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with 1708 additions and 1267 deletions
......@@ -22,8 +22,8 @@ LCG_external_package(py_tools 2021.2.7 )
LCG_external_package(pycuda 2024.1 )
LCG_external_package(pyopencl 2024.1 )
LCG_external_package(tvm 0.16.0 )
LCG_external_package(jax_cuda12_pjrt 0.4.28 )
LCG_external_package(jax_cuda12_plugin 0.4.28 )
LCG_external_package(jax_cuda12_pjrt 0.5.0 )
LCG_external_package(jax_cuda12_plugin 0.5.0 )
#----Overwites for Ubuntu20---------------------------------------
......
......@@ -356,8 +356,8 @@ if(LCG_COMP STREQUAL "clang")
endif()
LCG_external_package(jacobi 0.9.2 )
LCG_external_package(java 8u392 )
LCG_external_package(jax 0.4.28 )
LCG_external_package(jaxlib 0.4.28 )
LCG_external_package(jax 0.5.0 )
LCG_external_package(jaxlib 0.5.0 )
LCG_external_package(jedi 0.19.1 )
LCG_external_package(jemalloc 5.3.0 )
LCG_external_package(Jinja2 3.1.2 )
......@@ -711,7 +711,7 @@ if( (${LCG_COMP} MATCHES clang) AND (${LCG_COMPVERS} VERSION_LESS_EQUAL 12) AND
LCG_remove_package(Qt6)
endif()
LCG_external_package(qastle 0.16.0 )
LCG_external_package(qibo 0.2.14 )
LCG_external_package(qibo 0.2.15 )
LCG_external_package(qibojit 0.1.3 )
LCG_external_package(qulacs 0.6.4.1 )
LCG_external_package(qrcode 7.4.2 )
......@@ -752,7 +752,7 @@ LCG_external_package(rq 1.10.1
LCG_external_package(rsa 4.0 )
LCG_external_package(ruamel_yaml 0.17.31 )
LCG_external_package(ruamel_yaml_clib 0.2.7 )
LCG_external_package(ruff 0.9.0 )
LCG_external_package(ruff 0.9.2 )
LCG_external_package(rust 1.82.0 )
LCG_external_package(s3transfer 0.10.3 )
LCG_external_package(safetensors 0.4.3 )
......@@ -835,7 +835,7 @@ LCG_external_package(tex2pix 0.3.1 )
LCG_external_package(texttable 1.7.0 )
LCG_external_package(textual 0.74.0 )
LCG_external_package(tfs_pandas 3.5.1 )
LCG_external_package(tf_keras 2.16.0 )
LCG_external_package(tf_keras 2.18.0 )
LCG_external_package(threadpoolctl 3.5.0 )
LCG_external_package(thrift 0.16.0 )
LCG_external_package(tiff 4.2.0 )
......
This diff is collapsed.
......@@ -44,7 +44,7 @@ endif()
LCG_external_package(collier 1.2.8 ${MCGENPATH}/collier)
LCG_external_package(syscalc 1.1.7 ${MCGENPATH}/syscalc)
LCG_external_package(madgraph5amc 3.5.5.atlas11 ${MCGENPATH}/madgraph5amc author=3.5.5)
LCG_external_package(madgraph5amc 3.5.7.atlas11 ${MCGENPATH}/madgraph5amc author=3.5.7)
LCG_external_package(lhapdf 6.5.5 ${MCGENPATH}/lhapdf )
......@@ -77,7 +77,7 @@ LCG_external_package(evtgen 2.2.1 ${MCGENPATH}/evtgen
LCG_external_package(hijing 1.383bs.2 ${MCGENPATH}/hijing )
LCG_external_package(starlight r313 ${MCGENPATH}/starlight )
LCG_external_package(starlight r330 ${MCGENPATH}/starlight )
LCG_external_package(qd 2.3.13 ${MCGENPATH}/qd )
......
