- remove `atlas_depends_on_subdirs`
- update library and external dependencies

Remove `atlas_depends_on_subdirs` and update library and external
dependencies.

Support FlowElements in JetReconstruction

The `FlowElement` (FE) EDM has been introduced to represent PFO/TCC/UFO objects, and PFO reconstruction is now capable of producing its output in FE format (TCC/UFOs in progress at the time of writing). This takes care of the next step, which is to add support for FEs in jet reconstruction itself. This affects tools which look at the constituents of jets, so most of the changes are related to jet modifier and constituent modifier tools.

This has also necessitated some more development of utilities for handling FlowElements, so I also introduce the `FEHelpers` collection of helper functions. The key difference is that all attribute handling lives outside of the EDM itself, allowing us more flexibility.

Quite a few other items came up during this development, so a summary of the changes is here:

**JetMomentTools, JetRecTools, JetUtils**
- Added support for FlowElements to all tools which depend on the jet constituent type.
- Only FlowElement representing PFOs are universally supported at the moment. We'll need a bit of further development to handle TCCs/UFOs when the time comes for that.
- Fixed a bug in JetPtAssociationTool where it was trying to match the input jet collection to itself. This is the kind of thing it would be great to have ART tests for!

**JetRec**
- Added a new job config flag **jetFlags.usePFlowFE**, which needs to be set to `True` for running FE-based jet reco. It is set to `False` by default.
- Added FlowElement support to `PseudoJetGetter`
- Added support for a FlowElement-based EMPFlow jet collection

**eFlowRec**
- Updated the naming scheme for FlowElement moments to harmonize them with the CaloCluster scheme.
- FlowElement reconstruction now correctly sets the `signalType` for the FEs it creates.
- Fixed a bug where FlowElement moments weren't being saved correctly to the output collections.

**xAODPFlow**
- Added a `setP4(..)` to the FlowElement EDM which takes in a `FourMom_t` instead of just the four individual components.

**PFlowUtils**
- Added `FEHelpers` namespace, containing utility functions for FlowElements such as computing corrected 4-vectors and accessing cluster moments.

**DerivationFramework**
- Added support for a "EMPFlowFE" chain in arbitrary derivations. This includes an addition to smart slimming lists, etc. This can be removed once we fully replace the nominal PFO collections and simply make "EMPFlow" the FlowElement-based one. But for now, we want to have both in parallel.

**ThinningUtils**
- Added FlowElement support to `ThinNegativeEnergyNeutralPFOsAlg`

I've tested this full set of changes by running the full reco chain from RDO->AOD to get updated FlowElements, and the jet reconstruction itself in AOD->DAOD. I was able to produce a modified DAOD_PHYS with these new jets using the additions to DerivationFramework, and verified that they do correctly reproduce the existing PFlow jets. Constituent-level variables appear identical; some differences in calibrated quantities are observed, which we suspect are from the calibration itself differing between the two collections. These tests have been fairly limited in scope; we'll of course want to do a more complete validation after this is in. 

After this MR, we'll need another doing the same thing for MET. That should be easier with the FE helper functions already in place. I also note that the config support added here uses the "old" jet config, which will soon be superseded. Putting the FlowElement support into the new config remains to be done, but that will be purely python-level and so isn't necessary before the feature freeze.

Tagging @delsart, @khoo, @mhodgkin, @sschramm for any input they might have.

Tagging @sawyer, @cdelitzs, @mswiatlo for their awareness.

See merge request atlas/athena!37239

Fix for ATLASRECTS-5662

Closes ATLASRECTS-5662

See merge request atlas/athena!37557

Update DFSUSY

See merge request !37520

Make EventBookkeeperTools properly dual use

Closes ATEAM-602

See merge request atlas/athena!37561

OutputStreamCfg: add ability to input MetadataItemList

See merge request atlas/athena!37552

Fix aliasing bug in newCovarianceMatrix method

See merge request !37440

GSF PosteriorWeightsCalculator : Reduce number of allocations

See merge request !37590

Add ATH_RESTRICT to addBiotSavart inputs.

See merge request !37582

Add new ART test for the FlowElement configuration

See merge request atlas/athena!37213

support LRT in tau reconstruction (ATLTAU-1721)

Closes ATLTAU-1721

See merge request !36445

Guillermo Nicolas Hamity authored 4 years ago and Frank Winklmeier committed 4 years ago

LRT track container included in TauTrackFinder
Using InDetLargeD0TrackParticles as LRT container
name will make this happen

Adding setting of WPs for Reta, Rhad and Wstot

See merge request !36876

Egamma:  qualify auto (eg const auto, const auto *, const auto &) , and use std::exp

See merge request !37585

TrkEvent/TrkGeometry:  use clang-tidy llvm 10. Among other things we can check for...

See merge request atlas/athena!37567

GSF . clang-tidy checks. Including possible use after move bugfix

See merge request !37565

Initialise MetaDataSvc with tools

See merge request !37551

InDetV0FinderTool: Make Reentrant

See merge request !37524

ByteStreamCnvSvc+ByteStreamCnvSvcBase+TrigByteStreamCnvSvc: Enable thread-safety checking.

See merge request atlas/athena!37578

Propagate new cell time cut on master

See merge request atlas/athena!37522

Connect Flow Elements to Muon container

See merge request !36273

Matthew Thomas Anthony authored 4 years ago and Frank Winklmeier committed 4 years ago

Reworked the cluster matching to be cell based matching if we're not matching TopoClusters to FE Topoclusters

Make Muon Segment Finding Algs Reentrant

See merge request atlas/athena!37444