Missing root logical volumes in the geometry sqlite dump from Athena

I am quoting an issue discovered by @mihaly Mihaly Novak here:

However, there must be some differences in the geometries what I use wSpecialShapes.db (as listed here) and what was used in the Athena run that generated the above log file. While most of the produced regions and their settings are identical to that we can see in the log file, there are some differences. The most significant one is that I cannot find any of the listed (TRT::Gas_Ar, TRT::GasMA_Ar nor similar) root logical volumes of the TRT_Ar region in the wSpecialShapes.db geometry while 3 logical volumes with these names could be found in Athena (according to the below part of the log file)

16:12:23 ToolSvc.G4Atlas...   INFO +----------------------------------------------------+
16:12:23 ToolSvc.G4Atlas...   INFO A total of 3 volumes was assigned to region TRT_Ar
16:12:23 ToolSvc.G4Atlas...   INFO +----------------------------------------------------+
16:12:23 ToolSvc.G4Atlas...   INFO
16:12:23 ToolSvc.G4Atlas...   INFO     Dump of region  TRT_Ar
16:12:23 ToolSvc.G4Atlas...   INFO     Volumes being assigned to this region:
16:12:23 ToolSvc.G4Atlas...   INFO       TRT::Gas_Ar
16:12:23 ToolSvc.G4Atlas...   INFO       TRT::GasMA_Ar
16:12:23 ToolSvc.G4Atlas...   INFO
16:12:23 ToolSvc.G4Atlas...   INFO     Cuts selected for this region:
16:12:23 ToolSvc.G4Atlas...   INFO       Gamma    = 'GammaCut':0.050000000
16:12:23 ToolSvc.G4Atlas...   INFO       Electron = 'ElectronCut':30.000000
16:12:23 ToolSvc.G4Atlas...   INFO       Positron = 'PositronCut':30.000000
16:12:23 ToolSvc.G4Atlas...   INFO       Proton   = 'ProtonCut':1.0000000

So it seems that the wSpecialShapes.db geometry do not contain that part of the geometry that corresponds to the TRT_Ar region.