......@@ -14,7 +14,7 @@ LCG_external_package(openloops 2.1.3 ${MCGENPATH}/openloops)
LCG_external_package(pep517 0.13.1 )
LCG_external_package(prctl 1.8.1 )
LCG_external_package(MarkupSafe 2.1.5 )
LCG_external_package(threadpoolctl 3.5.0 )
###LCG_external_package(threadpoolctl 3.5.0 )
LCG_remove_package(messaging)
#LCG_external_package(messaging 1.2 )
LCG_external_package(testpath 0.6.0 )
......@@ -32,7 +32,7 @@ LCG_external_package(bcrypt 4.1.3 )
LCG_external_package(pynacl 1.5.0 )
LCG_external_package(argon2_cffi 23.1.0 )
LCG_external_package(argon2_cffi_bindings 21.2.0 )
LCG_external_package(partd 1.4.2 )
###LCG_external_package(partd 1.4.2 )
LCG_external_package(sphinx 8.1.3 )
LCG_external_package(opt_einsum 3.3.0 )
#LCG_external_package(minio 7.2.7 )
......@@ -44,20 +44,20 @@ LCG_external_package(jax 0.4.35 )
LCG_external_package(jaxlib 0.4.35 )
LCG_external_package(aiohttp 3.9.5 )
LCG_external_package(greenlet 3.0.3 )
LCG_external_package(func_adl 3.3.1 )
LCG_external_package(ruamel_yaml_clib 0.2.8 )
LCG_external_package(ruamel_yaml 0.18.6 )
LCG_external_package(func_adl 3.3.3 )
LCG_external_package(ruamel_yaml_clib 0.2.12 )
LCG_external_package(ruamel_yaml 0.18.10 )
LCG_external_package(pysimdjson 6.0.2 )
LCG_external_package(pylint 3.2.3 )
LCG_external_package(qibo 0.2.13 )
LCG_external_package(pydantic 2.10.3 )
##LCG_external_package(pylint 3.3.3 )
##LCG_external_package(qibo 0.2.13 )
LCG_external_package(pydantic 2.10.5 )
LCG_external_package(pywt 1.6.0 )
LCG_external_package(grpcio 1.65.2 )
#LCG_external_package(torchvision 0.18.1 )
LCG_external_package(torchvision 0.20.1 ) # test to see if test fail (nms) fixed
###LCG_external_package(torchvision 0.20.1 ) # test to see if test fail (nms) fixed
LCG_external_package(numba 0.60.0 )
LCG_external_package(qibojit 0.1.7 )
LCG_external_package(tensorflow 2.18.0 ) # test to see if test fail=distutil is fixed
###LCG_external_package(tensorflow 2.18.0 ) # test to see if test fail=distutil is fixed
#LCG_external_package(tensorflow_cpu 2.18.0 ) # test to see if test fail=distutil is fixed
LCG_external_package(tensorflow_io_gcs_filesystem 0.37.1 )
#LCG_external_package(snappy 1.2.1 )
......@@ -96,49 +96,49 @@ LCG_external_package(traitlets 5.14.3 )# was 5.14.3 downgraded by it
#LCG_external_package(traitlets 5.6.0 )# was 5.14.3 downgraded by itkwidgets
LCG_external_package(imjoy_utils 0.1.2 )
LCG_external_package(imjoy_rpc 0.5.59 )
LCG_external_package(zarr 3.0.0b2 )
LCG_external_package(zarr 3.0.0 )
LCG_external_package(itkwasm 1.0b185 )
LCG_external_package(itkwidgets 1.0a53 )
LCG_external_package(decorator 5.1.1 )
LCG_external_package(pyzmq 26.2.0 )# https://stackoverflow.com/questions/17275875
LCG_external_package(Jinja2 3.1.4 )
LCG_external_package(tornado 6.4.1 )
###LCG_external_package(tornado 6.4.1 )
LCG_external_package(prompt_toolkit 3.0.47 )
#LCG_external_package(psutil 6.0.0 ) #use previous version for python version consistency
LCG_external_package(lxml 5.2.2 )
###LCG_external_package(lxml 5.2.2 )
LCG_external_package(jsonschema 4.23.0 )
LCG_external_package(jupyter_latex_envs 1.4.6 author=1.4.6 )
LCG_external_package(nbconvert 7.16.4 )
LCG_external_package(ipykernel 6.29.5 )
LCG_external_package(widgetsnbextension 4.0.13 )
LCG_external_package(onnxruntime 1.18.1 )
##LCG_external_package(onnxruntime 1.18.1 )
LCG_external_package(arrow 17.0.0 )
LCG_external_package(pyarrow 17.0.0 )
