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Allow passing lines maker with options

Rosen Matev requested to merge rmatev-cf-hook into master

Allow for giving the data flow maker "make_lines" via the global ApplicationOptions. This allows for defining make_lines in a different file than the one calling run_moore.

Backward compatibility is kept (make_lines can be passed explicitly), such that existing options are not affected.

Needed for MooreAnalysis!12 (merged)

Edited by Rosen Matev

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