Python package updates

• Changes after issues pointed out by the pip check and dependency tests
• some fixes for calling lcgtest to properly run some tests.

To run the testing, add a comment with:

Bot test PACKAGE|all in TOOLCHAIN|all [(only|also) for LABEL-COMPILER-BUILDTYPE] please!

To ensure patches required for existing LCG branches are not lost, please add the respective labels: alsoTargeting:LCG_102-patches, alsoTargeting:master, etc.