LCG_external_package(setuptools 75.1.0 )
LCG_external_package(setuptools_scm 8.1.0 )
LCG_external_package(torch 2.5.0 )
##LCG_external_package(torch 2.5.0 )
LCG_external_package(send2trash 1.8.3 )
LCG_external_package(astropy 6.1.4 )
LCG_external_package(matplotlib 3.9.2 )
LCG_external_package(matplotlib_inline 0.1.7 )
LCG_external_package(boto3 1.35.41 )
LCG_external_package(botocore 1.35.41 )
##LCG_external_package(boto3 1.35.41 )
##LCG_external_package(botocore 1.35.41 )
LCG_external_package(altair 5.4.1 )
LCG_external_package(stack_data 0.6.3 )
LCG_external_package(accelerate 1.0.1 )
LCG_external_package(numpy 1.26.4 ) #commit bd6ce031 use 1st Py12 compatible version of numpy
###LCG_external_package(numpy 1.26.4 ) #commit bd6ce031 use 1st Py12 compatible version of numpy
LCG_external_package(colorcet 3.1.0 )
LCG_external_package(scipy 1.14.1 )
###LCG_external_package(scipy 1.14.1 )
LCG_external_package(narwhals 1.9.4 )
LCG_external_package(pytensor 2.26.4 )
LCG_external_package(blosc2 2.7.1 )
LCG_external_package(importlib_metadata 8.5.0 )
LCG_external_package(importlib_resources 6.4.5 )
LCG_external_package(importlib_resources 6.5.2 )
LCG_external_package(future 1.0.0 )
LCG_external_package(h5py 3.12.1 )
LCG_external_package(executing 2.1.0 )
LCG_external_package(numexpr 2.10.1 )
LCG_external_package(s3transfer 0.10.3 )
###LCG_external_package(s3transfer 0.10.3 )
LCG_external_package(hepdata_converter 0.3.0 )
LCG_external_package(huggingface_hub 0.26.2 )
#LCG_external_package(ipydatawidgets 4.3.5 )
......@@ -150,7 +150,7 @@ LCG_external_package(crypto 1.4.1 )
LCG_external_package(python_box 7.2.0 )
LCG_external_package(naked 0.1.32 )
LCG_external_package(shellescape 3.8.1 )
LCG_external_package(servicex 3.0.0 )
LCG_external_package(servicex 3.0.1 )
LCG_external_package(tqdm 4.66.6 )
LCG_external_package(miniopy_async 1.21.1 )
LCG_external_package(joblib 1.4.2 )
......@@ -180,17 +180,17 @@ LCG_external_package(pyshp 2.3.1 )
LCG_external_package(kr8s 0.17.4 ) #update to the latest (now back to 0.17.4 following cons. check ) and add dependencies: asyncache cryptography httpx_ws
LCG_external_package(distributed 2024.11.2 )
LCG_external_package(zipp 3.20.2 )
LCG_external_package(ml_dtypes 0.4.1 )
###LCG_external_package(ml_dtypes 0.4.1 )
LCG_external_package(pythran 0.17.0 )
LCG_external_package(qtconsole 5.6.1 )
LCG_external_package(qtpy 2.4.2 )
LCG_external_package(safetensors 0.4.5 )
LCG_external_package(scikitlearn 1.5.2 )
LCG_external_package(caio 0.9.17 )
LCG_external_package(httpx_ws 0.6.2 )
LCG_external_package(httpx 0.28.0 )
LCG_external_package(absl_py 1.2.0 )#was 2.1.0
LCG_external_package(flatbuffers 24.3.25 )
LCG_external_package(httpx_ws 0.7.1 )
LCG_external_package(httpx 0.28.1 )
##LCG_external_package(absl_py 1.2.0 )#was 2.1.0
###LCG_external_package(flatbuffers 24.3.25 )
LCG_external_package(idna 3.10 )
LCG_external_package(libclang 18.1.1 )
LCG_external_package(wrapt 1.16.0 )
......@@ -199,7 +199,7 @@ LCG_external_package(werkzeug 3.1.3 )
LCG_external_package(markdown 3.7 )
LCG_external_package(hdf5 1.14.5 )
LCG_external_package(PyHEADTAIL 1.16.4 )
LCG_external_package(pytables 3.10.1 )
LCG_external_package(pytables 3.10.2 )
LCG_external_package(wsproto 1.2.0 )
LCG_external_package(rfc3339_validator 0.1.4 )
LCG_external_package(rfc3986_validator 0.1.1 )
......@@ -211,7 +211,7 @@ LCG_external_package(aiohttp_retry 2.9.1 )
LCG_external_package(memory_profiler 0.61.0 )
