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refactor: clean input files

Lorenzo Giacomel requested to merge refactor-group-data-files into master

We tidy up the model input files which used to be scattered between lhc_pywit_model/data, lhc_pywit_model/lhc_elements and the example folders gathering all the ones which are typically not expected to change (e.g. HOMs, broadband contributions, machine layout..) into lhc_pywit_model/data. In the example folders we leave only example-specific files such as the optics and the collimator settings. This will fix #22 (closed).

Edited by Lorenzo Giacomel

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