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Fix handling of GRID files which are relative links [skip ci]

Spyros Argyropoulos requested to merge fixLinks into master

When a GRID file is a relative link the check_grid_file* jobs and run_athena would crash because they couldn't find the end file.

We add a loop to go through all relative links.

Closes #46 (closed)

Edited by Spyros Argyropoulos

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