LCG_external_package(hepstats 0.9.0 )
LCG_external_package(ccorp_yaml_include_relative_path 0.0.4 )
LCG_external_package(typer 0.13.1 )
LCG_external_package(typer 0.15.1 )
LCG_external_package(types_pyyaml 6.0.12.20240917 )
LCG_external_package(cryptography 43.0.3 )
LCG_external_package(shellingham 1.5.4 )
......@@ -228,7 +228,7 @@ LCG_external_package(fsphinxcontrib_applehelp 2.0.0 )
LCG_external_package(sphinxcontrib_devhelp 2.0.0 )
LCG_external_package(sphinxcontrib_qthelp 2.0.0 )
LCG_external_package(docutils 0.21.2 )
LCG_external_package(tensorboard 2.18.0 )
###LCG_external_package(tensorboard 2.18.0 )
LCG_external_package(scikit_hep 2024.10.1 )
LCG_external_package(anyio 4.6.1 )
LCG_external_package(httpcore 1.0.7 )
......@@ -236,7 +236,7 @@ LCG_external_package(ngff_zarr 0.10.2 )
LCG_external_package(beniget 0.4.2.post1 )
#LCG_external_package(langchain_community 0.3.9 )
LCG_external_package(langchain_core 0.3.29 )#was 0.3.21 then set to 0.2.43 for consistency
LCG_external_package(langchain 0.3.9 )
LCG_external_package(langchain 0.3.14 )
LCG_external_package(httpstan 4.13.0 )
LCG_external_package(snowballstemmer 2.2.0 )
LCG_external_package(sphinxcontrib_applehelp 2.0.0 )
......@@ -245,30 +245,36 @@ LCG_external_package(distlib 0.3.9 )
LCG_external_package(json_logger 2.0.7 ) #python_json_logger
LCG_external_package(histoprint 2.5.0 )
LCG_external_package(iminuit 2.30.1 )
LCG_external_package(uproot 5.4.0 )
LCG_external_package(uproot 5.5.1 )
LCG_external_package(avro 1.12.0 )
LCG_external_package(fsspec 2024.10.0 )
LCG_external_package(fsspec 2024.12.0 )
LCG_external_package(numcodecs 0.14.1 )
#-
LCG_external_package(httpx_sse 0.4.0 )
LCG_external_package(pydantic_settings 2.6.1 )
LCG_external_package(shortuuid 1.0.13 )
LCG_external_package(websockets 14.1 )
LCG_external_package(asciitree 0.3.3 )
LCG_external_package(crc32c 2.7.1 )
LCG_external_package(donfig 0.8.1.post1 )
LCG_external_package(itkwasm_downsample 1.4.3 )
LCG_external_package(rich_argparse 1.6.0 )
LCG_external_package(wasmtime 27.0.2 )
LCG_external_package(langsmith 0.2.10 )
LCG_external_package(langchain_text_splitters 0.3.5 )
LCG_external_package(webcolors 24.11.1 )
LCG_external_package(openapi_core 0.19.4 )
LCG_external_package(jsonschema_path 0.3.3 )
LCG_external_package(requests_toolbelt 1.0.0 )
LCG_external_package(langchain_community 0.3.14 )
LCG_external_package(python_dotenv 1.0.1 )
# LCG_external_package(Shiboken 1.2.2 )
# LCG_external_package(pandas 0.24.2) it was requested bv python consistency check but gives distutils error
LCG_external_package(httpx_sse 0.4.0 )
LCG_external_package(pydantic_settings 2.6.1 )
LCG_external_package(shortuuid 1.0.13 )
LCG_external_package(websockets 14.1 )
LCG_external_package(asciitree 0.3.3 )
LCG_external_package(crc32c 2.7.1 )
LCG_external_package(donfig 0.8.1.post1 )
LCG_external_package(itkwasm_downsample 1.4.3 )
LCG_external_package(rich_argparse 1.6.0 )
LCG_external_package(wasmtime 28.0.0 )
LCG_external_package(langsmith 0.2.10 )
LCG_external_package(langchain_text_splitters 0.3.5 )
###LCG_external_package(webcolors 24.11.1 )
LCG_external_package(openapi_core 0.19.4 )
LCG_external_package(jsonschema_path 0.3.3 )
LCG_external_package(requests_toolbelt 1.0.0 )
LCG_external_package(langchain_community 0.3.14 )
LCG_external_package(python_dotenv 1.0.1 )
LCG_external_package(referencing 0.35.1 )
LCG_external_package(pathable 0.4.4 )
