416149 - clean up AlignIterator
• ab1a95c1 - remove AlignIteratorComponent

Compare with previous version

added 2 commits

• ed7b8db5 - add switch to choose between old and new configuration in gaudiiter
• 49207f6a - set up Humboldt tests

Compare with previous version

added 2 commits

• 3946832c - make AlignUpdateTool public again
• 0eb748ee - update README

Compare with previous version

added 1 commit

• aa9928c5 - Fixed formatting

Compare with previous version

added 3 commits

• de177e29 - Expect single quotes when parsing XMLWriter vectors
• 142cbc05 - use fixed XMLWriter parser
• e573abe4 - mark TODO in gaudiiter

Compare with previous version

added 1 commit

• 06b03c7a - Fixed formatting

Compare with previous version

added 4 commits

• b9710a96 - add exception when trying to run new configuration with more than one iteration
• 7aa2f863 - set default XMLWriters to empty list
• 3c0fef05 - add tests for Humboldt
• 1036882c - fix validate-analyzer.py

Compare with previous version

added 1 commit

• 65325256 - write out xml files from AlignIterator

Compare with previous version

added 5 commits

• e725689a - write out xml with constants from AlignIterator.py
• 2a108300 - align for modules in Analyzer
• b591589f - use file at CERN
• 56422a85 - use file at CERN
• 91c078d2 - update Analyzer ref file

Compare with previous version

added 2 commits

• 10fefe0c - add test for iterator using putput from analyser
• 718a8f1b - finalize Humboldt tests

Compare with previous version

added 1 commit

• 8efe1a58 - Fixed formatting

Compare with previous version

added 2 commits

• 117fc6cb - add Humboldt test for gaudisplititer
• 3bb092fa - fix gaudisplititer test

Compare with previous version

added 1 commit

• 1cb2ed82 - Fixed formatting

Compare with previous version

changed the description

added 1 commit

• 02161bb6 - change test to check for output files instead of convergence

Compare with previous version

added 2 commits

• 2f144657 - clean up AlignIterator
• 56549005 - set UpdateInFinalize to False as default

Compare with previous version

added 1 commit

• 54b99b3e - Fixed formatting

Compare with previous version