Prototype of new alignment configuration

Overview

This MR contains a prototype for configuring alignment jobs using a Moore-like configuration. Its main purpose is documenting the work done during past hackathons and to serve as basis for the next steps. It includes track and vertex selections, adding constraints and defining the elements to be aligned. The fundamental change is making the Alignment project depend on Moore instead of Phys.

Some documentation how to use the new configuration is provided in Alignment/Humboldt/README.md

Next steps and open points are summarised in #17 and #20

Configurations

The configurations added are

Alignment/Humboldt/options/AlignVPHalvesModules.py #example Velo alignment job
Alignment/Humboldt/options/AlignVPHalvesModules_PrKalman.py #example Velo job using PrKalman (see #16)
Alignment/Humboldt/options/AlignFTStationsLayers.py #example SciFi job
Alignment/Humboldt/options/AlignVPHalvesModules_Analyzer.py #run analyser part of example alignment job
Alignment/Humboldt/options/AlignVPHalvesModules_Iterator.py #run iterator part of example alignment job

Helper functions to set up new configuration are in Alignment/Humboldt/python/Humboldt/utils.py.

Central track and particle selections are started to be defined in

Alignment/Humboldt/python/Humboldt/TrackSelections.py
Alignment/Humboldt/python/Humboldt/ParticleSelections.py

New functionality (WIP)

• add AlignIterator taking parts from OnlineAlignment to perform iterator part offline

Tests

• add Alignment/Humboldt/tests/qmtest/humboldt.qms/align-vp-halves-modules.qmt to test new configuration
• add Alignment/Humboldt/tests/qmtest/humboldt.qms/analyzer-vp-halves-modules.qmt to test Analyzer part
• add Alignment/Humboldt/tests/qmtest/humboldt.qms/iterator-vp-halves-modules.qmt to test Iterator part
• add Alignment/Humboldt/tests/qmtest/humboldt.qms/align-vp-halves-modules-splititer.qmt to test gaudisplititer.py (WIP)

Uses Rec!2495 (merged)

Alignment/Escher/scripts/gaudisplititer.py

@@ -96,11 +96,20 @@ parser.add_option(
     help="use Humboldt option files",
     default=False)
 
+
+parser.add_option(
+    "-x",
+    "--xmlprefix",
+    type='string',
+    dest="xmlprefix",
+    help="path where constants are written to",
+    default='xml')
+
 (opts, args) = parser.parse_args()
 
 import os
 rundir = os.getcwd()
-outputdir = rundir + "/" + opts.basedir
+outputdir = rundir + "/" + opts.basedir.lstrip(' ')
 
 if not os.path.isdir(outputdir):
     os.mkdir(outputdir)
@@ -134,7 +143,7 @@ for i in range(opts.firstiter, opts.numiter):
     if i > 0:
         previterdir = outputdir + '/Iter' + str(i - 1)
         if not usesqldb:
-            previterdb = os.path.join(previterdir, 'xml')
+            previterdb = os.path.join(previterdir, opts.xmlprefix.lstrip(' '))
             if not os.path.exists(os.path.join(previterdb, '.git')):
                 os.chdir(previterdb)
                 os.system("git init -q")
@@ -179,7 +188,7 @@ for i in range(opts.firstiter, opts.numiter):
         os.system('gzip logfile.txt')
         # keep only the last version of the derivatives. they take too much space.
         # os.system( 'mv -f myderivatives.dat ..')
-    os.chdir(rundir + '/' + opts.basedir)
+    os.chdir(rundir + '/' + opts.basedir.lstrip(' '))
 
 # create a single alignlog file
 os.system('rm -f alignlog.txt')