LCG_external_package(isodate 0.7.2 )
LCG_external_package(more_itertools 10.6.0 )
LCG_external_package(openapi_schema_validator 0.6.3 )
LCG_external_package(openapi_spec_validator 0.7.1 )
LCG_external_package(parse 1.20.2 )
LCG_external_package(rich 13.9.4 )
LCG_external_package(pyxxhash 3.5.0 )
LCG_external_package(itkwasm_downsample_wasi 1.5.0 )
......@@ -18,7 +18,7 @@ LCG_external_package(veccore 0.8.1 )
LCG_external_package(g4hepem 20250106 )
LCG_top_packages(cuda VecGeom veccore Boost lcgenv CMake ninja doxygen pytest Geant4 g4hepem hepmc3)
LCG_top_packages(cuda VecGeom veccore Boost lcgenv CMake ninja doxygen pytest Geant4 g4hepem hepmc3 pandas)
#---Remove unneeded packages that create problems------------------
LCG_remove_package(huggingface_hub)
......
LCG_remove_package(pythonsollya)
LCG_external_package(Python 3.11.9 )
LCG_external_package(sip 6.8.3 )
LCG_external_package(genshi 0.7.7 )
LCG_external_package(cython 3.0.10 )
LCG_external_package(frozenlist 1.4.1 )
LCG_external_package(gssapi 1.8.3 )
LCG_external_package(rpds_py 0.18.0 )
LCG_external_package(mpi4py 3.1.5 )
LCG_external_package(mimesis 14.0.0 )
LCG_external_package(yarl 1.9.4 )
LCG_external_package(zstandard 0.22.0 )
LCG_external_package(tensorflow_io_gcs_filesystem 0.36.0 )
LCG_external_package(pyproj 3.6.1 )
LCG_external_package(meson 1.3.2 )
LCG_external_package(lxml 5.2.2 )
LCG_external_package(multiprocess 0.70.16 )
#LCG_external_package(multiprocessing 2.6.2.1 )
LCG_external_package(pyqt5_sip 12.15.0 )
LCG_external_package(pyqt5 5.15.10 )
LCG_external_package(professor 2.4.1 )
LCG_external_package(PyHEADTAIL 1.16.1 )
LCG_external_package(hdf5 1.14.3 )
LCG_external_package(hdf5_mpi 1.14.3 )
LCG_external_package(statsmodels 0.14.1 )
LCG_external_package(pyqt_builder 1.15.4 )
#
# tests are failing: trying to upgrade packages
#
LCG_external_package(accelerate 0.29.2 )
LCG_external_package(toolz 0.12.1 )
LCG_external_package(pydantic_core 2.18.2 )
LCG_external_package(annotated_types 0.6.0 )
#
LCG_external_package(pydantic 1.10.15 )
LCG_external_package(dill 0.3.8 )
LCG_external_package(astroid 2.15.8 )
LCG_external_package(patsy 0.5.6 )
LCG_external_package(huggingface_hub 0.23.2 )
LCG_external_package(safetensors 0.4.3 )
LCG_external_package(html5lib 1.1 )
LCG_external_package(kopf 1.37.2 )
LCG_external_package(typing_extensions 4.12.1 )
LCG_external_package(pexpect 4.9.0 )
LCG_external_package(shapely 2.0.5 )
......@@ -2019,6 +2019,16 @@
"license": null,
"name": "itkwasm_downsample"
},
{
"category": null,
"contacts": [],
"description": null,
"fullname": "",
"homepage": null,
"language": null,
"license": null,
"name": "itkwasm_downsample_wasi"
},
{
"category": null,
"contacts": [],
......@@ -3179,6 +3189,26 @@
"license": null,
"name": "openapi_schema_pydantic"
},
{
"category": null,
"contacts": [],
"description": null,
"fullname": "",
"homepage": null,
"language": null,
"license": null,
"name": "openapi_schema_validator"
},
{
"category": null,
"contacts": [],
"description": null,
"fullname": "",
"homepage": null,
"language": null,
"license": null,
"name": "openapi_spec_validator"
},
{
"category": null,
"contacts": [],
......@@ -3389,6 +3419,16 @@
"license": null,
"name": "patchelf"
},
{
"category": null,
"contacts": [],
"description": null,
"fullname": "",
"homepage": null,
"language": null,
"license": null,
"name": "pathable"
},
{
"category": null,
"contacts": [],
......
