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[Run2_2017] Fix some issues with the workflow, setup, and unit tests

Merged Alexx Perloff requested to merge github/fork/aperloff/Run2_2017_Docker into Run2_2017

Created by: aperloff

This PR fixes the following issues:

  1. The setup.sh script sources a .bashrc file every time the shell is not-interactive, which is always when the script is executed. Instead, only source the login file when in batch mode.
  2. Fix an off-by-one error in the unitTest.py file. Also rearrange the unit tests themselves.
  3. Fix some issues with the github user referenced in the workflows.