Update Flavour Tagging qmtest files
The FT qmtest reference file and job options are adjusted for the new FT package. The nightly FT tests should switch to green with this again.
Ping @erodrigu, @sakar, @mschille. This MR needs to be combined with Analysis!338 (merged) (BTaggingChecker) and Phys!338 (merged) (FT Tuning adjustment).