[v31] adapt to changes in transformation input data query interfaces

Andre Sailerrequested to merge
sailer/ILCDIRAC:v31_fixTrafo into Rel-v31r0

BEGINRELEASENOTES

*ITS
CHANGE: Use the changed way of creating and retrieving InputDataQuery

*Interfaces
CHANGE: Remove the ProductionJob.applyInputDataQuery function.

ENDRELEASENOTES

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