......@@ -2167,9 +2167,9 @@ LCGPackage_Add(
URL ${GenURL}/openmpi-${openmpi_native_version}.tar.gz
IF ${LCG_OS} MATCHES mac THEN
ENVIRONMENT MACOSX_DEPLOYMENT_TARGET=11.0
ENVIRONMENT SDKROOT=/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk # Fix when the Foundation framework is not found
ENDIF
CONFIGURE_COMMAND ./configure --prefix=<INSTALL_DIR>
--enable-mpi-cxx
--disable-dependency-tracking
--disable-silent-rules
--enable-ipv6
......
This diff is collapsed.
--- src/inputParser.cpp.orig
+++ src/inputParser.cpp
@@ -54,5 +54,5 @@
return -1;
}
- int lineSize = 256;
+ const int lineSize = 256;
char tmp[lineSize];
int nParameters = 0;
-int lineSize = 256;
+const int lineSize = 256;
--- src/starlightStandalone.cpp.orig
+++ src/starlightStandalone.cpp
@@ -83,5 +83,5 @@
}
- int lineSize = 256;
+ const int lineSize = 256;
char tmp[lineSize];
while (!infile.getline(tmp, lineSize).eof())
......@@ -140,7 +140,7 @@ if(ROOT_native_version)
IF DEFINED protobuf_native_version THEN
-Dtmva-sofie=ON
ENDIF
IF DEFINED mysql_native_version AND ${ROOT_native_version} VERSION_GREATER_EQUAL 6.34 THEN
IF DEFINED mysql_native_version AND ${ROOT_version} VERSION_GREATER_EQUAL 6.34 THEN
-Dmysql=OFF
ELSE
-Dmysql=ON
......@@ -173,7 +173,7 @@ if(ROOT_native_version)
-Dbuiltin_nlohmannjson=ON
ENDIF
DEPENDS Python fftw GSL xrootd numpy tbb blas zlib libxml2 vdt xz gl2ps cfitsio
IF DEFINED mysql_native_version AND ${ROOT_native_version} VERSION_LESS 6.34 THEN
IF DEFINED mysql_native_version AND ${ROOT_version} VERSION_LESS 6.34 THEN
mysql
ENDIF
IF DEFINED cuda_native_version AND ROOT_${ROOT_native_version}_CUDA THEN
......
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......@@ -10,3 +10,8 @@
+++ third_party/zlib/gzguts.h 2023-06-06 19:08:24.693951456 +0200
@@ -4,0 +5 @@
+#include <unistd.h>
--- src/core/lib/promise/detail/basic_seq.h~ 2023-07-14 20:04:35.000000000 +0200
+++ src/core/lib/promise/detail/basic_seq.h 2025-01-16 11:20:51.364742675 +0100
@@ -474 +474 @@
- Traits::template CallSeqFactory(f_, *cur_, std::move(arg)));
+ Traits::template CallSeqFactory<>(f_, *cur_, std::move(arg)));