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[ftools] GbtConfig(5).h: some clean-up and renaming in link configuration...

Henk Boterenbrood requested to merge FLX-2077 into master

[ftools] GbtConfig(5).h: some clean-up and renaming in link configuration structs and fix of isEnabled(); felink, FlxConfig: try fix is-elink-enabled functionality; flxdefs.h: remove BLOCK_EPATH_SHIFT define; fupload: remove bitindex option; fdaq.cpp(m): start emulator just before daq loop

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